1
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Parte LG, Fernández S, Sandonís E, Guerra J, López E. Transition-Metal-Catalyzed Transformations for the Synthesis of Marine Drugs. Mar Drugs 2024; 22:253. [PMID: 38921564 PMCID: PMC11204618 DOI: 10.3390/md22060253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/23/2024] [Accepted: 05/25/2024] [Indexed: 06/27/2024] Open
Abstract
Transition metal catalysis has contributed to the discovery of novel methodologies and the preparation of natural products, as well as new chances to increase the chemical space in drug discovery programs. In the case of marine drugs, this strategy has been used to achieve selective, sustainable and efficient transformations, which cannot be obtained otherwise. In this perspective, we aim to showcase how a variety of transition metals have provided fruitful couplings in a wide variety of marine drug-like scaffolds over the past few years, by accelerating the production of these valuable molecules.
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Affiliation(s)
- Lucía G. Parte
- Department of Organic Chemistry, Science Faculty, University of Valladolid (UVa), Paseo de Belén 7, 47011 Valladolid, Spain; (L.G.P.); (E.S.)
| | - Sergio Fernández
- Department of Chemistry, School of Physical and Chemical Sciences, Queen Mary University of London (QMUL), Mile End Road, London E1 4NS, UK;
| | - Eva Sandonís
- Department of Organic Chemistry, Science Faculty, University of Valladolid (UVa), Paseo de Belén 7, 47011 Valladolid, Spain; (L.G.P.); (E.S.)
| | - Javier Guerra
- Department of Organic Chemistry, Science Faculty, University of Valladolid (UVa), Paseo de Belén 7, 47011 Valladolid, Spain; (L.G.P.); (E.S.)
| | - Enol López
- Department of Organic Chemistry, ITAP, School of Engineering (EII), University of Valladolid (UVa), Dr Mergelina, 47002 Valladolid, Spain
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2
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Morris J, Takahashi-Ruiz L, Persi LN, Summers JC, McCauley EP, Chan PYW, Amberchan G, Lizama-Chamu I, Coppage DA, Crews P, Risinger AL, Johnson TA. Re-evaluation of the Fijianolide/Laulimalide Chemotype Suggests an Alternate Mechanism of Action for C-15/C-20 Analogs. ACS OMEGA 2022; 7:8824-8832. [PMID: 35309480 PMCID: PMC8928504 DOI: 10.1021/acsomega.1c07146] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Accepted: 02/23/2022] [Indexed: 06/14/2023]
Abstract
Herein, we report on naturally derived microtubule stabilizers with activity against triple negative breast cancer (TNBC) cell lines, including paclitaxel, fijianolide B/laulimalide (3), fijianolide B di-acetate (4), and two new semisynthetic analogs of 3, which include fijianolide J (5) and fijianolide L (6). Similar to paclitaxel, compound 3 demonstrated classic microtubule stabilizing activity with potent (GI50 = 0.7-17 nM) antiproliferative efficacy among the five molecularly distinct TNBC cell lines. Alternatively, compounds 5 or 6, generated from oxidation of C-20 or C-15 and C-20 respectively, resulted in a unique profile with reduced potency (GI50 = 4-9 μM), but improved efficacy in some lines, suggesting a distinct mechanism of action. The C-15, C-20 di-acetate, and dioxo modifications on 4 and 6 resulted in compounds devoid of classic microtubule stabilizing activity in biochemical assays. While 4 also had no detectable effect on cellular microtubules, 6 promoted a reorganization of the cytoskeleton resulting in an accumulation of microtubules at the cell periphery. Compound 5, with a single C-20 oxo substitution, displayed a mixed phenotype, sharing properties of 3 and 6. These results demonstrate the importance of the C-15/C-20 chiral centers, which appear to be required for the potent microtubule stabilizing activity of this chemotype and that oxidation of these sites promotes unanticipated cytoskeletal alterations that are distinct from classic microtubule stabilization, likely through a distinct mechanism of action.
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Affiliation(s)
- Joseph
D. Morris
- Department
of Natural Sciences, Dominican University
of California, San Rafael, California 94901, United States
| | - Leila Takahashi-Ruiz
- Department
of Pharmacology, University of Texas Health
Science Center at San Antonio, San Antonio, Texas 78229, United States
| | - Lauren N. Persi
- Department
of Natural Sciences, Dominican University
of California, San Rafael, California 94901, United States
| | - Jonathan C. Summers
- Department
of Natural Sciences, Dominican University
of California, San Rafael, California 94901, United States
| | - Erin P. McCauley
- Department
of Chemistry & Biochemistry, University
of California, Santa Cruz, California 95064, United States
| | - Peter Y. W. Chan
- Department
of Pharmacology, University of Texas Health
Science Center at San Antonio, San Antonio, Texas 78229, United States
| | - Gabriella Amberchan
- Department
of Chemistry & Biochemistry, University
of California, Santa Cruz, California 95064, United States
| | - Itzel Lizama-Chamu
- Department
of Chemistry & Biochemistry, University
of California, Santa Cruz, California 95064, United States
| | - David A. Coppage
- Department
of Chemistry & Biochemistry, University
of California, Santa Cruz, California 95064, United States
| | - Phillip Crews
- Department
of Chemistry & Biochemistry, University
of California, Santa Cruz, California 95064, United States
| | - April L. Risinger
- Department
of Pharmacology, University of Texas Health
Science Center at San Antonio, San Antonio, Texas 78229, United States
| | - Tyler A. Johnson
- Department
of Natural Sciences, Dominican University
of California, San Rafael, California 94901, United States
- Department
of Chemistry & Biochemistry, University
of California, Santa Cruz, California 95064, United States
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3
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Mata G, Kalnmals CA. Total Synthesis in the Trost Laboratories: Selected Milestones From the Past Twenty Years. Isr J Chem 2021. [DOI: 10.1002/ijch.202100022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Guillaume Mata
- Arcus Biosciences, Inc. 3928 Point Eden Way Hayward CA 94545 USA
| | - Christopher A. Kalnmals
- Crop Protection Discovery Corteva Agriscience 9330 Zionsville Road Indianapolis IN 46268 USA
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4
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Peng T, Zhu H, Xu Y, Li D, Wang Y, Wang L, Liu X, Yang D, Wang R. Synergistic zinc catalyst mediated oxa-Michael kinetic resolution reaction. Org Chem Front 2021. [DOI: 10.1039/d1qo00402f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An oxa-Michael kinetic resolution reaction is developed to efficiently construct complexed polycyclic motifs by developing novel bifunctional zinc catalysts.
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Affiliation(s)
- Tianyu Peng
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Haiyong Zhu
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Yingfan Xu
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Dan Li
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Yuan Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Linqing Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Xin Liu
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Dongxu Yang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
| | - Rui Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province
- Institute of Drug Design & Synthesis
- Department of Pharmacology
- School of Basic Medical Sciences
- Lanzhou University
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5
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Trost BM, Hung C(J, Mata G. Zweikernige Metall‐ProPhenol‐Katalysatoren: Entwicklung und Anwendungen in der Synthese. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201909692] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Barry M. Trost
- Department of ChemistryStanford University 333 Campus Drive Stanford CA 94305 USA
| | - Chao‐I (Joey) Hung
- Department of ChemistryStanford University 333 Campus Drive Stanford CA 94305 USA
| | - Guillaume Mata
- Department of ChemistryStanford University 333 Campus Drive Stanford CA 94305 USA
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6
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Matsuo H, Hanamure Y, Miyano R, Takahashi Y, Ōmura S, Nakashima T. Screening for Sulfur Compounds by Molybdenum-Catalyzed Oxidation Combined with Liquid Chromatography-Mass Spectrometry. Molecules 2020; 25:molecules25020240. [PMID: 31936021 PMCID: PMC7024256 DOI: 10.3390/molecules25020240] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Revised: 12/25/2019] [Accepted: 12/27/2019] [Indexed: 01/28/2023] Open
Abstract
The molybdenum (Mo)-catalyzed oxidation of sulfide under neutral conditions yields sulfone. This reaction proceeds more smoothly than olefin epoxidation and primary or secondary alcohol oxidation. In this study, Mo-catalyzed oxidation was used to screen for sulfur compounds (named “MoS-screening”) in microbial broths by liquid chromatography-mass spectrometry (LC/MS). To demonstrate proof-of-concept, known sulfur microbial compounds were successfully identified from a mixture of non-sulfur microbial compounds as sulfinyl or sulfonyl products of Mo-catalyzed oxidation. Then our MoS-screening method was used to screen 300 samples of microbial broth for sulfur compounds. One of the identified compounds was a kitasetaline-containing N-acetyl cysteine moiety produced by an actinomycete strain. These results demonstrate the potential of MoS-screening in the search for new sulfur compounds from microbial sources.
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Affiliation(s)
- Hirotaka Matsuo
- Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan; (Y.H.); (Y.T.); (S.Ō.)
- Graduate School of Infection Control Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan;
- Correspondence: (H.M.); (T.N.); Tel./Fax: +81-3-5791-6450 (H.M. & T.N.)
| | - Yu Hanamure
- Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan; (Y.H.); (Y.T.); (S.Ō.)
| | - Rei Miyano
- Graduate School of Infection Control Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan;
| | - Yōko Takahashi
- Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan; (Y.H.); (Y.T.); (S.Ō.)
| | - Satoshi Ōmura
- Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan; (Y.H.); (Y.T.); (S.Ō.)
| | - Takuji Nakashima
- Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan; (Y.H.); (Y.T.); (S.Ō.)
- Graduate School of Infection Control Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan;
- Correspondence: (H.M.); (T.N.); Tel./Fax: +81-3-5791-6450 (H.M. & T.N.)
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7
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Trost BM, Hung C(J, Mata G. Dinuclear Metal‐ProPhenol Catalysts: Development and Synthetic Applications. Angew Chem Int Ed Engl 2019; 59:4240-4261. [DOI: 10.1002/anie.201909692] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Indexed: 12/16/2022]
Affiliation(s)
- Barry M. Trost
- Department of ChemistryStanford University 333 Campus Drive Stanford CA 94305 USA
| | - Chao‐I (Joey) Hung
- Department of ChemistryStanford University 333 Campus Drive Stanford CA 94305 USA
| | - Guillaume Mata
- Department of ChemistryStanford University 333 Campus Drive Stanford CA 94305 USA
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8
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Bocekova‐Gajdošíkova E, Epik B, Chou J, Akiyama K, Fukui N, Guénée L, Kündig EP. Microwave‐Assisted Synthesis and Transformations of Cationic CpRu(II)(naphthalene) and CpRu(II)(naphthoquinone) Complexes. Helv Chim Acta 2019. [DOI: 10.1002/hlca.201900076] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Eva Bocekova‐Gajdošíkova
- Department of Organic ChemistryUniversity of Geneva Quai Ernest Ansermet 30 CH-1211 Geneva 4 Switzerland
| | - Bugra Epik
- Department of Organic ChemistryUniversity of Geneva Quai Ernest Ansermet 30 CH-1211 Geneva 4 Switzerland
| | - Jingyu Chou
- Department of Organic ChemistryUniversity of Geneva Quai Ernest Ansermet 30 CH-1211 Geneva 4 Switzerland
| | - Katsuhiro Akiyama
- Department of Organic ChemistryUniversity of Geneva Quai Ernest Ansermet 30 CH-1211 Geneva 4 Switzerland
| | - Nobuaki Fukui
- Department of Organic ChemistryUniversity of Geneva Quai Ernest Ansermet 30 CH-1211 Geneva 4 Switzerland
| | - Laure Guénée
- Laboratory of CrystallographyUniversity of Geneva Quai Ernest Ansermet 24 CH-1211 Geneva 4 Switzerland
| | - E. Peter Kündig
- Department of Organic ChemistryUniversity of Geneva Quai Ernest Ansermet 30 CH-1211 Geneva 4 Switzerland
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9
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Roh SW, Choi K, Lee C. Transition Metal Vinylidene- and Allenylidene-Mediated Catalysis in Organic Synthesis. Chem Rev 2019; 119:4293-4356. [PMID: 30768261 DOI: 10.1021/acs.chemrev.8b00568] [Citation(s) in RCA: 141] [Impact Index Per Article: 28.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
With their mechanistic novelty and various modalities of reactivity, transition metal unsaturated carbene (alkenylidene) complexes have emerged as versatile intermediates for new reaction discovery. In particular, the past decade has witnessed remarkable advances in the chemistry of metal vinylidenes and allenylidenes, leading to the evolution of a diverse array of new catalytic transformations that are mechanistically distinct from those developed in the previous two decades. This review aims to provide a survey of the recent achievements in the development of organic reactions that make use of transition metal alkenylidenes as catalytic intermediates and their applications to organic synthesis.
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Affiliation(s)
- Sang Weon Roh
- Department of Chemistry , Seoul National University , Seoul 08826 , Republic of Korea
| | - Kyoungmin Choi
- Department of Chemistry , Seoul National University , Seoul 08826 , Republic of Korea
| | - Chulbom Lee
- Department of Chemistry , Seoul National University , Seoul 08826 , Republic of Korea
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10
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Hu L, Li Q, Yao L, Xu B, Wang X, Liao X. Enantioselective and Divergent Syntheses of Alstoscholarisines A, E and Their Enantiomers. Org Lett 2018; 20:6202-6205. [PMID: 30232898 DOI: 10.1021/acs.orglett.8b02679] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Concise, enantioselective, and divergent syntheses of alstoscholarisines A and E are presented in 8 and 9 steps, respectively; alstoscholarisine E has never been accessed before. A boron-mediated aldol reaction and Rh-catalyzed cycloisomerization were exploited to access stereoisomers 8 and 9 as key intermediates. The challenging sterically congested alstoscholarisine core was furnished by a reductive transannular cyclization in the final steps. This strategy was also used for the syntheses of enantiomers of alstoscholarisines A and E.
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Affiliation(s)
- Lu Hu
- School of Pharmaceutical Sciences, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Dis-eases, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education) , Tsinghua University , Beijing 100084 , China
| | - Qi Li
- School of Pharmaceutical Sciences, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Dis-eases, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education) , Tsinghua University , Beijing 100084 , China
| | - Licheng Yao
- School of Pharmaceutical Sciences, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Dis-eases, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education) , Tsinghua University , Beijing 100084 , China
| | - Bai Xu
- Institute of Genetics and Development Biology , Chinese Academy of Sciences , Beijing 100084 , China
| | - Xia Wang
- School of Pharmaceutical Sciences, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Dis-eases, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education) , Tsinghua University , Beijing 100084 , China
| | - Xuebin Liao
- School of Pharmaceutical Sciences, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Dis-eases, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education) , Tsinghua University , Beijing 100084 , China
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11
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Heravi MM, Mohammadkhani L. Recent applications of Stille reaction in total synthesis of natural products: An update. J Organomet Chem 2018. [DOI: 10.1016/j.jorganchem.2018.05.018] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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12
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Affiliation(s)
- Sukalyan Bhadra
- Inorganic Materials and Catalysis Division, Academy of Scientific and Innovative Research, CSIR-Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar, 364002 Gujarat, India
| | - Hisashi Yamamoto
- Molecular Catalyst Research Center, Chubu University, 1200, Matsumoto-Cho, Kasugai, Aichi 487-8501, Japan
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13
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Trost BM, Tracy JS. Organic Synthesis. Use of Alkynes as a Key to Innovation in Designing Structure for Function. Isr J Chem 2017. [DOI: 10.1002/ijch.201700077] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Barry M. Trost
- Chemistry, Stanford University 337 Campus Dr., Rm. 306 Stanford, CA 94305-5080
| | - Jacob S. Tracy
- Chemistry, Stanford University 337 Campus Dr., Rm. 306 Stanford, CA 94305-5080
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14
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Ciavatta ML, Lefranc F, Carbone M, Mollo E, Gavagnin M, Betancourt T, Dasari R, Kornienko A, Kiss R. Marine Mollusk-Derived Agents with Antiproliferative Activity as Promising Anticancer Agents to Overcome Chemotherapy Resistance. Med Res Rev 2017; 37:702-801. [PMID: 27925266 PMCID: PMC5484305 DOI: 10.1002/med.21423] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2016] [Revised: 09/20/2016] [Accepted: 09/23/2016] [Indexed: 12/18/2022]
Abstract
The chemical investigation of marine mollusks has led to the isolation of a wide variety of bioactive metabolites, which evolved in marine organisms as favorable adaptations to survive in different environments. Most of them are derived from food sources, but they can be also biosynthesized de novo by the mollusks themselves, or produced by symbionts. Consequently, the isolated compounds cannot be strictly considered as "chemotaxonomic markers" for the different molluscan species. However, the chemical investigation of this phylum has provided many compounds of interest as potential anticancer drugs that assume particular importance in the light of the growing literature on cancer biology and chemotherapy. The current review highlights the diversity of chemical structures, mechanisms of action, and, most importantly, the potential of mollusk-derived metabolites as anticancer agents, including those biosynthesized by mollusks and those of dietary origin. After the discussion of dolastatins and kahalalides, compounds previously studied in clinical trials, the review covers potentially promising anticancer agents, which are grouped based on their structural type and include terpenes, steroids, peptides, polyketides and nitrogen-containing compounds. The "promise" of a mollusk-derived natural product as an anticancer agent is evaluated on the basis of its ability to target biological characteristics of cancer cells responsible for poor treatment outcomes. These characteristics include high antiproliferative potency against cancer cells in vitro, preferential inhibition of the proliferation of cancer cells over normal ones, mechanism of action via nonapoptotic signaling pathways, circumvention of multidrug resistance phenotype, and high activity in vivo, among others. The review also includes sections on the targeted delivery of mollusk-derived anticancer agents and solutions to their procurement in quantity.
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Affiliation(s)
- Maria Letizia Ciavatta
- Consiglio Nazionale delle Ricerche (CNR)Istituto di Chimica Biomolecolare (ICB)Via Campi Flegrei 3480078PozzuoliItaly
| | - Florence Lefranc
- Service de Neurochirurgie, Hôpital ErasmeUniversité Libre de Bruxelles (ULB)1070BrusselsBelgium
| | - Marianna Carbone
- Consiglio Nazionale delle Ricerche (CNR)Istituto di Chimica Biomolecolare (ICB)Via Campi Flegrei 3480078PozzuoliItaly
| | - Ernesto Mollo
- Consiglio Nazionale delle Ricerche (CNR)Istituto di Chimica Biomolecolare (ICB)Via Campi Flegrei 3480078PozzuoliItaly
| | - Margherita Gavagnin
- Consiglio Nazionale delle Ricerche (CNR)Istituto di Chimica Biomolecolare (ICB)Via Campi Flegrei 3480078PozzuoliItaly
| | - Tania Betancourt
- Department of Chemistry and BiochemistryTexas State UniversitySan MarcosTX78666
| | - Ramesh Dasari
- Department of Chemistry and BiochemistryTexas State UniversitySan MarcosTX78666
| | - Alexander Kornienko
- Department of Chemistry and BiochemistryTexas State UniversitySan MarcosTX78666
| | - Robert Kiss
- Laboratoire de Cancérologie et de Toxicologie ExpérimentaleFaculté de Pharmacie, Université Libre de Bruxelles (ULB)1050BrusselsBelgium
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15
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Hu Y, Bai M, Yang Y, Zhou Q. Metal-catalyzed enyne cycloisomerization in natural product total synthesis. Org Chem Front 2017. [DOI: 10.1039/c7qo00702g] [Citation(s) in RCA: 62] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Enyne cycloisomerization has become a powerful and attractive strategy for the construction of cyclic compounds, thus possessing great potential for applications in total synthesis of natural products and pharmaceuticals.
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Affiliation(s)
- Ying Hu
- College of Chemistry and Molecular Sciences
- Wuhan University
- Wuhan
- P.R. China
| | - Miao Bai
- College of Chemistry and Molecular Sciences
- Wuhan University
- Wuhan
- P.R. China
| | - Ying Yang
- College of Chemistry and Molecular Sciences
- Wuhan University
- Wuhan
- P.R. China
| | - Qianghui Zhou
- College of Chemistry and Molecular Sciences
- Wuhan University
- Wuhan
- P.R. China
- The Institute for Advanced Studies
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16
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Highly regioselective homoallyl alcohol protection through ring opening of p-methoxybenzylidene acetal. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.10.068] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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17
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Trost BM, Stivala CE, Fandrick DR, Hull KL, Huang A, Poock C, Kalkofen R. Total Synthesis of (-)-Lasonolide A. J Am Chem Soc 2016; 138:11690-701. [PMID: 27548113 PMCID: PMC5728428 DOI: 10.1021/jacs.6b05127] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The lasonolides are novel polyketides that have displayed remarkable biological activity in vitro against a variety of cancer cell lines. Herein we describe our first-generation approach to the formal synthesis of lasonolide A. The key findings from these studies ultimately allowed us to go on and complete a total synthesis of lasonolide A. The convergent approach unites two highly complex fragments utilizing a Ru-catalyzed alkene-alkyne coupling. This type of coupling typically generates branched products; however, through a detailed investigation, we are now able to demonstrate that subtle structural changes to the substrates can alter the selectivity to favor the formation of the linear product. The synthesis of the fragments features a number of atom-economical transformations which are highlighted by the discovery of an engineered enzyme to perform a dynamic kinetic reduction of a β-ketoester to establish the absolute stereochemistry of the southern tetrahydropyran ring with high levels of enantioselectivity.
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Affiliation(s)
- Barry M. Trost
- Department of Chemistry, Stanford University, Stanford, California 94305-5080
| | - Craig E. Stivala
- Department of Chemistry, Stanford University, Stanford, California 94305-5080
| | - Daniel R. Fandrick
- Department of Chemistry, Stanford University, Stanford, California 94305-5080
| | - Kami L. Hull
- Department of Chemistry, Stanford University, Stanford, California 94305-5080
| | - Audris Huang
- Department of Chemistry, Stanford University, Stanford, California 94305-5080
| | - Caroline Poock
- Department of Chemistry, Stanford University, Stanford, California 94305-5080
| | - Rainer Kalkofen
- Department of Chemistry, Stanford University, Stanford, California 94305-5080
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18
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Bai Y, Shen X, Li Y, Dai M. Total Synthesis of (-)-Spinosyn A via Carbonylative Macrolactonization. J Am Chem Soc 2016; 138:10838-41. [PMID: 27510806 DOI: 10.1021/jacs.6b07585] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Spinosyn A (1), a complex natural product featuring a unique 5,6,5,12-fused tetracyclic core structure, is the major component of spinosad, an organic insecticide and an FDA-approved agent used worldwide. Herein, we report an efficient total synthesis of (-)-spinosyn A with 15 steps in the longest linear sequence and 23 steps total from readily available compounds 14 and 23. The synthetic approach features several important catalytic transformations including a chiral amine-catalyzed intramolecular Diels-Alder reaction to afford 22 in excellent diastereoselectivity, a one-step gold-catalyzed propargylic acetate rearrangement to convert 28 to α-iodoenone 31, an unprecedented palladium-catalyzed carbonylative Heck macrolactonization to form the 5,12-fused macrolactone in one step, and a gold-catalyzed Yu glycosylation to install the challenging β-forosamine. This total synthesis is highly convergent and modular, thus offering opportunities to synthesize spinosyn analogues in order to address the emerging cross-resistance problems.
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Affiliation(s)
- Yu Bai
- Department of Chemistry and Center for Cancer Research, Purdue University , West Lafayette, Indiana 47907, United States
| | - Xingyu Shen
- Department of Chemistry and Center for Cancer Research, Purdue University , West Lafayette, Indiana 47907, United States
| | - Yong Li
- Department of Chemistry and Center for Cancer Research, Purdue University , West Lafayette, Indiana 47907, United States
| | - Mingji Dai
- Department of Chemistry and Center for Cancer Research, Purdue University , West Lafayette, Indiana 47907, United States
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Molenda MA, Baś S, Mlynarski J. A Concise Organocatalytic Synthesis of 3-Deoxy-2-ulosonic Acids throughCinchona-Alkaloid-Promoted Aldol Reactions of Pyruvate. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600784] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Marta A. Molenda
- Faculty of Chemistry; Jagiellonian University; Ingardena 3 30-060 Krakow Poland
| | - Sebastian Baś
- Faculty of Chemistry; Jagiellonian University; Ingardena 3 30-060 Krakow Poland
| | - Jacek Mlynarski
- Faculty of Chemistry; Jagiellonian University; Ingardena 3 30-060 Krakow Poland
- Institute of Organic Chemistry; Polish Academy of Sciences; Kasprzaka 44/52 Warsaw Poland
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Zhang B, Han F, Wang L, Li D, Yang D, Yang X, Yang J, Li X, Zhao D, Wang R. Catalytic Asymmetric Michael Reaction of 5H-Oxazol-4-Ones with α,β-Unsaturated Acyl Imidazoles. Chemistry 2015; 21:17234-8. [DOI: 10.1002/chem.201503105] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Revised: 10/02/2015] [Indexed: 12/24/2022]
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21
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Molenda MA, Baś S, El-Sepelgy O, Stefaniak M, Mlynarski J. Chemistry of Pyruvate Enolates:anti-Selective Direct Aldol Reactions of Pyruvate Ester with Sugar Aldehydes Promoted by a Dinuclear Zinc Catalyst. Adv Synth Catal 2015. [DOI: 10.1002/adsc.201500169] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Trost BM, Bartlett MJ. ProPhenol-catalyzed asymmetric additions by spontaneously assembled dinuclear main group metal complexes. Acc Chem Res 2015; 48:688-701. [PMID: 25650587 PMCID: PMC4365908 DOI: 10.1021/ar500374r] [Citation(s) in RCA: 142] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2014] [Indexed: 01/27/2023]
Abstract
The development of catalytic enantioselective transformations has been the focus of many research groups over the past half century and is of paramount importance to the pharmaceutical and agrochemical industries. Since the award of the Nobel Prize in 2001, the field of enantioselective transition metal catalysis has soared to new heights, with the development of more efficient catalysts and new catalytic transformations at increasing frequency. Furthermore, catalytic reactions that allow higher levels of redox- and step-economy are being developed. Thus, alternatives to asymmetric alkene dihydroxylation and the enantioselective reduction of α,β-unsaturated ketones can invoke more strategic C-C bond forming reactions, such as asymmetric aldol reactions of an aldehyde with α-hydroxyketone donors or enantioselective alkynylation of an aldehyde, respectively. To facilitate catalytic enantioselective addition reactions, including the aforementioned aldol and alkynylation reactions, our lab has developed the ProPhenol ligand. In this Account, we describe the development and application of the ProPhenol ligand for asymmetric additions of both carbon- and heteroatom-based nucleophiles to various electrophiles. The ProPhenol ligand spontaneously forms chiral dinuclear metal complexes when treated with an alkyl metal reagent, such as Et2Zn or Bu2Mg. The resulting complex contains both a Lewis acidic site to activate an electrophile and a Brønsted basic site to deprotonate a pronucleophile. Initially, our research focused on the use of Zn-ProPhenol complexes to facilitate the direct aldol reaction. Fine tuning of the reaction through ligand modification and the use of additives enabled the direct aldol reaction to proceed in high yields and stereoselectivities with a broad range of donor substrates, including acetophenones, methyl ynones, methyl vinyl ketone, acetone, α-hydroxy carbonyl compounds, and glycine Schiff bases. Additionally, an analogous magnesium ProPhenol complex was used to facilitate enantioselective diazoacetate aldol reactions with aryl, α,β-unsaturated, and aliphatic aldehydes. The utility of bimetallic ProPhenol catalysts was extended to asymmetric additions with a wide range of substrate combinations. Effective pronucleophiles include oxazolones, 2-furanone, nitroalkanes, pyrroles, 3-hydroxyoxindoles, alkynes, meso-1,3-diols, and dialkyl phosphine oxides. These substrates were found to be effective with a number of electrophiles, including aldehydes, imines, nitroalkenes, acyl silanes, vinyl benzoates, and α,β-unsaturated carbonyls. A truly diverse range of enantioenriched compounds have been prepared using the ProPhenol ligand, and the commercial availability of both ligand enantiomers makes it ideally suited for the synthesis of complex molecules. To date, enantioselective ProPhenol-catalyzed reactions have been used in the synthesis of more than 20 natural products.
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Affiliation(s)
- Barry M. Trost
- Department of Chemistry, Stanford
University, Stanford, California 94305-5080, United States
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Chiral Bimetallic Lewis Acids. TOP ORGANOMETAL CHEM 2015. [DOI: 10.1007/3418_2015_153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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24
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Mineyeva IV, Masyuk VS, Kovalenko VN, Bandarenko MM. (4S,6R)-4-methyl-6-pentyltetrahydro-2H-pyran-2-one as an efficient intermediate in the preparation of chiral building blocks with methyl-branched carbon skeleton. Application to the synthesis of bioactive compounds. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2014. [DOI: 10.1134/s1070428014110141] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Trost BM, Miege F. Development of ProPhenol ligands for the diastereo- and enantioselective synthesis of β-hydroxy-α-amino esters. J Am Chem Soc 2014; 136:3016-9. [PMID: 24502188 PMCID: PMC3985890 DOI: 10.1021/ja4129394] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A zinc-ProPhenol-catalyzed direct asymmetric aldol reaction between glycine Schiff bases and aldehydes is reported. The design and synthesis of new ProPhenol ligands bearing 2,5-trans-disubstituted pyrrolidines was essential for the success of this process. The transformation operates at room temperature and affords syn β-hydroxy-α-amino esters in high yields with good to excellent levels of diastereo- and enantioselectivity.
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Affiliation(s)
- Barry M Trost
- Department of Chemistry, Stanford University , Stanford, California 94305-5080, United States
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Chatterjee B, Bera S, Mondal D. Julia–Kocienski olefination: a key reaction for the synthesis of macrolides. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.tetasy.2013.09.027] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Liu J, He XF, Wang GH, Merino EF, Yang SP, Zhu RX, Gan LS, Zhang H, Cassera MB, Wang HY, Kingston DGI, Yue JM. Aphadilactones A-D, four diterpenoid dimers with DGAT inhibitory and antimalarial activities from a Meliaceae plant. J Org Chem 2013; 79:599-607. [PMID: 24344740 DOI: 10.1021/jo402340h] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Aphadilactones A-D (1-4), four diastereoisomers possessing an unprecedented carbon skeleton, were isolated from the Meliaceae plant Aphanamixis grandifolia. Their challenging structures and absolute configurations were determined by a combination of spectroscopic data, chemical degradation, fragment synthesis, experimental CD spectra, and ECD calculations. Aphadilactone C (3) with the 5S,11S,5'S,11'S configuration showed potent and selective inhibition against the diacylglycerol O-acyltransferase-1 (DGAT-1) enzyme (IC50 = 0.46 ± 0.09 μM, selectivity index > 217) and is the strongest natural DGAT-1 inhibitor discovered to date. In addition, compounds 1-4 showed significant antimalarial activities with IC50 values of 190 ± 60, 1350 ± 150, 170 ± 10, and 120 ± 50 nM, respectively.
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Affiliation(s)
- Jia Liu
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences , 555 Zu Chong Zhi Road, Shanghai 201203, P. R. China
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Lejkowski M, Banerjee P, Raabe G, Runsink J, Gais HJ. Spiro- and Bicycloannulation of Sulfoximine-Substituted 2-Hydroxy-dihydropyrans: Enantioselective Synthesis of Spiroketals, Spiroethers, and Oxabicycles and Structure of Dihydropyran Oxocarbenium Ions. European J Org Chem 2013. [DOI: 10.1002/ejoc.201301461] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Trost BM, Michaelis DJ, Malhotra S. Total synthesis of (-)-18-epi-peloruside A: an alkyne linchpin strategy. Org Lett 2013; 15:5274-7. [PMID: 24490808 PMCID: PMC3939827 DOI: 10.1021/ol4024997] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A convergent synthetic route toward cytotoxic agent peloruside A that hinges on the use of an alkyne linchpin to assemble the natural product is described. Other highlights of this synthesis include an asymmetric desymmetrization reaction of a 1,3-diol, a one-pot conversion of a dibromoolefin to a stereodefined enone, and a diastereoselective aldol condensation. Misassignment of the absolute stereochemistry of the C18 stereocenter in our synthesis provided the natural product epimeric at the C18 ethyl stereocenter.
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Affiliation(s)
- Barry M. Trost
- Department of Chemistry, Stanford University, Stanford, CA 94305-5080, United States
| | - David J. Michaelis
- Department of Chemistry, Stanford University, Stanford, CA 94305-5080, United States
| | - Sushant Malhotra
- Department of Chemistry, Stanford University, Stanford, CA 94305-5080, United States
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Trost BM, Michaelis DJ, Truica MI. Dinuclear zinc-ProPhenol-catalyzed enantioselective α-hydroxyacetate aldol reaction with activated ester equivalents. Org Lett 2013; 15:4516-9. [PMID: 23947595 DOI: 10.1021/ol402081p] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An enantioselective α-hydroxyacetate aldol reaction that employs N-acetyl pyrroles as activated ester equivalents and generates syn 1,2-diols in good yield and diastereoselectivity is reported. This dinuclear zinc-ProPhenol-catalyzed transformation proceeds with high enantioselectivity with a wide variety of substrates including aryl, alyl, and alkenyl aldehydes. The resulting α,β-dihydroxy activated esters are versatile intermediates for the synthesis of a variety of carboxylic acid derivatives including amides, esters, and unsymmetrical ketones.
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Affiliation(s)
- Barry M Trost
- Department of Chemistry, Stanford University, Stanford, California 94305-5080, USA.
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Trost BM, Hirano K. Highly Stereoselective Synthesis of α-Alkyl-α-Hydroxycarboxylic Acid Derivatives Catalyzed by a Dinuclear Zinc Complex. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201201116] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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36
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Trost BM, Hirano K. Highly stereoselective synthesis of α-alkyl-α-hydroxycarboxylic acid derivatives catalyzed by a dinuclear zinc complex. Angew Chem Int Ed Engl 2012; 51:6480-3. [PMID: 22644705 DOI: 10.1002/anie.201201116] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2012] [Indexed: 11/05/2022]
Abstract
A dinuclear zinc-ProPhenol catalyst enables highly enantioselective nitro-Michael reactions with oxazol-4(5H)-ones as nucleophilic substrates (see scheme, Nap = 2-naphthyl). This work highlights the utility of the ProPhenol family of ligands. The modular nature of these ligands proved crucial in the optimization of reaction conditions to achieve excellent stereoselectivities.
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Affiliation(s)
- Barry M Trost
- Department of Chemistry, Stanford University, Stanford, CA 94305-5080, USA.
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Diez PS, Micalizio GC. Convergent synthesis of deoxypropionates. Angew Chem Int Ed Engl 2012; 51:5152-6. [PMID: 22488893 DOI: 10.1002/anie.201200035] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2012] [Revised: 02/20/2012] [Indexed: 11/11/2022]
Affiliation(s)
- Peter S Diez
- Department of Chemistry, The Scripps Research Institute, 130 Scripps Way #3A2, Jupiter, FL 33458, USA
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Trost BM, Seganish WM, Chung CK, Amans D. Total synthesis of laulimalide: synthesis of the northern and southern fragments. Chemistry 2012; 18:2948-60. [PMID: 22307837 PMCID: PMC3517066 DOI: 10.1002/chem.201102898] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2011] [Indexed: 11/07/2022]
Abstract
The first stage in the development of a synthetic route for the total synthesis of laulimalide (1) is described. Our retrosynthetic analysis envisioned a novel macrocyclization route to the natural product by using a Ru-catalyzed alkene-alkyne coupling. This would be preceded by an esterification of the C19 hydroxyl group, joining together two equally sized synthons, the northern fragment 7 and the southern fragment 8. Our first generation approach to the northern fragment entailed a key sequential Ru/Pd coupling sequence to assemble the dihydropyran. The key reactions proceeded smoothly, but the inability to achieve a key olefin migration led to the development of an alternative route based on an asymmetric dinuclear Zn-catalyzed aldol reaction of a hydroxyl acylpyrrole. This key reaction led to the desired diol adduct 66 with excellent syn/anti selectivity (10:1), and allowed for the successful completion of the northern fragment 7. The key step for the synthesis of the southern fragment was a chemoselective Rh-catalyzed cycloisomerization reaction to form the dihydropyran ring from a diyne precursor. This reaction proved to be selective for the formation of a six-membered ring, over a seven. The use of an electron-deficient bidentate phosphine allowed for the reaction to proceed with a reduced catalyst loading.
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Affiliation(s)
- Barry M Trost
- Department of Chemistry, Stanford University, Stanford, California 94305-5080, USA.
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Saha P, Ghosh P, Sultana S, Saikia AK. Diastereoselective synthesis of substituted dihydropyrans via an oxonium–ene cyclization reaction. Org Biomol Chem 2012; 10:8730-8. [DOI: 10.1039/c2ob26088c] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Goswami A, Saikia PP, Saikia B, Chaturvedi D, Barua NC. An improved stereoselective total synthesis of (R)-rugulactone. Tetrahedron Lett 2011. [DOI: 10.1016/j.tetlet.2011.07.109] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Bondalapati S, Reddy UC, Saha P, Saikia AK. An efficient synthesis of dihydro- and tetrahydropyrans via oxonium–ene cyclization reaction. Org Biomol Chem 2011; 9:3428-38. [DOI: 10.1039/c1ob00033k] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Silva, Jr. LF, Olofsson B. Hypervalent iodine reagents in the total synthesis of natural products. Nat Prod Rep 2011; 28:1722-54. [DOI: 10.1039/c1np00028d] [Citation(s) in RCA: 247] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Nguyen TL, Xu X, Gussio R, Ghosh AK, Hamel E. The assembly-inducing laulimalide/peloruside a binding site on tubulin: molecular modeling and biochemical studies with [³H]peloruside A. J Chem Inf Model 2010; 50:2019-28. [PMID: 21028850 DOI: 10.1021/ci1002894] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We used synthetic peloruside A for the commercial preparation of [³H]peloruside A. The radiolabeled compound bound to preformed tubulin polymer in amounts stoichiometric with the polymer's tubulin content, with an apparent K(d) value of 0.35 μM. A less active peloruside A analogue, (11-R)-peloruside A and laulimalide acted as competitive inhibitors of the binding of the [³H]peloruside A, with apparent K(i) values of 9.3 and 0.25 μM, respectively. Paclitaxel, epothilone B, and discodermolide had essentially no ability to inhibit [³H]peloruside A binding, confirming that these compounds bind to a different site on tubulin polymer. We modeled both laulimalide and peloruside A into the binding site on β-tubulin that was identified by Huzil et al. (J. Mol. Biol. 2008, 378, 1016-1030), but our model provides a more reasonable structural basis for the protein-ligand interaction. There is a more complete desolvation of the peloruside A ligand and a greater array of favorable hydrophobic and electrostatic interactions exhibited by peloruside A at its β-tubulin binding site. In addition, the protein architecture in our peloruside A binding model was suitable for binding laulimalide. With the generation of both laulimalide and peloruside A binding models, it was possible to delineate the structural basis for the greater activity of laulimalide relative to peloruside A and to rationalize the known structure-activity relationship data for both compounds.
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Affiliation(s)
- Tam Luong Nguyen
- Target Structure-Based Drug Discovery Group, SAIC-Frederick, Inc., National Cancer Institute at Frederick, Frederick, Maryland 21702, USA
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Misaki T, Takimoto G, Sugimura T. Direct Asymmetric Aldol Reaction of 5H-Oxazol-4-ones with Aldehydes Catalyzed by Chiral Guanidines. J Am Chem Soc 2010; 132:6286-7. [DOI: 10.1021/ja101216x] [Citation(s) in RCA: 142] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tomonori Misaki
- Graduate School of Material Science, University of Hyogo, 3-2-1 Kohto, Kamigori, Hyogo 678-1297, Japan
| | - Gouta Takimoto
- Graduate School of Material Science, University of Hyogo, 3-2-1 Kohto, Kamigori, Hyogo 678-1297, Japan
| | - Takashi Sugimura
- Graduate School of Material Science, University of Hyogo, 3-2-1 Kohto, Kamigori, Hyogo 678-1297, Japan
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