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Reek JNH, de Bruin B, Pullen S, Mooibroek TJ, Kluwer AM, Caumes X. Transition Metal Catalysis Controlled by Hydrogen Bonding in the Second Coordination Sphere. Chem Rev 2022; 122:12308-12369. [PMID: 35593647 PMCID: PMC9335700 DOI: 10.1021/acs.chemrev.1c00862] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Transition metal catalysis is of utmost importance for the development of sustainable processes in academia and industry. The activity and selectivity of metal complexes are typically the result of the interplay between ligand and metal properties. As the ligand can be chemically altered, a large research focus has been on ligand development. More recently, it has been recognized that further control over activity and selectivity can be achieved by using the "second coordination sphere", which can be seen as the region beyond the direct coordination sphere of the metal center. Hydrogen bonds appear to be very useful interactions in this context as they typically have sufficient strength and directionality to exert control of the second coordination sphere, yet hydrogen bonds are typically very dynamic, allowing fast turnover. In this review we have highlighted several key features of hydrogen bonding interactions and have summarized the use of hydrogen bonding to program the second coordination sphere. Such control can be achieved by bridging two ligands that are coordinated to a metal center to effectively lead to supramolecular bidentate ligands. In addition, hydrogen bonding can be used to preorganize a substrate that is coordinated to the metal center. Both strategies lead to catalysts with superior properties in a variety of metal catalyzed transformations, including (asymmetric) hydrogenation, hydroformylation, C-H activation, oxidation, radical-type transformations, and photochemical reactions.
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Affiliation(s)
- Joost N H Reek
- Homogeneous and Supramolecular Catalysis, Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.,InCatT B.V., Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Bas de Bruin
- Homogeneous and Supramolecular Catalysis, Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Sonja Pullen
- Homogeneous and Supramolecular Catalysis, Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Tiddo J Mooibroek
- Homogeneous and Supramolecular Catalysis, Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | | | - Xavier Caumes
- InCatT B.V., Science Park 904, 1098 XH Amsterdam, The Netherlands
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Abstract
A convergent, stereocontrolled total synthesis of psymberin, an architecturally complex marine antitumor agent, has been achieved in 27 steps from the known aldehyde 8. Highlights of this synthesis include a novel and efficient transannular Michael addition/lactone reduction sequence to construct the highly substituted 2,6- trans-tetrahydropyran, a diastereoselective IBr-induced iodocarbonate cyclization to introduce the C17 stereogenic center, and a Diels-Alder/aromatization reaction to install the highly substituted aromatic ring.
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Affiliation(s)
- Jie Yu
- State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Genomics , Peking University Shenzhen Graduate School , Xili, Nanshan District, Shenzhen 518055 , China
| | - Mingze Yang
- State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Genomics , Peking University Shenzhen Graduate School , Xili, Nanshan District, Shenzhen 518055 , China
| | - Yian Guo
- State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Genomics , Peking University Shenzhen Graduate School , Xili, Nanshan District, Shenzhen 518055 , China
| | - Tao Ye
- State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Genomics , Peking University Shenzhen Graduate School , Xili, Nanshan District, Shenzhen 518055 , China
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Tomás-Mendivil E, Cadierno V, Menéndez MI, López R. Unmasking the Action of Phosphinous Acid Ligands in Nitrile Hydration Reactions Catalyzed by Arene-Ruthenium(II) Complexes. Chemistry 2015; 21:16874-86. [PMID: 26448635 DOI: 10.1002/chem.201503076] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2015] [Indexed: 01/25/2023]
Abstract
The catalytic hydration of benzonitrile and acetonitrile has been studied by employing different arene-ruthenium(II) complexes with phosphinous (PR2OH) and phosphorous acid (P(OR)2OH) ligands as catalysts. Marked differences in activity were found, depending on the nature of both the P-donor and η(6)-coordinated arene ligand. Faster transformations were always observed with the phosphinous acids. DFT computations unveiled the intriguing mechanism of acetonitrile hydration catalyzed by these arene-ruthenium(II) complexes. The process starts with attack on the nitrile carbon atom of the hydroxyl group of the P-donor ligand instead of on a solvent water molecule, as previously suggested. The experimental results presented herein for acetonitrile and benzonitrile hydration catalyzed by different arene-ruthenium(II) complexes could be rationalized in terms of such a mechanism.
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Affiliation(s)
- Eder Tomás-Mendivil
- Laboratorio de Compuestos Organometálicos y, Catálisis (Unidad Asociada al CSIC), Centro de Innovación en Química Avanzada (ORFEO-CINQA) and, Departamento de Química Orgánica e Inorgánica, Universidad de Oviedo, Julián Clavería 8, 33006 Oviedo (Spain)
| | - Victorio Cadierno
- Laboratorio de Compuestos Organometálicos y, Catálisis (Unidad Asociada al CSIC), Centro de Innovación en Química Avanzada (ORFEO-CINQA) and, Departamento de Química Orgánica e Inorgánica, Universidad de Oviedo, Julián Clavería 8, 33006 Oviedo (Spain).
| | - María I Menéndez
- Departamento de Química Física y Analítica, Universidad de Oviedo, Julián Clavería 8, 33006 Oviedo (Spain)
| | - Ramón López
- Departamento de Química Física y Analítica, Universidad de Oviedo, Julián Clavería 8, 33006 Oviedo (Spain).
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Synthetic Applications of the Parkins Nitrile Hydration Catalyst [PtH{(PMe2O)2H}(PMe2OH)]: A Review. APPLIED SCIENCES-BASEL 2015. [DOI: 10.3390/app5030380] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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5
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Kim SK, Bommareddy A, VanWert AL. Pederin, Psymberin and the Structurally Related Mycalamides: Synthetic Aspects and Biological Activities. HANDBOOK OF ANTICANCER DRUGS FROM MARINE ORIGIN 2014. [PMCID: PMC7123710 DOI: 10.1007/978-3-319-07145-9_32] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Pederin, psymberin, and mycalamides are related members of a relatively new family of potent natural antiviral and antitumor compounds originally isolated from marine sponges in 1988. This natural family of chemicals is of great interest to medicinal chemists and biologists, stemming from its extremely low abundance in source organisms and strikingly potent biological activity. They have clearly emerged as promising new synthetic targets, and are the focus of quite an interdisciplinary approach to molecular characterization. In this chapter we review diverse synthetic approaches to this family of natural products that has been demonstrating remarkable biological activity. We discuss relevant history, biological origins with the latest information on source organisms and their hosts, in-depth synthetic approaches, and biological data supporting their potential as therapeutic compounds.
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Affiliation(s)
- Se-Kwon Kim
- grid.412576.30000000107198994Department of Marine-Bio Convergence Science, Pukyong National University, Busan, Korea, Republic of (South Korea)
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6
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Tomás-Mendivil E, Menéndez-Rodríguez L, Francos J, Crochet P, Cadierno V. Investigation of binap-based hydroxyphosphine arene–ruthenium(ii) complexes as catalysts for nitrile hydration. RSC Adv 2014. [DOI: 10.1039/c4ra12013b] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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García-Álvarez R, Francos J, Tomás-Mendivil E, Crochet P, Cadierno V. Metal-catalyzed nitrile hydration reactions: The specific contribution of ruthenium. J Organomet Chem 2014. [DOI: 10.1016/j.jorganchem.2013.11.042] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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8
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Zhang Y, Luo T, Yang Z. Strategic innovation in the total synthesis of complex natural products using gold catalysis. Nat Prod Rep 2014; 31:489-503. [DOI: 10.1039/c3np70075e] [Citation(s) in RCA: 119] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
This review has been organized from the perspective of synthetic target families, with emphasis on the use of gold-catalyzed transformations and cascade reactions that significantly increase molecular complexity.
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Affiliation(s)
- Yun Zhang
- Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Peking University Shenzhen Graduate School
- Shenzhen 518055, China
| | - Tuoping Luo
- Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, and Beijing National Laboratory for Molecular Science (BNLMS)
- Peking-Tsinghua Center for Life Sciences
- Peking University
- Beijing 100871, China
| | - Zhen Yang
- Laboratory of Chemical Genomics
- School of Chemical Biology and Biotechnology
- Peking University Shenzhen Graduate School
- Shenzhen 518055, China
- Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, and Beijing National Laboratory for Molecular Science (BNLMS)
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Bielitza M, Pietruszka J. Psymberin - biologische Eigenschaften und Ansätze zu Total- und Analogasynthesen. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201301259] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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10
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Bielitza M, Pietruszka J. The psymberin story--biological properties and approaches towards total and analogue syntheses. Angew Chem Int Ed Engl 2013; 52:10960-85. [PMID: 24105772 DOI: 10.1002/anie.201301259] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2013] [Indexed: 11/06/2022]
Abstract
Psymberin is a marine natural product which has attracted a great deal of interest since its isolation: While the highly cytotoxic compound was detected early on as an ingredient in a marine sponge, it took over a decade and 600 additional samples for the structure to eventually be assigned. In the last eight years fascinating synthetic and biosynthetic investigations have led to a more detailed understanding as well as a new starting point for structure-activity studies towards new antitumor compounds. The Review gives an in-depth insight into the progress in the field of the marine polyketide psymberin and demonstrates how organic synthesis is influencing neighboring scientific subjects.
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Affiliation(s)
- Max Bielitza
- Institut für Bioorganische Chemie der Universität Düsseldorf im Forschungszentrum Jülich, Stetternicher Forst, Geb. 15.8, 52426 Jülich (Germany) http://www.iboc.uni-duesseldorf.de.
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11
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Bielitza M, Pietruszka J. Synthesis of 8-Desmethoxy Psymberin: A Putative Biosynthetic Intermediate Towards the Marine Polyketide Psymberin. Chemistry 2013; 19:8300-8. [DOI: 10.1002/chem.201203149] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2012] [Indexed: 11/10/2022]
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Feng Y, Jiang X, De Brabander JK. Studies toward the unique pederin family member psymberin: full structure elucidation, two alternative total syntheses, and analogs. J Am Chem Soc 2012; 134:17083-93. [PMID: 23004238 PMCID: PMC3482988 DOI: 10.1021/ja3057612] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Two synthetic approaches to psymberin have been accomplished. A highly convergent first generation synthesis led to the complete stereochemical assignment and demonstrated that psymberin and irciniastatin A are identical compounds. This synthesis featured a diastereoselective aldol coupling between the aryl fragment and a central tetrahydropyran core and a novel one-pot procedure to convert an amide, via intermediacy of a sensitive methyl imidate, to the N-acyl aminal reminiscent of psymberin. The highlights of the second generation synthesis include an efficient iridium-catalyzed enantioselective bisallylation of neopentyl glycol and a stepwise Sonogashira coupling/cycloisomerization/reduction sequence to construct the dihydroisocoumarin unit. The two synthetic avenues were achieved in 17-18 steps (longest linear sequence, ~14-15 isolations) from 3 fragments prepared in 7-8 (first generation) and 3-8 (second generation) steps each. This convergent approach allowed for the preparation of sufficient amounts of psymberin (~ 0.5 g) for follow-up biological studies. Meanwhile, our highly flexible strategy enabled the design and synthesis of multiple analogs, including a psymberin-pederin hybrid, termed psympederin, that proved crucial to a comprehensive understanding of the chemical biology of psymberin and related compounds that will be described in a subsequent manuscript.
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Affiliation(s)
- Yu Feng
- Department of Biochemistry, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas, Texas 75390-9038, United States
| | - Xin Jiang
- Department of Biochemistry, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas, Texas 75390-9038, United States
| | - Jef K. De Brabander
- Department of Biochemistry, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas, Texas 75390-9038, United States
- Harold C. Simmons Comprehensive Cancer Center, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas, Texas 75390-9038, United States
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García-Álvarez R, García-Garrido SE, Díez J, Crochet P, Cadierno V. Arene-Ruthenium(II) and Bis(allyl)-Ruthenium(IV) Complexes Containing 2-(Diphenylphosphanyl)pyridine Ligands: Potential Catalysts for Nitrile Hydration Reactions? Eur J Inorg Chem 2012. [DOI: 10.1002/ejic.201200592] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Byeon SR, Park H, Kim H, Hong J. Stereoselective Synthesis of 2,6-trans-Tetrahydropyran via Primary Diamine-Catalyzed Oxa-Conjugate Addition Reaction of α,β-Unsaturated Ketone: Total Synthesis of Psymberin. Org Lett 2011; 13:5816-9. [DOI: 10.1021/ol2024289] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Seong Rim Byeon
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States, and College of Pharmacy, Ajou University, Suwon 443-749, Korea
| | - Heekwang Park
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States, and College of Pharmacy, Ajou University, Suwon 443-749, Korea
| | - Hyoungsu Kim
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States, and College of Pharmacy, Ajou University, Suwon 443-749, Korea
| | - Jiyong Hong
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States, and College of Pharmacy, Ajou University, Suwon 443-749, Korea
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Abstract
The synthesis of the potent molluscicide cyanolide A has been achieved in 10 steps without the use of protecting groups. The synthesis features a key Sakurai macrocyclization/dimerization reaction that simultaneously forms both tetrahydropyran rings and the macrocycle of the natural product.
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Affiliation(s)
- Michael R Gesinski
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697-2025, USA
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Duschek A, Kirsch SF. 2-Iodoxybenzoic Acid-A Simple Oxidant with a Dazzling Array of Potential Applications. Angew Chem Int Ed Engl 2011; 50:1524-52. [DOI: 10.1002/anie.201000873] [Citation(s) in RCA: 205] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2010] [Indexed: 12/26/2022]
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Duschek A, Kirsch SF. 2-Iodoxybenzoesäure - ein einfaches Oxidationsmittel mit einer Vielfalt an Anwendungsmöglichkeiten. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201000873] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Silva, Jr. LF, Olofsson B. Hypervalent iodine reagents in the total synthesis of natural products. Nat Prod Rep 2011; 28:1722-54. [DOI: 10.1039/c1np00028d] [Citation(s) in RCA: 247] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Anada M, Washio T, Watanabe Y, Takeda K, Hashimoto S. A Short, Catalytic, Asymmetric Synthesis of Diospongins A and B by a One-Pot, Sequential Hetero-Diels-Alder/Mukaiyama-Michael Reaction Process. European J Org Chem 2010. [DOI: 10.1002/ejoc.201001125] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Negishi S, Ishibashi H, Matsuo JI. Asymmetric Synthesis of 2,3-Dihydro-4-pyranones by Reaction of Chiral 3-Alkoxycyclobutanone and Aldehydes. Org Lett 2010; 12:4984-7. [DOI: 10.1021/ol1021355] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Shoko Negishi
- School of Pharmaceutical Sciences, Institute of Medical, Pharmaceutical and Health Sciences, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Hiroyuki Ishibashi
- School of Pharmaceutical Sciences, Institute of Medical, Pharmaceutical and Health Sciences, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Jun-ichi Matsuo
- School of Pharmaceutical Sciences, Institute of Medical, Pharmaceutical and Health Sciences, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
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Abstract
The total synthesis of (+)-iriciniastatin A (psymberin) is reported in 19 steps and 6% overall yield. Key reactions include a highly convergent enolsilane-oxocarbenium ion union to generate the C8-C25 fragment and a late-stage coupling of a hemiaminal and acid chloride to complete the synthesis.
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Affiliation(s)
- Michael T Crimmins
- Kenan and Caudill Laboratories of Chemistry, University of North Carolina at Chapel Hill, North Carolina 27599, USA.
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