1
|
Miyazaki M, Ono M, Otsuka R, Dopfer O, Fujii M. Electronic and vibrational spectroscopies of aromatic clusters with He in a supersonic jet: The case of neutral and cationic phenol-Hen (n = 1 and 2). J Chem Phys 2023; 159:134303. [PMID: 37787127 DOI: 10.1063/5.0169716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 09/15/2023] [Indexed: 10/04/2023] Open
Abstract
Van der Waals clusters composed of He and aromatic molecules provide fundamental information about intermolecular interactions in weakly bound systems. In this study, phenol-helium clusters (PhOH-Hen with n ≤ 2) are characterized for the first time by UV and IR spectroscopies. The S1 ← S0 origin and ionization energy both show small but additive shifts, suggesting π-bound structures of these clusters, a conclusion supported by rotational contour analyses of the S1 origin bands. The OH stretching vibrations of the PhOH moiety in the clusters match with those of bare PhOH in both the S0 and D0 states, illustrating the negligible perturbation of the He atoms on the molecular vibration. Matrix shifts induced by He attachment are discussed based on the observed band positions with the help of complementary quantum chemical calculations. For comparison, the UV and ionization spectra of PhOH-Ne are reported as well.
Collapse
Affiliation(s)
- Mitsuhiko Miyazaki
- Natural Science Division, Faculty of Core Research, Ochanomizu University, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo 112-8610, Japan
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Megumi Ono
- School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Remina Otsuka
- School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
- International Research Frontiers Initiative (IRFI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
- School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
- International Research Frontiers Initiative (IRFI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| |
Collapse
|
2
|
Müller D, Dopfer O. Microsolvation of H 2O +, H 3O +, and CH 3OH 2+ by He in a cryogenic ion trap: structure of solvation shells. Phys Chem Chem Phys 2022; 24:11222-11233. [PMID: 35481676 DOI: 10.1039/d2cp01192a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Due to the weak interactions of He atoms with neutral molecules and ions, the preparation of size-selected clusters for the spectroscopic characterization of their structures, energies, and large amplitude motions is a challenging task. Herein, we generate H2O+Hen (n ≤ 9) and H3O+Hen (n ≤ 5) clusters by stepwise addition of He atoms to mass-selected ions stored in a cryogenic 22-pole ion trap held at 5 K. The population of the clusters as a function of n provides insight into the structure of the first He solvation shell around these ions given by the anisotropy of the cation-He interaction potential. To rationalize the observed cluster size distributions, the structural, energetic, and vibrational properties of the clusters are characterized by ab initio calculations up to the CCSD(T)/aug-cc-pVTZ level. The cluster growth around both the open-shell H2O+ and closed-shell H3O+ ions begins by forming nearly linear and equivalent OH⋯He hydrogen bonds (H-bonds) leading to symmetric structures. The strength of these H-bonds decreases slightly with n due to noncooperative three-body induction forces and is weaker for H3O+ than for H2O+ due to both enhanced charge delocalization and reduced acidity of the OH protons. After filling all available H-bonded sites, addition of further He ligands around H2O+ (n = 3-4) occurs at the electrophilic singly occupied 2pz orbital of O leading to O⋯He p-bonds stabilized by induction and small charge transfer from H2O+ to He. As this orbital is filled for H3O+, He atoms occupy in the n = 4-6 clusters positions between the H-bonded He atoms, leading to a slightly distorted regular hexagon ring for n = 6. Comparison between H3O+Hen and CH3OH2+Hen illustrates that CH3 substitution substantially reduces the acidity of the OH protons, so that only clusters up to n = 2 can be observed. The structure of the solvation sub-shells is visible in both the binding energies and the predicted vibrational OH stretch and bend frequencies.
Collapse
Affiliation(s)
- David Müller
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
| |
Collapse
|
3
|
Miyazaki M, Sakata Y, Ono M, Otsuka R, Ohara R, Dopfer O, Fujii M. Isomer-Selective Spectroscopy and Dynamics of Phenol-Ar n ( n ≤ 5) Clusters. J Phys Chem A 2021; 125:9969-9981. [PMID: 34761924 DOI: 10.1021/acs.jpca.1c04815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Structures and ionization-induced solvation dynamics of phenol-(argon)n clusters, PhOH-Arn (n ≤ 5), were studied by using a variety of isomer-selective photoionization and vibrational spectroscopic techniques. Several higher-energy isomers were found and assigned for the first time by systematically controlling the experimental conditions of the supersonic expansion. This behavior is also confirmed for the PhOH-Kr2 cluster. Solvation structures are elucidated by evaluating systematic shifts in the S1 ← S0 origin and ionization energies obtained by resonance-enhanced photoionization, in addition to the OH stretching frequency obtained by IR photodissociation. Isomer-selective picosecond time-resolved IR spectroscopy for the n = 2 clusters revealed that the dynamics for the ionization-induced intermolecular π → H site-switching reaction strongly depends on the initial isomeric structure. In particular, the reaction time for the (1|1) isomer is 7 ps, while that for (2|0) is <3 ps. This difference shows that the switching time is determined by the distance of the reaction coordinate between the initial π-site and the final OH-site.
Collapse
Affiliation(s)
- Mitsuhiko Miyazaki
- Natural Science Division, Faculty of Core Research, Ochanomizu University, Tokyo 112-8610, Japan.,Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Yuri Sakata
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Megumi Ono
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Remina Otsuka
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Ryuhei Ohara
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany.,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan.,World Research Hub Initiatives, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| |
Collapse
|
4
|
Chatterjee K, Dopfer O. Spectroscopic identification of fragment ions of DNA/RNA building blocks: the case of pyrimidine. Phys Chem Chem Phys 2020; 22:17275-17290. [PMID: 32685941 DOI: 10.1039/d0cp02919j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Pyrimidine (Pym, 1,3-diazine, 1,3-diazabenzene) is an important N-heterocyclic building block of nucleobases. Understanding the structures of its fragment and precursor ions provides insight into its prebiotic and abiotic synthetic route. The long-standing controversial debate about the structures of the primary fragment ions of the Pym+ cation (C4H4N2+, m/z 80) resulting from loss of HCN, C3H3N+ (m/z 53), is closed herein with the aid of a combined approach utilizing infrared photodissociation (IRPD) spectroscopy in the CH and NH stretch ranges (νCH/NH) and density functional theory (DFT) calculations. IRPD spectra of cold Ar/N2-tagged fragment ions reveal that the C3H3N+ population is dominated by cis-/trans-HCCHNCH+ ions (∼90%) along with a minor contribution of the most stable H2CCCNH+ and cis-/trans-HCCHCNH+ isomers (∼10%). We also spectroscopically confirm that the secondary fragment resulting from further loss of HCN, C2H2+ (m/z 26), is the acetylene cation (HCCH+). The spectroscopic characterization of the identified C3H3N+ isomers and their hydrogen-bonded dimers with Ar and N2 provides insight into the acidity of their CH and NH groups. Finally, the vibrational properties of Pym+ in the 3 μm range are probed by IRPD of Pym+-(N2)1-2 clusters, which shows a high π-binding affinity of Pym+ toward a nonpolar hydrophobic ligand. Its νCH spectrum confirms the different acidity of the three nonequivalent CH groups.
Collapse
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik, TU Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, TU Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
| |
Collapse
|
5
|
Wang D, Hattori K, Fujii A. The S∴π hemibond and its competition with the S∴S hemibond in the simplest model system: infrared spectroscopy of the [benzene-(H 2S) n ] + ( n = 1-4) radical cation clusters. Chem Sci 2019; 10:7260-7268. [PMID: 31588295 PMCID: PMC6685351 DOI: 10.1039/c9sc02476j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 06/19/2019] [Indexed: 11/21/2022] Open
Abstract
The S∴π hemibond (two-center three-electron, 2c-3e, bond) is an attractive interaction between a sulfur atom and π electrons. The S∴π hemibond is of essential importance in understanding chemistry of sulfur radical cations, and its roles in biochemistry have recently attracted much interest. In the present study, we observe the S∴π hemibond in the simplest model system in the gas phase. Infrared spectroscopy is applied to the [benzene-(H2S) n ]+ (n = 1-4) radical cation clusters. In n = 1, the CH stretch and SH stretch bands of the benzene and H2S moieties, respectively, are clearly different from those of the neutral molecules but similar to those of the ionic species. These vibrational features show that the positive charge is delocalized over the cluster due to the S∴π hemibond formation. In n = 2-4, the S∴S hemibond and S-π-S multicenter hemibond (three-center five-electron, 3c-5e, bond) can compete with the S∴π hemibond. The observed vibrational features clearly indicate that the S∴S hemibond formation is superior to the S∴π hemibond and S-π-S multicenter hemibond. Calculations of several dispersion-corrected density functionals are compared with the observations. While all the tested functionals qualitatively catch the feature of the S∴π hemibond, the energy order among the isomers of the different hemibond motifs strongly depends on the functionals. These results demonstrate that the [benzene-(H2S) n ]+ clusters can be a benchmark of density functionals to evaluate the sulfur hemibonds.
Collapse
Affiliation(s)
- Dandan Wang
- Department of Chemistry , Graduate School of Science , Tohoku University , Sendai 980-8578 , Japan .
| | - Keigo Hattori
- Department of Chemistry , Graduate School of Science , Tohoku University , Sendai 980-8578 , Japan .
| | - Asuka Fujii
- Department of Chemistry , Graduate School of Science , Tohoku University , Sendai 980-8578 , Japan .
| |
Collapse
|
6
|
Klyne J, Dopfer O. Protonation and Sequential Microsolvation of 5-Hydroxyindole: Infrared Photodissociation Spectra of 5HIH+–Ln with L = Ar and N2 (n ≤ 3). J Phys Chem B 2018; 122:10700-10713. [DOI: 10.1021/acs.jpcb.8b09023] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Johanna Klyne
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
| |
Collapse
|
7
|
|
8
|
Chatterjee K, Dopfer O. Microhydration of PAH + cations: evolution of hydration network in naphthalene +-(H 2O) n clusters ( n ≤ 5). Chem Sci 2018; 9:2301-2318. [PMID: 29719704 PMCID: PMC5903421 DOI: 10.1039/c7sc05124g] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Accepted: 01/24/2018] [Indexed: 12/15/2022] Open
Abstract
The interaction of polycyclic aromatic hydrocarbon molecules with water (H2O = W) is of fundamental importance in chemistry and biology. Herein, size-selected microhydrated naphthalene cation nanoclusters, Np+-W n (n ≤ 5), are characterized by infrared photodissociation (IRPD) spectroscopy in the C-H and O-H stretch range to follow the stepwise evolution of the hydration network around this prototypical PAH+ cation. The IRPD spectra are highly sensitive to the hydration structure and are analyzed by dispersion-corrected density functional theory calculations (B3LYP-D3/aug-cc-pVTZ) to determine the predominant structural isomers. For n = 1, W forms a bifurcated CH···O ionic hydrogen bond (H-bond) to two acidic CH protons of the bicyclic ring. For n ≥ 2, the formation of H-bonded solvent networks dominates over interior ion solvation, because of strong cooperativity in the former case. For n ≥ 3, cyclic W n solvent structures are attached to the CH protons of Np+. However, while for n = 3 the W3 ring binds in the CH···O plane to Np+, for n ≥ 4 the cyclic W n clusters are additionally stabilized by stacking interactions, leading to sandwich-type configurations. No intracluster proton transfer from Np+ to the W n solvent is observed in the studied size range (n ≤ 5), because of the high proton affinity of the naphthyl radical compared to W n . This is different from microhydrated benzene+ clusters, (Bz-W n )+, for which proton transfer is energetically favorable for n ≥ 4 due to the much lower proton affinity of the phenyl radical. Hence, because of the presence of polycyclic rings, the interaction of PAH+ cations with W is qualitatively different from that of monocyclic Bz+ with respect to interaction strength, structure of the hydration shell, and chemical reactivity. These differences are rationalized and quantified by quantum chemical analysis using the natural bond orbital (NBO) and noncovalent interaction (NCI) approaches.
Collapse
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik , Technische Universität Berlin , Hardenbergstr. 36 , 10623 Berlin , Germany . ; Tel: +49 30 31423018
| | - Otto Dopfer
- Institut für Optik und Atomare Physik , Technische Universität Berlin , Hardenbergstr. 36 , 10623 Berlin , Germany . ; Tel: +49 30 31423018
| |
Collapse
|
9
|
Klyne J, Schmies M, Miyazaki M, Fujii M, Dopfer O. Stepwise microhydration of aromatic amide cations: water solvation networks revealed by the infrared spectra of acetanilide +-(H 2O) n clusters (n ≤ 3). Phys Chem Chem Phys 2018; 20:3148-3164. [PMID: 28913535 DOI: 10.1039/c7cp04659f] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structure and activity of peptides and proteins strongly rely on their charge state and the interaction with their hydration environment. Here, infrared photodissociation (IRPD) spectra of size-selected microhydrated clusters of cationic acetanilide (AA+, N-phenylacetamide), AA+-(H2O)n with n ≤ 3, are analysed by dispersion-corrected density functional theory calculations at the ωB97X-D/aug-cc-pVTZ level to determine the stepwise microhydration process of this aromatic peptide model. The IRPD spectra are recorded in the informative X-H stretch (νOH, νNH, νCH, amide A, 2800-3800 cm-1) and fingerprint (amide I-II, 1000-1900 cm-1) ranges to probe the preferred hydration motifs and the cluster growth. In the most stable AA+-(H2O)n structures, the H2O ligands solvate the acidic NH proton of the amide by forming a hydrogen-bonded solvent network, which strongly benefits from cooperative effects arising from the excess positive charge. Comparison with neutral AA-H2O reveals the strong impact of ionization on the acidity of the NH proton and the topology of the interaction potential. Comparison with related hydrated formanilide clusters demonstrates the influence of methylation of the amide group (H → CH3) on the shape of the intermolecular potential and the structure of the hydration shell.
Collapse
Affiliation(s)
- Johanna Klyne
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
| | | | | | | | | |
Collapse
|
10
|
Klyne J, Miyazaki M, Fujii M, Dopfer O. Sequential microhydration of cationic 5-hydroxyindole (5HI+): infrared photodissociation spectra of 5HI+–Wn clusters (W = H2O, n ≤ 4). Phys Chem Chem Phys 2018; 20:3092-3108. [DOI: 10.1039/c7cp06132c] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The hydrogen-bonding properties of the acidic OH and NH groups of the 5-hydroxyindole cation are probed by infrared spectroscopy and DFT calculations of its microhydrated clusters.
Collapse
Affiliation(s)
- Johanna Klyne
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Mitsuhiko Miyazaki
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
- Laboratory for Chemistry and Life Science
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| |
Collapse
|
11
|
Shen CC, Tsai TT, Wu JY, Ho JW, Chen YW, Cheng PY. Watching proton transfer in real time: Ultrafast photoionization-induced proton transfer in phenol-ammonia complex cation. J Chem Phys 2017; 147:164302. [PMID: 29096460 DOI: 10.1063/1.5001375] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
In this paper, we give a full account of our previous work [C. C. Shen et al., J. Chem. Phys. 141, 171103 (2014)] on the study of an ultrafast photoionization-induced proton transfer (PT) reaction in the phenol-ammonia (PhOH-NH3) complex using ultrafast time-resolved ion photofragmentation spectroscopy implemented by the photoionization-photofragmentation pump-probe detection scheme. Neutral PhOH-NH3 complexes prepared in a free jet are photoionized by femtosecond 1 + 1 resonance-enhanced multiphoton ionization via the S1 state. The evolving cations are then probed by delayed pulses that result in ion fragmentation, and the ionic dynamics is followed by measuring the parent-ion depletion as a function of the pump-probe delay time. By comparing with systems in which PT is not feasible and the steady-state ion photofragmentation spectra, we concluded that the observed temporal evolutions of the transient ion photofragmentation spectra are consistent with an intracomplex PT reaction after photoionization from the initial non-PT to the final PT structures. Our experiments revealed that PT in [PhOH-NH3]+ cation proceeds in two distinct steps: an initial impulsive wave-packet motion in ∼70 fs followed by a slower relaxation of about 1 ps that stabilizes the system into the final PT configuration. These results indicate that for a barrierless PT system, even though the initial PT motions are impulsive and ultrafast, the time scale to complete the reaction can be much slower and is determined by the rate of energy dissipation into other modes.
Collapse
Affiliation(s)
- Ching-Chi Shen
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Tsung-Ting Tsai
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Jun-Yi Wu
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Jr-Wei Ho
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Yi-Wei Chen
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Po-Yuan Cheng
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| |
Collapse
|
12
|
Zhang L, Li D, Cheng M, Du Y, Zhu Q. Ionization spectroscopies and theoretical calculations of cis and trans 3-fluoro-N-methylaniline-Ar n(n=1,2) van der Waals clusters: Structures and binding energies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 183:177-186. [PMID: 28448955 DOI: 10.1016/j.saa.2017.04.023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Revised: 04/07/2017] [Accepted: 04/16/2017] [Indexed: 06/07/2023]
Abstract
The ab initio and dispersion-corrected density functional theory (DFT) calculations of the van der Waals (vdW) clusters of cis and trans 3-fluoro-N-methylaniline-Arn (3FNMA-Arn) (n=1,2) predict that, for cis and trans 3FNMA-Ar1 clusters, the π-bound geometry with the Ar atom sitting over the ring is the global minimum in both neutral and cationic states, while for cis and trans 3FNMA-Ar2 clusters, the [π|π]-bound sandwich structure with two Ar ligands occupying nearly equivalent π-bound positions above and below the ring plane is the global minimum. The vibronic spectra of cis and trans 3FNMA-Ar1 clusters in the S1 state were recorded by using one-color and two-color resonant two-photon ionization (R2PI) techniques, the comparison of which yields an estimate of the binding energy of cluster in the S1 state. It is found that the linear correlation between the redshift of the S1←S0 electronic transition energy (E1) of cluster and the E1 of the monomer also holds for the Ar clusters of hetero-di-substituted aromatics. By recording the photoionization efficiency (PIE) curves and mass-analyzed threshold ionization (MATI) dissociation spectra of cis and trans 3FNMA-Ar1 clusters, the ionization energies (IE) and binding energies of clusters in the D0 state are obtained. The MATI spectra of the cis and trans 3FNMA-Ar1 cations exhibit significant progressions of the vdW bending mode (bx), indicating the structural changes of the clusters in the bending coordinate upon ionization. The combination of the three kinds of spectroscopic methods provides the binding energies of cis and trans 3FNMA-Ar1 clusters in the S0, S1 and D0 states with good accuracy, and the values estimated by dispersion-corrected DFT calculations compare well with the experimental results. From our studies, the ωB97X-D and TD-ωB97X-D methods using high quality basis set are recommended for studying the intermolecular interaction of such vdW clusters in the ground and excited states.
Collapse
Affiliation(s)
- Lijuan Zhang
- College of Chemistry and Chemical Engineering, Binzhou University, Binzhou, 256600, Shandong, PR China.
| | - Dazhi Li
- College of Chemistry and Chemical Engineering, Binzhou University, Binzhou, 256600, Shandong, PR China
| | - Min Cheng
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, PR China
| | - Yikui Du
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, PR China.
| | - Qihe Zhu
- Beijing National Laboratory of Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, PR China
| |
Collapse
|
13
|
Schütz M, Matsumoto Y, Bouchet A, Öztürk M, Dopfer O. Microsolvation of the pyrrole cation (Py+) with nonpolar and polar ligands: infrared spectra of Py+–Ln with L = Ar, N2, and H2O (n ≤ 3). Phys Chem Chem Phys 2017; 19:3970-3986. [DOI: 10.1039/c6cp07251h] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
IR spectra and dispersion-corrected density functional calculations of pyrrole cluster ions with Ar, N2, and H2O reveal the competition between H-bonding and π-stacking motifs of this prototypical heterocyclic aromatic cation in a hydrophobic and hydrophilic solvent.
Collapse
Affiliation(s)
- Markus Schütz
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | | | - Aude Bouchet
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Murat Öztürk
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| |
Collapse
|
14
|
Chatterjee K, Dopfer O. Infrared spectroscopy of hydrated polycyclic aromatic hydrocarbon cations: naphthalene+–water. Phys Chem Chem Phys 2017; 19:32262-32271. [DOI: 10.1039/c7cp06893j] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The combination of infrared spectroscopy and quantum chemical calculations unravels the salient properties of the bifurcated CH⋯O ionic hydrogen bond typical for the PAH+–H2O interaction.
Collapse
Affiliation(s)
- Kuntal Chatterjee
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| |
Collapse
|
15
|
Bouchet A, Schütz M, Chiavarino B, Crestoni ME, Fornarini S, Dopfer O. IR spectrum of the protonated neurotransmitter 2-phenylethylamine: dispersion and anharmonicity of the NH3(+)-π interaction. Phys Chem Chem Phys 2016; 17:25742-54. [PMID: 25757357 DOI: 10.1039/c5cp00221d] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The structure and dynamics of the highly flexible side chain of (protonated) phenylethylamino neurotransmitters are essential for their function. The geometric, vibrational, and energetic properties of the protonated neutrotransmitter 2-phenylethylamine (H(+)PEA) are characterized in the N-H stretch range by infrared photodissociation (IRPD) spectroscopy of cold ions using rare gas tagging (Rg = Ne and Ar) and anharmonic calculations at the B3LYP-D3/(aug-)cc-pVTZ level including dispersion corrections. A single folded gauche conformer (G) protonated at the basic amino group and stabilized by an intramolecular NH(+)-π interaction is observed. The dispersion-corrected density functional theory calculations reveal the important effects of dispersion on the cation-π interaction and the large vibrational anharmonicity of the NH3(+) group involved in the NH(+)-π hydrogen bond. They allow for assigning overtone and combination bands and explain anomalous intensities observed in previous IR multiple-photon dissociation spectra. Comparison with neutral PEA reveals the large effects of protonation on the geometric and electronic structure.
Collapse
Affiliation(s)
- Aude Bouchet
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, D-10623 Berlin, Germany.
| | | | | | | | | | | |
Collapse
|
16
|
Dopfer O, Fujii M. Probing Solvation Dynamics around Aromatic and Biological Molecules at the Single-Molecular Level. Chem Rev 2016; 116:5432-63. [DOI: 10.1021/acs.chemrev.5b00610] [Citation(s) in RCA: 66] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Otto Dopfer
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Masaaki Fujii
- Laboratory
for Chemistry and Life Science, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| |
Collapse
|
17
|
Miyazaki M, Sakata Y, Schütz M, Dopfer O, Fujii M. Photoionization-induced π ↔ H site switching dynamics in phenol+–Rg (Rg = Ar, Kr) dimers probed by picosecond time-resolved infrared spectroscopy. Phys Chem Chem Phys 2016; 18:24746-54. [DOI: 10.1039/c6cp05016f] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Picosecond time-resolved infrared spectroscopy of phenol–rare gas dimer cations reveal delocalization of a wavepacket of the single rare gas atom above and below phenol in around 100 ps.
Collapse
Affiliation(s)
- Mitsuhiko Miyazaki
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Yuri Sakata
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Markus Schütz
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| |
Collapse
|
18
|
Bouchet A, Schütz M, Dopfer O. Competing Insertion and External Binding Motifs in Hydrated Neurotransmitters: Infrared Spectra of Protonated Phenylethylamine Monohydrate. Chemphyschem 2015; 17:232-43. [PMID: 26584245 DOI: 10.1002/cphc.201500939] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Indexed: 01/29/2023]
Abstract
Hydration has a drastic impact on the structure and function of flexible biomolecules, such as aromatic ethylamino neurotransmitters. The structure of monohydrated protonated phenylethylamine (H(+) PEA-H2 O) is investigated by infrared photodissociation (IRPD) spectroscopy of cold cluster ions by using rare-gas (Rg=Ne and Ar) tagging and dispersion-corrected density functional theory calculations at the B3LYP-D3/aug-cc-pVTZ level. Monohydration of this prototypical neurotransmitter gives an insight into the first step of the formation of its solvation shell, especially regarding the competition between intra- and intermolecular interactions. The spectra of Rg-tagged H(+) PEA-H2 O reveal the presence of a stable insertion structure in which the water molecule is located between the positively charged ammonium group and the phenyl ring of H(+) PEA, acting both as a hydrogen bond acceptor (NH(+) ⋅⋅⋅O) and donor (OH⋅⋅⋅π). Two other nearly equivalent isomers, in which water is externally H bonded to one of the free NH groups, are also identified. The balance between insertion and external hydration strongly depends on temperature.
Collapse
Affiliation(s)
- Aude Bouchet
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623, Berlin, Germany
| | - Markus Schütz
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623, Berlin, Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623, Berlin, Germany.
| |
Collapse
|
19
|
Schütz M, Sakota K, Moritz R, Schmies M, Ikeda T, Sekiya H, Dopfer O. Simultaneous Interaction of Hydrophilic and Hydrophobic Solvents with Ethylamino Neurotransmitter Radical Cations: Infrared Spectra of Tryptamine+-(H2O)m-(N2)n Clusters (m,n ≤ 3). J Phys Chem A 2015; 119:10035-51. [DOI: 10.1021/acs.jpca.5b07408] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Markus Schütz
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, D-10623 Berlin, Germany
| | - Kenji Sakota
- Department
of Chemistry, Faculty of Sciences, and Department of Molecular Chemistry,
Graduate School of Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
| | - Raphael Moritz
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, D-10623 Berlin, Germany
| | - Matthias Schmies
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, D-10623 Berlin, Germany
| | - Takamasa Ikeda
- Department
of Chemistry, Faculty of Sciences, and Department of Molecular Chemistry,
Graduate School of Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
| | - Hiroshi Sekiya
- Department
of Chemistry, Faculty of Sciences, and Department of Molecular Chemistry,
Graduate School of Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
| | - Otto Dopfer
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, D-10623 Berlin, Germany
| |
Collapse
|
20
|
Ishikawa H, Kawasaki T, Inomata R. Infrared Spectroscopy of Phenol−Triethylsilane Dihydrogen-Bonded Cluster and its Cationic Analogues: Intrinsic Strength of the Si–H···H–O Dihydrogen Bond. J Phys Chem A 2015; 119:601-9. [DOI: 10.1021/jp5097508] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Haruki Ishikawa
- Department of Chemistry, School of Science, Kitasato University, Minami-ku, Sagamihara 252-0373, Japan
| | - Takayuki Kawasaki
- Department of Chemistry, School of Science, Kitasato University, Minami-ku, Sagamihara 252-0373, Japan
| | - Risa Inomata
- Department of Chemistry, School of Science, Kitasato University, Minami-ku, Sagamihara 252-0373, Japan
| |
Collapse
|
21
|
Klyne J, Schmies M, Fujii M, Dopfer O. Stepwise Microhydration of Aromatic Amide Cations: Formation of Water Solvation Network Revealed by Infrared Spectra of Formanilide+–(H2O)n Clusters (n ≤ 5). J Phys Chem B 2015; 119:1388-406. [DOI: 10.1021/jp511421h] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Johanna Klyne
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Matthias Schmies
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| | - Masaaki Fujii
- Chemical
Resources Laboratory, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut
für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| |
Collapse
|
22
|
Miyazaki M, Yoshikawa S, Michels F, Misawa K, Ishiuchi SI, Sakai M, Dopfer O, Müller-Dethlefs K, Fujii M. Mass analyzed threshold ionization detected infrared spectroscopy: isomerization activity of the phenol–Ar cluster near the ionization threshold. Phys Chem Chem Phys 2015; 17:2494-503. [DOI: 10.1039/c4cp04584j] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new spectroscopic method reveals the barrier and the crucial role of direct photoionization in the π → H site switching in phenol–Ar.
Collapse
Affiliation(s)
- Mitsuhiko Miyazaki
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Shunpei Yoshikawa
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - François Michels
- The Photon Science Institute and School of Chemistry
- The University of Manchester
- Manchester
- UK
| | - Kentaro Misawa
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Shun-ichi Ishiuchi
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Makoto Sakai
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik
- Technische Universität Berlin
- 10623 Berlin
- Germany
| | - Klaus Müller-Dethlefs
- The Photon Science Institute and School of Chemistry
- The University of Manchester
- Manchester
- UK
| | - Masaaki Fujii
- Chemical Resources Laboratory
- Tokyo Institute of Technology
- Yokohama 226-8503
- Japan
| |
Collapse
|
23
|
Schmies M, Miyazaki M, Fujii M, Dopfer O. Microhydrated aromatic cluster cations: Binding motifs of 4-aminobenzonitrile-(H2O)n cluster cations with n ≤ 4. J Chem Phys 2014; 141:214301. [DOI: 10.1063/1.4901893] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Matthias Schmies
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
| | - Mitsuhiko Miyazaki
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
| |
Collapse
|
24
|
Klyne J, Schmies M, Dopfer O. Microsolvation of the Formanilide Cation (FA+) in a Nonpolar Solvent: Infrared Spectra of FA+–Ln Clusters (L = Ar, N2; n ≤ 8). J Phys Chem B 2014; 118:3005-17. [DOI: 10.1021/jp5011988] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Johanna Klyne
- Institut für Optik
und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse
36, 10623 Berlin, Germany
| | - Matthias Schmies
- Institut für Optik
und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse
36, 10623 Berlin, Germany
| | - Otto Dopfer
- Institut für Optik
und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse
36, 10623 Berlin, Germany
| |
Collapse
|
25
|
Miyazaki M, Takeda A, Schmies M, Sakai M, Misawa K, Ishiuchi SI, Michels F, Müller-Dethlefs K, Dopfer O, Fujii M. Ionization-induced π → H site-switching in phenol–CH4complexes studied using IR dip spectroscopy. Phys Chem Chem Phys 2014; 16:110-6. [DOI: 10.1039/c3cp53533a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
|
26
|
Sakota K, Schütz M, Schmies M, Moritz R, Bouchet A, Ikeda T, Kouno Y, Sekiya H, Dopfer O. Weak hydrogen bonding motifs of ethylamino neurotransmitter radical cations in a hydrophobic environment: infrared spectra of tryptamine+–(N2)n clusters (n ≤ 6). Phys Chem Chem Phys 2014; 16:3798-806. [DOI: 10.1039/c3cp54127d] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
27
|
Schmies M, Patzer A, Schütz M, Miyazaki M, Fujii M, Dopfer O. Microsolvation of the acetanilide cation (AA+) in a nonpolar solvent: IR spectra of AA+–Lnclusters (L = He, Ar, N2; n ≤ 10). Phys Chem Chem Phys 2014; 16:7980-95. [DOI: 10.1039/c4cp00401a] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
28
|
Fournier JA, Wolk AB, Johnson MA. Integration of cryogenic ion vibrational predissociation spectroscopy with a mass spectrometric interface to an electrochemical cell. Anal Chem 2013; 85:7339-44. [PMID: 23767985 DOI: 10.1021/ac401228y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Cryogenic ion vibrational predissociation (CIVP) spectroscopy is used to structurally characterize electrochemically (EC)-generated oxidation products of the benchmark compound reserpine. Ionic products were isolated using EC-electrospray ionization (ESI) coupled to a 25 K ion trap prior to injection into a double-focusing, tandem time-of-flight photofragmentation mass spectrometer. Vibrational predissociation spectroscopy was carried out by photoevaporation of weakly bound N2 adducts over the range 800-3800 cm(-1) in a linear (i.e., single photon) action regime, thus enabling direct comparison of the experimental vibrational pattern with harmonic calculations. The locations of the NH and OH stretching fundamentals are most consistent with formation of 9-hydroxyreserpine, which is a different isomer than considered previously. This approach thus provides a powerful structural dimension for the analysis of electrochemical processes detected with the sensitivity of mass spectrometry.
Collapse
Affiliation(s)
- Joseph A Fournier
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | | | | |
Collapse
|
29
|
Fujii A, Mizuse K. Infrared spectroscopic studies on hydrogen-bonded water networks in gas phase clusters. INT REV PHYS CHEM 2013. [DOI: 10.1080/0144235x.2012.760836] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
30
|
Schmies M, Patzer A, Kruppe S, Miyazaki M, Ishiuchi S, Fujii M, Dopfer O. Microsolvation of the 4‐Aminobenzonitrile Cation (ABN
+
) in a Nonpolar Solvent: IR Spectra of ABN
+
L
n
(L=Ar and N
2
,
n
≤4). Chemphyschem 2012. [DOI: 10.1002/cphc.201200790] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Matthias Schmies
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin (Germany)
| | - Alexander Patzer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin (Germany)
| | - Sarah Kruppe
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin (Germany)
| | - Mitsuhiko Miyazaki
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| | - Shun‐ichi Ishiuchi
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| | - Masaaki Fujii
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin (Germany)
| |
Collapse
|
31
|
Nakamura T, Miyazaki M, Ishiuchi S, Weiler M, Schmies M, Dopfer O, Fujii M. IR Spectroscopy of the 4‐Aminobenzonitrile–Ar Cluster in the S
0
, S
1
Neutral and D
0
Cationic States. Chemphyschem 2012. [DOI: 10.1002/cphc.201200821] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Takashi Nakamura
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| | - Mitsuhiko Miyazaki
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| | - Shun‐ichi Ishiuchi
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| | - Martin Weiler
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| | - Matthias Schmies
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin (Germany)
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin (Germany)
| | - Masaaki Fujii
- Chemical Resources Laboratory, Tokyo Institute of Technology, Yokohama 226‐8503 (Japan)
| |
Collapse
|
32
|
Weiler M, Nakamura T, Sekiya H, Dopfer O, Miyazaki M, Fujii M. Ionization-Induced Solvent Migration in Acetanilide-Methanol Clusters Inferred from Isomer-Selective Infrared Spectroscopy. Chemphyschem 2012; 13:3875-81. [DOI: 10.1002/cphc.201200704] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2012] [Revised: 10/02/2012] [Indexed: 01/02/2023]
|
33
|
Mizuse K, Fujii A. Tuning of the Internal Energy and Isomer Distribution in Small Protonated Water Clusters H+(H2O)4–8: An Application of the Inert Gas Messenger Technique. J Phys Chem A 2012; 116:4868-77. [DOI: 10.1021/jp302030d] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kenta Mizuse
- Department of Chemistry,
Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry,
Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| |
Collapse
|
34
|
Kocevski V, Pejov L. Anharmonic Vibrational Frequency Shifts upon Interaction of Phenol(+) with the Open Shell Ligand O2. The Performance of DFT Methods versus MP2. J Phys Chem A 2012; 116:1939-49. [DOI: 10.1021/jp209801s] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Vancho Kocevski
- Institute of Chemistry,
Faculty of Science, “Sts. Cyril and Methodius University”, P.O. Box 162, 1001 Skopje, Republic
of Macedonia
| | - Ljupčo Pejov
- Institute of Chemistry,
Faculty of Science, “Sts. Cyril and Methodius University”, P.O. Box 162, 1001 Skopje, Republic
of Macedonia
| |
Collapse
|
35
|
Patzer A, Schütz M, Möller T, Dopfer O. Infrared Spectrum and Structure of the Adamantane Cation: Direct Evidence for Jahn-Teller Distortion. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201108937] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
36
|
Patzer A, Schütz M, Möller T, Dopfer O. Infrared Spectrum and Structure of the Adamantane Cation: Direct Evidence for Jahn-Teller Distortion. Angew Chem Int Ed Engl 2012; 51:4925-9. [DOI: 10.1002/anie.201108937] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2011] [Indexed: 11/08/2022]
|
37
|
Fujii M, Dopfer O. Ionisation-induced site switching dynamics in solvated aromatic clusters: phenol–(rare gas)nclusters as prototypical example. INT REV PHYS CHEM 2012. [DOI: 10.1080/0144235x.2012.656013] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
38
|
Ishiuchi SI. Static and Dynamic Structures of Phenol/Ar Clusters Studied by Multiresonance Laser Spectroscopy. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2011. [DOI: 10.1246/bcsj.20110167] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
|
39
|
Dopfer O, Andrei HS, Solcà N. IR Spectra of C2H5+-N2 Isomers: Evidence for Dative Chemical Bonding in the Isolated Ethanediazonium Ion. J Phys Chem A 2011; 115:11466-77. [DOI: 10.1021/jp208084r] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | - Horia-Sorin Andrei
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | - Nicola Solcà
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| |
Collapse
|
40
|
Isomerization reaction in high-n Rydberg states of phenol–Ar/Kr clusters measured by autoionization detected infrared spectroscopy. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.08.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
41
|
Armentano A, Tong X, Riese M, Pimblott SM, Müller-Dethlefs K, Fujii M, Dopfer O. Mass analyzed threshold ionization spectra of phenol⋯Ar2: ionization energy and cation intermolecular vibrational frequencies. Phys Chem Chem Phys 2011; 13:6071-6. [DOI: 10.1039/c004497k] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
42
|
Ishiuchi SI, Miyazaki M, Sakai M, Fujii M, Schmies M, Dopfer O. Ionization-induced π → H site switching dynamics in phenol–Ar3. Phys Chem Chem Phys 2011; 13:2409-16. [DOI: 10.1039/c0cp01926g] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
43
|
Armentano A, Černý J, Riese M, Taherkhani M, Yezzar MB, Müller-Dethlefs K. Spectral shifts and structures of phenol⋯Arn clusters. Phys Chem Chem Phys 2011; 13:6077-84. [DOI: 10.1039/c0cp01370f] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
44
|
Miyazaki M, Takeda A, Ishiuchi SI, Sakai M, Dopfer O, Fujii M. Photoionization-induced large-amplitude pendular motion in phenol+–Kr. Phys Chem Chem Phys 2011; 13:2744-7. [DOI: 10.1039/c0cp01961e] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
45
|
Mizuse K, Fujii A. Infrared photodissociation spectroscopy of H+(H2O)6·Mm (M = Ne, Ar, Kr, Xe, H2, N2, and CH4): messenger-dependent balance between H3O+ and H5O2+ core isomers. Phys Chem Chem Phys 2011; 13:7129-35. [DOI: 10.1039/c1cp20207c] [Citation(s) in RCA: 96] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
46
|
Schmies M, Patzer A, Fujii M, Dopfer O. Structures and IR/UV spectra of neutral and ionic phenol–Arn cluster isomers (n≤ 4): competition between hydrogen bonding and stacking. Phys Chem Chem Phys 2011; 13:13926-41. [DOI: 10.1039/c1cp20676a] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
47
|
Wild DA, Bieske EJ. Infrared Investigations of Negatively Charged Complexes and Clusters. INT REV PHYS CHEM 2010. [DOI: 10.1080/0144235021000060165] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- D. A. Wild
- a School of Chemistry , University of Melbourne , Parkville , Victoria , 3010 , Australia
| | - E. J. Bieske
- a School of Chemistry , University of Melbourne , Parkville , Victoria , 3010 , Australia
| |
Collapse
|
48
|
Tong X, Armentano A, Riese M, BenYezzar M, Pimblott SM, Müller-Dethlefs K, Ishiuchi SI, Sakai M, Takeda A, Fujii M, Dopfer O. Dissociation energetics of the phenol+⋯Ar2 cluster ion: The role of π→H isomerization. J Chem Phys 2010; 133:154308. [DOI: 10.1063/1.3482733] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
49
|
Armentano A, Riese M, Taherkhani M, Ben Yezzar M, Müller-Dethlefs K, Fujii M, Dopfer O. Fragmentation Energetics of the Phenol+···Ar3 Cation Cluster. J Phys Chem A 2010; 114:11139-43. [DOI: 10.1021/jp102491b] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Antonio Armentano
- Photon Science Institute, Dalton Nuclear Institute, and School of Chemistry, The University of Manchester, Manchester, M13 9PL, United Kingdom
| | - Mikko Riese
- Photon Science Institute, Dalton Nuclear Institute, and School of Chemistry, The University of Manchester, Manchester, M13 9PL, United Kingdom
| | - Mehran Taherkhani
- Photon Science Institute, Dalton Nuclear Institute, and School of Chemistry, The University of Manchester, Manchester, M13 9PL, United Kingdom
| | - Med Ben Yezzar
- Photon Science Institute, Dalton Nuclear Institute, and School of Chemistry, The University of Manchester, Manchester, M13 9PL, United Kingdom
| | - Klaus Müller-Dethlefs
- Photon Science Institute, Dalton Nuclear Institute, and School of Chemistry, The University of Manchester, Manchester, M13 9PL, United Kingdom
| | - Masaaki Fujii
- Chemical Resources Laboratory, Tokyo Institute of Technology, 4259 Nagatsuta, Yokohama, 226-8503, Japan
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
| |
Collapse
|
50
|
Walter C, Kritzer R, Schubert A, Meier C, Dopfer O, Engel V. Dissipative Wave Packet Dynamics of Hydrophobic → Hydrophilic Site Switching in Phenol-Ar Clusters. J Phys Chem A 2010; 114:9743-8. [DOI: 10.1021/jp101964e] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ch. Walter
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, Laboratoire de Collisions, Agrégats et Reactivité, IRSAMC, Université Paul Sabatier, 31062 Toulouse, France, and Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | - R. Kritzer
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, Laboratoire de Collisions, Agrégats et Reactivité, IRSAMC, Université Paul Sabatier, 31062 Toulouse, France, and Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | - A. Schubert
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, Laboratoire de Collisions, Agrégats et Reactivité, IRSAMC, Université Paul Sabatier, 31062 Toulouse, France, and Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | | | | | | |
Collapse
|