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Tu D, Li J, Sun F, Yan H, Poater J, Solà M. Cage -···Cage - Interaction: Boron Cluster-Based Noncovalent Bond and Its Applications in Solid-State Materials. JACS AU 2021; 1:2047-2057. [PMID: 34841417 PMCID: PMC8611790 DOI: 10.1021/jacsau.1c00348] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Indexed: 06/13/2023]
Abstract
Carboranes are boron-carbon clusters with important applications in the fields of materials, catalysis, pharmaceuticals, etc. However, the noncovalent interactions that could determine the solid-state structures and properties of such boron clusters have rarely been investigated. Herein, inspired by the coordinate bond in metallacarborane or ferrocene, the boron cluster-based noncovalent interaction (denoted as cage-···cage- interaction) between two nido-carborane clusters was successfully realized by using a pyridinium-based molecular barrier. The X-ray diffraction studies uncover that the cage-···cage- interaction has a contacting distance of 5.4-7.0 Å from centroid to centroid in the systems reported here. Theoretical calculations validate the formation of the noncovalent interaction and disclose its repulsive bonding nature that is overcome thanks to the positively charged pyridinium-based framework. Interestingly, such bulk crystalline materials containing the cage-···cage- interaction show relevant properties such as full-color absorption in the visible light range and important photothermal effect, which are absent for the control compound without carboranes. This study may offer fundamental insights into the boron cluster-based noncovalent interactions and open a new research avenue to rationally design boron cluster-based materials.
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Affiliation(s)
- Deshuang Tu
- State
Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of
Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P. R. China
| | - Jiaxin Li
- State
Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of
Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P. R. China
| | - Fangxiang Sun
- State
Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of
Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P. R. China
| | - Hong Yan
- State
Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of
Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P. R. China
| | - Jordi Poater
- Departament
de Química Inorgànica i Orgànica & Institut
de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franquès 1-11, Barcelona 08028, Catalonia, Spain
- ICREA, Pg. Lluís Companys 23, Barcelona 08010, Spain
| | - Miquel Solà
- Institut
de Química Computacional i Catàlisi and Departament
de Química, Universitat de Girona, C/Maria Aurèlia Capmany,
69, Girona 17003, Catalonia Spain
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2
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Przybytek M. Dispersion Energy of Symmetry-Adapted Perturbation Theory from the Explicitly Correlated F12 Approach. J Chem Theory Comput 2018; 14:5105-5117. [DOI: 10.1021/acs.jctc.8b00470] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michał Przybytek
- Faculty of Chemistry, University of Warsaw, ul. L. Pasteura 1, 02-093 Warsaw, Poland
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3
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Sárosi MB, Lybrand TP. Molecular Dynamics Simulation of Cyclooxygenase-2 Complexes with Indomethacin closo-Carborane Analogs. J Chem Inf Model 2018; 58:1990-1999. [PMID: 30067351 DOI: 10.1021/acs.jcim.8b00275] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Molecular dynamics simulation of carborane-containing ligands in complex with target enzymes is a challenging task due to the unique structure and properties of the carborane substituents and relative lack of appropriate experimental data to help assess the quality of carborane force field parameters. Here, we report results from energy minimization calculations for a series of carborane-amino acid complexes using carborane force field parameters published previously in the literature and adapted for use with the AMBER ff99SB and ff14SB potential functions. These molecular mechanics results agree well with quantum mechanical geometry optimization calculations obtained using dispersion-corrected density functional theory methods, suggesting that the carborane force field parameters should be suitable for more detailed calculations. We then performed molecular dynamics simulations for the 1,2-, 1,7-, and 1,12-dicarba- closo-dodecaborane(12) derivatives of indomethacin methyl ester bound with cyclooxygenase-2. The simulation results suggest that only the ortho-carborane derivative forms a stable complex, in agreement with experimental findings, and provide insight into the possible molecular basis for isomer binding selectivity.
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Affiliation(s)
- Menyhárt-Botond Sárosi
- Institute of Inorganic Chemistry, Faculty of Chemistry and Mineralogy , Leipzig University , Johannisallee 29 , D-04103 Leipzig , Germany
| | - Terry P Lybrand
- Departments of Chemistry and Pharmacology, Center for Structural Biology , Vanderbilt University , Nashville , Tennessee 37235-1822 , United States
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4
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5
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High pressure, a protocol to identify the weak dihydrogen bonds: experimental evidence of C–H···H–B interaction. Sci China Chem 2017. [DOI: 10.1007/s11426-017-9152-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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6
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Sárosi MB, Neumann W, Lybrand TP, Hey-Hawkins E. Molecular Modeling of the Interactions between Carborane-Containing Analogs of Indomethacin and Cyclooxygenase-2. J Chem Inf Model 2017. [DOI: 10.1021/acs.jcim.7b00113] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Menyhárt-Botond Sárosi
- Institute
of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Leipzig University, Johannisallee 29, D-04103 Leipzig, Germany
| | - Wilma Neumann
- Institute
of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Leipzig University, Johannisallee 29, D-04103 Leipzig, Germany
| | - Terry P. Lybrand
- Center
for Structural Biology, Departments of Chemistry and Pharmacology, Vanderbilt University, Nashville, Tennessee 37232-8725, United States
| | - Evamarie Hey-Hawkins
- Institute
of Inorganic Chemistry, Faculty of Chemistry and Mineralogy, Leipzig University, Johannisallee 29, D-04103 Leipzig, Germany
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7
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Ilie A, Crespo O, Gimeno MC, Holthausen MC, Laguna A, Diefenbach M, Silvestru C. (N,Se) and (Se,N,Se) Ligands Based on Carborane and Pyridine Fragments - Reactivity of 2,6-[(1′-Me-1′,2′-closo-C2B10H10)SeCH2]2C5H3N towards Copper and Silver. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700075] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Adriana Ilie
- Departamentul de Chimie; Centrul de Chimie Supramoleculară Organică şi Organometalică (CCSOOM); Facultatea de Chimie şi Inginerie Chimică; Universitatea Babeş-Bolyai; 400028 Cluj-Napoca Romania
| | - Olga Crespo
- Departamento de Química Inorgánica; Instituto de Síntesis Química y Catálisis Homogénea (ISQCH); Universidad de Zaragoza-CSIC; 50009 Zaragoza Spain
| | - M. Concepción Gimeno
- Departamento de Química Inorgánica; Instituto de Síntesis Química y Catálisis Homogénea (ISQCH); Universidad de Zaragoza-CSIC; 50009 Zaragoza Spain
| | - Max C. Holthausen
- Institut für Anorganische und Analytische Chemie; Goethe-Universität Frankfurt am Main; Max-von-Laue-Str. 7 60438 Frankfurt am Main Germany
| | - Antonio Laguna
- Departamento de Química Inorgánica; Instituto de Síntesis Química y Catálisis Homogénea (ISQCH); Universidad de Zaragoza-CSIC; 50009 Zaragoza Spain
| | - Martin Diefenbach
- Institut für Anorganische und Analytische Chemie; Goethe-Universität Frankfurt am Main; Max-von-Laue-Str. 7 60438 Frankfurt am Main Germany
| | - Cristian Silvestru
- Departamentul de Chimie; Centrul de Chimie Supramoleculară Organică şi Organometalică (CCSOOM); Facultatea de Chimie şi Inginerie Chimică; Universitatea Babeş-Bolyai; 400028 Cluj-Napoca Romania
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8
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Fanfrlík J, Pecina A, Řezáč J, Sedlak R, Hnyk D, Lepšík M, Hobza P. B–H⋯π: a nonclassical hydrogen bond or dispersion contact? Phys Chem Chem Phys 2017; 19:18194-18200. [DOI: 10.1039/c7cp02762a] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Quantum mechanical calculations disprove the attractive electrostatic nature of B–H⋯π motif and define it as dispersion-driven contact.
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Affiliation(s)
- Jindřich Fanfrlík
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
- 166 10 Prague 6
- Czech Republic
| | - Adam Pecina
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
- 166 10 Prague 6
- Czech Republic
| | - Jan Řezáč
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
- 166 10 Prague 6
- Czech Republic
| | - Robert Sedlak
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
- 166 10 Prague 6
- Czech Republic
| | - Drahomír Hnyk
- Institute of Inorganic Chemistry of the Czech Academy of Sciences
- v.v.i., 250 68 Husinec-Řež
- Czech Republic
| | - Martin Lepšík
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
- 166 10 Prague 6
- Czech Republic
| | - Pavel Hobza
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
- 166 10 Prague 6
- Czech Republic
- Regional Center of Advanced Technologies and Materials
- Department of Physical Chemistry
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9
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Bhattacharyya PK. B-Hb⋯π interactions in benzene–borazine sandwich and multidecker complexes: a DFT study. NEW J CHEM 2017. [DOI: 10.1039/c6nj03545k] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Multidecker complexes of benzene/borazine can be formed through B-Hb⋯π interactions.
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10
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Saha B, Bhattacharyya PK. B–Hb⋯π interaction in borane–graphene complexes: coronene as a case study. NEW J CHEM 2017. [DOI: 10.1039/c7nj00057j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
N/B/BN doping in graphene enhances adsorption of boranes.
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11
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Oliveira BG, Zabardasti A, Goudarziafshar H, Salehnassaj M. The electronic mechanism ruling the dihydrogen bonds and halogen bonds in weakly bound systems of H3SiH···HOX and H3SiH···XOH (X = F, Cl, and Br). J Mol Model 2015; 21:77. [PMID: 25754136 DOI: 10.1007/s00894-015-2616-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Accepted: 02/08/2015] [Indexed: 11/24/2022]
Affiliation(s)
- Boaz G Oliveira
- Instituto de Ciências Ambientais e Desenvolvimento Sustentável, Universidade Federal da Bahia, 47801-100, Barreiras, Brazil,
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12
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Shirkov L, Makarewicz J. Does DFT-SAPT method provide spectroscopic accuracy? J Chem Phys 2015; 142:064102. [DOI: 10.1063/1.4907204] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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13
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14
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Goszczyński TM, Kowalski K, Leśnikowski ZJ, Boratyński J. Solid state, thermal synthesis of site-specific protein-boron cluster conjugates and their physicochemical and biochemical properties. Biochim Biophys Acta Gen Subj 2014; 1850:411-8. [PMID: 25445715 DOI: 10.1016/j.bbagen.2014.11.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Revised: 11/07/2014] [Accepted: 11/14/2014] [Indexed: 12/25/2022]
Abstract
BACKGROUND Boron clusters represent a vast family of boron-rich compounds with extraordinary properties that provide the opportunity of exploitation in different areas of chemistry and biology. In addition, boron clusters are clinically used in boron neutron capture therapy (BNCT) of tumors. In this paper, a novel, in solid state (solvent free), thermal method for protein modification with boron clusters has been proposed. METHODS The method is based on a cyclic ether ring opening in oxonium adduct of cyclic ether and a boron cluster with nucleophilic centers of the protein. Lysozyme was used as the model protein, and the physicochemical and biological properties of the obtained conjugates were characterized. RESULTS The main residues of modification were identified as arginine-128 and threonine-51. No significant changes in the secondary or tertiary structures of the protein after tethering of the boron cluster were found using mass spectrometry and circular dichroism measurements. However, some changes in the intermolecular interactions and hydrodynamic and catalytic properties were observed. CONCLUSIONS To the best of our knowledge, we have described the first example of an application of cyclic ether ring opening in the oxonium adducts of a boron cluster for protein modification. In addition, a distinctive feature of the proposed approach is performing the reaction in solid state and at elevated temperature. GENERAL SIGNIFICANCE The proposed methodology provides a new route to protein modification with boron clusters and extends the range of innovative molecules available for biological and medical testing.
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Affiliation(s)
- Tomasz M Goszczyński
- "Neolek" Laboratory of Biomedical Chemistry, Department of Experimental Oncology, Institute of Immunology and Experimental Therapy, PAS, 12 Rudolf Weigl St., 53-114 Wrocław, Poland.
| | - Konrad Kowalski
- "Neolek" Laboratory of Biomedical Chemistry, Department of Experimental Oncology, Institute of Immunology and Experimental Therapy, PAS, 12 Rudolf Weigl St., 53-114 Wrocław, Poland
| | - Zbigniew J Leśnikowski
- Laboratory of Molecular Virology and Biological Chemistry, Institute of Medical Biology, PAS, 106 Lodowa St., 93-232 Łódź, Poland.
| | - Janusz Boratyński
- "Neolek" Laboratory of Biomedical Chemistry, Department of Experimental Oncology, Institute of Immunology and Experimental Therapy, PAS, 12 Rudolf Weigl St., 53-114 Wrocław, Poland
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15
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Deepa P, Sedlak R, Hobza P. On the origin of the substantial stabilisation of the electron-donor 1,3-dithiole-2-thione-4-carboxyclic acid···I2 and DABCO···I2 complexes. Phys Chem Chem Phys 2014; 16:6679-86. [PMID: 24584418 DOI: 10.1039/c4cp00055b] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The stabilisation energies of the crystal structures of 1,3-dithiole-2-thione-4-carboxyclic acid···I2 and DABCO···I2 complexes determined by the CCSD(T)/CBS method are very large and exceed 8 and 15 kcal mol(-1), respectively. The DFT-D method (B97-D3/def2-QZVP) strongly overestimates these stabilisation energies, which support the well-known fact that the DFT-D method is not very applicable to the study of charge-transfer complexes. On the other hand, the M06-2X/def2-QZVP method provides surprisingly reliable energies. A DFT-SAPT analysis has shown that a substantial stabilisation of these complexes arises from the charge-transfer energy included in the induction energy and that the respective induction energy is much larger than that of other non-covalently bound complexes. The total stabilisation energies of the complexes mentioned as well as of those where iodine has been replaced by lighter halogens (Br2 and Cl2) or by hetero systems (IF, ICH3, N2) correlate well with the magnitude of the σ-hole (Vs,max value) as well as with the LUMO energy. The nature of the stabilisation of all complexes between both electron donors and X2 (X = I, Br, Cl, N) systems is explained by the magnitude of the σ-hole but surprisingly also by the values of the electric quadrupole moment of these systems. Evidently, the nature of the stabilisation of halogen-bonded complexes between electron donors and systems where the first non-zero electric multipole moment is the quadrupole moment can be explained not only by the recently introduced concept of the σ-hole but also by the classical concept of electric quadrupole moments.
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Affiliation(s)
- Palanisamy Deepa
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic.
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16
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Douvris C, Michl J. Update 1 of:Chemistry of the Carba-closo-dodecaborate(−) Anion, CB11H12–. Chem Rev 2014; 113:PR179-233. [PMID: 23944158 DOI: 10.1021/cr400059k] [Citation(s) in RCA: 159] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christos Douvris
- Institute of Organic Chemistry and Biochemistry, Academy of Science of the Czech Republic, 16610 Prague, Czech Republic
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
| | - Josef Michl
- Institute of Organic Chemistry and Biochemistry, Academy of Science of the Czech Republic, 16610 Prague, Czech Republic
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
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17
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Pecina A, Lepšík M, Řezáč J, Brynda J, Mader P, Řezáčová P, Hobza P, Fanfrlík J. QM/MM Calculations Reveal the Different Nature of the Interaction of Two Carborane-Based Sulfamide Inhibitors of Human Carbonic Anhydrase II. J Phys Chem B 2013; 117:16096-104. [DOI: 10.1021/jp410216m] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Adam Pecina
- Institute
of Organic Chemistry and Biochemistry (IOCB), Academy of Sciences of the Czech Republic, v.v.i.,
Gilead Sciences and IOCB Research Center, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic
| | - Martin Lepšík
- Institute
of Organic Chemistry and Biochemistry (IOCB), Academy of Sciences of the Czech Republic, v.v.i.,
Gilead Sciences and IOCB Research Center, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic
| | - Jan Řezáč
- Institute
of Organic Chemistry and Biochemistry (IOCB), Academy of Sciences of the Czech Republic, v.v.i.,
Gilead Sciences and IOCB Research Center, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic
| | - Jiří Brynda
- Institute
of Organic Chemistry and Biochemistry (IOCB), Academy of Sciences of the Czech Republic, v.v.i.,
Gilead Sciences and IOCB Research Center, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic
- Institute
of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague 4, Czech Republic
| | - Pavel Mader
- Institute
of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague 4, Czech Republic
| | - Pavlína Řezáčová
- Institute
of Organic Chemistry and Biochemistry (IOCB), Academy of Sciences of the Czech Republic, v.v.i.,
Gilead Sciences and IOCB Research Center, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic
- Institute
of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague 4, Czech Republic
| | - Pavel Hobza
- Institute
of Organic Chemistry and Biochemistry (IOCB), Academy of Sciences of the Czech Republic, v.v.i.,
Gilead Sciences and IOCB Research Center, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic
- Regional
Center of Advanced Technologies and Materials, Department of Physical
Chemistry, Palacký University, Olomouc 771 46, Olomouc, Czech Republic
| | - Jindřich Fanfrlík
- Institute
of Organic Chemistry and Biochemistry (IOCB), Academy of Sciences of the Czech Republic, v.v.i.,
Gilead Sciences and IOCB Research Center, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic
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18
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The Semiempirical Quantum Mechanical Scoring Function for In Silico Drug Design. Chempluschem 2013; 78:921-931. [DOI: 10.1002/cplu.201300199] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Indexed: 12/19/2022]
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19
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Bankiewicz B, Matczak P, Palusiak M. Electron Density Characteristics in Bond Critical Point (QTAIM) versus Interaction Energy Components (SAPT): The Case of Charge-Assisted Hydrogen Bonding. J Phys Chem A 2011; 116:452-9. [DOI: 10.1021/jp210940b] [Citation(s) in RCA: 86] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Barbara Bankiewicz
- Department of Theoretical Chemistry, University of Białystok, Hurtowa 1, 15-399, Białystok, Poland
| | - Piotr Matczak
- Department of Theoretical and Structural Chemistry, University of Łódź, Tamka 12, 91-403 Łódź, Poland
| | - Marcin Palusiak
- Department of Theoretical and Structural Chemistry, University of Łódź, Tamka 12, 91-403 Łódź, Poland
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20
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Prakash M, Subramanian V. Structure, stability and spectral signatures of monoprotic carborane acid-water clusters (CBW(n), where n = 1-6). Phys Chem Chem Phys 2011; 13:21479-86. [PMID: 22052068 DOI: 10.1039/c1cp22532d] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The gas phase structure, stability, spectra, and proton transfer properties of monoprotic carborane acid-water clusters [CB(11)F(m)H(11-m)(OH(2))(1)]-(H(2)O)(n) (where m = 0, 5, and 10; n = 1-6) have been calculated using density functional theory (DFT) with the Becke's three-parameter hybrid exchange functional and Lee-Yang-Parr correlation functional (B3LYP) using 6-31+G* basis set. Results reveal that Eigen cation defects are found in CBW(n) (where n = 2-6) clusters and these clusters are significantly more stable than the non-Eigen geometry. In addition to the conventional hydrogen bond (H-bond) the role of dihydrogen bond (DHB) and halogen bond (XB) in the stabilization of these clusters can be observed from the molecular graphs derived from the atoms in molecules (AIM) analysis. Spectral information shows the features of Eigen cation and proton oscillation involved in the proton transfer process. The dissociation of proton from the perfluoro derivatives with two water molecules is more favorable when compared to the other derivatives.
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Affiliation(s)
- Muthuramalingam Prakash
- Chemical Laboratory, Council of Scientific and Industrial Research-Central Leather Research Institute, Adyar, Chennai 600 020, India
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21
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Lee TB, McKee ML. Dissolution Thermochemistry of Alkali Metal Dianion Salts (M2X1, M = Li+, Na+, and K+ with X = CO32–, SO42–, C8H82–, and B12H122–). Inorg Chem 2011; 50:11412-22. [DOI: 10.1021/ic201176s] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tae Bum Lee
- Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama 36849, United States
| | - Michael L. McKee
- Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama 36849, United States
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Řezáč J, Hobza P. Extrapolation and Scaling of the DFT-SAPT Interaction Energies toward the Basis Set Limit. J Chem Theory Comput 2011; 7:685-9. [DOI: 10.1021/ct200005p] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Jan Řezáč
- Department of Physical Chemistry, Palacky University, 771 46 Olomouc, Czech Republic
| | - Pavel Hobza
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, 166 10 Prague, Czech Republic
- Department of Physical Chemistry, Palacky University, 771 46 Olomouc, Czech Republic
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23
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Di Salvo F, Camargo B, García Y, Teixidor F, Viñas C, Planas JG, Light ME, Hursthouse MB. Supramolecular architectures in o-carboranyl alcohols bearing N-aromatic rings: syntheses, crystal structures and melting points correlation. CrystEngComm 2011. [DOI: 10.1039/c1ce05449j] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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