1
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Bhatt H, Verma AK, Modak P. Polyether phases of formic acid revealed under high pressure. Chem Commun (Camb) 2023; 59:9888-9891. [PMID: 37493352 DOI: 10.1039/d3cc02129g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2023]
Abstract
Evolutionary structure searches reveal that at 20 GPa, formic acid (FA) transforms to an orthorhombic ether-chain polymer phase, ruling out hydrogen bond symmetrization, followed by a novel crowned cyclic-ether tetragonal phase above 60 GPa. Emergence of characteristic polyether and new OH stretching modes in infrared experiments validate the findings. Resemblance of polymer chain with a cosmopolymer polyoxymethylene, shows an engrossing multifaceted evolution of FA.
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Affiliation(s)
- Himal Bhatt
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India.
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - Ashok K Verma
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India.
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - P Modak
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India.
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
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2
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Han Y, Wang Z, Qiao R, Cheng J, Jiang C, Wang H. Study on depolymerization kinetics of formic acid dimers in binary mixture. Phys Chem Chem Phys 2023. [PMID: 37378660 DOI: 10.1039/d3cp01876h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2023]
Abstract
In this study, polarization Raman spectra were collected for binary mixtures of formic acid/methanol and formic acid/acetonitrile with different volume fractions. The broad band of formic acid in the CO vibration region was divided into four vibration peaks, corresponding to CO symmetric and anti-symmetric stretching vibration from cyclic dimer, CO stretching from open dimer, and CO stretching from the free monomer. The experiments showed that as the volume fraction of formic acid in the binary mixture decreased, the cyclic dimer gradually converted to the open dimer, and at a volume fraction of 0.1, fully depolymerized into monomer form (free monomer, solvated monomer, and hydrogen bonding monomer clusters with solvent). The contribution percentage of the total CO stretching intensity of each structure at different concentrations was quantitatively calculated using high resolution infrared spectroscopy, and the results were consistent with the conclusions predicted by polarization Raman spectroscopy. Concentration-triggered 2D-COS synchronous and asynchronous spectra also confirmed the kinetics of formic acid diluted in acetonitrile. This work provides a spectroscopic method for studying the structure of organic compounds in solution and concentration-triggering kinetics in mixtures.
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Affiliation(s)
- Yufei Han
- Hangzhou Institute of Advanced Studies, College of chemistry and life sciences, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231, Zhejiang, P. R. China.
- Department of Chemistry, College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, China.
| | - Zian Wang
- Department of Chemistry, College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, China.
| | - Ru Qiao
- Hangzhou Institute of Advanced Studies, College of chemistry and life sciences, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231, Zhejiang, P. R. China.
| | - Jianwen Cheng
- Hangzhou Institute of Advanced Studies, College of chemistry and life sciences, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231, Zhejiang, P. R. China.
| | - Caiying Jiang
- Department of Chemistry, College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, China.
| | - Huigang Wang
- Hangzhou Institute of Advanced Studies, College of chemistry and life sciences, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231, Zhejiang, P. R. China.
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3
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Jóźwiak K, Jezierska A, Panek JJ, Goremychkin EA, Tolstoy PM, Shenderovich IG, Filarowski A. Inter- vs. Intramolecular Hydrogen Bond Patterns and Proton Dynamics in Nitrophthalic Acid Associates. Molecules 2020; 25:E4720. [PMID: 33066679 PMCID: PMC7587347 DOI: 10.3390/molecules25204720] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Revised: 10/07/2020] [Accepted: 10/12/2020] [Indexed: 01/18/2023] Open
Abstract
Noncovalent interactions are among the main tools of molecular engineering. Rational molecular design requires knowledge about a result of interplay between given structural moieties within a given phase state. We herein report a study of intra- and intermolecular interactions of 3-nitrophthalic and 4-nitrophthalic acids in the gas, liquid, and solid phases. A combination of the Infrared, Raman, Nuclear Magnetic Resonance, and Incoherent Inelastic Neutron Scattering spectroscopies and the Car-Parrinello Molecular Dynamics and Density Functional Theory calculations was used. This integrated approach made it possible to assess the balance of repulsive and attractive intramolecular interactions between adjacent carboxyl groups as well as to study the dependence of this balance on steric confinement and the effect of this balance on intermolecular interactions of the carboxyl groups.
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Affiliation(s)
- Kinga Jóźwiak
- Faculty of Chemistry, University of Wrocław 14 F. Joliot-Curie str., 50-383 Wrocław, Poland; (K.J.); (A.J.); (J.J.P.)
| | - Aneta Jezierska
- Faculty of Chemistry, University of Wrocław 14 F. Joliot-Curie str., 50-383 Wrocław, Poland; (K.J.); (A.J.); (J.J.P.)
| | - Jarosław J. Panek
- Faculty of Chemistry, University of Wrocław 14 F. Joliot-Curie str., 50-383 Wrocław, Poland; (K.J.); (A.J.); (J.J.P.)
| | - Eugene A. Goremychkin
- Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research 6 F. Joliot-Curie str., 141980 Dubna, Russia;
| | - Peter M. Tolstoy
- Institute of Chemistry, St. Petersburg State University, Universitetskij pr. 26, 198504 St. Petersburg, Russia;
| | - Ilya G. Shenderovich
- Institute of Organic Chemistry, University of Regensburg, Universitaetstrasse 31, 93053 Regensburg, Germany
| | - Aleksander Filarowski
- Faculty of Chemistry, University of Wrocław 14 F. Joliot-Curie str., 50-383 Wrocław, Poland; (K.J.); (A.J.); (J.J.P.)
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4
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Meyer KAE, Davies JA, Ellis AM. Shifting formic acid dimers into perspective: vibrational scrutiny in helium nanodroplets. Phys Chem Chem Phys 2020; 22:9637-9646. [DOI: 10.1039/d0cp01060j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
A metastable dimer of formic acid has been prepared inside superfluid helium nanodroplets and examined using IR spectroscopy and quantum chemical calculations.
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Affiliation(s)
- Katharina A. E. Meyer
- Institut für Physikalische Chemie
- Georg-August-Universität Göttingen
- 37077 Göttingen
- Germany
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5
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Abstract
AbstractFormic acid dimer as the prototypical doubly hydrogen-bonded gas-phase species is discussed from the perspective of the three translational and the three rotational degrees of freedom which are lost when two formic acid molecules form a stable complex. The experimental characterisation of these strongly hindered translations and rotations is reviewed, as are attempts to describe the associated fundamental vibrations, their combinations, and their thermal shifts by different electronic structure calculations and vibrational models. A remarkable match is confirmed for the combination of a CCSD(T)-level harmonic treatment and an MP2-level anharmonic VPT2 correction. Qualitatively correct thermal shifts of the vibrational spectra can be obtained from classical molecular dynamics in CCSD(T)-quality force fields. A detailed analysis suggests that this agreement between experiment and composite theoretical treatment is not strongly affected by fortuitous error cancellation but fully converged variational treatments of the six pair or intermolecular modes and their overtones and combinations in this model system would be welcome.
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6
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Malaganvi SS, Tonannavar (Yenagi) J, Tonannavar J. Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid. Heliyon 2019; 5:e01586. [PMID: 31193235 PMCID: PMC6522660 DOI: 10.1016/j.heliyon.2019.e01586] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 03/28/2019] [Accepted: 04/24/2019] [Indexed: 12/12/2022] Open
Abstract
The composite vibrational structure near 3650–3200 and 3000–2400 cm−1 in the observed IR absorption spectrum of Chelidonic acid has been explained in terms of intra- and inter-molecular −O−H∙∙∙O H-bonding attributed to monomer and dimer species computed at B3LYP/6–311++G(d,p) level. Three of the six dimer species derived out of ten monomeric components have shown both intra- and inter-molecular H-bonding. Vibrational modes of the monomer and dimer species are satisfactorily identified with the observed IR and Raman bands including frequency shifts associated with the H-bondings. The H-bond interactions in the monomer and dimer species have been characterized in terms of electron density, ρ(r), its Laplacian, ∇2ρ(r) and potential energy density at the O∙∙∙H bond critical points (BCPs) based on the Atoms in Molecules (AIM) theory. The attractive (van der Waals, H-bonds) and repulsive steric clash (SC) interactions are explained using computed reduced density gradient values from the noncovalent interaction (NCI) method. The AIM analysis confirms the presence of the intra- and inter-molecular H-bondings in the monomer/dimer species. The natural bond orbital (NBO) analysis of the natural charges and stabilization energy of the H-bonds for the dimer species further points to the stronger inter-than intra-molecular H-bonding.
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7
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Affiliation(s)
- Susy Lopes
- CQC, Department of Chemistry, University of Coimbra Coimbra, Portugal
| | - Rui Fausto
- CQC, Department of Chemistry, University of Coimbra Coimbra, Portugal
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8
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Ab initio molecular dynamics study of overtone excitations in formic acid and its water complex. Theor Chem Acc 2018. [DOI: 10.1007/s00214-018-2280-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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9
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Lopes S, Fausto R, Khriachtchev L. Formic acid dimers in a nitrogen matrix. J Chem Phys 2018; 148:034301. [PMID: 29352788 DOI: 10.1063/1.5010417] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Formic acid (HCOOH) dimers are studied by infrared spectroscopy in a nitrogen matrix and by ab initio calculations. We benefit from the use of a nitrogen matrix where the lifetime of the higher-energy (cis) conformer is very long (∼11 h vs. 7 min in an argon matrix). As a result, in a nitrogen matrix, a large proportion of the cis conformer can be produced by vibrational excitation of the lower-energy (trans) conformer. Three trans-trans, four trans-cis, and three cis-cis dimers are found in the experiments. The spectroscopic information on most of these dimers is enriched compared to the previous studies in an argon matrix. The cis-cis dimers of ordinary formic acid (without deuteration) are reported here for the first time. Several conformational processes are obtained using selective excitation by infrared light, some of them also for the first time. In particular, we report on the formation of cis-cis dimers upon vibrational excitation of trans-cis dimers. Tunneling decays of several dimers have been detected in the dark. The tunneling decay of cis-cis dimers of formic acid as well as the stabilization of cis units in cis-cis dimers is also observed for the first time.
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Affiliation(s)
- Susy Lopes
- Department of Chemistry, University of Coimbra, Rua Larga, P-3004-535 Coimbra, Portugal
| | - Rui Fausto
- Department of Chemistry, University of Coimbra, Rua Larga, P-3004-535 Coimbra, Portugal
| | - Leonid Khriachtchev
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
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10
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In Oh M, Paliy M, Consta S. “Star” morphologies of charged nanodrops comprised of conformational isomers. J Chem Phys 2018; 148:024307. [DOI: 10.1063/1.5011989] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Affiliation(s)
- Myong In Oh
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
| | - Maxim Paliy
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
| | - Styliani Consta
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
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11
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Duarte L, Rekola I, Khriachtchev L. Complex between Formic Acid and Nitrous Oxide: A Matrix-Isolation and Computational Study. J Phys Chem A 2017; 121:8728-8737. [DOI: 10.1021/acs.jpca.7b09586] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Luís Duarte
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
| | - Iiris Rekola
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
| | - Leonid Khriachtchev
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
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12
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Farfán P, Echeverri A, Diaz E, Tapia JD, Gómez S, Restrepo A. Dimers of formic acid: Structures, stability, and double proton transfer. J Chem Phys 2017; 147:044312. [DOI: 10.1063/1.4985880] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Affiliation(s)
- Paola Farfán
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52–21, Medellín, Colombia
| | - Andrea Echeverri
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52–21, Medellín, Colombia
| | - Estefanía Diaz
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52–21, Medellín, Colombia
| | - Juan David Tapia
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52–21, Medellín, Colombia
| | - Sara Gómez
- Departamento de Educación y Ciencias Básicas, Instituto Tecnológico Metropolitano, Calle 73 No. 76A–354, Medellín, Colombia
| | - Albeiro Restrepo
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52–21, Medellín, Colombia
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13
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Experimental and theoretical IR study of methyl thioglycolate, CH 3 OC(O)CH 2 SH, in different phases: Evidence of a dimer formation. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.03.031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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14
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Sapunov VN, Voronov MS, Gustyakova SI, Kozeeva IS, Makarova EM. Specific process features of epoxidation of fatty acid methyl esters of vegetable oils with performic acid generated in situ. RUSS J APPL CHEM+ 2017. [DOI: 10.1134/s1070427217010098] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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15
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Krzystyniak M, Drużbicki K, Romanelli G, Gutmann MJ, Rudić S, Imberti S, Fernandez-Alonso F. Nuclear dynamics and phase polymorphism in solid formic acid. Phys Chem Chem Phys 2017; 19:9064-9074. [PMID: 28304035 DOI: 10.1039/c7cp00997f] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We apply a unique sequence of structural and dynamical neutron-scattering techniques, augmented with density-functional electronic-structure calculations, to establish the degree of polymorphism in an archetypal hydrogen-bonded system - crystalline formic acid. Using this combination of experimental and theoretical techniques, the hypothesis by Zelsmann on the coexistence of the β1 and β2 phases above 220 K is tested. Contrary to the postulated scenario of proton-transfer-driven phase coexistence, the emerging picture is one of a quantitatively different structural change over this temperature range, whereby the loosening of crystal packing promotes temperature-induced shearing of the hydrogen-bonded chains. The presented work, therefore, solves a fifty-year-old puzzle and provides a suitable framework for the use neutron-Compton-scattering techniques in the exploration of phase polymorphism in condensed matter.
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Affiliation(s)
- Maciej Krzystyniak
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, UK. and School of Science and Technology, Nottingham Trent University, Clifton Campus, Nottingham, NG11 8NS, UK
| | - Kacper Drużbicki
- Faculty of Physics, Adam Mickiewicz University, Umultowska St. 85, 61-614 Poznan, Poland
| | - Giovanni Romanelli
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, UK.
| | - Matthias J Gutmann
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, UK.
| | - Svemir Rudić
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, UK.
| | - Silvia Imberti
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, UK.
| | - Felix Fernandez-Alonso
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, UK. and Department of Physics and Astronomy, University College London, Gower Street, London, WC1E 6BT, UK
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16
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Arruda MS, Medina A, Sousa JN, Mendes LAV, Marinho RRT, Prudente FV. Ionization and Fragmentation of DCOOD Induced by Synchrotron Radiation at the Oxygen 1s Edge: The Role of Dimer Formation. J Phys Chem A 2016; 120:5325-36. [DOI: 10.1021/acs.jpca.6b01714] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Manuela S. Arruda
- Instituto
de Física, Universidade Federal da Bahia, 40170-115 Salvador, BA, Brazil
- Centro
de Ciências Exatas e Tecnológicas, Universidade Federal do Recôncavo da Bahia, 44380-000 Cruz das Almas, BA, Brazil
| | - Aline Medina
- Instituto
de Física, Universidade Federal da Bahia, 40170-115 Salvador, BA, Brazil
| | - Josenilton N. Sousa
- Instituto
de Física, Universidade Federal da Bahia, 40170-115 Salvador, BA, Brazil
| | - Luiz A. V. Mendes
- Instituto
de Física, Universidade Federal da Bahia, 40170-115 Salvador, BA, Brazil
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17
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Lopes S, Domanskaya AV, Räsänen M, Khriachtchev L, Fausto R. Acetic acid dimers in a nitrogen matrix: Observation of structures containing the higher-energy conformer. J Chem Phys 2015; 143:104307. [DOI: 10.1063/1.4929575] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Susy Lopes
- Department of Chemistry, University of Coimbra, Rua Larga, P-3004-535 Coimbra, Portugal
| | - Alexandra V. Domanskaya
- Institute of Physical Chemistry, Georg-August University, Tammannstr 6, D-37077 Göttingen, Germany
| | - Markku Räsänen
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
| | - Leonid Khriachtchev
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
| | - Rui Fausto
- Department of Chemistry, University of Coimbra, Rua Larga, P-3004-535 Coimbra, Portugal
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19
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Crespo-Otero R, Mardykov A, Sanchez-Garcia E, Sander W, Barbatti M. Photo-stability of peptide-bond aggregates: N-methylformamide dimers. Phys Chem Chem Phys 2015; 16:18877-87. [PMID: 25081138 DOI: 10.1039/c4cp02518k] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The formation of weakly-bound dimers of N-methylformamide (NMF) and the photochemistry of these dimers after irradiation at 248 nm were explored using matrix-isolation spectroscopy. Calculations were used to characterize the diverse isomers and assign their IR spectra; non-adiabatic dynamics was simulated to understand their photo-deactivation mechanism. The most stable dimers, and , were obtained by trans-trans aggregation (N-HO[double bond, length as m-dash]C interactions) and could be identified in the matrix. The main products formed after irradiation are the trans-cis dimers ( and ), also stabilized by N-HO[double bond, length as m-dash]C interactions. In contrast to the photochemistry of the monomers, no dissociative products were observed after 248 nm irradiation of the dimers. The absence of dissociative products can be explained by a proton-transfer mechanism in the excited state that is faster than the photo-dissociative mechanism. The fact that hydrogen bonding has such a significant effect on the photochemical stability of NMF has important implications to understand the stability of peptide-bonded systems to UV irradiation.
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Affiliation(s)
- Rachel Crespo-Otero
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilheim-Platz 1, 45470 Mülheim an der Ruhr, Germany.
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20
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Khriachtchev L. Matrix-isolation studies of noncovalent interactions: more sophisticated approaches. J Phys Chem A 2015; 119:2735-46. [PMID: 25679775 DOI: 10.1021/jp512005h] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Noncovalent interactions are crucial for many physical, chemical, and biological phenomena. Matrix isolation is a powerful method to study noncovalent interactions, including hydrogen-bonded species, and it has been extensively used in this field. However, there are difficult situations, such as in the case of species that are impossible to prepare in the gas phase. In this article, we describe some advanced approaches allowing studies of complexes that are problematic for the traditional methods. Photolysis of a suitable precursor in a matrix can lead to a large concentration of 1:1 complexes, which are otherwise very difficult to prepare (e.g., the H2O···O complex). Photolysis of species combined with annealing can lead to complexes of molecules with mobile atoms (e.g., the same H2O···O complex). Simultaneous photolysis of two species combined with annealing can produce complexes of radicals via reactions of the photogenerated complexes with mobile atoms (e.g., the H2O···HCO complex). Interaction of noble-gas (Ng) hydrides with other species is another topic (e.g., the N2···HArF complex) and very large blue shifts of the H-Ng stretching modes are normally observed for these systems. Complexes and dimers of the higher-energy conformer of formic acid have been prepared by using selective vibrational excitation of the ground-state conformer. The higher-energy conformer of formic acid can be efficiently stabilized in the complexes with strong hydrogen bonding. We also consider some problematic cases when the changes in the vibrational frequencies of the 1:1 complexes are very small (e.g., the phenol···Xe complex) and when the complex formation is prevented by strong solvation in the matrix (e.g., species in solid xenon).
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Affiliation(s)
- Leonid Khriachtchev
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
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21
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Ryazantsev SV, Feldman VI. Radiation-induced transformations of matrix-isolated formic acid: evidence for the HCOOH → HOCO + H channel. Phys Chem Chem Phys 2015; 17:30648-58. [DOI: 10.1039/c5cp05446j] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
HOCO radicals are produced under X-ray irradiation of isolated formic acid at low temperatures, and possible mechanisms and astrochemical implications are discussed.
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22
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Morais SFDA, Mundim KC, Ferreira DAC. An alternative interpretation of the ultracold methylhydroxycarbene rearrangement mechanism: cooperative effects. Phys Chem Chem Phys 2015; 17:7443-8. [DOI: 10.1039/c4cp05842a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent studies have reported surprising results related to the rearrangement of carbenes under ultracold conditions, through quantum tunnelling. Here, we demonstrate that a rearrangement of methylhydroxycarbene is possible through cooperative effects.
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Affiliation(s)
- Sara F. de A. Morais
- Laboratório de Modelagem de Sistemas Complexos
- Universidade de Brasília
- Instituto de Química (IQ-UnB)
- Campus Universitário Darcy Ribeiro
- Asa Norte - Brasília-DF
| | - Kleber C. Mundim
- Laboratório de Modelagem de Sistemas Complexos
- Universidade de Brasília
- Instituto de Química (IQ-UnB)
- Campus Universitário Darcy Ribeiro
- Asa Norte - Brasília-DF
| | - Daví A. C. Ferreira
- Laboratório de Modelagem de Sistemas Complexos
- Universidade de Brasília
- Instituto de Química (IQ-UnB)
- Campus Universitário Darcy Ribeiro
- Asa Norte - Brasília-DF
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23
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Gerbig D, Schreiner PR. Hydrogen-Tunneling in Biologically Relevant Small Molecules: The Rotamerizations of α-Ketocarboxylic Acids. J Phys Chem B 2014; 119:693-703. [DOI: 10.1021/jp503633m] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Dennis Gerbig
- Institute of Organic Chemistry, Justus-Liebig-University, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
| | - Peter R. Schreiner
- Institute of Organic Chemistry, Justus-Liebig-University, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
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Adsorption behaviors of monomer and dimer of formic acid on Pt (111) in the absence and presence of water. J Mol Model 2014; 20:2264. [DOI: 10.1007/s00894-014-2264-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2014] [Accepted: 04/23/2014] [Indexed: 10/25/2022]
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Kalescky R, Kraka E, Cremer D. Accurate determination of the binding energy of the formic acid dimer: The importance of geometry relaxation. J Chem Phys 2014; 140:084315. [DOI: 10.1063/1.4866696] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Cao Q, Berski S, Latajka Z, Räsänen M, Khriachtchev L. Reaction of atomic hydrogen with formic acid. Phys Chem Chem Phys 2014; 16:5993-6001. [DOI: 10.1039/c3cp55265a] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Zins EL, Krim L. Photochemistry of a 1 : 1 hydrogen-bonded CH3CN : HCOOH complex under astrochemically-relevant conditions. Phys Chem Chem Phys 2014; 16:3388-98. [DOI: 10.1039/c3cp54041c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Manner VW, Chellappa RS, Sheffield SA, Liu Z, Dattelbaum DM. High-pressure far-infrared spectroscopic studies of hydrogen bonding in formic acid. APPLIED SPECTROSCOPY 2013; 67:1080-1086. [PMID: 24067640 DOI: 10.1366/13-07040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Simple molecules such as HCOOH, or formic acid, are suggested to have played important roles in planetary physics due to their possibility for high pressure and temperature chemistry under impact conditions. In this study, we have investigated the effect of pressure (up to 50 GPa) on H-bonding and reactivity of formic acid using synchrotron far infrared spectroscopy. Based on the pressure-induced changes to H-bond ν(O-H···O) stretching and γ(O-H···O) deformations, we observe significant reorganization of H-bonding network beginning at ~20 GPa. This is in good agreement with reports of symmetrization of H-bonds reported at 16-21 GPa from X-ray diffraction and Raman spectroscopy studies as well as molecular dynamics simulations. With further increase in pressure, beyond 35 GPa, formic acid undergoes a polymerization process that is complete beyond 45 GPa. Remarkably, upon decompression, the polymeric phase reverts to the crystalline high-pressure phase at 8 GPa.
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Kalescky R, Kraka E, Cremer D. Local vibrational modes of the formic acid dimer – the strength of the double hydrogen bond. Mol Phys 2013. [DOI: 10.1080/00268976.2013.796070] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- R. Kalescky
- a Department of Chemistry , Southern Methodist University , 3215 Daniel Avenue, Dallas , Texas , 75275 , USA
| | - E. Kraka
- a Department of Chemistry , Southern Methodist University , 3215 Daniel Avenue, Dallas , Texas , 75275 , USA
| | - D. Cremer
- a Department of Chemistry , Southern Methodist University , 3215 Daniel Avenue, Dallas , Texas , 75275 , USA
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Cato, Jr. MA, Majumdar D, Roszak S, Leszczynski J. Exploring Relative Thermodynamic Stabilities of Formic Acid and Formamide Dimers – Role of Low-Frequency Hydrogen-Bond Vibrations. J Chem Theory Comput 2013; 9:1016-26. [DOI: 10.1021/ct300889b] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael A. Cato, Jr.
- Interdisciplinary Center for Nanotoxicity, Jackson State University, Jackson, Mississippi 39217, United States
| | - D. Majumdar
- Interdisciplinary Center for Nanotoxicity, Jackson State University, Jackson, Mississippi 39217, United States
| | - Szczepan Roszak
- Institute of Physical and Theoretical
Chemistry, Wroclaw University of Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Jerzy Leszczynski
- Interdisciplinary Center for Nanotoxicity, Jackson State University, Jackson, Mississippi 39217, United States
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Cao Q, Melavuori M, Lundell J, Räsänen M, Khriachtchev L. Matrix-isolation and ab initio study of the complex between formic acid and xenon. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.05.027] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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32
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Tsuge M, Marushkevich K, Räsänen M, Khriachtchev L. Infrared Characterization of the HCOOH···CO2 Complexes in Solid Argon: Stabilization of the Higher-Energy Conformer of Formic Acid. J Phys Chem A 2012; 116:5305-11. [DOI: 10.1021/jp302911p] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Masashi Tsuge
- Department
of Chemistry, University of Helsinki, P.O. Box 55, FIN-00014, Finland
| | - Kseniya Marushkevich
- Department
of Chemistry, University of Helsinki, P.O. Box 55, FIN-00014, Finland
| | - Markku Räsänen
- Department
of Chemistry, University of Helsinki, P.O. Box 55, FIN-00014, Finland
| | - Leonid Khriachtchev
- Department
of Chemistry, University of Helsinki, P.O. Box 55, FIN-00014, Finland
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