Molar absorption coefficient of pyrene aggregates in water

Association between N-Terminal Pyrenes Stabilizes the Collagen Triple Helix

Collagen model peptides featuring the fluorophore pyrene at their N-termini have been synthesized, and their thermal denaturation has been examined using circular dichroism (CD) and fluorescence spectroscopies. Flanking the (Pro-Hyp-Gly)7 core of the peptide monomers at positions 1 and/or 23 in the primary sequence, Lys residues were introduced to ensure water solubility. Triple helices derived from such peptides show a broad excimer emission at ∼480 nm, indicative of interaction between the pyrene units. CD experiments show that the fluorophores enhance helix stability primarily through entropic effects. Unfolding temperatures (Tm) increase by up to 7 °C for systems with N-terminal lysine residues and by up to 21 °C for systems in which the first-position Lys is replaced by Ala. Tm values derived from fluorescence measurements (at 50 μM) typically lie within ∼1 °C of those obtained using CD (at 200 μM). Computational modeling in a water continuum using B3LYP-GD3 and M06-2X functionals predicts that face-to-face association of fluorophores can occur while H-bonding within the [(POG)n]3 assembly is retained. Such parallel stacking is consistent with hydrophobically driven stabilization. Labeling collagen peptides with pyrene is a synthetically simple way to promote triple helicity while providing a means to obtain Tm data on relatively dilute samples.

Self-Assembly and Photochemistry of a Pyrene-Methyl Viologen Supramolecular Fiber System

This paper reports the self-assembly of a donor-acceptor system into nanoscopic structures and the photo processes taking place within these structures. The donor employed is pyrene linked to two β-cyclodextrin molecules (CD-PY-CD), and adamantane-linked methyl viologen attached to the three arms of mesitylene (Ms-(MV²⁺-AD)₃) is the acceptor. CD-PY-CD and Ms-(MV²⁺-AD)₃ when dissolved in water self-assembled into vesicles, which joined together to give long fibers. The self-assembly was studied using spectroscopic and microscopic techniques. Fluorescence of the pyrene chromophore was quenched within the self-assembled system due to efficient photoinduced electron transfer to methyl viologen. Photoinduced electron transfer within the assembly is confirmed through identification of product radical ions in flash photolysis experiments. Steady-state irradiation of the self-assembled system in an optical bench led to the formation of methyl viologen radical cation, which was stable for a few hours. Longevity of the radical cation was attributed to the fast reaction of pyrene radical cation with adjacent pyrene to give an unstable adduct, which slows down the back electron transfer process.

Photoinduced Electron Transfer in a Self-Assembled Bis(β-cyclodextrin)-Linked Pyrene/Bis(adamantane)-Linked Methyl Viologen Donor-Acceptor System in Aqueous Solution

Pyrene linked to two β-CD (CD = cyclodextrin; PY = pyrene) molecules (CD-PY-CD) and methylviologen (MV²⁺) linked to two adamantane (AD) groups (AD-MV²⁺-AD) self-assembled in water to give toroidal nanostructures. Photoprocesses taking place in the femtosecond and nanosecond time ranges within the assembly are reported. Fluorescence of the pyrene chromophore was quenched in the toroid, suggesting very efficient electron transfer. Fast quenching of the pyrene fluorescence with a time constant of 6.85 ns was attributed to photoinduced electron transfer from pyrene to methyl viologen within the toroid assembly. Electron transfer leads to the formation of radical ion products, PY^•+ and MV^•+, which were identified in the nanosecond transient absorption spectra. Because of the close packing of chromophores, the radical ions undergo fast reactions with chromophores or similar ions in adjacent stacks to give dimeric products. Since the dimeric species are not very stable, the reactions are reversed at longer time scales to generate the radical ions, which then undergo back electron transfer and regenerate the starting materials.

Dinuclear copper(II) complexes with derivative triazine ligands as biomimetic models for catechol oxidases and nucleases

The research reported herein focuses on the synthesis of two new Cu(II) complexes {[Cu₂(2-X-4,6-bis(di-2-picolylamino)-1,3,5-triazine], with X = butane-1,4-diamine (2) or N-methylpyrenylbutane-1,4-diamine (3)}, the latter with a pyrene group as a possible DNA intercalating agent. The structure of complex (3) was determined by X-ray crystallography and shows the dinuclear {Cu^II(μ-OCH₃)₂Cu^II} unit in which the Cu^II···Cu^II distance of 3.040 Å is similar to that of 2.97 Å previously found for 1, which contains a {Cu^II(μ-OH)₂Cu^II} structural unit. Complexes (2) and (3) were also characterized in spectroscopic and electrochemical studies, and catecholase-like activity were performed for both complexes. The kinetic parameters obtained for the oxidation of the model substrate 3,5-di-tert-butylcatechol revealed that the insertion of the spacer butane-1,4-diamine and the pyrene group strongly contributes to increasing the catalytic efficiency of these systems. In fact, K_ass becomes significantly higher, indicating that these groups influence the interaction between the complex and the substrate. These complexes also show DNA cleavage under mild conditions with moderate reaction times. The rate of cleavage (k_cat) indicated that the presence of butane-1,4-diamine and pyrene increased the activity of both complexes. The reaction mechanism seems to have oxidative and hydrolytic features and the effect of DNA groove binding compounds and circular dichroism indicate that all complexes interact with plasmid DNA through the minor groove. High-resolution DNA cleavage assays provide information on the interaction mechanism and for complex (2) a specificity for the unpaired hairpin region containing thymine bases was observed, in contrast to (3).

Unusual Fluorescence Behavior of Pyrene-Amine Containing Dendrimers

A new class of pyrene-based dendrimers, characterized by the presence of a 1,4,7,10-Tetraazacyclododecane (cyclen) unit as the core, was studied by SSF (steady-state fluorescence) and SPC (single-photon counting fluorescence). The photophysical behavior of these dendrimers was studied in THF, DMF and DMSO solution. The typical signals for pyrene-labeled molecules were recorded in each solvent, showing the representative fluorescence spectra: the corresponding emissions of monomer and excimer of the pyrene chromophore are observed. Unexpectedly, the typical quenching of tertiary amine on the pyrene emission was not observed in these dendrimers. Quenching studies were performed by adding up to 3 equivalents of trifluoroacetic acid (TFA). To our knowledge, this is the first report of pyrene's unquenching behavior by a tertiary amine.

Unorthodox Combination of Cation-π and Charge-Transfer Interactions within a Donor-Acceptor Pair

Cation-π and charge-transfer (CT) interactions are ubiquitous in nature and involved in several biological processes. Although the origin of both the interactions in isolated pairs has extensively been studied, CT interactions are more prominent in supramolecular chemistry. Involvement of cation-π interactions in the preparation of advanced functional soft materials is uncommon. Moreover, a combination of these two interactions within a pair of electron donor (D) and acceptor (A) is uncharted. Here, we present a rational design to incorporate a combination of these two interactions within a D-A pair. A pyrene-peptide conjugate exhibits a combination of cation-π and CT interactions with a cationic naphthalenediimide (NDI) molecule in water. Nuclear Overhauser effect spectroscopy NMR along with other techniques and density functional theory calculations reveal the involvement of these interactions. The π-planes of pyrene and NDI adopt an angle of 56° to satisfy both the interactions, whereas β-sheet formation by the peptide sequence facilitates self-assembly. Notably, the binary system forms a self-supporting hydrogel at a higher concentration. The hydrogel shows efficient self-healing and injectable property. The hydrogel retains its thixotropic nature even at an elevated temperature. Broadly, we demonstrate a pathway that should prove pertinent to various areas, ranging from understanding biological assembly to peptide-based functional soft materials.

Exploring aggregation-induced emission through tuning of ligand structure for picomolar detection of pyrene

Tuning of ligand structures through controlled variation of ring number in fused-ring aromatic moiety appended to antipyrine allows detection of 7.8 × 10^-12  M pyrene via aggregation-induced emission (AIE) associated with 101-fold fluorescence enhancement. In one case, antipyrine unit is replaced by pyridine to derive bis-methylanthracenyl picolyl amine. The structures of four molecules have been confirmed by single crystal X-ray diffraction analysis. Among them, pyrene-antipyrine conjugate (L) undergoes pyrene triggered inhibition of photo-induced electron transfer (PET) leading to water-assisted AIE.

Design of Bivalent Nucleic Acid Ligands for Recognition of RNA-Repeated Expansion Associated with Huntington's Disease

We report the development of a new class of nucleic acid ligands that is comprised of Janus bases and the MPγPNA backbone and is capable of binding rCAG repeats in a sequence-specific and selective manner via, inference, bivalent H-bonding interactions. Individually, the interactions between ligands and RNA are weak and transient. However, upon the installation of a C-terminal thioester and an N-terminal cystine and the reduction of disulfide bond, they undergo template-directed native chemical ligation to form concatenated oligomeric products that bind tightly to the RNA template. In the absence of an RNA target, they self-deactivate by undergoing an intramolecular reaction to form cyclic products, rendering them inactive for further binding. The work has implications for the design of ultrashort nucleic acid ligands for targeting rCAG-repeat expansion associated with Huntington's disease and a number of other related neuromuscular and neurodegenerative disorders.

Design of a "Mini" Nucleic Acid Probe for Cooperative Binding of an RNA-Repeated Transcript Associated with Myotonic Dystrophy Type 1

Toxic RNAs containing expanded trinucleotide repeats are the cause of many neuromuscular disorders, one being myotonic dystrophy type 1 (DM1). DM1 is triggered by CTG-repeat expansion in the 3'-untranslated region of the DMPK gene, resulting in a toxic gain of RNA function through sequestration of MBNL1 protein, among others. Herein, we report the development of a relatively short miniPEG-γ peptide nucleic acid probe, two triplet repeats in length, containing terminal pyrene moieties, that is capable of binding rCUG repeats in a sequence-specific and selective manner. The newly designed probe can discriminate the pathogenic rCUG^exp from the wild-type transcript and disrupt the rCUG^exp-MBNL1 complex. The work provides a proof of concept for the development of relatively short nucleic acid probes for targeting RNA-repeat expansions associated with DM1 and other related neuromuscular disorders.

Template-free hierarchical self-assembly of a pyrene derivative into supramolecular nanorods

A pyrene derivative was designed to form, through a hierarchical process, well-defined supramolecular nanorods.

Lysine triggered ratiometric conversion of dynamic to static excimer of a pyrene derivative: aggregation-induced emission, nanomolar detection and human breast cancer cell (MCF7) imaging

Dynamic to static excimer formation followed by lysine concentration dependent spectral shift of a single crystal X-ray structurally characterized pyrene based probe allows highly selective ratiometric detection of lysine at the nanomolar level.

Pyrene-based mechanically interlocked SWNTs

Pyrene serves as a recognition motif to template the synthesis of mechanically interlocked derivatives of SWNTs.

Effect of sequence on the ionization behavior of a series of amphiphilic polypeptides

The behavior of five polypeptides made of hydrophilic and pH-responsive aspartic acid (Asp) and hydrophobic phenylalanine (Phe), which had been prepared by stitching together short well-defined sequences of Asp and Phe, was studied as a function of pH. The effect of pH on these polypeptides referred to as (Asp3Phe1)n, (Asp2Phe1)n, (Asp1Phe1)n, (Asp1Phe2)n, and (Asp1Phe3)n varied dramatically depending on their constituting sequence. The more hydrophobic polypeptides (Asp1Phe2)n and (Asp1Phe3)n behaved as if the Asp's were isolated from each other and showed an apparent pKa (pKa(app)) that remained constant with level of ionization (α = [Asp(-)]/[Asp]total) and equaled 5.4 and 6.4, respectively. The more hydrophilic polypeptides (Asp3Phe1)n and (Asp2Phe1)n behaved like weak polyacids showing a linear increase in pKa(app) with increasing α. The pKa(app) of (Asp1Phe1)n showed a trend as a function of α intermediate between the Asp-rich and Phe-rich polypeptides, behaving as if the Asp's were isolated at low α values (<0.35) but acting as a weak polyacid for large α values (>0.35). The effect that α, and thus the charge density of the polypeptides, had on the collapse and aggregation of the polypeptides was characterized by conducting static light scattering and fluorescence measurements. Static light scattering measurements demonstrated that all polypeptides precipitated and aggregated in solution at a critical charge density of 0.2. Fluorescence measurements with pyrene indicated that this behavior was due to the formation of Phe aggregates in water. Together, these experiments provide a complete description of how pH affects the behavior of a series of unique amphiphilic polypeptides designed with a well-defined sequence.

Probing the hydrophobic interactions of a series of pyrene end-labeled poly(ethylene oxide)s in aqueous solution using time-resolved fluorescence

The hydrophobic association of a series of poly(ethylene oxide)s covalently labeled at both ends with pyrene (PEO(X)-Py2 where X represents the number average molecular weight (Mn) of the PEO chains equal to 2, 5, 10, and 16.5 kDa) in aqueous solutions was investigated at different polymer concentrations (CP) using steady-state and time-resolved fluorescence measurements. Phase separation was observed with PEO(2 kDa)-Py2 and PEO(5 kDa)-Py2 samples at high CP. The steady-state fluorescence spectra showed that the ratios of excimer-to-monomer fluorescence intensities (IE/IM) of all PEO samples remained constant when CP was below 4 × 10(-5) M and decreased dramatically with increasing PEO chain length due to a decrease in intramolecular pyrene excimer formation. The IE/IM ratio in this regime was found to scale as Mn(-2.3±0.2). For CP > 4 × 10(-5) M, pyrene excimer is formed by both intra- and intermolecular interactions and the IE/IM ratio increases linearly with increasing CP except for PEO(2 kDa)-Py2 which undergoes phase separation. The decays obtained at various polymer concentrations were fitted according to a "sequential model" (SM) which assumes that the pyrene excimer is formed in a sequential manner. The molar fractions of all excited pyrene species and the rate constants for pyrene excimer formation were determined from the global analysis of the monomer and excimer fluorescence decays. The fraction of pyrenes that formed excimer from ground-state pyrene aggregates (fE0) was found to increase with CP in the regime where the pyrene excimer is formed both intra- and intermolecularly and decrease with Mn in the regime where the pyrene excimer is formed only intramolecularly. The fraction of pyrene pendants subject to hydrophobic interactions were used to determine the hydrophobic capture radius (Rc) of pyrene in water from the distribution of PEO end-to-end distances. Rc was found to equal 2.2 ± 0.2 nm using fE0.

Interaction of cyclodextrins with pyrene-modified polyacrylamide in a mixed solvent of water and dimethyl sulfoxide as studied by steady-state fluorescence

The interaction of β- and γ-cyclodextrins (β-CD and γ-CD, respectively) with polyacrylamide modified with pyrenyl (Py) residues (pAAmPy) was investigated in a mixed solvent of water and dimethyl sulfoxide (DMSO) by steady-state fluorescence. In the absence of CD, the fluorescence spectra indicated that the formation of Py dimers became less favorable with increasing volume fraction of DMSO (x(DMSO)). The fluorescence spectra at varying x(DMSO) and CD concentrations indicated that β-CD and γ-CD included monomeric and dimeric Py residues, respectively. Using the fluorescence spectra, equilibrium constants of the formation of Py dimers and the complexation of β-CD and γ-CD with Py residues were roughly estimated based on simplified equilibrium schemes.

Unexpected absorbance enhancement upon clustering dyes in a polymer matrix

PE films grafted with poly(methyl acrylate) and labeled with pyrene groups were obtained by irradiation with γ-rays in the presence of acryloyl chloride and further reacting them with 1-pyrenebutanol or 1-pyrenemethylamine. Characterization of the polymer films benefited from the dual use of the pyrene probe as an indicator of, first, polymer chain dynamics by monitoring pyrene excimer formation by fluorescence and, second, polymer morphology by staining the pyrene-rich domains of the films with RuO(4) for scanning electron microscopy (SEM). The grafted polymers labeled with 1-pyrenemethylamine showed much stronger absorbance than those labeled with 1-pyrenebutanol despite having similar pyrene contents. The fluorescence spectra of the grafted polymers labeled with 1-pyrenebutanol exhibited monomer emission, whereas those labeled with 1-pyrenemethylamine exhibited exclusively excimer emission. These dramatic differences could be accounted for by noting that labeling of the grafted poly(acryloyl chloride) with 1-pyrenemethylamine results in cross-linking of the polymer matrix, with an associated enhancement of the concentration of pyrene in the cross-linked domains, which was confirmed by SEM. Formation of discrete domains in the polymer film can induce multiple scattering at the domain boundaries which lengthens the path of light in the film and increases absorption of the light by the tightly packed pyrene-rich domains. Implementation of this effect for fabrication of plastic color filters should generate more efficient filters which should find numerous practical applications.

New insights in the study of pyrene excimer fluorescence to characterize macromolecules and their supramolecular assemblies in solution

This report highlights some of the recent developments that have been made in the quantitative analysis of fluorescence decays acquired with pyrene-labeled macromolecules. With these new analytical tools, macromolecules of different composition and architecture can now be labeled in a variety of ways with the pyrene chromophore, and the kinetics of pyrene excimer formation can be described to retrieve quantitative information about the internal dynamics of the macromolecules studied. In particular, this review presents the procedure that was followed to develop these new analytical tools and how the process of pyrene excimer formation with vinyl polymers, poly(L-glutamic acid), dendrimers, associative polymers, surfactants, and lipids labeled with pyrene has been successfully characterized thanks to these analysis programs.

Fluorescence studies of a series of monodisperse telechelic α,ω-dipyrenyl poly(N-isopropylacrylamide)s in ethanol and in water

Steady-state and time-resolved fluorescence measurements were performed on solutions in ethanol and in water (23 °C) of a series of poly(N-isopropylacrylamide)s labeled with a pyrenyl group at each chain end (Py2-PNIPAM) and ranging in molecular weight (Mn) from 5 900 to 44 500 g·mol−1. Water and ethanol are of similar solvent quality towards the PNIPAM chain. The pyrene labels, in contrast, are soluble in ethanol but not in water. The efficiency of excimer formation for Py2-PNIPAM samples in ethanol decreased with increasing chain length, a trend typical of pyrene end-labeled polymers in good solvents. The ratio IE/IM, where IE is the Py excimer emission intensity and IM is the Py monomer emission intensity, scaled as Mn−1.4, where Mn is the number-average molecular weight of the sample. The kinetics of excimer formation were more complex for aqueous Py2-PNIPAM solutions, as a consequence of pyrene–pyrene association prior to excitation. The excimer time-dependent profiles exhibited significantly faster rise times, compared with the situation in ethanol, and they could not be fitted with the traditional Birks scheme. The results are discussed in the context of the solution properties of telechelic amphiphilic PNIPAMs and are compared with data gathered previously in studies of dipyrenyl end-labeled poly(ethylene oxides), the only other polymers soluble in water and organic solvents subjected to similar studies in the past.

How switching the substituent of a pyrene derivative from a methyl to a butyl affects the fluorescence response of polystyrene randomly labeled with pyrene

A series of polystyrenes randomly labeled with 1-pyrenebutanol were prepared by copolymerizing styrene and 1-pyrenebutylacrylate yielding the CoBuE–PS series. Solutions of CoBuE–PS were prepared in nine organic solvents having viscosities ranging from 0.36 to 5.5 mPa·s and the fluorescence spectra and pyrene monomer and excimer fluorescence decays were acquired. Analysis of the fluorescence spectra yielded the IE/IM ratio, whereas analysis of the fluorescence decays with the fluorescence blob model (FBM) yielded the parameters N blobo , <kblob × Nblob> , and k blobo . These parameters were compared to those obtained with two other series of pyrene-labeled polystyrenes, which had been studied earlier, namely CoA–PS and CoE–PS where pyrene was attached to the polymer backbone via a methylamide and benzyl methylether linker, respectively. Although the parameters IE/IM, N blobo , <kblob × Nblob>, and k blobo took different values according to the specific nature of the linker connecting pyrene to the polystyrene backbone, they exhibited trends that were quite similar for all the pyrene-labeled polystyrene constructs. The excellent agreement between the parameters retrieved for the three different types of pyrene-labeled polystyrenes suggests that the FBM accounts satisfyingly for differences in the nature of the label used, while still retrieving information pertinent to the polymer of interest.