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Hamley IW. Self-Assembly, Bioactivity, and Nanomaterials Applications of Peptide Conjugates with Bulky Aromatic Terminal Groups. ACS APPLIED BIO MATERIALS 2023; 6:384-409. [PMID: 36735801 PMCID: PMC9945136 DOI: 10.1021/acsabm.2c01041] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The self-assembly and structural and functional properties of peptide conjugates containing bulky terminal aromatic substituents are reviewed with a particular focus on bioactivity. Terminal moieties include Fmoc [fluorenylmethyloxycarbonyl], naphthalene, pyrene, naproxen, diimides of naphthalene or pyrene, and others. These provide a driving force for self-assembly due to π-stacking and hydrophobic interactions, in addition to the hydrogen bonding, electrostatic, and other forces between short peptides. The balance of these interactions leads to a propensity to self-assembly, even for conjugates to single amino acids. The hybrid molecules often form hydrogels built from a network of β-sheet fibrils. The properties of these as biomaterials to support cell culture, or in the development of molecules that can assemble in cells (in response to cellular enzymes, or otherwise) with a range of fascinating bioactivities such as anticancer or antimicrobial activity, are highlighted. In addition, applications of hydrogels as slow-release drug delivery systems and in catalysis and other applications are discussed. The aromatic nature of the substituents also provides a diversity of interesting optoelectronic properties that have been demonstrated in the literature, and an overview of this is also provided. Also discussed are coassembly and enzyme-instructed self-assembly which enable precise tuning and (stimulus-responsive) functionalization of peptide nanostructures.
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2
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Ferguson AL, Tovar JD. Evolution of π-Peptide Self-Assembly: From Understanding to Prediction and Control. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:15463-15475. [PMID: 36475709 DOI: 10.1021/acs.langmuir.2c02399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Supramolecular materials derived from the self-assembly of engineered molecules continue to garner tremendous scientific and technological interest. Recent innovations include the realization of nano- and mesoscale particles (0D), rods and fibrils (1D), sheets (2D), and even extended lattices (3D). Our research groups have focused attention over the past 15 years on one particular class of supramolecular materials derived from oligopeptides with embedded π-electron units, where the oligopeptides can be viewed as substituents or side chains to direct the assembly of the central π-electron cores. Upon assembly, the π-systems are driven into close cofacial architectures that facilitate a variety of energy migration processes within the nanomaterial volume, including exciton transport, voltage transmission, and photoinduced electron transfer. Like many practitioners of supramolecular materials science, many of our initial molecular designs were designed with substantial inspiration from biologically occurring self-assembly coupled with input from chemical intuition and molecular modeling and simulation. In this feature article, we summarize our current understanding of the π-peptide self-assembly process as documented through our body of publications in this area. We address fundamental spectroscopic and computational tools used to extract information regarding the internal structures and energetics of the π-peptide assemblies, and we address the current state of the art in terms of recent applications of data science tools in conjunction with high-throughput computational screening and experimental assays to guide the efficient traversal of the π-peptide molecular design space. The abstract image details our integrated program of chemical synthesis, spectroscopic and functional characterization, multiscale simulation, and machine learning which has advanced the understanding and control of the assembly of synthetic π-conjugated peptides into supramolecular nanostructures with energy and biomedical applications.
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Affiliation(s)
- Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218 United States
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3
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Voltage controlled bio-organic inverse phototransistor. Biointerphases 2022; 17:021003. [PMID: 35303768 DOI: 10.1116/6.0001692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Thin films of poly-d-lysine act as polar organic and are also light sensitive. The capacitance-voltage, current-voltage, and transistor behavior were studied to gauge the photoresponse of possible poly-d-lysine thin film devices both with and without methylene blue as an additive. Transistors fabricated from poly-d-lysine act as inverse phototransistors, i.e., the on-state current is greatest in the absence of illumination. The poly-d-lysine thin film capacitance and the transistor current decrease with illumination, both with and without methylene blue as an additive. This suggests that the unbinding of photo exciton is significantly hindered in this system which is supported by the significant charge carrier lifetime for poly-d-lysine films both with and without methylene blue. For the majority carrier, the transistor geometry appears to depend on the gate voltage; in other words, the majority carrier depends on the polarization of the poly-d-lysine films, both with and without methylene blue as an additive.
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4
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Peressotti S, Koehl GE, Goding JA, Green RA. Self-Assembling Hydrogel Structures for Neural Tissue Repair. ACS Biomater Sci Eng 2021; 7:4136-4163. [PMID: 33780230 PMCID: PMC8441975 DOI: 10.1021/acsbiomaterials.1c00030] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 03/10/2021] [Indexed: 12/12/2022]
Abstract
Hydrogel materials have been employed as biological scaffolds for tissue regeneration across a wide range of applications. Their versatility and biomimetic properties make them an optimal choice for treating the complex and delicate milieu of neural tissue damage. Aside from finely tailored hydrogel properties, which aim to mimic healthy physiological tissue, a minimally invasive delivery method is essential to prevent off-target and surgery-related complications. The specific class of injectable hydrogels termed self-assembling peptides (SAPs), provide an ideal combination of in situ polymerization combined with versatility for biofunctionlization, tunable physicochemical properties, and high cytocompatibility. This review identifies design criteria for neural scaffolds based upon key cellular interactions with the neural extracellular matrix (ECM), with emphasis on aspects that are reproducible in a biomaterial environment. Examples of the most recent SAPs and modification methods are presented, with a focus on biological, mechanical, and topographical cues. Furthermore, SAP electrical properties and methods to provide appropriate electrical and electrochemical cues are widely discussed, in light of the endogenous electrical activity of neural tissue as well as the clinical effectiveness of stimulation treatments. Recent applications of SAP materials in neural repair and electrical stimulation therapies are highlighted, identifying research gaps in the field of hydrogels for neural regeneration.
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Affiliation(s)
- Sofia Peressotti
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
| | - Gillian E. Koehl
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
| | - Josef A. Goding
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
| | - Rylie A. Green
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
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5
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Panda SS, Shmilovich K, Herringer NSM, Marin N, Ferguson AL, Tovar JD. Computationally Guided Tuning of Peptide-Conjugated Perylene Diimide Self-Assembly. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:8594-8606. [PMID: 34213333 DOI: 10.1021/acs.langmuir.1c01213] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Peptide-π-conjugated materials are important for biointerfacing charge-transporting applications due to their aqueous compatibility and formation of long-range π-electron networks. Perylene diimides (PDIs), well-established charge-transporting π systems, can self-assemble in aqueous solutions when conjugated with amino acids. In this work, we leveraged computational guidance from our previous work to access two different self-assembled architectures from PDI-amino acid conjugates. Furthermore, we expanded the design rule to other sequences to learn that the closest amino acids to the π core have a significant effect on the photophysical properties of the resulting assemblies. By simply altering glycine to alanine at the closest residue position, we observed significantly different electronic properties as revealed through UV-vis, photoluminescence, and circular dichroism spectroscopies. Accompanying molecular dynamics simulations revealed two distinct types of self-assembled architectures: cofacial structures when the smaller glycine residue is at the closest residue position to the π core versus rotationally shifted structures when glycine is substituted for the larger alanine. This study illustrates the use of tandem computations and experiments to unearth and understand new design rules for supramolecular materials and exposes a modest amino acid substitution as a means to predictably modulate the supramolecular organization and engineer the photophysical properties of π-conjugated peptidic materials.
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Affiliation(s)
- Sayak Subhra Panda
- Department of Chemistry, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Kirill Shmilovich
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Nicholas S M Herringer
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Nicolas Marin
- Department of Chemistry, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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6
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Ding J, Xu N, Nguyen MT, Qiao Q, Shi Y, He Y, Shao Q. Machine learning for molecular thermodynamics. Chin J Chem Eng 2021. [DOI: 10.1016/j.cjche.2020.10.044] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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7
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Garifullin R, Guler MO. Electroactive peptide-based supramolecular polymers. Mater Today Bio 2021; 10:100099. [PMID: 33778465 PMCID: PMC7985408 DOI: 10.1016/j.mtbio.2021.100099] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Revised: 01/31/2021] [Accepted: 02/02/2021] [Indexed: 12/20/2022] Open
Abstract
The electroactivity as a supramolecular feature of intelligently designed self-assembled systems stimulates a wide interest in development of new stimuli-responsive biomaterials. A diverse set of nanostructures are fabricated through programmed self-assembly of molecules for functional materials. Electroactive groups are conjugated as a functional moiety for organic semiconductor applications. In this review, we present recent examples of self-assembling peptide molecules and electroactive units for supramolecular functional electronic and optical materials with potential biomedical and bioelectronics applications.
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Affiliation(s)
- Ruslan Garifullin
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420021 Kazan, Russian Federation
| | - Mustafa O. Guler
- The Pritzker School of Molecular Engineering, The University of Chicago, Chicago, IL, 60637, USA
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8
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Fortunato A, Sanzone A, Mattiello S, Beverina L, Mba M. The pH- and salt-controlled self-assembly of [1]benzothieno[3,2- b][1]-benzothiophene–peptide conjugates in supramolecular hydrogels. NEW J CHEM 2021. [DOI: 10.1039/d1nj02294f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Salt- and pH-triggered supramolecular hydrogels were obtained from a novel [1]benzothieno[3,2-b][1]benzothiophene (BTBT)-peptide hybrid.
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Affiliation(s)
- Anna Fortunato
- Department of Chemical Sciences
- University of Padova
- Padova, PD
- Italy
| | - Alessandro Sanzone
- Department of Materials Science
- University of Milano-Bicocca and INSTM
- Milano I-20125
- Italy
| | - Sara Mattiello
- Department of Materials Science
- University of Milano-Bicocca and INSTM
- Milano I-20125
- Italy
| | - Luca Beverina
- Department of Materials Science
- University of Milano-Bicocca and INSTM
- Milano I-20125
- Italy
| | - Miriam Mba
- Department of Chemical Sciences
- University of Padova
- Padova, PD
- Italy
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9
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Dibble JP, Troyano-Valls C, Tovar JD. A Tale of Three Hydrophobicities: Impact of Constitutional Isomerism on Nanostructure Evolution and Electronic Communication in π-Conjugated Peptides. Macromolecules 2020. [DOI: 10.1021/acs.macromol.0c01492] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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10
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Panda SS, Shmilovich K, Ferguson AL, Tovar JD. Computationally Guided Tuning of Amino Acid Configuration Influences the Chiroptical Properties of Supramolecular Peptide-π-Peptide Nanostructures. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:6782-6792. [PMID: 32491857 DOI: 10.1021/acs.langmuir.0c00961] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Self-assembled supramolecular materials derived from peptidic macromolecules with π-conjugated building blocks are of enormous interest because of their aqueous solubility and biocompatibility. The design rules to achieve tailored optoelectronic properties from these types of materials can be guided by computation and virtual screening rather than intuition-based experimental trial-and-error. Using machine learning, we reported previously that the supramolecular chirality in self-assembled aggregates from VEVAG-π-GAVEV type peptidic materials was most strongly influenced by hydrogen bonding and hydrophobic packing of the alanine and valine residues. Herein, we build upon this idea to demonstrate through molecular-level experimental characterization and all-atom molecular modeling that varying the stereogenic centers of these residues has a profound impact on the optoelectronic properties of the supramolecular aggregates, whereas the variation of stereogenic centers of other residues has only nominal influence on these properties. This study highlights the synergy between computational and experimental insight relevant to the control of chiroptical or other electronic properties associated with supramolecular materials.
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Affiliation(s)
| | - Kirill Shmilovich
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
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11
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Jira ER, Shmilovich K, Kale TS, Ferguson A, Tovar JD, Schroeder CM. Effect of Core Oligomer Length on the Phase Behavior and Assembly of π-Conjugated Peptides. ACS APPLIED MATERIALS & INTERFACES 2020; 12:20722-20732. [PMID: 32286786 DOI: 10.1021/acsami.0c02095] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Biohybrid molecules are a versatile class of materials for controlling the assembly behavior and functional properties of electronically active organics. In this work, we study the effect of the size of the π-conjugated core on the assembly and phase behavior for a series of π-conjugated peptides consisting of oligothiophene cores of defined lengths flanked by sequence-defined peptides (OTX, where X = 4, 5, 6 is the number of thiophene core units). Interestingly, we find that π-conjugated peptides with relatively short OT4 cores assemble into ordered, high aspect ratio, one-dimensional (1D) structures, whereas π-conjugated peptides with longer OT5 and OT6 cores assemble into disordered structures or lower aspect ratio 1D structures depending on assembly conditions. Phase diagrams for assembled materials are experimentally determined as a function of ionic strength, pH, temperature, and peptide concentration, revealing the impact of molecular sequence and π-conjugated core length on assembled morphologies. Molecular dynamics (MD) simulations are further used to probe the origins of microscale differences in assembly that arise from subtle changes in molecular identity. Broadly, our work elucidates the mechanisms governing the assembly of π-conjugated peptides, which will aid in efficient materials processing for soft electronic applications. Overall, these results highlight the complex phase behavior of biohybrid materials, including the impact of molecular sequence on assembly behavior and morphology.
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Affiliation(s)
- Edward R Jira
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Kirill Shmilovich
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Tejaswini S Kale
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Andrew Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Charles M Schroeder
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
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12
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Shmilovich K, Mansbach RA, Sidky H, Dunne OE, Panda SS, Tovar JD, Ferguson AL. Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation. J Phys Chem B 2020; 124:3873-3891. [PMID: 32180410 DOI: 10.1021/acs.jpcb.0c00708] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Electronically active organic molecules have demonstrated great promise as novel soft materials for energy harvesting and transport. Self-assembled nanoaggregates formed from π-conjugated oligopeptides composed of an aromatic core flanked by oligopeptide wings offer emergent optoelectronic properties within a water-soluble and biocompatible substrate. Nanoaggregate properties can be controlled by tuning core chemistry and peptide composition, but the sequence-structure-function relations remain poorly characterized. In this work, we employ coarse-grained molecular dynamics simulations within an active learning protocol employing deep representational learning and Bayesian optimization to efficiently identify molecules capable of assembling pseudo-1D nanoaggregates with good stacking of the electronically active π-cores. We consider the DXXX-OPV3-XXXD oligopeptide family, where D is an Asp residue and OPV3 is an oligophenylenevinylene oligomer (1,4-distyrylbenzene), to identify the top performing XXX tripeptides within all 203 = 8000 possible sequences. By direct simulation of only 2.3% of this space, we identify molecules predicted to exhibit superior assembly relative to those reported in prior work. Spectral clustering of the top candidates reveals new design rules governing assembly. This work establishes new understanding of DXXX-OPV3-XXXD assembly, identifies promising new candidates for experimental testing, and presents a computational design platform that can be generically extended to other peptide-based and peptide-like systems.
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Affiliation(s)
- Kirill Shmilovich
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Rachael A Mansbach
- Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Hythem Sidky
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Olivia E Dunne
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Sayak Subhra Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States.,Institute of NanoBioTechnology, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States.,Institute of NanoBioTechnology, Johns Hopkins University, Baltimore, Maryland 21218, United States.,Department of Materials Science and Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
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13
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Weber R, McCullagh M. The Role of Hydrophobicity in the Stability and pH-Switchability of (RXDX) 4 and Coumarin-(RXDX) 4 Conjugate β-Sheets. J Phys Chem B 2020; 124:1723-1732. [PMID: 32045245 DOI: 10.1021/acs.jpcb.0c00048] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
pH-Switchable, self-assembling materials are of interest in biological imaging and sensing applications. Here we propose that combining the pH-switchability of RXDX (X = Ala, Val, Leu, Ile, Phe) peptides and the optical properties of coumarin creates an ideal candidate for these materials. This suggestion is tested with a thorough set of all-atom molecular dynamics simulations. We first investigate the dependence of pH-switchabiliy on the identity of the hydrophobic residue, X, in the bare (RXDX)4 systems. Increasing the hydrophobicity stabilizes the fiber which, in turn, reduces the pH-switchabilty of the system. This behavior is found to be somewhat transferable to systems in which a single hydrophobic residue is replaced with a coumarin containing amino acid. In this case, conjugates with X = Ala are found to be unstable at both pHs, while conjugates with X = Val, Leu, Ile, and Phe are found to form stable β-sheets at least at neutral pH. The coumarin-(RFDF)4 conjugate is found to have the largest relative entropy value of 0.884 ± 0.001 between neutral and acidic coumarin ordering distributions. Thus, we posit that coumarin-(RFDF)4 containing peptide sequences are ideal candidates for pH-sensing bioelectronic materials.
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Affiliation(s)
- Ryan Weber
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Martin McCullagh
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74074, United States
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14
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Thurston BA, Shapera EP, Tovar JD, Schleife A, Ferguson AL. Revealing the Sequence-Structure-Electronic Property Relation of Self-Assembling π-Conjugated Oligopeptides by Molecular and Quantum Mechanical Modeling. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:15221-15231. [PMID: 31657579 DOI: 10.1021/acs.langmuir.9b02593] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Self-assembled nanoaggregates of π-conjugated synthetic peptides present a biocompatible and highly tunable alternative to silicon-based optical and electronic materials. Understanding the relationship between structural morphology and electronic properties of these assemblies is critical for understanding and controlling their mechanical, optical, and electronic responses. In this work, we combine all-atom classical molecular simulations with quantum mechanical electronic structure calculations to ascertain the sequence-structure-electronic property relationship within a family of Asp-X-X-quaterthiophene-X-X-Asp (DXX-OT4-XXD) oligopeptides in which X is one of the five amino acids {Ala, Phe, Gly, Ile, Val} ({A, F, G, I, V}). Molecular dynamics simulations reveal that smaller amino acid substituents (A, G) favor linear stacking within a peptide dimer, whereas larger groups (F, I, V) induce larger twist angles between the peptides. Density functional theory calculations on the dimer show the absorption spectrum to be dominated by transitions between carbon and sulfur p orbitals. Although the absorption spectrum is largely insensitive to the relative twist angle, the highest occupied molecular orbital strongly localizes onto one molecule within the dimer at large twist angles, impeding the efficiency of transport between molecules. Our results provide a fundamental understanding of the relation between peptide orientation and electronic structure and offer design precepts for rational engineering of these systems.
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Affiliation(s)
- Bryce A Thurston
- Center for Integrated Nanotechnologies , Sandia National Laboratories , P.O. Box 5800, Albuquerque , New Mexico 87185 , United States
| | - Ethan P Shapera
- Department of Physics , University of Illinois at Urbana-Champaign , 1110 West Green Street , Urbana , Illinois 61801 , United States
| | - John D Tovar
- Department of Chemistry, Krieger School of Arts and Sciences , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- Institute for NanoBioTechnology , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- Department of Materials Science and Engineering, Whiting School of Engineering , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - André Schleife
- Department of Materials Science and Engineering , 1304 West Green Street , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 , United States
- Materials Research Laboratory , University of Illinois at Urbana-Champaign , 104 South Goodwin Avenue , Urbana , Illinois 61801 , United States
- National Center for Supercomputing Applications , University of Illinois at Urbana-Champaign , 1205 West Clark Street , Urbana , Illinois 61801 , United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering , University of Chicago , 5640 South Ellis Avenue , Chicago , Illinois 60637 , United States
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15
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Panda SS, Shmilovich K, Ferguson AL, Tovar JD. Controlling Supramolecular Chirality in Peptide-π-Peptide Networks by Variation of the Alkyl Spacer Length. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:14060-14073. [PMID: 31566986 DOI: 10.1021/acs.langmuir.9b02683] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Self-assembled supramolecular organic materials with π-functionalities are of great interest because of their applications as biocompatible nanoelectronics. A detailed understanding of molecular parameters to modulate the formation of hierarchical structures can inform design principles for materials with engineered optical and electronic properties. In this work, we combine molecular-level characterization techniques with all-atom molecular simulations to investigate the subtle relationship between the chemical structure of peptide-π-peptide molecules and the emergent supramolecular chirality of their spontaneously self-assembled nanoaggregates. We demonstrate through circular dichroism measurements that we can modulate the chirality by incorporating alkyl spacers of various lengths in between the peptides and thienylene-phenylene π-system chromophores: even numbers of alkyl carbons in the spacer units (0, 2) induce M-type helical character whereas odd numbers (1, 3) induce P-type. Corroborating molecular dynamics simulations and explicating machine learning analysis techniques identify hydrogen bonding and hydrophobic packing to be the principal discriminants of the observed chirality switches. Our results present a molecular-level design rule to engineer chirality into optically and electronically active nanoaggregates of these peptidic building blocks by exploiting systematic variations in the alkyl spacer length.
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Affiliation(s)
| | - Kirill Shmilovich
- Pritzker School of Molecular Engineering , University of Chicago , 5640 South Ellis Avenue , Chicago , Illinois 60637 , United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering , University of Chicago , 5640 South Ellis Avenue , Chicago , Illinois 60637 , United States
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16
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Wijerathne NK, Kumar M, Ulijn RV. Fmoc‐Dipeptide/Porphyrin Molar Ratio Dictates Energy Transfer Efficiency in Nanostructures Produced by Biocatalytic Co‐Assembly. Chemistry 2019; 25:11847-11851. [DOI: 10.1002/chem.201902819] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 07/12/2019] [Indexed: 11/11/2022]
Affiliation(s)
- Nadeesha K. Wijerathne
- Ph.D. Program in Chemistry The Graduate Center of the, City University of New York New York NY 10016 USA
- Advanced Science Research Center (ASRC) at the Graduate Center of the, City University of New York (CUNY) 85 St Nicholas Terrace New York 10031 USA
- Department of Chemistry, City University of New York (CUNY) Hunter College 695 Park Avenue New York 10065 USA
| | - Mohit Kumar
- Advanced Science Research Center (ASRC) at the Graduate Center of the, City University of New York (CUNY) 85 St Nicholas Terrace New York 10031 USA
| | - Rein V. Ulijn
- Ph.D. Program in Chemistry The Graduate Center of the, City University of New York New York NY 10016 USA
- Ph.D. Program in Biochemistry The Graduate Center of the, City University of New York New York NY 10016 USA
- Advanced Science Research Center (ASRC) at the Graduate Center of the, City University of New York (CUNY) 85 St Nicholas Terrace New York 10031 USA
- Department of Chemistry, City University of New York (CUNY) Hunter College 695 Park Avenue New York 10065 USA
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17
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Valverde LR, Li B, Schroeder CM, Wilson WL. In Situ Photophysical Characterization of π-Conjugated Oligopeptides Assembled via Continuous Flow Processing. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:10947-10957. [PMID: 31340647 DOI: 10.1021/acs.langmuir.9b01360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Bioinspired materials have been developed with the aim of harnessing natural self-assembly for precisely engineered functionality. Microfluidics is poised to play a key role in the directed assembly of advanced materials with ordered nano and mesoscale features. More importantly, there is a strong need for understanding the kinetics of continuous assembly processes. In this work, we describe a continuous microfluidic system for the assembly and alignment of synthetic oligopeptides with π-conjugated cores using a three-dimensional (3D) flow focusing of inlet reactant streams. This system facilitates in situ confocal fluorescence microscopy and in situ fluorescence lifetime imaging microscopy (FLIM), which can be used in unprecedented capacity to characterize the integrity of peptides during the assembly process. To achieve continuous assembly, we integrate chevron patterns in the ceiling and floor of the microdevice to generate a 3D-focused sheath flow of the reactant peptide. Consequently, the peptide stream is directed toward an acidic triggering stream in a cross-slot geometry which mediates assembly into higher-order fiber-like structures. Using this approach, the focused peptide stream is assembled using a planar extensional flow, which ensures high degrees of microstructural alignment within the assembled material. We demonstrate the efficacy of this approach using three different synthetic oligopeptides, and in all cases, we observe the efficient and continuous assembly of oligopeptides. In addition, finite element simulations are used to guide device design and to validate 3D focusing. Overall, this approach presents an efficient and effective method for the continuous assembly and alignment of ordered materials using microfluidics.
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Affiliation(s)
- Lawrence R Valverde
- Department of Materials Science and Engineering , University of Illinois at Urbana-Champaign , 1304 West Green Street , Urbana , Illinois 61801 , United States
| | - Bo Li
- Department of Chemical and Biomolecular Engineering , University of Illinois at Urbana-Champaign , 600 South Mathews Avenue , Urbana , Illinois 61801 , United States
| | - Charles M Schroeder
- Department of Materials Science and Engineering , University of Illinois at Urbana-Champaign , 1304 West Green Street , Urbana , Illinois 61801 , United States
- Department of Chemical and Biomolecular Engineering , University of Illinois at Urbana-Champaign , 600 South Mathews Avenue , Urbana , Illinois 61801 , United States
| | - William L Wilson
- Department of Materials Science and Engineering , University of Illinois at Urbana-Champaign , 1304 West Green Street , Urbana , Illinois 61801 , United States
- Frederick Seitz Materials Research Laboratory , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 , United States
- Center for Nanoscale Systems, Faculty of Arts and Sciences, Harvard University , Cambridge , Massachusetts 02138 , United States
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18
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Kale TS, Ardoña HAM, Ertel A, Tovar JD. Torsional Impacts on Quaterthiophene Segments Confined within Peptidic Nanostructures. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:2270-2282. [PMID: 30642185 DOI: 10.1021/acs.langmuir.8b03708] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The co-assembly behavior of peptide-π-peptide and peptide-alkyl-peptide triblock molecules that form one-dimensional (1D) nanostructures under acidic, aqueous environments is dependent on the peptide sequence and the torsional constraints imposed within the nanomaterial volume. Although a hydrophilic tripeptide sequence (Asp-Asp-Asp, DDD-) previously promoted isolation/dilution of minority π-electron components in the matrix of aliphatic peptides, a β-sheet promoting sequence (Asp-Val-Val, DVV-) led to blocks of the two components distributed within larger 1D self-assembled nanostructures. Furthermore, torsional restrictions exerted on the oligoaromatic π-electron unit by the self-assembly process can lead to changes in its conformation (for example, planarity), which has ramifications on its functionality within the peptide matrix. Here, we study this impact on thiophene-based π-electron units with inherently different geometries, viz., relatively planar 2,2':5',2″:5″,2‴-quaterthiophene and 3″,4'-dimethyl-2,2':5',2″:5″,2‴-quaterthiophene, which is twisted at the core bithiophene unit due to the presence of two methyl groups. These peptides were co-assembled at 5 and 20 mol % with peptide- n-decyl-peptide triblock molecules, and the resultant assemblies were studied using UV-vis absorption, photoluminescence, and circular dichroism spectroscopies. We found that torsional restriction in dimethylated quaterthiophene units can impact the stacking behavior of these 1D peptide nanoassemblies and have consequences on their photophysical properties. Additionally, these insights help in the understanding of the dependence of the optoelectronic properties of these materials on both the intrinsic conformation of π-units and the geometric constraints imposed by their immediate local environment under aqueous conditions.
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19
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Mansbach RA, Ferguson AL. Patchy Particle Model of the Hierarchical Self-Assembly of π-Conjugated Optoelectronic Peptides. J Phys Chem B 2018; 122:10219-10236. [DOI: 10.1021/acs.jpcb.8b05781] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Rachael A. Mansbach
- Department of Physics, University of Illinois at Urbana−Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States
| | - Andrew L. Ferguson
- Department of Physics, University of Illinois at Urbana−Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States
- Department of Materials Science and Engineering, University of Illinois at Urbana−Champaign, 1304 W Green Street, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
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20
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Ing NL, El-Naggar MY, Hochbaum AI. Going the Distance: Long-Range Conductivity in Protein and Peptide Bioelectronic Materials. J Phys Chem B 2018; 122:10403-10423. [DOI: 10.1021/acs.jpcb.8b07431] [Citation(s) in RCA: 83] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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21
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Valverde LR, Thurston BA, Ferguson AL, Wilson WL. Evidence for Prenucleated Fibrilogenesis of Acid-Mediated Self-Assembling Oligopeptides via Molecular Simulation and Fluorescence Correlation Spectroscopy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:7346-7354. [PMID: 29842783 DOI: 10.1021/acs.langmuir.8b00312] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
An important step in controlling biomimetic amyloid systems is understanding the self-assembly reaction kinetics. We are interested in a family of such materials characterized by symmetric sequences of amino acids flanking a π-conjugated functional core. Many of these materials rapidly self-assemble into long fibers upon protonation in an acidic environment. Despite extensive investigation of these materials' properties, little is yet understood regarding their reaction kinetics. Based on previous studies, we have chosen DFAG-4T-GAFD as a representative system and conducted molecular dynamics simulations to show that although large-scale assembly is induced by lowering pH, some degree of assembly is thermodynamically favorable in high-pH nonprotonating environments. These results are consistent with findings for other systems such as DFAG-OPV-GAFD. The nonprotonated aggregation also appears to be concentration dependent, occurring at concentrations of 100 nM and above. Single molecule measurements using fluorescence correlation spectroscopy provide experimental support for these computational predictions. We find evidence of spontaneous aggregation in aqueous solutions of peptides with concentrations as low as 100 nM; however, 10 nM solutions appear to be largely homogeneous solutions of unassembled monomer. These results indicate that the simplest explanations for kinetics of acid-mediated assembly-protonation-induced nucleation by monomeric addition followed by subsequent stages of aggregation and elongation-are inappropriate in this system. In fact, the system only exists as pure monomer in very low concentrations, nucleation actually occurs in the absence of protonating elements at concentrations typically used for experiments, and pH triggered assembly proceeds from these preassembled aggregates. Accordingly, triggered assembly must be considered to operate outside the domain of nucleation-dependent models.
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Affiliation(s)
- Lawrence R Valverde
- Department of Materials Science and Engineering , University of Illinois at Urbana-Champaign , 1304 West Green Street , Urbana , Illinois 61801 , United States
- Frederick Seitz Materials Research Laboratory , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 , United States
| | - Bryce A Thurston
- Department of Physics , University of Illinois at Urbana-Champaign , 1110 West Green Street , Urbana , Illinois 61801 , United States
| | - Andrew L Ferguson
- Department of Materials Science and Engineering , University of Illinois at Urbana-Champaign , 1304 West Green Street , Urbana , Illinois 61801 , United States
- Frederick Seitz Materials Research Laboratory , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 , United States
- Department of Chemical and Biomolecular Engineering , University of Illinois at Urbana-Champaign , 600 South Mathews Avenue , Urbana , Illinois 61801 , United States
- Department of Physics , University of Illinois at Urbana-Champaign , 1110 West Green Street , Urbana , Illinois 61801 , United States
| | - William L Wilson
- Department of Materials Science and Engineering , University of Illinois at Urbana-Champaign , 1304 West Green Street , Urbana , Illinois 61801 , United States
- Frederick Seitz Materials Research Laboratory , University of Illinois at Urbana-Champaign , Urbana , Illinois 61801 , United States
- Center for Nanoscale Systems, Faculty of Arts and Sciences , Harvard University , Cambridge , Massachusetts 02138 , United States
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22
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Wang J, Gayatri M, Ferguson AL. Coarse-Grained Molecular Simulation and Nonlinear Manifold Learning of Archipelago Asphaltene Aggregation and Folding. J Phys Chem B 2018; 122:6627-6647. [DOI: 10.1021/acs.jpcb.8b01634] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jiang Wang
- Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States
| | - Mohit Gayatri
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Andrew L. Ferguson
- Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, 1304 West Green Street, Urbana, Illinois 61801, United States
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23
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Del Borgo MP, Kulkarni K, Tonta MA, Ratcliffe JL, Seoudi R, Mechler AI, Perlmutter P, Parkington HC, Aguilar MI. β3-tripeptides act as sticky ends to self-assemble into a bioscaffold. APL Bioeng 2018; 2:026104. [PMID: 31069301 PMCID: PMC6481712 DOI: 10.1063/1.5020105] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 04/03/2018] [Indexed: 12/27/2022] Open
Abstract
Peptides comprised entirely of β3-amino acids, commonly referred to as β-foldamers, have been shown to self-assemble into a range of materials. Previously, β-foldamers have been functionalised via various side chain chemistries to introduce function to these materials without perturbation of the self-assembly motif. Here, we show that insertion of both rigid and flexible molecules into the backbone structure of the β-foldamer did not disturb the self-assembly, provided that the molecule is positioned between two β3-tripeptides. These hybrid β3-peptide flanked molecules self-assembled into a range of structures. α-Arginlyglycylaspartic acid (RGD), a commonly used cell attachment motif derived from fibronectin in the extracellular matrix, was incorporated into the peptide sequence in order to form a biomimetic scaffold that would support neuronal cell growth. The RGD-containing sequence formed the desired mesh-like scaffold but did not encourage neuronal growth, possibly due to over-stimulation with RGD. Mixing the RGD peptide with a β-foldamer without the RGD sequence produced a well-defined scaffold that successfully encouraged the growth of neurons and enabled neuronal electrical functionality. These results indicate that β3-tripeptides can form distinct self-assembly units separated by a linker and can form fibrous assemblies. The linkers within the peptide sequence can be composed of a bioactive α-peptide and tuned to provide a biocompatible scaffold.
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Affiliation(s)
- Mark P. Del Borgo
- Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia
- Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
| | - Ketav Kulkarni
- Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia
- Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
| | - Mary A. Tonta
- Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
- Department of Physiology, Monash University, Clayton, VIC 3800, Australia
| | - Jessie L. Ratcliffe
- Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia
- Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
| | - Rania Seoudi
- Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC 3086, Australia
| | - Adam I. Mechler
- Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC 3086, Australia
| | | | - Helena C. Parkington
- Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
- Department of Physiology, Monash University, Clayton, VIC 3800, Australia
| | - Marie-Isabel Aguilar
- Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia
- Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
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24
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Thurston BA, Ferguson AL. Machine learning and molecular design of self-assembling -conjugated oligopeptides. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1469754] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- Bryce A. Thurston
- Department of Physics, University of Illinois at Urbana-Champaign , Urbana, IL, USA
| | - Andrew L. Ferguson
- Department of Physics, University of Illinois at Urbana-Champaign , Urbana, IL, USA
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign , Urbana, IL, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign , Urbana, IL, USA
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25
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Panda SS, Katz HE, Tovar JD. Solid-state electrical applications of protein and peptide based nanomaterials. Chem Soc Rev 2018; 47:3640-3658. [DOI: 10.1039/c7cs00817a] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This review summarizes recent advancements in electrical properties and applications of natural proteins and mutated variants, synthetic oligopeptides and peptide–π conjugates.
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Affiliation(s)
- Sayak Subhra Panda
- Department of Chemistry
- Krieger School of Arts and Sciences
- Johns Hopkins University
- Baltimore
- USA
| | - Howard E. Katz
- Department of Chemistry
- Krieger School of Arts and Sciences
- Johns Hopkins University
- Baltimore
- USA
| | - John D. Tovar
- Department of Chemistry
- Krieger School of Arts and Sciences
- Johns Hopkins University
- Baltimore
- USA
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26
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Tovar JD. Photon management in supramolecular peptide nanomaterials. BIOINSPIRATION & BIOMIMETICS 2017; 13:015004. [PMID: 29076807 DOI: 10.1088/1748-3190/aa9685] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Self-assembling peptides with covalent pi-electron functionality offer new ways to create delocalized conduits within protein-based nanomaterials. My group's recent research is summarized in this regard, detailing foundational self-assembly and photophysical characterizations that validate the electronic couplings existing within the resulting peptidic nanomaterials. Using these initial studies as a benchmark, ongoing studies to create even more complex photonic energy delocalization schemes are presented, spanning excitonic and Förster energy transfer to low-bandgap dopant sites (whereby 46% of the observed photoluminescence could be quenched by the addition of 1 mol% of an energy acceptor), the creation of charge separated states following photoinduced electron transfer that persisted for over a nanosecond, and use of kinetic control to dictate self-sorting (at long time scales, ca. several hours) or intimate coassembly (at short time scales, ca. several seconds) of multiple peptide components. Peptide coassemblies are described that exhibit both directed exciton migration to low-energy sites and follow-up charge separation events, very much in mimicry with relevant photosynthetic processes.
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Affiliation(s)
- John D Tovar
- Department of Chemistry, Department of Materials Science and Engineering, Institute for NanoBioTechnology, Johns Hopkins University, 3400 North Charles Street (NCB 316), Baltimore, MD 21218, United States of America
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27
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Singh AK, Krishnamoorthy K. Self-Assembled Spheres, Flowers, and Fibers from the Same Backbone and Similar Side Chains. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:13401-13406. [PMID: 29087204 DOI: 10.1021/acs.langmuir.7b02728] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Rylene imides (RIs) self-assemble into various nanostructures. Often, the synthesis of unsymmetrical RIs (URIs) is required to achieve nanostructures. However, the synthesis of URIs is nontrivial. Thus, a structurally similar alternative is desirable. iso-Indigo (i-indigo) has a π core and lactam rings that are structurally similar to the RIs. Unsymmetrical iso-indigo (i-indigo) can be easily synthesized by condensing oxindole and isatin. We have synthesized a series of unsymmetrical i-indigo molecules. In these molecules, the π-π interaction, hydrogen bonding, and van der Waals interactions are in operation. Because of these, the molecules self-assemble into spheres, fibers, and dahlia flower morphologies. If the hydrogen bonding interaction is disrupted, then all of them form fibers. Control experiments indicate that the complete absence of hydrogen bonding is deleterious to self-assembly. We also show that the lower analogs of i-indigo are not sufficient to form self-assembled nanostructures.
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Affiliation(s)
- Anup Kumar Singh
- CSIR-National Chemical Laboratory, CSIR-Networks of Institutes for Solar Energy , Dr Homi Bhabha Road, Pune 411008, India
| | - Kothandam Krishnamoorthy
- CSIR-National Chemical Laboratory, CSIR-Networks of Institutes for Solar Energy , Dr Homi Bhabha Road, Pune 411008, India
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28
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Wang J, Ferguson AL. Nonlinear machine learning in simulations of soft and biological materials. MOLECULAR SIMULATION 2017. [DOI: 10.1080/08927022.2017.1400164] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- J. Wang
- Department of Physics, University of Illinois Urbana-Champaign , Urbana, IL, USA
| | - A. L. Ferguson
- Department of Physics, University of Illinois Urbana-Champaign , Urbana, IL, USA
- Department of Materials Science and Engineering, University of Illinois Urbana-Champaign , Urbana, IL, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign , Urbana, IL, USA
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29
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Zhou Y, Li B, Li S, Ardoña HAM, Wilson WL, Tovar JD, Schroeder CM. Concentration-Driven Assembly and Sol-Gel Transition of π-Conjugated Oligopeptides. ACS CENTRAL SCIENCE 2017; 3:986-994. [PMID: 28979940 PMCID: PMC5620977 DOI: 10.1021/acscentsci.7b00260] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Indexed: 05/26/2023]
Abstract
Advances in supramolecular assembly have enabled the design and synthesis of functional materials with well-defined structures across multiple length scales. Biopolymer-synthetic hybrid materials can assemble into supramolecular structures with a broad range of structural and functional diversity through precisely controlled noncovalent interactions between subunits. Despite recent progress, there is a need to understand the mechanisms underlying the assembly of biohybrid/synthetic molecular building blocks, which ultimately control the emergent properties of hierarchical assemblies. In this work, we study the concentration-driven self-assembly and gelation of π-conjugated synthetic oligopeptides containing different π-conjugated cores (quaterthiophene and perylene diimide) using a combination of particle tracking microrheology, confocal fluorescence microscopy, optical spectroscopy, and electron microscopy. Our results show that π-conjugated oligopeptides self-assemble into β-sheet-rich fiber-like structures at neutral pH, even in the absence of electrostatic screening of charged residues. A critical fiber formation concentration cfiber and a critical gel concentration cgel are determined for fiber-forming π-conjugated oligopeptides, and the linear viscoelastic moduli (storage modulus G' and loss modulus G″) are determined across a wide range of peptide concentrations. These results suggest that the underlying chemical structure of the synthetic π-conjugated cores greatly influences the self-assembly process, such that oligopeptides appended to π-conjugated cores with greater torsional flexibility tend to form more robust fibers upon increasing peptide concentration compared to oligopeptides with sterically constrained cores. Overall, our work focuses on the molecular assembly of π-conjugated oligopeptides driven by concentration, which is controlled by a combination of enthalpic and entropic interactions between oligopeptide subunits.
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Affiliation(s)
- Yuecheng Zhou
- Department of Materials Science and Engineering, Department of Chemical and Biomolecular
Engineering, and Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Bo Li
- Department of Materials Science and Engineering, Department of Chemical and Biomolecular
Engineering, and Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Songsong Li
- Department of Materials Science and Engineering, Department of Chemical and Biomolecular
Engineering, and Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Herdeline Ann M. Ardoña
- Department
of Chemistry and Department of Materials Science and Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - William L. Wilson
- Department of Materials Science and Engineering, Department of Chemical and Biomolecular
Engineering, and Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Center
for Nanoscale Systems, Faculty of Arts and Sciences, Harvard University, Cambridge, Massachusetts 02138, United States
| | - John D. Tovar
- Department
of Chemistry and Department of Materials Science and Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Charles M. Schroeder
- Department of Materials Science and Engineering, Department of Chemical and Biomolecular
Engineering, and Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
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30
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Ardoña HAM, Kale TS, Ertel A, Tovar JD. Nonresonant and Local Field Effects in Peptidic Nanostructures Bearing Oligo(p-phenylenevinylene) Units. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:7435-7445. [PMID: 28683194 DOI: 10.1021/acs.langmuir.7b01023] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Peptide nanostructures with built-in electronic functions offer a new platform for biomaterial science. In this report, we interrogate the influences of the immediate peptide environment around oligo(p-phenylenevinylene) (OPV3) electronic units embedded within one-dimensional peptide nanostructures on the resulting photophysics as assessed by UV-vis, photoluminescence (PL), and circular dichroism spectroscopies. To do so, we studied peptide-core-peptide molecules where the core was either OPV3 or an aliphatic n-decyl chain. Coassemblies of these molecules wherein the π-core was diluted as a minority component within a majority aliphatic matrix allowed for the variation of interchromophore exciton coupling commonly found in homoassemblies of peptide-OPV3-peptide monomers. Upon coassembly of the peptides, a hydrophilic tripeptide sequence (Asp-Asp-Asp-, DDD-) promoted the dilution/isolation of the peptide-π-peptide molecules in the majority peptide-decyl-peptide matrix whereas a hydrophobic tripeptide sequence (Asp-Val-Val-, DVV-) promoted the formation of self-associated stacks within the nanostructures. We also performed temperature variation studies to induce the reorganization of π-electron units in the spatially constrained n-decyl environment. This study elucidates the nonresonant (e.g., conformational) and local peptide field effects enforced within the internal environment of peptide nanomaterials and how they lead to varied photophysical properties of the embedded π-electron cores. It offers new insights on tuning the optoelectronic properties of these types of materials on the basis of the local electronic and steric environment available within the nanostructures.
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Affiliation(s)
- Herdeline Ann M Ardoña
- Department of Chemistry, Krieger School of Arts and Sciences, ‡Institute for NanoBioTechnology, and §Department of Materials Science and Engineering, Whiting School of Engineering, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - Tejaswini S Kale
- Department of Chemistry, Krieger School of Arts and Sciences, ‡Institute for NanoBioTechnology, and §Department of Materials Science and Engineering, Whiting School of Engineering, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - Alyssa Ertel
- Department of Chemistry, Krieger School of Arts and Sciences, ‡Institute for NanoBioTechnology, and §Department of Materials Science and Engineering, Whiting School of Engineering, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - John D Tovar
- Department of Chemistry, Krieger School of Arts and Sciences, ‡Institute for NanoBioTechnology, and §Department of Materials Science and Engineering, Whiting School of Engineering, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218, United States
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31
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Kale TS, Marine JE, Tovar JD. Self-Assembly and Associated Photophysics of Dendron-Appended Peptide-π-Peptide Triblock Macromolecules. Macromolecules 2017. [DOI: 10.1021/acs.macromol.7b00821] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
| | - Jeannette E. Marine
- Department
of Chemistry, Stony Brook University, Stony Brook, New York 11794-3400, United States
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32
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Wang J, Gayatri MA, Ferguson AL. Mesoscale Simulation and Machine Learning of Asphaltene Aggregation Phase Behavior and Molecular Assembly Landscapes. J Phys Chem B 2017; 121:4923-4944. [DOI: 10.1021/acs.jpcb.7b02574] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Jiang Wang
- Department
of Physics, University of Illinois Urbana−Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States
| | - Mohit A. Gayatri
- Department
of Chemical and Biomolecular Engineering, University of Illinois Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Andrew L. Ferguson
- Department
of Chemical and Biomolecular Engineering, University of Illinois Urbana−Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
- Department
of Materials Science and Engineering, University of Illinois Urbana−Champaign, 1304 West Green Street, Urbana, Illinois 61801, United States
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33
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Sanders A, Kale TS, Katz HE, Tovar JD. Solid-Phase Synthesis of Self-Assembling Multivalent π-Conjugated Peptides. ACS OMEGA 2017; 2:409-419. [PMID: 31457447 PMCID: PMC6640940 DOI: 10.1021/acsomega.6b00414] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 01/24/2017] [Indexed: 05/24/2023]
Abstract
We present a completely solid-phase synthetic strategy to create three- and four-fold peptide-appended π-electron molecules, where the multivalent oligopeptide presentation is dictated by the symmetries of reactive handles placed on discotic π-conjugated cores. Carboxylic acid and anhydride groups were viable amidation and imidation partners, respectively, and oligomeric π-electron discotic cores were prepared through Pd-catalyzed cross-couplings. Due to intermolecular hydrogen bonding between the three or four peptide axes, these π-peptide hybrids self-assemble into robust one-dimensional nanostructures with high aspect ratios in aqueous solution. The preparation of these systems via solid-phase methods will be detailed along with their self-assembly properties, as revealed by steady-state spectroscopy and transmission electron microscopy and electrical characterization using field-effect transistor measurements.
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Affiliation(s)
- Allix
M. Sanders
- Department
of Chemistry, Krieger School of Arts and Sciences, Department of Materials
Science and Engineering, Whiting School of Engineering, Institute of NanoBioTechnology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - Tejaswini S. Kale
- Department
of Chemistry, Krieger School of Arts and Sciences, Department of Materials
Science and Engineering, Whiting School of Engineering, Institute of NanoBioTechnology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - Howard E. Katz
- Department
of Chemistry, Krieger School of Arts and Sciences, Department of Materials
Science and Engineering, Whiting School of Engineering, Institute of NanoBioTechnology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - John D. Tovar
- Department
of Chemistry, Krieger School of Arts and Sciences, Department of Materials
Science and Engineering, Whiting School of Engineering, Institute of NanoBioTechnology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
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34
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Mansbach RA, Ferguson AL. Coarse-Grained Molecular Simulation of the Hierarchical Self-Assembly of π-Conjugated Optoelectronic Peptides. J Phys Chem B 2017; 121:1684-1706. [DOI: 10.1021/acs.jpcb.6b10165] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Rachael A. Mansbach
- Department
of Physics, University of Illinois at Urbana-Champaign, 1110 W Green Street, Urbana, Illinois 61801, United States
| | - Andrew L. Ferguson
- Department
of Materials Science and Engineering, University of Illinois at Urbana-Champaign, 1304 W Green Street, Urbana, Illinois 61801, United States
- Department
of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, United States
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35
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Li B, Li S, Zhou Y, Ardoña HAM, Valverde LR, Wilson WL, Tovar JD, Schroeder CM. Nonequilibrium Self-Assembly of π-Conjugated Oligopeptides in Solution. ACS APPLIED MATERIALS & INTERFACES 2017; 9:3977-3984. [PMID: 28067038 DOI: 10.1021/acsami.6b15068] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Supramolecular assembly is a powerful method that can be used to generate materials with well-defined structures across multiple length scales. Supramolecular assemblies consisting of biopolymer-synthetic polymer subunits are specifically known to exhibit exceptional structural and functional diversity as well as programmable control of noncovalent interactions through hydrogen bonding in biopolymer subunits. Despite recent progress, there is a need to control and quantitatively understand assembly under nonequilibrium conditions. In this work, we study the nonequilibrium self-assembly of π-conjugated synthetic oligopeptides using a combination of experiments and analytical modeling. By isolating an aqueous peptide solution droplet within an immiscible organic layer, the rate of peptide assembly in the aqueous solution can be controlled by tuning the transport rate of acid that is used to trigger assembly. Using this approach, peptides are guided to assemble under reaction-dominated and diffusion-dominated conditions, with results showing a transition from a diffusion-limited reaction front to spatially homogeneous assembly as the transport rate of acid decreases. Interestingly, our results show that the morphology of self-assembled peptide fibers is controlled by the assembly kinetics such that increasingly homogeneous structures of self-assembled synthetic oligopeptides were generally obtained using slower rates of assembly. We further developed an analytical reaction-diffusion model to describe oligopeptide assembly, and experimental results are compared to the reaction-diffusion model across a range of parameters. Overall, this work highlights the importance of molecular self-assembly under nonequilibrium conditions, specifically showing that oligopeptide assembly is governed by a delicate balance between reaction kinetics and transport processes.
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Affiliation(s)
- Bo Li
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States
| | - Songsong Li
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign , Urbana, Illinois 61820, United States
| | - Yuecheng Zhou
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign , Urbana, Illinois 61820, United States
| | - Herdeline Ann M Ardoña
- Department of Chemistry, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Lawrence R Valverde
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign , Urbana, Illinois 61820, United States
| | - William L Wilson
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign , Urbana, Illinois 61820, United States
- Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States
- Center for Nanoscale Systems, Faculty of Arts and Sciences, Harvard University , Cambridge, Massachusetts 02138, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University , Baltimore, Maryland 21218, United States
- Department of Materials Science and Engineering, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Charles M Schroeder
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign , Urbana, Illinois 61820, United States
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36
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Mansbach RA, Ferguson AL. Control of the hierarchical assembly of π-conjugated optoelectronic peptides by pH and flow. Org Biomol Chem 2017; 15:5484-5502. [DOI: 10.1039/c7ob00923b] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Coarse-grained molecular simulations reveal the influence of pH and flow on the self-assembly of DFAG-OPV3-GAFD optoelectronic peptides.
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Affiliation(s)
| | - Andrew L. Ferguson
- Department of Materials Science and Engineering
- University of Illinois at Urbana-Champaign
- Urbana
- USA
- Department of Chemical and Biomolecular Engineering
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37
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Kale TS, Tovar JD. Regulation of peptide-π-peptide nanostructure bundling: the impact of ‘cruciform’ π-electron segments. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.07.064] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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38
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Singh N, Kumar M, Miravet JF, Ulijn RV, Escuder B. Peptide-Based Molecular Hydrogels as Supramolecular Protein Mimics. Chemistry 2016; 23:981-993. [PMID: 27530095 DOI: 10.1002/chem.201602624] [Citation(s) in RCA: 128] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Indexed: 12/14/2022]
Abstract
This Minireview concerns recent advances in the design, synthesis, and application of low molecular-weight peptidic hydrogelators. The sequence-specific combinations of amino acid side chain functionalities combined with hydrogen bonding of amide backbones and hydrophobic (aromatic) capping groups give these peptidic molecules the intrinsic tendency to self-assemble. The most prevalent designs include N-capped amino acid residues, bolamphiphilic peptides, and amphipathic peptides. Factors such as hydrophobic effects, the Hofmeister effect, and tunable ionization influence their aggregation properties. The self-assembly of simple bio-inspired building blocks into higher organized structures allows comparisons to be drawn with proteins and their complex functionalities, providing preliminary insights into complex biological functions and also enabling their application in a wide range of fields including catalysis, biomedical applications, and mimicry of natural dissipative systems. The Minireview is concluded by a short summary and outlook, highlighting the advances and steps required to bridge the gaps in the understanding of such systems.
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Affiliation(s)
- Nishant Singh
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I, Av. Sos Baynat, s/n, 12071, Castelló, Spain
| | - Mohit Kumar
- Advanced Science Research Centre (ASRC), City University of New York, 85 St Nicholas Terrace, New York, NY, 10031, USA
| | - Juan F Miravet
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I, Av. Sos Baynat, s/n, 12071, Castelló, Spain
| | - Rein V Ulijn
- Advanced Science Research Centre (ASRC), City University of New York, 85 St Nicholas Terrace, New York, NY, 10031, USA.,WestCHEM/Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, UK.,Department of Chemistry and Biochemistry, City University of New York-Hunter College, 695 Park Ave., New York, NY, 10065, USA.,PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA
| | - Beatriu Escuder
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I, Av. Sos Baynat, s/n, 12071, Castelló, Spain
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39
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Basak S, Nandi N, Bhattacharyya K, Datta A, Banerjee A. Fluorescence from an H-aggregated naphthalenediimide based peptide: photophysical and computational investigation of this rare phenomenon. Phys Chem Chem Phys 2016; 17:30398-403. [PMID: 26508537 DOI: 10.1039/c5cp05236j] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Fluorescence associated with J-aggregated naphthalenediimides (NDIs) is common. However, in this study an NDI based synthetic peptide molecule is found to form a fluorescent H-aggregate in a chloroform (CHCl3)-methylcyclohexane (MCH) mixture. An attempt has been made to explain the unusual fluorescence property of this H-aggregated NDI derivative. Time correlated single photon counting (TCSPC) shows that the average lifetime of the NDI based molecule is on the order of a few nanoseconds. It is revealed from the computational study that the transition from the second exited state (S2) to the ground energy state (S0) is responsible for the fluorescence as S1 is a dark state. Such rare violation of Kasha's rule accounts for the unusual fluorescence properties of this type of NDI molecule in the H-aggregated state.
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Affiliation(s)
- Shibaji Basak
- Department of Biological Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata - 700 032, India.
| | - Nibedita Nandi
- Department of Biological Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata - 700 032, India.
| | - Kalishankar Bhattacharyya
- Department of Spectroscopy, Indian Association for the Cultivation of Science, Jadavpur, Kolkata - 700 032, India.
| | - Ayan Datta
- Department of Spectroscopy, Indian Association for the Cultivation of Science, Jadavpur, Kolkata - 700 032, India.
| | - Arindam Banerjee
- Department of Biological Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata - 700 032, India.
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40
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Tao K, Jacoby G, Burlaka L, Beck R, Gazit E. Design of Controllable Bio-Inspired Chiroptic Self-Assemblies. Biomacromolecules 2016; 17:2937-45. [DOI: 10.1021/acs.biomac.6b00752] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
| | | | - Luba Burlaka
- Institute
for Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan, 5290002, Israel
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41
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Thurston BA, Tovar JD, Ferguson AL. Thermodynamics, morphology, and kinetics of early-stage self-assembly of π-conjugated oligopeptides. MOLECULAR SIMULATION 2016. [DOI: 10.1080/08927022.2015.1125997] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Bryce A. Thurston
- Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - John D. Tovar
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, USA
- Institute of NanoBioTechnology, Johns Hopkins University, Baltimore, MD, USA
- Department of Materials Science and Engineering, Johns Hopkins University, Baltimore, MD, USA
| | - Andrew L. Ferguson
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
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42
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Sanders AM, Magnanelli TJ, Bragg AE, Tovar JD. Photoinduced Electron Transfer within Supramolecular Donor–Acceptor Peptide Nanostructures under Aqueous Conditions. J Am Chem Soc 2016; 138:3362-70. [DOI: 10.1021/jacs.5b12001] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Allix M. Sanders
- Department
of Chemistry, Krieger School of Arts and Sciences, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Timothy J. Magnanelli
- Department
of Chemistry, Krieger School of Arts and Sciences, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Arthur E. Bragg
- Department
of Chemistry, Krieger School of Arts and Sciences, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - John D. Tovar
- Department
of Chemistry, Krieger School of Arts and Sciences, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
- Department
of Materials Science and Engineering, Whiting School of Engineering, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
- Institute
of NanoBioTechnology, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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43
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Krieg E, Bastings MMC, Besenius P, Rybtchinski B. Supramolecular Polymers in Aqueous Media. Chem Rev 2016; 116:2414-77. [DOI: 10.1021/acs.chemrev.5b00369] [Citation(s) in RCA: 527] [Impact Index Per Article: 65.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
| | | | - Pol Besenius
- Institute
of Organic Chemistry, Johannes Gutenberg-Universität Mainz, Mainz 55128, Germany
| | - Boris Rybtchinski
- Department
of Organic Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel
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44
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Besar K, Ardoña HAM, Tovar JD, Katz HE. Demonstration of Hole Transport and Voltage Equilibration in Self-Assembled π-Conjugated Peptide Nanostructures Using Field-Effect Transistor Architectures. ACS NANO 2015; 9:12401-12409. [PMID: 26554697 DOI: 10.1021/acsnano.5b05752] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
π-Conjugated peptide materials are attractive for bioelectronics due to their unique photophysical characteristics, biofunctional interfaces, and processability under aqueous conditions. In order to be relevant for electrical applications, these types of materials must be able to support the passage of current and the transmission of applied voltages. Presented herein is an investigation of both the current and voltage transmission activities of one-dimensional π-conjugated peptide nanostructures. Observations of the nanostructures as both semiconducting and gate layers in organic field-effect transistors (OFETs) were made, and the effect of systematic changes in amino acid composition on the semiconducting/conducting functionality of the nanostructures was investigated. These molecular variations directly impacted the hole mobility values observed for the nanomaterial active layers over 3 orders of magnitude (∼0.02 to 5 × 10(-5) cm(2) V(-1) s(-1)) when the nanostructures had quaterthiophene cores and the assembled peptide materials spanned source and drain electrodes. Peptides without the quaterthiophene core were used as controls and did not show field-effect currents, verifying that the transport properties of the nanostructures rely on the semiconducting behavior of the π-electron core and not just ionic rearrangements. We also showed that the nanomaterials could act as gate electrodes and assessed the effect of varying the gate dielectric layer thickness in devices where the conventional organic semiconductor pentacene spanned the source and drain electrodes in a top-contact OFET, showing an optimum performance with 35-40 nm dielectric thickness. This study shows that these peptides that self-assemble in aqueous environments can be used successfully to transmit electronic signals over biologically relevant distances.
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Affiliation(s)
- Kalpana Besar
- Department of Materials Science and Engineering, Whiting School of Engineering, ‡Department of Chemistry, Krieger School of Arts and Sciences, and §Institute of NanoBioTechnology, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218 United States
| | - Herdeline Ann M Ardoña
- Department of Materials Science and Engineering, Whiting School of Engineering, ‡Department of Chemistry, Krieger School of Arts and Sciences, and §Institute of NanoBioTechnology, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218 United States
| | - John D Tovar
- Department of Materials Science and Engineering, Whiting School of Engineering, ‡Department of Chemistry, Krieger School of Arts and Sciences, and §Institute of NanoBioTechnology, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218 United States
| | - Howard E Katz
- Department of Materials Science and Engineering, Whiting School of Engineering, ‡Department of Chemistry, Krieger School of Arts and Sciences, and §Institute of NanoBioTechnology, Johns Hopkins University , 3400 N. Charles Street, Baltimore, Maryland 21218 United States
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45
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Berdugo C, Nalluri SKM, Javid N, Escuder B, Miravet JF, Ulijn RV. Dynamic Peptide Library for the Discovery of Charge Transfer Hydrogels. ACS APPLIED MATERIALS & INTERFACES 2015; 7:25946-54. [PMID: 26540455 DOI: 10.1021/acsami.5b08968] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Coupling of peptide self-assembly to dynamic sequence exchange provides a useful approach for the discovery of self-assembling materials. In here, we demonstrate the discovery and optimization of aqueous, gel-phase nanostructures based on dynamically exchanging peptide sequences that self-select to maximize charge transfer of n-type semiconducting naphthalenediimide (NDI)-dipeptide bioconjugates with various π-electron-rich donors (dialkoxy/hydroxy/amino-naphthalene or pyrene derivatives). These gel-phase peptide libraries are characterized by spectroscopy (UV-vis and fluorescence), microscopy (TEM), HPLC, and oscillatory rheology and it is found that, of the various peptide sequences explored (tyrosine Y-NDI with tyrosine Y, phenylalanine F, leucine L, valine V, alanine A or glycine G-NH2), the optimum sequence is tyrosine-phenylalanine in each case; however, both its absolute and relative yield amplification is dictated by the properties of the donor component, indicating cooperativity of peptide sequence and donor/acceptor pairs in assembly. The methodology provides an in situ discovery tool for nanostructures that enable dynamic interfacing of supramolecular electronics with aqueous (biological) systems.
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Affiliation(s)
- Cristina Berdugo
- WestCHEM/Department of Pure and Applied Chemistry, University of Strathclyde , Thomas Graham Building, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I , Avda. Sos Baynat s/n, 12071 Castelló, Spain
| | - Siva Krishna Mohan Nalluri
- WestCHEM/Department of Pure and Applied Chemistry, University of Strathclyde , Thomas Graham Building, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
| | - Nadeem Javid
- WestCHEM/Department of Pure and Applied Chemistry, University of Strathclyde , Thomas Graham Building, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
| | - Beatriu Escuder
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I , Avda. Sos Baynat s/n, 12071 Castelló, Spain
| | - Juan F Miravet
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I , Avda. Sos Baynat s/n, 12071 Castelló, Spain
| | - Rein V Ulijn
- WestCHEM/Department of Pure and Applied Chemistry, University of Strathclyde , Thomas Graham Building, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
- Advanced Science Research Center (ASRC) and Hunter College, City University of New York (CUNY) , 85 St Nicholas Terrace, New York, New York 10031, United States
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46
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Ardoña HAM, Tovar JD. Peptide π-Electron Conjugates: Organic Electronics for Biology? Bioconjug Chem 2015; 26:2290-302. [DOI: 10.1021/acs.bioconjchem.5b00497] [Citation(s) in RCA: 94] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Herdeline Ann M. Ardoña
- Department of Chemistry, ‡Institute for NanoBioTechnology, and §Department of Materials
Science and
Engineering, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218 United States
| | - John D. Tovar
- Department of Chemistry, ‡Institute for NanoBioTechnology, and §Department of Materials
Science and
Engineering, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218 United States
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47
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Kartha KK, Praveen VK, Babu SS, Cherumukkil S, Ajayaghosh A. Pyridyl-Amides as a Multimode Self-Assembly Driver for the Design of a Stimuli-Responsive π-Gelator. Chem Asian J 2015; 10:2250-6. [DOI: 10.1002/asia.201500331] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Indexed: 12/30/2022]
Affiliation(s)
- Kalathil K. Kartha
- Photosciences and Photonics Group, Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST); Trivandrum 695 019 Kerala India
| | - Vakayil K. Praveen
- Photosciences and Photonics Group, Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST); Trivandrum 695 019 Kerala India
| | - Sukumaran Santhosh Babu
- Photosciences and Photonics Group, Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST); Trivandrum 695 019 Kerala India
| | - Sandeep Cherumukkil
- Photosciences and Photonics Group, Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST); Trivandrum 695 019 Kerala India
- Academy of Scientific and Innovative Research (AcSIR); CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST); Trivandrum 695 019 Kerala India
| | - Ayyappanpillai Ajayaghosh
- Photosciences and Photonics Group, Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST); Trivandrum 695 019 Kerala India
- Academy of Scientific and Innovative Research (AcSIR); CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST); Trivandrum 695 019 Kerala India
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48
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Tovar JD. Peptide Nanostructures with π-Ways: Photophysical Consequences of Peptide/π-Electron Molecular Self-Assembly. Isr J Chem 2015. [DOI: 10.1002/ijch.201400161] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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49
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Ardoña HAM, Tovar JD. Energy transfer within responsive pi-conjugated coassembled peptide-based nanostructures in aqueous environments. Chem Sci 2015; 6:1474-1484. [PMID: 29560236 PMCID: PMC5811113 DOI: 10.1039/c4sc03122a] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2014] [Accepted: 11/30/2014] [Indexed: 01/26/2023] Open
Abstract
Steady-state and time-resolved photophysical measurements demonstrate energy transfer within π-conjugated peptide nanostructures composed of oligo-(p-phenylenevinylene)-based donor units and quaterthiophene-based acceptor units in completely aqueous environments. These peptide-based assemblies encourage energy migration along the stacking axis, thus resulting in the quenching of donor emission peaks along with the development of new spectral features reminiscent of acceptor emission. These spectral changes were observed even at minute amounts of the acceptor (starting at 1 mol%), suggesting that exciton migration is involved in energy transport and supporting a funnel-like energy transduction mechanism. The reversibility of nanostructure formation and the associated photophysical responses under different conditions (pH, temperature) were also studied. This unique material design incorporates two different semiconducting units coassembled within peptide nanostructures and offers a new platform for the engineering of energy migration through bioelectronic materials in aqueous environments.
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Affiliation(s)
- Herdeline Ann M Ardoña
- Department of Chemistry , Krieger School of Arts and Sciences , Johns Hopkins University , 3400 N. Charles St. , Baltimore , MD 21218 , USA
- Institute for NanoBioTechnology , Johns Hopkins University , 3400 N. Charles St. , Baltimore , MD 21218 , USA
| | - John D Tovar
- Department of Chemistry , Krieger School of Arts and Sciences , Johns Hopkins University , 3400 N. Charles St. , Baltimore , MD 21218 , USA
- Institute for NanoBioTechnology , Johns Hopkins University , 3400 N. Charles St. , Baltimore , MD 21218 , USA
- Department of Materials Science and Engineering , Whiting School of Engineering , Johns Hopkins University , 3400 N. Charles St. , Baltimore , MD 21218 , USA . ; http://pages.jh.edu/chem/tovar ; Tel: +1 410 5166065
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50
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Bou Zerdan R, Cohn P, Puodziukynaite E, Baker MB, Voisin M, Sarun C, Castellano RK. Synthesis, optical properties, and electronic structures of nucleobase-containing π-conjugated oligomers. J Org Chem 2015; 80:1828-40. [PMID: 25581330 DOI: 10.1021/jo502773g] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The molecular recognition properties of the nucleobases instruct the formation of complex three-dimensional architectures in natural and synthetic systems; relatively unexplored is their use as building blocks for π-conjugated materials where they might mutually tune electronic and supramolecular structures. Toward this goal, an introductory set (1a-d and 2a-d) of six purine-terminated and two pyrimidine-terminated π-conjugated oligomers has been synthesized and used to develop experimental electronic and photophysical structure-property trends. Unlike 2,2':5',2″-terthiophene (TTT) derivatives 2a-d, intramolecular charge transfer dominates oligomers 1a-d bearing a 4,7-bisthienylbenzothiadiazole (TBT) spacer due to the strong electron-accepting ability of its benzothiadiazole (BTD) ring. The resulting donor-acceptor-donor systems feature lower HOMO-LUMO gaps than the terthiophene-linked nucleobases (ΔE(g) ∼ 1.8 eV vs 2.4 eV based on electrochemical measurements), and the lowest so far for π-conjugated molecules that include nucleobases within the π-framework. Experiments reveal a dependence of photophysical and electronic structure on the nature of the nucleobase and are in good agreement with theoretical calculations performed at the B3LYP/6-31+G** level. Overall, the results show how nucleobase heterocycles can be installed within π-systems to tune optical and electronic properties. Future work will evaluate the consequences of these information-rich components on supramolecular π-conjugated structure.
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Affiliation(s)
- Raghida Bou Zerdan
- Department of Chemistry, University of Florida , P.O. Box 117200, Gainesville, Florida 32611, United States
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