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Wang Y, Lan H, Yang Y, Man Q, Liu Y, Han J, Guan W, Wang Y, Wang L. Fabricating Polymeric Micelles with Enrichment and Cavity Effect for In Situ Enzyme Imobilization from Natural Biosystems. Biomacromolecules 2024; 25:5873-5888. [PMID: 39177359 DOI: 10.1021/acs.biomac.4c00557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2024]
Abstract
Metal-organic frameworks and hydrogen-organic frameworks (MOFs and HOFs) are attractive hosts for enzyme immobilization, but they are limited to immobilizing the purified enzymes, making industrial upscaling unattractive. Herein, aptamer-modified dual thermoresponsive polymeric micelles with switchable self-assembly and core-shell structure are constructed, which enable selective immobilization of trypsin directly from complex biological systems through a cascade operation of separation and immobilization. Their steric self-assembly provides a large amount of adsorption sites on the soluble micellar shell, resulting in high adsorption capacity and excellent selectivity. Meanwhile, their aptamer affinity ligand and cavity maintain the native conformations of trypsin and offer protective effects even in harsh conditions. The maximum adsorption capacity of the polymeric micelles for trypsin was determined to be 197 mg/g at 60 min, superior to those of MOFs and HOFs. 67.2 and 86.6% of its original activity was retained for trypsin immobilized in the cavity under strong alkaline and acidic conditions, respectively.
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Affiliation(s)
- Yuanyuan Wang
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Huiling Lan
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Yulin Yang
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Qing Man
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Yuanyuan Liu
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Juan Han
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Weimin Guan
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Yun Wang
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Lei Wang
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
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Baruah A, Newar R, Das S, Kalita N, Nath M, Ghosh P, Chinnam S, Sarma H, Narayan M. Biomedical applications of graphene-based nanomaterials: recent progress, challenges, and prospects in highly sensitive biosensors. DISCOVER NANO 2024; 19:103. [PMID: 38884869 PMCID: PMC11183028 DOI: 10.1186/s11671-024-04032-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 05/14/2024] [Indexed: 06/18/2024]
Abstract
Graphene-based nanomaterials (graphene, graphene oxide, reduced graphene oxide, graphene quantum dots, graphene-based nanocomposites, etc.) are emerging as an extremely important class of nanomaterials primarily because of their unique and advantageous physical, chemical, biological, and optoelectronic aspects. These features have resulted in uses across diverse areas of scientific research. Among all other applications, they are found to be particularly useful in designing highly sensitive biosensors. Numerous studies have established their efficacy in sensing pathogens and other biomolecules allowing for the rapid diagnosis of various diseases. Considering the growing importance and popularity of graphene-based materials for biosensing applications, this review aims to provide the readers with a summary of the recent progress in the concerned domain and highlights the challenges associated with the synthesis and application of these multifunctional materials.
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Affiliation(s)
- Arabinda Baruah
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Rachita Newar
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Saikat Das
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Nitul Kalita
- Indian Institute of Technology Guwahati, Guwahati, Assam, 781039, India
| | - Masood Nath
- University of Technology and Applied Sciences, Muscat, Oman
| | - Priya Ghosh
- Department of Chemistry, Gauhati University, Guwahati, Assam, 781014, India
| | - Sampath Chinnam
- Department of Chemistry, M.S. Ramaiah Institute of Technology (Autonomous Institution, Affiliated to Visvesvaraya Technological University, Belgaum), Bengaluru, Karnataka, 560054, India
| | - Hemen Sarma
- Department of Botany, Bodoland University, Rangalikhata, Deborgaon, Kokrajhar (BTR), Assam, 783370, India.
| | - Mahesh Narayan
- Department of Chemistry and Biochemistry, University of Texas at El Paso, UTEP, 500 W. University Ave, El Paso, TX, 79968, USA.
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Mukherjee S, Mukherjee A, Bytesnikova Z, Ashrafi AM, Richtera L, Adam V. 2D graphene-based advanced nanoarchitectonics for electrochemical biosensors: Applications in cancer biomarker detection. Biosens Bioelectron 2024; 250:116050. [PMID: 38301543 DOI: 10.1016/j.bios.2024.116050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 01/01/2024] [Accepted: 01/17/2024] [Indexed: 02/03/2024]
Abstract
Low-cost, rapid, and easy-to-use biosensors for various cancer biomarkers are of utmost importance in detecting cancer biomarkers for early-stage metastasis control and efficient diagnosis. The molecular complexity of cancer biomarkers is overwhelming, thus, the repeatability and reproducibility of measurements by biosensors are critical factors. Electrochemical biosensors are attractive alternatives in cancer diagnosis due to their low cost, simple operation, and promising analytical figures of merit. Recently graphene-derived nanostructures have been used extensively for the fabrication of electrochemical biosensors because of their unique physicochemical properties, including the high electrical conductivity, adsorption capacity, low cost and ease of mass production, presence of oxygen-containing functional groups that facilitate the bioreceptor immobilization, increased flexibility and mechanical strength, low cellular toxicity. Indeed, these properties make them advantageous compared to other alternatives. However, some drawbacks must be overcome to extend their use, such as poor and uncontrollable deposition on the substrate due to the low dispersity of some graphene materials and irreproducibility of the results because of the differences in various batches of the produced graphene materials. This review has documented the most recently developed strategies for electrochemical sensor fabrication. It differs in the categorization method compared to published works to draw greater attention to the wide opportunities of graphene nanomaterials for biological applications. Limitations and future scopes are discussed to advance the integration of novel technologies such as artificial intelligence, the internet of medical things, and triboelectric nanogenerators to eventually increase efficacy and efficiency.
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Affiliation(s)
- Soumajit Mukherjee
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic
| | - Atripan Mukherjee
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic; ELI Beamlines Facility, The Extreme Light Infrastructure ERIC, Za Radnici 835, 252 41, Dolni Breznany, Czech Republic
| | - Zuzana Bytesnikova
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic
| | - Amir M Ashrafi
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic
| | - Lukas Richtera
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic; Central European Institute of Technology, Brno University of Technology, Purkynova 123, CZ-612 00, Brno, Czech Republic
| | - Vojtech Adam
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic.
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Devoy C, Flores Bueso Y, Buckley S, Walker S, Tangney M. Synthetic protein protease sensor platform. Front Bioeng Biotechnol 2024; 12:1347953. [PMID: 38646011 PMCID: PMC11026627 DOI: 10.3389/fbioe.2024.1347953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 02/21/2024] [Indexed: 04/23/2024] Open
Abstract
Introduction: Protease activity can serve as a highly specific biomarker for application in health, biotech, and beyond. The aim of this study was to develop a protease cleavable synthetic protein platform to detect protease activity in a rapid cell-free setting. Methods: The protease sensor is modular, with orthogonal peptide tags at the N and C terminal ends, which can be uncoupled via a protease responsive module located in between. The sensor design allows for several different readouts of cleavage signal. A protein 'backbone' [Green fluorescent protein (GFP)] was designed in silico to have both a C-terminal Flag-tag and N-Terminal 6x histidine tag (HIS) for antibody detection. A protease cleavage site, which can be adapted for any known protease cleavage sequence, enables the uncoupling of the peptide tags. Three different proteases-Tobacco, Etch Virus (TEV), the main protease from coronavirus SARS-COV-2 (Mpro) and Matrix Metallopeptidase 9 (MMP9)-a cancer-selective human protease-were examined. A sandwich Enzyme-Linked Immunosorbent Assay (ELISA) was developed based on antibodies against the HIS and Flag tags. As an alternative readout, a C-terminal quencher peptide separable by protease cleavage from the GFP was also included. Purified proteins were deployed in cell-free cleavage assays with their respective protease. Western blots, fluorescence assays and immunoassay were performed on samples. Results: Following the design, build and validation of protein constructs, specific protease cleavage was initially demonstrated by Western blot. The novel ELISA proved to afford highly sensitive detection of protease activity in all cases. By way of alternative readout, activation of fluorescence signal upon protease cleavage was also demonstrated but did not match the sensitivity provided by the ELISA method. Discussion: This platform, comprising a protease-responsive synthetic protein device and accompanying readout, is suitable for future deployment in a rapid, low-cost, lateral flow setting. The modular protein device can readily accommodate any desired protease-response module (target protease cleavage site). This study validates the concept with three disparate proteases and applications-human infectious disease, cancer and agricultural crop infection.
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Affiliation(s)
- Ciaran Devoy
- Cancer Research@UCC, University College Cork, Cork, Ireland
| | - Yensi Flores Bueso
- Cancer Research@UCC, University College Cork, Cork, Ireland
- APC Microbiome Ireland, University College Cork, Cork, Ireland
| | | | - Sidney Walker
- Cancer Research@UCC, University College Cork, Cork, Ireland
| | - Mark Tangney
- Cancer Research@UCC, University College Cork, Cork, Ireland
- IEd Hub, University College Cork, Cork, Ireland
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Wang C, Zhao H. Polymer Brushes and Surface Nanostructures: Molecular Design, Precise Synthesis, and Self-Assembly. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:2439-2464. [PMID: 38279930 DOI: 10.1021/acs.langmuir.3c02813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2024]
Abstract
For over two decades, polymer brushes have found wide applications in industry and scientific research. Now, polymer brush research has been a significant research focus in the community of polymer science. In this review paper, we give an introduction to the synthesis, self-assembly, and applications of one-dimensional (1D) polymer brushes on polymer backbones, two-dimensional (2D) polymer brushes on flat surfaces, and three-dimensional (3D) polymer brushes on spherical particles. Examples of the synthesis of polymer brushes on different substrates are provided. Studies on the formation of the surface nanostructures on solid surfaces are also reviewed in this article. Multicomponent polymer brushes on solid surfaces are able to self-assemble into surface micelles (s-micelles). If the s-micelles are linked to the substrates through cleavable linkages, the s-micelles can be cleaved from the substrates, and the cleaved s-micelles are able to self-assemble into hierarchical structures. The formation of the surface nanostructures by coassembly of polymer brushes and "free" polymer chains (coassembly approach) or polymerization-induced surface self-assembly approach, is discussed. The applications of the polymer brushes in colloid and biomedical science are summarized. Finally, perspectives on the development of polymer brushes are offered in this article.
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Affiliation(s)
- Chen Wang
- College of Chemistry and Key Laboratory of Functional Polymer Materials of the Ministry of Education, Nankai University, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300071, China
| | - Hanying Zhao
- College of Chemistry and Key Laboratory of Functional Polymer Materials of the Ministry of Education, Nankai University, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300071, China
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Qian X, Zhang H, Zheng M, Li C, Wang J, Huang H, Deng K. A dual-mode strategy based on β-galactosidase and target-induced DNA polymerase protection for transcription factor detection using colorimetry and a glucose meter. Analyst 2023; 148:6078-6086. [PMID: 37909394 DOI: 10.1039/d3an01414b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023]
Abstract
In this work, we report a novel dual-mode method for the highly specific and sensitive detection of transcription factors (TFs) via the integration of Klenow polymerase protection induced by target-specific recognition, cascade-signal amplification using the hybridization chain reaction (HCR) and CRISPR/Cas12a system, and dual-signal transduction mediated by β-galactosidase (β-gal) and two substrates. A dual-mode signal-sensing interface was constructed by immobilizing the oligo DNA probe (P1) tethered β-gal in a 96-well plate. A hairpin H1 with the ability to initiate HCRs was designed to contain the TF binding site. The binding between the TF and H1 protected the H1 from being extended by the Klenow fragment. After thermal denaturation, the reserved H1 launched the HCR and the HCR products activated CRISPR/Cas12a to cleave P1 and reduce the β-gal on the sensing interface, and thus the contents of the TFs and the corresponding signals mediated by the catalysis of β-gal showed a correlation. This work was the first attempt at utilizing β-gal for dual-signal transduction. It is a pioneering study to utilize the HCR-CRISPR/Cas12a system for dual-mode TF sensors. It revealed that DNA polymerase protection through the binding of TF and DNA could be applied as a new pattern to develop TF sensors.
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Affiliation(s)
- Xinmei Qian
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education, Hunan University of Science and Technology, Xiangtan 411201, China.
- Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion, School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, China
| | - Heng Zhang
- Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion, School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, China
| | - Mingyu Zheng
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education, Hunan University of Science and Technology, Xiangtan 411201, China.
| | - Chunxiang Li
- Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion, School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, China
| | - Jinglun Wang
- Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion, School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, China
| | - Haowen Huang
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education, Hunan University of Science and Technology, Xiangtan 411201, China.
| | - Keqin Deng
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education, Hunan University of Science and Technology, Xiangtan 411201, China.
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Al-Sakkaf MK, Basfer I, Iddrisu M, Bahadi SA, Nasser MS, Abussaud B, Drmosh QA, Onaizi SA. An Up-to-Date Review on the Remediation of Dyes and Phenolic Compounds from Wastewaters Using Enzymes Immobilized on Emerging and Nanostructured Materials: Promises and Challenges. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:2152. [PMID: 37570470 PMCID: PMC10420689 DOI: 10.3390/nano13152152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/13/2023] [Accepted: 07/17/2023] [Indexed: 08/13/2023]
Abstract
Addressing the critical issue of water pollution, this review article emphasizes the need to remove hazardous dyes and phenolic compounds from wastewater. These pollutants pose severe risks due to their toxic, mutagenic, and carcinogenic properties. The study explores various techniques for the remediation of organic contaminants from wastewater, including an enzymatic approach. A significant challenge in enzymatic wastewater treatment is the loss of enzyme activity and difficulty in recovery post-treatment. To mitigate these issues, this review examines the strategy of immobilizing enzymes on newly developed nanostructured materials like graphene, carbon nanotubes (CNTs), and metal-organic frameworks (MOFs). These materials offer high surface areas, excellent porosity, and ample anchoring sites for effective enzyme immobilization. The review evaluates recent research on enzyme immobilization on these supports and their applications in biocatalytic nanoparticles. It also analyzes the impact of operational factors (e.g., time, pH, and temperature) on dye and phenolic compound removal from wastewater using these enzymes. Despite promising outcomes, this review acknowledges the challenges for large-scale implementation and offers recommendations for future research to tackle these obstacles. This review concludes by suggesting that enzyme immobilization on these emerging materials could present a sustainable, environmentally friendly solution to the escalating water pollution crisis.
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Affiliation(s)
- Mohammed K. Al-Sakkaf
- Department of Chemical Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Ibrahim Basfer
- Department of Chemical Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Mustapha Iddrisu
- Department of Chemical Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Salem A. Bahadi
- Department of Chemical Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Mustafa S. Nasser
- Gas Processing Center, College of Engineering, Qatar University, Doha 2713, Qatar
| | - Basim Abussaud
- Department of Chemical Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Qasem A. Drmosh
- Department of Materials Science and Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
- Interdisciplinary Research Center for Hydrogen and Energy Storage, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Sagheer A. Onaizi
- Department of Chemical Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
- Interdisciplinary Research Center for Hydrogen and Energy Storage, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
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Tang X, Chen T, Li W, Mao D, Liu C, Wu Q, Huang N, Hu S, Sun F, Pan Q, Zhu X. Throwing and manipulating and cheating with a DNA nano-dice. Nat Commun 2023; 14:2440. [PMID: 37117228 PMCID: PMC10147716 DOI: 10.1038/s41467-023-38164-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 04/18/2023] [Indexed: 04/30/2023] Open
Abstract
Artificial molecular machines have captured the imagination of researchers, given their clear potential to mimic and influence human life. Key to behavior simulation is to reproduce the specific properties of physical or abstract systems. Dice throwing, as a stochastic model, is commonly used for result judgment or plan decision in real life. In this perspective we utilize DNA cube framework for the design of a dice device at the nanoscale to reproduce probabilistic events in different situations: equal probability, high probability, and low probability. We first discuss the randomness of DNA cube, or dice, adsorbing on graphene oxide, or table, and then explore a series of events that change the probability through the way in which the energy released from entropy-driven strand displacement reactions or changes in intermolecular forces. As such, the DNA nano-dice system provides guideline and possibilities for the design, engineering, and quantification of behavioral probability simulation, a currently emerging area of molecular simulation research.
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Affiliation(s)
- Xiaochen Tang
- Department of Clinical Laboratory Medicine, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, P. R. China
- Shanghai Key Laboratory of Clinical Molecular Diagnostics for Pediatrics, Shanghai, 200127, P. R. China
| | - Tianshu Chen
- Department of Clinical Laboratory Medicine, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, P. R. China
- Shanghai Key Laboratory of Clinical Molecular Diagnostics for Pediatrics, Shanghai, 200127, P. R. China
| | - Wenxing Li
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China
| | - Dongsheng Mao
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China
| | - Chenbin Liu
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China
| | - Qi Wu
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China
| | - Nan Huang
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China
| | - Song Hu
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China
| | - Fenyong Sun
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China.
| | - Qiuhui Pan
- Department of Clinical Laboratory Medicine, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, P. R. China.
- Shanghai Key Laboratory of Clinical Molecular Diagnostics for Pediatrics, Shanghai, 200127, P. R. China.
| | - Xiaoli Zhu
- Department of Clinical Laboratory Medicine, Shanghai Tenth People's Hospital of Tongji University, Shanghai, 200072, P. R. China.
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9
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Srivastava N, Singh R, Verma B, Rai AK, Tripathi SC, Bantun F, Faidah H, Singh RP, Jalal NA, Abdel-Razik NE, Haque S. Microbial cellulase production and stability investigations via graphene like carbon nanostructure derived from paddy straw. Int J Biol Macromol 2023; 237:124033. [PMID: 36918076 DOI: 10.1016/j.ijbiomac.2023.124033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 02/05/2023] [Accepted: 03/09/2023] [Indexed: 03/14/2023]
Abstract
Cellulases are among the most in-demand bioprocess enzymes, and the high cost of production, combined with their low enzymatic activity, is the main constraint, particularly in the biofuels industry. As a result, low-cost enzyme production modes with high activity and stability have emerged as the primary focus of research. Here, a method for producing a graphene like carbon nanostructure (GLCNs) has been investigated utilizing paddy straw (Ps), and its physicochemical characteristics have been examined using a variety of techniques including XRD, FT-IR, SEM and TEM. Further, the pretreatment of Ps feedstock for cellulase production was done using diluted waste KOH liquid collected during the preparation of the GLCNs. To increase the production and stability of the enzyme, newly prepared GLCNs is utilized as a nanocatalyst. Using 15 mg of GLCNs, 35 IU/gds FP activity was seen after 72 h, followed by 158 IU/gds EG and 114 IU/gds BGL activity in 96 h. This nanocatalyst supported enzyme was thermally stable at 70 °C up to 15 h and exhibited stability at pH 7.0 for 10 h by holding 66 % of its half-life.
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Affiliation(s)
- Neha Srivastava
- Department of Chemical Engineering & Technology, Indian Institute of Technology (BHU) Varanasi, Varanasi 221005, Uttar Pradesh, India.
| | - Rajeev Singh
- Department of Environmental Science, Jamia Millia Islamia, (A Central University), New Delhi 110025, India
| | - Bhawna Verma
- Department of Chemical Engineering & Technology, Indian Institute of Technology (BHU) Varanasi, Varanasi 221005, Uttar Pradesh, India.
| | - Ashutosh Kumar Rai
- Department of Biochemistry, College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia
| | - Subhash C Tripathi
- Institute of Applied Sciences & Humanities, Department of Chemistry, GLA University, Mathura 281406, Uttar Pradesh, India
| | - Farkad Bantun
- Department of Microbiology, Faculty of Medicine, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Hani Faidah
- Department of Microbiology, Faculty of Medicine, Umm Al-Qura University, Makkah, Saudi Arabia
| | | | - Naif A Jalal
- Department of Microbiology, Faculty of Medicine, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Noha E Abdel-Razik
- Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, Jazan University, Gizan, Saudi Arabia
| | - Shafiul Haque
- Research and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Jazan 45142, Saudi Arabia; Centre of Medical and Bio-Allied Health Sciences Research, Ajman University, Ajman, United Arab Emirates
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10
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Aggarwal S, Ikram S. A comprehensive review on bio-mimicked multimolecular frameworks and supramolecules as scaffolds for enzyme immobilization. Biotechnol Bioeng 2023; 120:352-398. [PMID: 36349456 DOI: 10.1002/bit.28282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Revised: 10/30/2022] [Accepted: 11/05/2022] [Indexed: 11/10/2022]
Abstract
Immobilization depicts a propitious route to optimize the catalytic performances, efficient recovery, minimizing autocatalysis, and also augment the stabilities of enzymes, particularly in unnatural environments. In this opinion, supramolecules and multimolecular frameworks have captivated immense attention to achieve profound controllable interactions between enzyme molecules and well-defined natural or synthetic architectures to yield protein bioconjugates with high accessibility for substrate binding and enhanced enantioselectivities. This scholastic review emphasizes the possibilities of associating multimolecular complexes with biological entities via several types of interactions, namely covalent interactions, host-guest complexation, π - π ${\rm{\pi }}-{\rm{\pi }}$ interactions, intra/inter hydrogen bondings, electrostatic interactions, and so forth offers remarkable applications for the modulations of enzymes. The potential synergies between artificial supramolecular structures and biological systems are the primary concern of this pedagogical review. The majority of the research primarily focused on the dynamic biomolecule-responsive supramolecular assemblages and multimolecular architectures as ideal platforms for the recognition and modulation of proteins and cells. Embracing sustainable green demeanors of enzyme immobilizations in a quest to reinforce site-selectivity, catalytic efficiency, and structural integrality of enzymes are the contemporary requirements of the biotechnological sectors that instigate the development of novel biocatalytic systems.
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Affiliation(s)
- Shalu Aggarwal
- Bio/Polymers Research Laboratory, Department of Chemistry, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi, India
| | - Saiqa Ikram
- Bio/Polymers Research Laboratory, Department of Chemistry, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi, India
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11
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Innovations in the synthesis of graphene nanostructures for bio and gas sensors. BIOMATERIALS ADVANCES 2023; 145:213234. [PMID: 36502548 DOI: 10.1016/j.bioadv.2022.213234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 11/11/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022]
Abstract
Sensors play a significant role in modern technologies and devices used in industries, hospitals, healthcare, nanotechnology, astronomy, and meteorology. Sensors based upon nanostructured materials have gained special attention due to their high sensitivity, precision accuracy, and feasibility. This review discusses the fabrication of graphene-based biosensors and gas sensors, which have highly efficient performance. Significant developments in the synthesis routes to fabricate graphene-based materials with improved structural and surface properties have boosted their utilization in sensing applications. The higher surface area, better conductivity, tunable structure, and atom-thick morphology of these hybrid materials have made them highly desirable for the fabrication of flexible and stable sensors. Many publications have reported various modification approaches to improve the selectivity of these materials. In the current work, a compact and informative review focusing on the most recent developments in graphene-based biosensors and gas sensors has been designed and delivered. The research community has provided a complete critical analysis of the most robust case studies from the latest fabrication routes to the most complex challenges. Some significant ideas and solutions have been proposed to overcome the limitations regarding the field of biosensors and hazardous gas sensors.
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de Souza Freire L, Ruzo CM, Salgado BB, Gandarilla AMD, Romaguera-Barcelay Y, Tavares APM, Sales MGF, Cordeiro I, Lalwani JDB, Matos R, Fonseca Filho H, Astolfi-Filho S, Ţălu Ş, Lalwani P, Brito WR. An Electrochemical Immunosensor Based on Carboxylated Graphene/SPCE for IgG-SARS-CoV-2 Nucleocapsid Determination. BIOSENSORS 2022; 12:bios12121161. [PMID: 36551128 PMCID: PMC9775996 DOI: 10.3390/bios12121161] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 12/01/2022] [Accepted: 12/04/2022] [Indexed: 05/14/2023]
Abstract
The COVID-19 pandemic has emphasized the importance and urgent need for rapid and accurate diagnostic tests for detecting and screening this infection. Our proposal was to develop a biosensor based on an ELISA immunoassay for monitoring antibodies against SARS-CoV-2 in human serum samples. The nucleocapsid protein (N protein) from SARS-CoV-2 was employed as a specific receptor for the detection of SARS-CoV-2 nucleocapsid immunoglobulin G. N protein was immobilized on the surface of a screen-printed carbon electrode (SPCE) modified with carboxylated graphene (CG). The percentage of IgG-SARS-CoV-2 nucleocapsid present was quantified using a secondary antibody labeled with horseradish peroxidase (HRP) (anti-IgG-HRP) catalyzed using 3,3',5,5'-tetramethylbenzidine (TMB) mediator by chronoamperometry. A linear response was obtained in the range of 1:1000-1:200 v/v in phosphate buffer solution (PBS), and the detection limit calculated was 1:4947 v/v. The chronoamperometric method showed electrical signals directly proportional to antibody concentrations due to antigen-antibody (Ag-Ab) specific and stable binding reaction.
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Affiliation(s)
- Luciana de Souza Freire
- Department of Chemistry, Institute of Exact Sciences, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
| | - Camila Macena Ruzo
- Department of Chemistry, Institute of Exact Sciences, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
| | | | - Ariamna María Dip Gandarilla
- Department of Chemistry, Institute of Exact Sciences, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
| | - Yonny Romaguera-Barcelay
- Department of Chemistry, Institute of Exact Sciences, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
- BioMark@UC, Department of Chemical Engineering, Faculty of Sciences and Technology, University of Coimbra, 3030-790 Coimbra, Portugal
| | - Ana P. M. Tavares
- BioMark@UC, Department of Chemical Engineering, Faculty of Sciences and Technology, University of Coimbra, 3030-790 Coimbra, Portugal
| | - Maria Goreti Ferreira Sales
- BioMark@UC, Department of Chemical Engineering, Faculty of Sciences and Technology, University of Coimbra, 3030-790 Coimbra, Portugal
| | - Isabelle Cordeiro
- Department of Physiological Sciences, Institute of Biological Sciences, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
| | | | - Robert Matos
- Amazonian Materials Group, Federal University of Amapá (UNIFAP), Macapá 49100-000, AP, Brazil
| | - Henrique Fonseca Filho
- Laboratory of Nanomaterials Synthesis and Nanoscopy (LSNN), Federal University of Amazonas (UFAM), Manaus 69067-005, AM, Brazil
| | - Spartaco Astolfi-Filho
- Department of Chemistry, Institute of Exact Sciences, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
- PPGBIOTEC, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
| | - Ştefan Ţălu
- The Directorate of Research, Development and Innovation Management (DMCDI), The Technical University of Cluj-Napoca, Constantin Daicoviciu Street, No. 15, 400020 Cluj-Napoca, Romania
| | - Pritesh Lalwani
- Instituto Leônidas e Maria Deane (ILMD), Fiocruz Amazônia, Manaus 69067-005, AM, Brazil
| | - Walter Ricardo Brito
- Department of Chemistry, Institute of Exact Sciences, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
- PPGBIOTEC, Federal University of Amazonas, Manaus 69067-005, AM, Brazil
- Correspondence: ; Tel.: +55-92981379920
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Ultrafast one-minute electronic detection of SARS-CoV-2 infection by 3CL pro enzymatic activity in untreated saliva samples. Nat Commun 2022; 13:6375. [PMID: 36289211 PMCID: PMC9605950 DOI: 10.1038/s41467-022-34074-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 10/12/2022] [Indexed: 12/25/2022] Open
Abstract
Since its onset in December 2019, severe acute respiratory syndrome coronavirus 2, SARS-CoV-2, has caused over 6.5 million deaths worldwide as of October 2022. Attempts to curb viral transmission rely heavily on reliable testing to detect infections since a large number of transmissions are carried through asymptomatic individuals. Many available detection methods fall short in terms of reliability or point-of-care applicability. Here, we report an electrochemical approach targeting a viral proteolytic enzyme, 3CLpro, as a marker of active infection. We detect proteolytic activity directly from untreated saliva within one minute of sample incubation using a reduction-oxidation pH indicator. Importantly, clinical tests of saliva samples from 50 subjects show accurate detection of SARS-CoV-2, with high sensitivity and specificity, validated by PCR testing. These, coupled with our platform's ultrafast detection, simplicity, low cost and point-of-care compatibility, make it a promising method for the real-world SARS-CoV-2 mass-screening.
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14
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Improvement of Lignocellulolytic Enzyme Production Mediated by Calcium Signaling in Bacillus subtilis Z2 under Graphene Oxide Stress. Appl Environ Microbiol 2022; 88:e0096022. [PMID: 36121214 PMCID: PMC9552604 DOI: 10.1128/aem.00960-22] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
An increase in exoenzyme production can be enhanced by environmental stresses such as graphene oxide (GO) stress, but the link between the two events is still unclear. In this work, the effect of GO as an environmental stress factor on exoenzyme (lignocellulolytic enzyme, amylase, peptidase, and protease) biosynthesis was investigated in Bacillus subtilis Z2, and a plausible mechanism by which cytosolic Ca2+ regulates lignocellulolytic enzyme production in B. subtilis Z2 subjected to GO stress was proposed. The filter paper-hydrolyzing (FPase [representing total cellulase]), carboxymethylcellulase (CMCase [representing endoglucanase]), and β-glucosidase activities and extracellular protein concentration of the wild-type strain under 10 μg/mL GO stress were 1.37-, 1.64-, 1.24-, and 1.16-fold those of the control (without GO stress), respectively. Correspondingly, the transcription levels of lignocellulolytic enzyme genes, cytosolic Ca2+ level, and biomass concentration of B. subtilis were all increased. With lignocellulolytic enzyme from B. subtilis used to hydrolyze alkali-pretreated rice straw, the released reducing sugar concentration reached 265.53 mg/g, and the removal rates of cellulose, hemicellulose, and lignin were 52.4%, 30.1%, and 7.5%, respectively. Furthermore, transcriptome data revealed that intracellular Ca2+ homeostasis played a key role in regulating the levels of gene transcription related to the synthesis of lignocellulolytic enzymes and exoenzymes. Finally, the use of Ca2+ inhibitors (LaCl3 and EDTA) and deletion of spcF (a calmodulin-like protein gene) further demonstrated that the overexpression of those genes was regulated via calcium signaling in B. subtilis subjected to GO stress. IMPORTANCE To effectively convert lignocellulose into fermentable sugars, high lignocellulolytic enzyme loading is needed. Graphene oxide (GO) has been shown to promote exoenzyme (lignocellulolytic enzyme, amylase, peptidase, and protease) production in some microorganisms; however, the regulatory mechanism of the biosynthesis of lignocellulolytic enzymes under GO stress remains unclear. In this work, the lignocellulolytic enzyme production of B. subtilis under GO stress was investigated, and the potential mechanism by which B. subtilis enhanced lignocellulolytic enzyme production through the calcium signaling pathway under GO stress was proposed. This work revealed the role of calcium signaling in the production of enzymes under external environmental stress and provided a direction to facilitate lignocellulolytic enzyme production by B. subtilis.
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Srivastava N, Singh R, Kushwaha D, Mokhtar JA, Abujamel TS, Harakeh S, Haque S, Srivastava M, Mishra PK, Gupta VK. Improved biohydrogen production via graphene oxide supported granular system based on algal hydrolyzate, secondary sewage sludge and bacterial consortia. J Biotechnol 2022; 358:41-45. [PMID: 35970360 DOI: 10.1016/j.jbiotec.2022.08.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 06/18/2022] [Accepted: 08/10/2022] [Indexed: 11/19/2022]
Abstract
Biohydrogen production using renewable sources has been regarded as one of the most sustainable ways to develop low-cost and green production technology. In order to achieve this objective, herein biohydrogen production has been conducted using the combination of untreated secondary sewage sludge (Sss), algal biomass hydrolyzate (Abh), graphene oxide (GO) and bacterial consortia that forms a granular system. Thus, naturally formed granular system produced cumulative H2 of 1520mL/L in 168h with the maximum production rate of 13.4mL/L/h in 96h at initial pH 7.0, and optimum temperature of 37oC. It is noticed that the combination of Abh, Sss and GO governed medium showed 42.05% higher cumulative H2 production along with 22.71% higher production rate as compared to Abh and Sss based H2 production medium. The strategy presented herein may find potential applications for the low-cost biohydrogen production using waste biomasses including Sss and Abh.
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Affiliation(s)
- Neha Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Rajeev Singh
- Department of Environmental Studies, Satyawati College, University of Delhi, Delhi 110052, India
| | - Deepika Kushwaha
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Jawahir A Mokhtar
- Department of Medical Microbiology and Parasitology, Faculty of Medicine, King Abdulaziz University Hospital, Jeddah, Saudi Arabia; Vaccines and Immunotherapy Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Turki S Abujamel
- Vaccines and Immunotherapy Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah 21589, Saudi Arabia; Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Steve Harakeh
- King Fahd Medical Research Center, and Yousef Abdullatif Jameel Chair of Prophetic Medicine Application, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Shafiul Haque
- Research and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Jazan 45142, Saudi Arabia
| | - Manish Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India.
| | - P K Mishra
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Vijai Kumar Gupta
- Biorefining and Advanced Materials Research Center, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh EH9 3JG, UK; Center for Safe and Improved Food, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh EH9 3JG, UK.
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16
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Abdelhalim AO, Ageev SV, Petrov AV, Meshcheriakov AA, Luttsev MD, Vasina LV, Nashchekina IA, Murin IV, Molchanov OE, Maistrenko DN, Potanin AA, Semenov KN, Sharoyko VV. Graphene oxide conjugated with doxorubicin: Synthesis, bioactivity, and biosafety. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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17
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Sahin ZM, Kohlan TB, Atespare AE, Yildiz M, Unal S, Dizman B. Polyoxazoline‐modified
graphene oxides with improved water and epoxy resin dispersibility and stability towards composite applications. J Appl Polym Sci 2022. [DOI: 10.1002/app.52406] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Zeynep Munteha Sahin
- Sabanci University Integrated Manufacturing Technologies Center of Excellence Sabanci University Istanbul Turkey
- Composite Technologies Center of Excellence, Istanbul Technology Development Zone Sabanci University‐Kordsa Istanbul Turkey
| | - Taha Behroozi Kohlan
- Sabanci University Integrated Manufacturing Technologies Center of Excellence Sabanci University Istanbul Turkey
- Composite Technologies Center of Excellence, Istanbul Technology Development Zone Sabanci University‐Kordsa Istanbul Turkey
- Faculty of Engineering and Natural Sciences Sabanci University Istanbul Turkey
| | - Asu Ece Atespare
- Sabanci University Integrated Manufacturing Technologies Center of Excellence Sabanci University Istanbul Turkey
- Composite Technologies Center of Excellence, Istanbul Technology Development Zone Sabanci University‐Kordsa Istanbul Turkey
- Faculty of Engineering and Natural Sciences Sabanci University Istanbul Turkey
| | - Mehmet Yildiz
- Sabanci University Integrated Manufacturing Technologies Center of Excellence Sabanci University Istanbul Turkey
- Composite Technologies Center of Excellence, Istanbul Technology Development Zone Sabanci University‐Kordsa Istanbul Turkey
- Faculty of Engineering and Natural Sciences Sabanci University Istanbul Turkey
| | - Serkan Unal
- Sabanci University Integrated Manufacturing Technologies Center of Excellence Sabanci University Istanbul Turkey
- Composite Technologies Center of Excellence, Istanbul Technology Development Zone Sabanci University‐Kordsa Istanbul Turkey
- Faculty of Engineering and Natural Sciences Sabanci University Istanbul Turkey
| | - Bekir Dizman
- Sabanci University Integrated Manufacturing Technologies Center of Excellence Sabanci University Istanbul Turkey
- Composite Technologies Center of Excellence, Istanbul Technology Development Zone Sabanci University‐Kordsa Istanbul Turkey
- Faculty of Engineering and Natural Sciences Sabanci University Istanbul Turkey
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18
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Passaretti P. Graphene Oxide and Biomolecules for the Production of Functional 3D Graphene-Based Materials. Front Mol Biosci 2022; 9:774097. [PMID: 35372519 PMCID: PMC8965154 DOI: 10.3389/fmolb.2022.774097] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 02/14/2022] [Indexed: 12/30/2022] Open
Abstract
Graphene and its derivatives have been widely employed in the manufacturing of novel composite nanomaterials which find applications across the fields of physics, chemistry, engineering and medicine. There are many techniques and strategies employed for the production, functionalization, and assembly of graphene with other organic and inorganic components. These are characterized by advantages and disadvantages related to the nature of the specific components involved. Among many, biomolecules and biopolymers have been extensively studied and employed during the last decade as building blocks, leading to the realization of graphene-based biomaterials owning unique properties and functionalities. In particular, biomolecules like nucleic acids, proteins and enzymes, as well as viruses, are of particular interest due to their natural ability to self-assemble via non-covalent interactions forming extremely complex and dynamic functional structures. The capability of proteins and nucleic acids to bind specific targets with very high selectivity or the ability of enzymes to catalyse specific reactions, make these biomolecules the perfect candidates to be combined with graphenes, and in particular graphene oxide, to create novel 3D nanostructured functional biomaterials. Furthermore, besides the ease of interaction between graphene oxide and biomolecules, the latter can be produced in bulk, favouring the scalability of the resulting nanostructured composite materials. Moreover, due to the presence of biological components, graphene oxide-based biomaterials are more environmentally friendly and can be manufactured more sustainably compared to other graphene-based materials assembled with synthetic and inorganic components. This review aims to provide an overview of the state of the art of 3D graphene-based materials assembled using graphene oxide and biomolecules, for the fabrication of novel functional and scalable materials and devices.
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Affiliation(s)
- Paolo Passaretti
- Institute of Cancer and Genomic Sciences, School of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom
- School of Chemical Engineering, University of Birmingham, Birmingham, United Kingdom
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19
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Srivastava N, Singh R, Srivastava M, Syed A, Bahadur Pal D, Bahkali AH, Mishra PK, Gupta VK. Impact of mixed lignocellulosic substrate and fungal consortia to enhance cellulase production and its application in NiFe 2O 4 nanoparticles mediated enzymatic hydrolysis of wheat straw. BIORESOURCE TECHNOLOGY 2022; 345:126560. [PMID: 34915113 DOI: 10.1016/j.biortech.2021.126560] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 12/07/2021] [Accepted: 12/09/2021] [Indexed: 06/14/2023]
Abstract
Economic biowaste to biofuels production technology suffers from issues including high production cost of cellulase enzyme and its low efficiency. In this study five lignocellulosic biomass based on their high cellulosic contents are employed in 1:1 ratio with mixed fungal consortia to achieve enhance cellulase production via solid state fermentation. Under the optimum condition total 41 IU/gds FP activity was achieved in 120 h at 40 °C and pH 6.0. Further, crude cellulase was evaluated to improve thermal and pH stability under the influence of 2.0 mg/L NiFe2O4 nanoparticles, showed stability at 70 °C and pH 6.0 up to 8 h. Consequently, NiFe2O4 nanoparticles treated cellulase was used for the enzymatic hydrolysis of alkali treated wheat straw, and total 53 g/L reducing sugars could be produced in 18 h at 65 °C and pH 6.0. Thus, nanoparticles mediated enzymatic hydrolysis exhibited ∼ 29% and ∼ 28% higher sugar yield and productivity as compared to control after 18 h.
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Affiliation(s)
- Neha Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Rajeev Singh
- Department of Environmental Studies, Satyawati College, University of Delhi, Delhi 110052, India
| | - Manish Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Asad Syed
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh 11451, Saudi Arabia
| | - Dan Bahadur Pal
- Department of Chemical Engineering, Birla Institute of Technology, Mesra, Ranchi 835215, Jharkhand, India
| | - Ali H Bahkali
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh 11451, Saudi Arabia
| | - P K Mishra
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Vijai Kumar Gupta
- Biorefiningand Advanced Materials Research Center, SRUC, Kings Buildings, West Mains Road, Edinburgh EH9 3JG, UK; Centerfor Safe and Improved Food, SRUC, Kings Buildings, West Mains Road, Edinburgh EH9 3JG, UK.
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20
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Malhotra M, Kalluri A, Kumar CV. Nanoarmored Multi-Enzyme Cascade Catalysis. Methods Mol Biol 2022; 2487:205-225. [PMID: 35687239 DOI: 10.1007/978-1-0716-2269-8_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
This chapter reports a single-step preparation of nanoarmored bi-enzyme systems assembled on 1-D and 2-D nanomaterials, with glucose oxidase and peroxidase enzymes as model systems for cascade bio-catalysis. This is a simple and facile method to both exfoliate the bulk 1D (carbon nanotubes, CNT) and 2D nanomaterials (α-Zirconium phosphate, α-ZrP) and bind the enzymes in a single step. Exfoliation of the bulk material enhances the accessible surface area of the materials for the enzyme binding, and it also boosts the diffusion of reagents from the bulk phase to the active sites of the bio-catalysts. For example, a mixture of horseradish peroxidase, glucose oxidase, and bovine serum albumin (BSA) were adsorbed on the surfaces of the α-ZrP nanoplates or carbon nanotubes (CNT) as the bulk materials are exfoliated simultaneously, in a one-step process. The resulting bio-catalysts were thoroughly characterized by powder X-ray diffraction, electron microscopy, biochemical and biophysical methods, while enzyme activity studies proved successful binding of enzymes with retention of activities or even enhancements in their specific activities. For example, GOx/HRP/BSA/CNT displayed 6 times the activity of a mixture of GOx/HRP/BSA, under otherwise identical conditions. Similarly, GOx/HRP/BSA/ZrP had 3.5 times the activity of the corresponding mixture of GOx/HRP/BSA, in the absence of the nanoplates. These robust nano-dispersions worked extraordinarily well as active bio-catalysts. These two kinds of fabricated biocatalyst dispersions are also highly stable.
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Affiliation(s)
- Mansi Malhotra
- Department of Chemistry, University of Connecticut, Storrs, CT, USA
| | - Ankarao Kalluri
- Department of Material Science, University of Connecticut, Storrs, CT, USA
| | - Challa Vijaya Kumar
- Department of Chemistry, University of Connecticut, Storrs, CT, USA.
- Department of Material Science, University of Connecticut, Storrs, CT, USA.
- Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
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21
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Srivastava N, Mohammad A, Singh R, Srivastava M, Syed A, Bahadur Pal D, Elgorban AM, Mishra PK, Gupta VK. Evaluation of enhanced production of cellulose deconstructing enzyme using natural and alkali pretreated sugar cane bagasse under the influence of graphene oxide. BIORESOURCE TECHNOLOGY 2021; 342:126015. [PMID: 34592619 DOI: 10.1016/j.biortech.2021.126015] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 09/19/2021] [Accepted: 09/20/2021] [Indexed: 06/13/2023]
Abstract
High production cost of cellulase enzyme is one of the main constraints in the practical implementation of biofuels at global scale. Therefore, the present investigation is focused to produce low-cost cellulase via sustainable strategies. This work evaluates to achieve enhanced fungal cellulase production using natural and pretreated sugar cane bagasse (SCB) via Rhizopus oryzae NS5 under the solid state fermentation (SSF) while implementing graphene oxide (GO) as a catalyst. A low alkali treatment showed better performance for cellulase production wherein 14 IU/gds FP activity is observed in 96 h using 0.5% alkali treated SCB, significantly higher as compared to 10 IU/gds FP in case of untreated SCB. Further, the effect of GO has been investigated on cellulase production, incubation temperature and pH of the production medium. Under the influence of 1.5% concentration of GO, alkali pretreated SCB produced maximum 25 IU/gds cellulase in 72 h at pH 5.0 and 40 °C.
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Affiliation(s)
- Neha Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Akbar Mohammad
- School of Chemical Engineering, Yeungnam University, Gyeongsan-si, Gyeongbuk 38541, South Korea
| | - Rajeev Singh
- Department of Environmental Studies, Satyawati College, University of Delhi, Delhi 110052, India
| | - Manish Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Asad Syed
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh 11451, Saudi Arabia
| | - Dan Bahadur Pal
- Department of Chemical Engineering, Birla Institute of Technology, Mesra Ranchi 835215, Jharkhand, India
| | - Abdallah M Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh 11451, Saudi Arabia
| | - P K Mishra
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India
| | - Vijai Kumar Gupta
- Biorefining and Advanced Materials Research Center, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh EH9 3JG, UK; Center for Safe and Improved Food, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh EH9 3JG, UK.
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22
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Noreen S, Perveen S, Shafiq N, Aslam S, Iqbal HM, Ashraf SS, Bilal M. Laccase-loaded functionalized graphene oxide assemblies with improved biocatalytic properties and decolorization performance. ENVIRONMENTAL TECHNOLOGY & INNOVATION 2021. [DOI: 10.1016/j.eti.2021.101884] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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23
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A Possible Mechanism of Graphene Oxide to Enhance Thermostability of D-Psicose 3-Epimerase Revealed by Molecular Dynamics Simulations. Int J Mol Sci 2021; 22:ijms221910813. [PMID: 34639151 PMCID: PMC8509277 DOI: 10.3390/ijms221910813] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 10/02/2021] [Accepted: 10/04/2021] [Indexed: 11/17/2022] Open
Abstract
Thermal stability is a limiting factor for effective application of D-psicose 3-epimerase (DPEase) enzyme. Recently, it was reported that the thermal stability of DPEase was improved by immobilizing enzymes on graphene oxide (GO) nanoparticles. However, the detailed mechanism is not known. In this study, we investigated interaction details between GO and DPEase by performing molecular dynamics (MD) simulations. The results indicated that the domain (K248 to D268) of DPEase was an important anchor for immobilizing DPEase on GO surface. Moreover, the strong interactions between DPEase and GO can prevent loop α1′-α1 and β4-α4 of DPEase from the drastic fluctuation. Since these two loops contained active site residues, the geometry of the active pocket of the enzyme remained stable at high temperature after the DPEase was immobilized by GO, which facilitated efficient catalytic activity of the enzyme. Our research provided a detailed mechanism for the interaction between GO and DPEase at the nano–biology interface.
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24
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Surface Modulation of Graphene Oxide for Amidase Immobilization with High Loadings for Efficient Biocatalysis. Biomolecules 2021; 11:biom11101399. [PMID: 34680032 PMCID: PMC8533581 DOI: 10.3390/biom11101399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 09/15/2021] [Accepted: 09/17/2021] [Indexed: 11/17/2022] Open
Abstract
As a type of important and versatile biocatalyst, amidase immobilization on solid materials has received broad attention with its relatively easy procedure and available reusability. However, current porous supports have suffered from limited loadings, and it is highly desired to develop a new type of material with abundant space so as to ensure a high loading of amidase. Here, graphene oxide was adopted as the support for amidase immobilization, which showed the highest loading capacity for amidase (~3000 mg/g) to date. To the best of our knowledge, it is the first case of amidase immobilized on graphene oxide. Through surface modulation via reducing the contents of oxygen-containing functional groups, activity recovery of immobilized amidase increased from 67.8% to 85.3%. Moreover, surface-modulated graphene oxide can efficiently uptake amidase under a wide range of pH, and the maximum loading can reach ~3500 mg/g. The resultant biocomposites exhibit efficient biocatalytic performance for asymmetric synthesis of a chiral amino acid (i.e., L-4-fluorophenylglycine, an intermediate of aprepitant).
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25
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Chaudhary K, Yadav N, Venkatesu P, Masram DT. Evaluation of Utilizing Functionalized Graphene Oxide Nanoribbons as Compatible Biomaterial for Lysozyme. ACS APPLIED BIO MATERIALS 2021; 4:6112-6124. [PMID: 35006873 DOI: 10.1021/acsabm.1c00450] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Graphene oxide nanoribbons with superior physicochemical properties acquired from graphene and carbon nanotubes have been used in various applications including biomedical applications. For biomedical applications, it is of utmost importance to understand how these graphene oxide nanoribbons interact with proteins and the influence they have on protein conformation and function. In this regard, an attempt has been made to evaluate the utility of graphene oxide nanoribbons as a compatible biomaterial for lysozyme (Lys) protein. In this study, graphene oxide nanoribbons (GONRs) synthesized from multiwalled carbon nanotubes (MWCNTs) were first functionalized with (3-aminopropyl)triethoxysilane (APTES) and further modified with vanillin (Val) to obtain Val-APTES-GONRs. On characterization, it was found that the Val-APTES-GONRs material had a ribbonlike morphology with abundant functionalities for interaction with protein. On evaluation of Val-APTES-GONRs as a compatible biomaterial for Lys, studies revealed that a lower concentration of the as-synthesized material has less influence on the conformation and the structure of Lys with better activity, whereas higher concentrations of the as-synthesized material had a greater influence on conformation and the structure of Lys with decreased activity. Overall, the thermal stability of Lys was maintained after introducing the Val-APTES-GONRs material. In addition, transmission electron microscopy (TEM), scanning electron microscopy (SEM), and Fourier transform infrared (FTIR) and Raman spectroscopies were performed for Lys composites with Val-APTES-GONRs for further understanding biomolecular interactions. This study is beneficial for designing advanced graphene-based materials for numerous bioinspired applications and better biomaterials for biotechnological use.
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Affiliation(s)
- Karan Chaudhary
- Department of Chemistry, University of Delhi, Delhi 110 007, India
| | - Niketa Yadav
- Department of Chemistry, University of Delhi, Delhi 110 007, India
| | | | - Dhanraj T Masram
- Department of Chemistry, University of Delhi, Delhi 110 007, India
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26
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Luo H, Li H, Liu Y, Yang L, Xiao Q, Huang S. Investigation on conformational variation and activity of trypsin affected by black phosphorus quantum dots via multi-spectroscopy and molecular modeling. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 256:119746. [PMID: 33819763 DOI: 10.1016/j.saa.2021.119746] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 03/22/2021] [Accepted: 03/22/2021] [Indexed: 06/12/2023]
Abstract
Binding interaction between black phosphorus quantum dots (BPQDs) and trypsin was researched deeply to illustrate the variations on conformation and activity of trypsin affected by BPQDs via multi-spectroscopy and molecular modeling. Experimental results implied that inherent fluorescence of trypsin was quenched by BPQDs via static fluorescence quenching mode. BPQDs bound with trypsin to construct ground-state complex under the binding forces of van der Waal interaction and hydrophobic interaction, resulting in the conformational change of trypsin to be more hydrophilic and incompact. The result of molecular modeling indicated that BPQDs interacted with trypsin at its allosteric site and inhibited the activity of trypsin via non-competitive manner. Finally, BPQDs efficiently inhibited the digestion activity of trypsin on human serum albumin, human cervical carcinoma HeLa cells, and human lung adenocarcinoma A549 cells. This work not only explores the in-depth understanding on the influence of BPQDs on proteinases but also paves the way for further application of BPQDs on human beings for diseases treatments.
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Affiliation(s)
- Huajian Luo
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Nanning 530001, PR China
| | - Haimei Li
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Nanning 530001, PR China
| | - Yi Liu
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Nanning 530001, PR China
| | - Liyun Yang
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Nanning 530001, PR China
| | - Qi Xiao
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Nanning 530001, PR China.
| | - Shan Huang
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Nanning 530001, PR China.
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27
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Borandeh S, Alimardani V, Abolmaali SS, Seppälä J. Graphene Family Nanomaterials in Ocular Applications: Physicochemical Properties and Toxicity. Chem Res Toxicol 2021; 34:1386-1402. [PMID: 34041903 PMCID: PMC8382253 DOI: 10.1021/acs.chemrestox.0c00340] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Graphene family nanomaterials (GFNs) are rapidly emerging for ocular applications due to their outstanding physicochemical properties. Since the eyes are very sensitive organs and the contact between the eyes and GFNs in eye drops, contact lenses, intraocular drug delivery systems and biosensors and even the workers handling these nanomaterials is inevitable, it is necessary to investigate their ocular toxicities and physiological interactions with cells as well as their toxicity mechanisms. The toxicity of GFNs can be extremely affected by their physicochemical properties, including composition, size, surface chemistry, and oxidation level as well as dose and the time of exposure. Up to now, there are several studies on the in vitro and in vivo toxicity of GFNs; however, a comprehensive review on ocular toxicity and applications of GFNs is missing, and a knowledge about the health risks of eye exposure to the GFNs is predominantly unspecified. This review highlights the ocular applications of GFNs and systematically covers the most recent advances of GFNs' physicochemical properties, in vitro and in vivo ocular toxicity, and the possible toxicity mechanisms as well as provides some perspectives on the potential risks of GFNs in material development and biomedical applications.
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Affiliation(s)
- Sedigheh Borandeh
- Polymer Technology, School of Chemical Engineering, Aalto University, Kemistintie 1, 02150 Espoo, Finland
| | - Vahid Alimardani
- Department of Pharmaceutical Nanotechnology, School of Pharmacy, Shiraz University of Medical Sciences, 7146864685 Shiraz, Iran
| | - Samira Sadat Abolmaali
- Department of Pharmaceutical Nanotechnology, School of Pharmacy, Shiraz University of Medical Sciences, 7146864685 Shiraz, Iran
| | - Jukka Seppälä
- Polymer Technology, School of Chemical Engineering, Aalto University, Kemistintie 1, 02150 Espoo, Finland
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28
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Wang H, Liu Z, Xiao J, Li C, Wang J, Xiao X, Huang H, Shrestha B, Tang L, Deng K, Zhou H. Visual Quantitative Detection of Glutathione and Cholesterol in Human Blood Based on the Thiol-Ene Click Reaction-Triggered Wettability Change of the Interface. Anal Chem 2021; 93:7292-7299. [PMID: 33956419 DOI: 10.1021/acs.analchem.1c00830] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Herein, we proposed an innovative visual quantitative sensing strategy based on thiol-ene click chemistry and the capillary action principle. A triethoxyvinylsilane (VTEO)- or mercaptopropylsilatrane (MPS)-modified interface was prepared for analyte recognition. Target analyte molecules containing thiol groups or C═C double bonds are coupled to the VTEO- or MPS-modified inner surface of the glass capillary tube via a thiol-ene click reaction, respectively. Then, the molecular recognition events were transformed into the wettability change of the inner wall of the glass capillary. The concentration of the target molecules was quantified by reading the height change of the water column in the capillary tube. As a proof of concept, this strategy was successfully used to build visual quantitative sensors for detecting glutathione and cholesterol. In addition, this strategy showed a good anti-interference ability to complex biological fluids and realized sensitive glutathione (GSH) and cholesterol detection in real human blood samples.
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Affiliation(s)
- Hao Wang
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education; Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers; Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion; Function Film Engineering Research Center of Hunan Province, Hunan University of Science and Technology, Xiangtan 411201, P. R. China.,School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
| | - Zhang Liu
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
| | - Jing Xiao
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
| | - Chunxiang Li
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
| | - Jinglun Wang
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education; Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers; Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion; Function Film Engineering Research Center of Hunan Province, Hunan University of Science and Technology, Xiangtan 411201, P. R. China.,School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
| | - Xiaojuan Xiao
- Molecular Biology Research Center & Hunan Province Key Laboratory of Basic and Applied Hematology, School of Life Sciences, Central South University, Changsha 410013, P. R. China
| | - Haowen Huang
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education; Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers; Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion; Function Film Engineering Research Center of Hunan Province, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
| | - Binita Shrestha
- Department of Biomedical Engineering, The University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Liang Tang
- Department of Biomedical Engineering, The University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Keqin Deng
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education; Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers; Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion; Function Film Engineering Research Center of Hunan Province, Hunan University of Science and Technology, Xiangtan 411201, P. R. China.,School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
| | - Hu Zhou
- Key Laboratory of Theoretical Organic Chemistry and Function Molecule, Ministry of Education; Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers; Hunan Provincial Key Laboratory of Advanced Materials for New Energy Storage and Conversion; Function Film Engineering Research Center of Hunan Province, Hunan University of Science and Technology, Xiangtan 411201, P. R. China.,School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan 411201, P. R. China
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29
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Speranza G. Carbon Nanomaterials: Synthesis, Functionalization and Sensing Applications. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:967. [PMID: 33918769 PMCID: PMC8069879 DOI: 10.3390/nano11040967] [Citation(s) in RCA: 77] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Revised: 03/16/2021] [Accepted: 03/17/2021] [Indexed: 02/07/2023]
Abstract
Recent advances in nanomaterial design and synthesis has resulted in robust sensing systems that display superior analytical performance. The use of nanomaterials within sensors has accelerated new routes and opportunities for the detection of analytes or target molecules. Among others, carbon-based sensors have reported biocompatibility, better sensitivity, better selectivity and lower limits of detection to reveal a wide range of organic and inorganic molecules. Carbon nanomaterials are among the most extensively studied materials because of their unique properties spanning from the high specific surface area, high carrier mobility, high electrical conductivity, flexibility, and optical transparency fostering their use in sensing applications. In this paper, a comprehensive review has been made to cover recent developments in the field of carbon-based nanomaterials for sensing applications. The review describes nanomaterials like fullerenes, carbon onions, carbon quantum dots, nanodiamonds, carbon nanotubes, and graphene. Synthesis of these nanostructures has been discussed along with their functionalization methods. The recent application of all these nanomaterials in sensing applications has been highlighted for the principal applicative field and the future prospects and possibilities have been outlined.
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Affiliation(s)
- Giorgio Speranza
- CMM—FBK, v. Sommarive 18, 38123 Trento, Italy;
- IFN—CNR, CSMFO Lab., via alla Cascata 56/C Povo, 38123 Trento, Italy
- Department of Industrial Engineering, University of Trento, v. Sommarive 9, 38123 Trento, Italy
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30
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Kokkonen P, Beier A, Mazurenko S, Damborsky J, Bednar D, Prokop Z. Substrate inhibition by the blockage of product release and its control by tunnel engineering. RSC Chem Biol 2021; 2:645-655. [PMID: 34458806 PMCID: PMC8341658 DOI: 10.1039/d0cb00171f] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Accepted: 12/17/2020] [Indexed: 11/21/2022] Open
Abstract
Substrate inhibition is the most common deviation from Michaelis-Menten kinetics, occurring in approximately 25% of known enzymes. It is generally attributed to the formation of an unproductive enzyme-substrate complex after the simultaneous binding of two or more substrate molecules to the active site. Here, we show that a single point mutation (L177W) in the haloalkane dehalogenase LinB causes strong substrate inhibition. Surprisingly, a global kinetic analysis suggested that this inhibition is caused by binding of the substrate to the enzyme-product complex. Molecular dynamics simulations clarified the details of this unusual mechanism of substrate inhibition: Markov state models indicated that the substrate prevents the exit of the halide product by direct blockage and/or restricting conformational flexibility. The contributions of three residues forming the possible substrate inhibition site (W140A, F143L and I211L) to the observed inhibition were studied by mutagenesis. An unusual synergy giving rise to high catalytic efficiency and reduced substrate inhibition was observed between residues L177W and I211L, which are located in different access tunnels of the protein. These results show that substrate inhibition can be caused by substrate binding to the enzyme-product complex and can be controlled rationally by targeted amino acid substitutions in enzyme access tunnels.
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Affiliation(s)
- Piia Kokkonen
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University Kamenice 5/A13 625 00 Brno Czech Republic
| | - Andy Beier
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University Kamenice 5/A13 625 00 Brno Czech Republic
- International Clinical Research Center, St. Anne's University Hospital Brno Pekarska 53 656 91 Brno Czech Republic
| | - Stanislav Mazurenko
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University Kamenice 5/A13 625 00 Brno Czech Republic
| | - Jiri Damborsky
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University Kamenice 5/A13 625 00 Brno Czech Republic
- International Clinical Research Center, St. Anne's University Hospital Brno Pekarska 53 656 91 Brno Czech Republic
| | - David Bednar
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University Kamenice 5/A13 625 00 Brno Czech Republic
- International Clinical Research Center, St. Anne's University Hospital Brno Pekarska 53 656 91 Brno Czech Republic
| | - Zbynek Prokop
- Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University Kamenice 5/A13 625 00 Brno Czech Republic
- International Clinical Research Center, St. Anne's University Hospital Brno Pekarska 53 656 91 Brno Czech Republic
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31
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Liu H, Hao C, Zhang Y, Yang H, Sun R. The interaction of graphene oxide-silver nanoparticles with trypsin: Insights from adsorption behaviors, conformational structure and enzymatic activity investigations. Colloids Surf B Biointerfaces 2021; 202:111688. [PMID: 33721802 DOI: 10.1016/j.colsurfb.2021.111688] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 02/22/2021] [Accepted: 03/07/2021] [Indexed: 11/28/2022]
Abstract
In this work, we synthesized graphene oxide-silver nanoparticles (GO-AgNPs) hybrids by one-pot method. Since there are relatively few reports on whether GO-AgNPs bind and change the structure and function of trypsin, A variety of methods were employed to systematically characterize the molecular interaction between GO-AgNPs and trypsin. Results exhibited that GO-AgNPs bound with trypsin to form a ground state complex. GO-AgNPs had higher adsorption capacity for trypsin compared with single GO. Langmuir-Blodgett assembly method was used to confirm that AgNPs did not interfere with the adsorption of trypsin by GO. The secondary structure and the microenvironment of amino acid residues of trypsin were altered after interacting with GO-AgNPs. In addition, GO-AgNPs can enhance the activity of trypsin and promote the hydrolysis of bovine serum protein (BSA) by trypsin. These findings provide important support for the application of GO-based nanocomposites in the efficient immobilization of enzymes.
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Affiliation(s)
- Hengyu Liu
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710062, China
| | - Changchun Hao
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710062, China.
| | - Yanyan Zhang
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710062, China
| | - Haiyan Yang
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710062, China
| | - Runguang Sun
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710062, China.
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32
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Chaudhary K, Kumar K, Venkatesu P, Masram DT. Protein immobilization on graphene oxide or reduced graphene oxide surface and their applications: Influence over activity, structural and thermal stability of protein. Adv Colloid Interface Sci 2021; 289:102367. [PMID: 33545443 DOI: 10.1016/j.cis.2021.102367] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 01/06/2021] [Accepted: 01/20/2021] [Indexed: 12/20/2022]
Abstract
Due to the essential role of biological macromolecules in our daily life; it is important to control the stability and activity of such macromolecules. Therefore, the most promising route for enhancement in stability and activity is immobilizing proteins on different support materials. Furthermore, large surface area and surface functional groups are the important features that are required for a better support system. These features of graphene oxide (GO) and reduced graphene oxide (RGO) makes them ideal support materials for protein immobilization. Studies show the successful formation of GO/RGO-protein complexes with enhancement in structural/thermal stability due to various interactions at the nano-bio interface and their utilization in various functional applications. The present review focuses on protein immobilization using GO/RGO as solid support materials. Moreover, we also emphasized on basic underlying mechanism and interactions (hydrophilic, hydrophobic, electrostatic, local protein-protein, hydrogen bonding and van der Walls) between protein and GO/RGO which influences structural stability and activity of enzymes/proteins. Furthermore, GO/RGO-protein complexes are utilized in various applications such as biosensors, bioimaging and theranostic agent, targeted drug delivery agents, and nanovectors for drug and protein delivery.
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33
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Emadi F, Emadi A, Gholami A. A Comprehensive Insight Towards Pharmaceutical Aspects of Graphene Nanosheets. Curr Pharm Biotechnol 2020; 21:1016-1027. [PMID: 32188383 DOI: 10.2174/1389201021666200318131422] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 02/13/2020] [Accepted: 02/16/2020] [Indexed: 12/12/2022]
Abstract
Graphene Derivatives (GDs) have captured the interest and imagination of pharmaceutical scientists. This review exclusively provides pharmacokinetics and pharmacodynamics information with a particular focus on biopharmaceuticals. GDs can be used as multipurpose pharmaceutical delivery systems due to their ultra-high surface area, flexibility, and fast mobility of charge carriers. Improved effects, targeted delivery to tissues, controlled release profiles, visualization of biodistribution and clearance, and overcoming drug resistance are examples of the benefits of GDs. This review focuses on the application of GDs for the delivery of biopharmaceuticals. Also, the pharmacokinetic properties and the advantage of using GDs in pharmaceutics will be reviewed to achieve a comprehensive understanding about the GDs in pharmaceutical sciences.
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Affiliation(s)
- Fatemeh Emadi
- School of Pharmacy and Medical Sciences, University of South Australia, Adelaide SA 5000, Iran
| | - Arash Emadi
- Faculty of Pharmacy and Pharmaceutical Sciences, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Ahmad Gholami
- Biotechnology Research Center, Shiraz University of Medical Sciences, Shiraz, P.O. Box: 7146864685, Iran
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34
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Liu Z, He J, Zhu T, Hu C, Bo R, Wusiman A, Hu Y, Wang D. Lentinan-Functionalized Graphene Oxide Is an Effective Antigen Delivery System That Modulates Innate Immunity and Improves Adaptive Immunity. ACS APPLIED MATERIALS & INTERFACES 2020; 12:39014-39023. [PMID: 32805921 DOI: 10.1021/acsami.0c12078] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Graphene oxide (GO) and lentinan have received great attention because of their utility in biomedical applications. Graphene oxide is utilized in drug- and vaccine-delivery systems due to its biocompatibility, large surface area, and outstanding adsorption capability, while lentinan has immunity-enhancing effects. In this study, we synthesized and characterized GO grafted with lentinan (LNT) as an adjuvant and investigated how to impact the immune responses. Lentinan-modified GO (GO-LNT) facilitated antigen uptake in macrophages and improved the efficiency of antigen application in vitro. Furthermore, in vivo, compared with GO/OVA, GO-LNT/OVA decreased the release rate of ovalbumin (OVA) to sustain long-term immune responses and boost the levels of IgG and IgG subtypes. Hence, we can infer that the effects of GO-LNT were a result of the increased amounts of antigen uptake by cells. Overall, our studies demonstrated that GO-LNT could suffice for a safe and effective vaccine-delivery system as well as an excellent adjuvant that both elicits a long-term immune memory response and potentiates cellular and humoral immunity.
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Affiliation(s)
- Zhenguang Liu
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Jin He
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Tianyu Zhu
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Cong Hu
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Ruonan Bo
- School of Veterinary Medicine, Yangzhou University, Yangzhou 225009, P. R. China
| | - Adelijiang Wusiman
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Yuanliang Hu
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Deyun Wang
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
- MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing 210095, P. R. China
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35
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Di Giosia M, Marforio TD, Cantelli A, Valle F, Zerbetto F, Su Q, Wang H, Calvaresi M. Inhibition of α-chymotrypsin by pristine single-wall carbon nanotubes: Clogging up the active site. J Colloid Interface Sci 2020; 571:174-184. [DOI: 10.1016/j.jcis.2020.03.034] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2019] [Revised: 02/26/2020] [Accepted: 03/08/2020] [Indexed: 10/24/2022]
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36
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Huang S, Li H, Liu Y, Yang L, Wang D, Xiao Q. Investigations of conformational structure and enzymatic activity of trypsin after its binding interaction with graphene oxide. JOURNAL OF HAZARDOUS MATERIALS 2020; 392:122285. [PMID: 32105952 DOI: 10.1016/j.jhazmat.2020.122285] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 12/07/2019] [Accepted: 02/10/2020] [Indexed: 06/10/2023]
Abstract
Herein, interaction between graphene oxide (GO) and trypsin was systematically characterized for deep investigations of conformational structure and enzymatic activity of trypsin affected by GO. Results indicated that GO bound with trypsin to form ground state complex with molar ratio of 1 to 1. Intrinsic fluorescence of trypsin was statically quenched by GO through van der Waal interaction, hydrophobic interaction, hydrogen bond, and electrostatic interaction. Both tertiary structure and secondary structure of trypsin were changed obviously after its binding with trypsin, resulting in the structure transformation of trypsin from the β-sheet structure to the α-helix structure. Since GO bound with the allosteric site of trypsin to inhibit its enzymatic activity via non-competitive manner, GO efficiently protected human serum albumin and human cervical carcinoma HeLa cells from the digestion of trypsin. These results explored the exact binding mechanism of GO with protease, which provides more important information for possible biological risk of GO on human beings.
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Affiliation(s)
- Shan Huang
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Guangxi Teachers Education University, Nanning, 530001, PR China
| | - Haimei Li
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Guangxi Teachers Education University, Nanning, 530001, PR China
| | - Yi Liu
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Guangxi Teachers Education University, Nanning, 530001, PR China
| | - Liyun Yang
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Guangxi Teachers Education University, Nanning, 530001, PR China
| | - Dan Wang
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Guangxi Teachers Education University, Nanning, 530001, PR China
| | - Qi Xiao
- Guangxi Key Laboratory of Natural Polymer Chemistry and Physics, College of Chemistry and Materials, Nanning Normal University, Guangxi Teachers Education University, Nanning, 530001, PR China.
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37
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Li X, Yang L, Wang Y, Du Z, Mao X, Sun D, Liu J, Zhou Y, Xu X. Studies on binding of single-stranded DNA with reduced graphene oxide-silver nanocomposites. IET Nanobiotechnol 2020; 14:308-313. [PMID: 32463021 PMCID: PMC8676041 DOI: 10.1049/iet-nbt.2019.0377] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 02/21/2020] [Indexed: 11/20/2022] Open
Abstract
The binding reaction of reduced graphene oxide-silver nanocomposites (rGO-AgNCs) with calf thymus single-stranded DNA (ssDNA) was studied by ultraviolet-visible absorption, fluorescence spectroscopy and circular dichroism (CD), using berberine hemisulphate (BR) dye as a fluorescence probe. The absorbance of ssDNA increases, but the fluorescence intensity is quenched with the addition of rGO-AgNCs. The binding of rGO-AgNCs with ssDNA was able to increase the quenching effects of BR and ssDNA, and induce the changes in CD spectra. All of the evidence indicated that there was a relatively strong interaction between ssDNA and rGO-AgNCs. The data obtained from fluorescence experiments revealed that the quenching process of ssDNA caused by rGO-AgNCs is primarily due to complex formation, i.e. static quenching. The increasing trend of the binding equilibrium constant (Ka) with rising temperature indicated that the binding process was an endothermic reaction. The calculated thermodynamic parameters showed that the binding process was thermodynamically spontaneous, and hydrophobic association played predominant roles in the binding of ssDNA to the surface of rGO-AgNCs.
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Affiliation(s)
- Xi Li
- Department of Clinical Laboratory, The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou 510006, Guangdong Province, People's Republic of China
| | - Linqing Yang
- Program for Scientific Research Innovation Team in Precision Medicine of Gynecologic Oncology, Affiliated Hospital of Jining Medical University, Jining 272067, Shandong Province, People's Republic of China
| | - Yunfei Wang
- Program for Scientific Research Innovation Team in Precision Medicine of Gynecologic Oncology, Affiliated Hospital of Jining Medical University, Jining 272067, Shandong Province, People's Republic of China
| | - Zhongyu Du
- College of Basic Medical, Jining Medical University, Jining 272067, Shandong Province, People's Republic of China
| | - Xuyan Mao
- College of Basic Medical, Jining Medical University, Jining 272067, Shandong Province, People's Republic of China
| | - Dezhi Sun
- College of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng 252059, Shandong Province, People's Republic of China
| | - Jun Liu
- College of Basic Medical, Jining Medical University, Jining 272067, Shandong Province, People's Republic of China
| | - Yu Zhou
- School of Public Health, Jining Medical College, Jining 272067, Shandong Province, People's Republic of China
| | - Xiangyu Xu
- College of Basic Medical, Jining Medical University, Jining 272067, Shandong Province, People's Republic of China.
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38
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Farmakes J, Schuster I, Overby A, Alhalhooly L, Lenertz M, Li Q, Ugrinov A, Choi Y, Pan Y, Yang Z. Enzyme Immobilization on Graphite Oxide (GO) Surface via One-Pot Synthesis of GO/Metal-Organic Framework Composites for Large-Substrate Biocatalysis. ACS APPLIED MATERIALS & INTERFACES 2020; 12:23119-23126. [PMID: 32338863 DOI: 10.1021/acsami.0c04101] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Although enzyme immobilization has improved many areas, biocatalysis involving large-size substrates is still challenging for immobilization platform design because of the protein damage under the often "harsh" reaction conditions required for these reactions. Our recent efforts indicate the potential of using Metal-Organic Frameworks (MOFs) to partially confine enzymes on the surface of MOF-based composites while offering sufficient substrate contact. Still, improvements are required to expand the feasible pH range and the efficiency of contacting substrates. In this contribution, we discovered that Zeolitic Imidazolate Framework (ZIF) and a new calcium-carboxylate based MOF (CaBDC) can both be coprecipitated with a model large-substrate enzyme, lysozyme (lys), to anchor the enzyme on the surface of graphite oxide (GO). We observed lys activity against its native substrate, bacterial cell walls, indicating lys was confined on composite surface. Remarkably, lys@GO/CaBDC displayed a stronger catalytic efficiency at pH 6.2 as compared to pH 7.4, indicating CaBDC is a good candidate for biocatalysis under acidic conditions as compared to ZIFs which disassemble under pH < 7. Furthermore, to understand the regions of lys being exposed to the reaction medium, we carried out a site-directed spin labeling (SDSL) electron paramagnetic resonance (EPR) spectroscopy study. Our data showed a preferential orientation of lys in GO/ZIF composite, whereas a random orientation in GO/CaBDC. This is the first report on immobilizing solution-state large-substrate enzymes on GO surface using two different MOFs via one-pot synthesis. These platforms can be generalized to other large-substrate enzymes to carry out catalysis under the optimal buffer/pH conditions. The orientation of enzyme at the molecular level on composite surfaces is critical for guiding the rational design of new composites.
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Affiliation(s)
- Jasmin Farmakes
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Isabelle Schuster
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Amanda Overby
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Lina Alhalhooly
- Department of Physics, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Mary Lenertz
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Qiaobin Li
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Angel Ugrinov
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Yongki Choi
- Department of Physics, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Yanxiong Pan
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
| | - Zhongyu Yang
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58102, United States
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39
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Ma H, Xu Z, Fang H, Lei X. Unexpected sequence adsorption features of polynucleotide ssDNA on graphene oxide. Phys Chem Chem Phys 2020; 22:11740-11746. [PMID: 32409813 DOI: 10.1039/d0cp01066a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The sequence features of single-stranded DNA (ssDNA) adsorbed on a graphene oxide (GO) surface are important for applications of the DNA/GO functional structure in biosensors, biomedicine, and materials science. In this study, molecular dynamics (MD) simulations were used to examine the adsorption of polynucleotide ssDNAs (A12, C12, G12, and T12) and single nucleotides (A, C, G, and T) on the GO surface. For the latter case, the nucleotide-GO interaction energy followed the trend G > A > C > T, even though it was influenced by specific adsorption sites. In the case of polynucleotides, unexpectedly polythymidine (T12) had the strongest interaction with the GO surface. The angle distributions of the adsorbed nucleobases indicated that T12 was more likely to form a quasi-parallel structure with GO compared to A12, C12, or G12. This was attributed to the weakest π-stacking interactions of thymine. Weaker intra-molecular base-stacking interactions made it easier to break the structures of pyrimidine bases relative to those of purine bases. Weaker inter-molecular base-stacking interactions between T12 and the GO surface enabled T12 to adjust its structure easily to a more stable one by slipping on the surface. This result provides a new understanding of polynucleotide ssDNA adsorption on GO surfaces, which will help in the design of functional DNA/GO structure-based platforms.
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Affiliation(s)
- Huishu Ma
- Division of Interfacial Water and Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, P.O. Box 800-204, Shanghai, 201800, China
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40
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Hata Y, Sawada T, Serizawa T. Confined Reduced Graphene Oxides as a Platform for DNA Sensing in Solutions Crowded with Biomolecules. ACS APPLIED BIO MATERIALS 2020; 3:3210-3216. [DOI: 10.1021/acsabm.0c00206] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Yuuki Hata
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Toshiki Sawada
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
- Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi-shi, Saitama 332-0012, Japan
| | - Takeshi Serizawa
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
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41
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Puglia MK, Malhotra M, Kumar CV. Engineering functional inorganic nanobiomaterials: controlling interactions between 2D-nanosheets and enzymes. Dalton Trans 2020; 49:3917-3933. [PMID: 31799574 DOI: 10.1039/c9dt03893k] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
A better understanding of the enzyme-nanosheet interface is imperative for the design of functional, robust inorganic nanobiomaterials and biodevices, now more than ever, for use in a broad spectrum of applications. This feature article discusses recent advances in controlling the enzyme-nanosheet interface with regards to α-zirconium(iv) phosphate (α-ZrP), graphene oxide (GO), graphene, and MoS2 nanosheets. Specific focus will be placed on understanding the mechanisms with which these materials interact with enzymes and elaborate on particular ways to engineer and control these interactions. Our main discoveries include: (1) upon adsorption to the nanosheet surface, a decrease in the entropy of the enzyme's denatured state enhances stability; (2) proteins are used to create biophilic landing pads for increased enzyme stability on many different types of nanosheets; (3) proteins and enzymes are used as exfoliants by shear force to produce biofunctionalized nanosheet suspensions; and (4) bionfunctionalized nanosheets exhibit no acute toxicity. Recognizing proper methods to engineer the interface between enzymes and 2D-nanosheets, therefore, is an important step towards making green, sustainable, and environmentally conscious inorganic bionanomaterials for sensing, catalysis and drug delivery applications, as well as towards the successful manipulation of enzymes for advanced applications.
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Affiliation(s)
- Megan K Puglia
- University of Connecticut, Department of Chemistry, Storrs, CT 06269, USA.
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42
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Lei X, Ma H, Fang H. Length feature of ssDNA adsorption onto graphene oxide with both large unoxidized and oxidized regions. NANOSCALE 2020; 12:6699-6707. [PMID: 32186546 DOI: 10.1039/c9nr10170e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
DNA/GO functional structures have been widely used in biosensors, biomedicine and materials science. However, most studies about DNA/GO functional structures do not take into account the coexistence of both large unoxidized and oxidized regions on GO sheets. This special local structure provides the boundary region, which is the junction area between unoxidized and oxidized regions, and exhibits a special amphiphilic property of the GO sheets. Here based on molecular dynamics simulations, our results predict that the adsorption efficiency of long strand ssDNA molecules adsorbed on GO is 43%. Further analysis has shown that the ssDNA adsorption behaviors on the GO surface are more likely to start in the boundary region, even for 20 mer ssDNA molecules. Looking into the adsorption dynamic process we can see that the hydrogen bonds between ssDNA and GO are very active and easily broken and formed, especially for the boundary region of the GO surface, resulting in easy capture and adsorption of the ssDNA molecules on this region. The result provides insightful understanding of the adsorption behavior of ssDNA molecules on this amphiphilic GO surface and is helpful in the design of DNA/GO functional structure-based biosensors.
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Affiliation(s)
- Xiaoling Lei
- Department of Physics, East China University of Science and Technology, Shanghai 200237, China.
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43
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Lin P, Zhang Y, Yao G, Huo H, Ren H, Wang Y, Wang S, Fang B. Immobilization of formate dehydrogenase on polyethylenimine-grafted graphene oxide with kinetics and stability study. Eng Life Sci 2020; 20:104-111. [PMID: 32874174 PMCID: PMC7447899 DOI: 10.1002/elsc.201900134] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Revised: 09/29/2019] [Accepted: 11/03/2019] [Indexed: 12/28/2022] Open
Abstract
Graphene oxide-based nanomaterials are promising for enzyme immobilization due to the possibilities of functionalizing surface. Polyethylenimine-grafted graphene oxide was constructed as a novel scaffold for immobilization of formate dehydrogenase. Compared with free formate dehydrogenase and graphene oxide adsorbed formate dehydrogenase, thermostability, storage stability, and reusability of polyethylenimine-grafted graphene oxide-formate dehydrogenase were enhanced. Typically, polyethylenimine-grafted graphene oxide-formate dehydrogenase remained 47.4% activity after eight times' repeat reaction. The immobilized capacity of the polyethylenimine-grafted graphene oxide was 2.4-folds of that of graphene oxide. Morphological and functional analysis of polyethylenimine-grafted graphene oxide-formate dehydrogenase was performed and the assembling mechanism based on multi-level interactions was studied. Consequently, this practical and facile strategy will likely find applications in biosynthesis, biosensing, and biomedical engineering.
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Affiliation(s)
- Peng Lin
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
| | - Yonghui Zhang
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
- College of Food and Biology EngineeringJimei UniversityXiamenP. R. China
| | - Guangxiao Yao
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
| | - Heyu Huo
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
| | - Hong Ren
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
| | - Yixuan Wang
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
| | - Shizhen Wang
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
- The Key Lab for Synthetic Biotechnology of Xiamen CityXiamen UniversityXiamenFujianP. R. China
| | - Baishan Fang
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical EngineeringXiamen UniversityXiamenP. R. China
- The Key Lab for Synthetic Biotechnology of Xiamen CityXiamen UniversityXiamenFujianP. R. China
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44
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Wu L, Jiang X. Enhancing Peroxidase Activity of Cytochrome c by Modulating Interfacial Interaction Forces with Graphene Oxide. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:1094-1102. [PMID: 31951423 DOI: 10.1021/acs.langmuir.9b03151] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Graphene oxide (GO) has drawn worldwide attention in various biomedical fields because of its unique properties, and great progress has been made in the past years. Probing the interaction between GO and proteins, understanding and evaluating potential impact of GO on the protein structure and function, is of significant importance for design and optimization of functional interfaces and revealing the bioeffect of GO materials. Cytochrome c (cyt c), one of the key components of respiratory chain, has played important roles in energy generation/consumption and many cellular processes including growth, proliferation, differentiation, and apoptosis. In this study, by combination of solution chemistry and spectroscopy, we systematically studied the interfacial interaction between GO and cyt c. Results suggest that GO could slightly perturb the active site of cyt c, enhancing its peroxidase activity. Structure of the active site is obviously changed with elapsed time, which in turn reduces peroxidase activity. Further study suggests that adsorption of cyt c on GO and the resulted structure change is a complex process resulting from the cooperation of various interaction forces. Hydrophobic interaction and π-π stacking, as well as electrostatic attraction, only slightly perturb the microenvironment of the active site of cyt c while hydrogen-bonding interaction is the main driving force for the structural change of the active site. Furthermore, long range electrostatic attraction between GO and cyt c may facilitate the short range hydrogen-bonding interaction, which intensifies the hydrogen-bonding-induced structural change. In addition, cyt c is partially reduced by GO in an alkaline environment. Based on the understanding of interfacial interaction mechanism between GO and cyt c, stable nanocomposites with enhanced peroxidase activity are successfully constructed by modulating the interfacial interaction forces. This work not only deepens the understanding of interaction between GO and functional protein, but also is of great importance for designing and applying of GO-based biomaterials.
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Affiliation(s)
- Lie Wu
- State Key Lab of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry , Chinese Academy of Sciences , Changchun 130022 , Jilin , China
| | - Xiue Jiang
- State Key Lab of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry , Chinese Academy of Sciences , Changchun 130022 , Jilin , China
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45
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Study of alkaline phosphatase interaction with putrescine using multi-spectroscopic and docking methods. Colloids Surf B Biointerfaces 2020; 185:110509. [DOI: 10.1016/j.colsurfb.2019.110509] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 09/13/2019] [Accepted: 09/14/2019] [Indexed: 12/19/2022]
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46
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Sharifi M, Sohrabi MJ, Hosseinali SH, Hasan A, Kani PH, Talaei AJ, Karim AY, Nanakali NMQ, Salihi A, Aziz FM, Yan B, Khan RH, Saboury AA, Falahati M. Enzyme immobilization onto the nanomaterials: Application in enzyme stability and prodrug-activated cancer therapy. Int J Biol Macromol 2020; 143:665-676. [DOI: 10.1016/j.ijbiomac.2019.12.064] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Revised: 12/05/2019] [Accepted: 12/08/2019] [Indexed: 01/04/2023]
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47
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Ding Z, Luo N, Yue H, Gao Y, Ma G, Wei W. In vivo immunological response of exposure to PEGylated graphene oxide via intraperitoneal injection. J Mater Chem B 2020; 8:6845-6856. [DOI: 10.1039/d0tb00499e] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
2D PEGylated graphene oxide showed stealth-but-immune-activating capacity on macrophages, along with specific intraperitoneal immunological response in vivo.
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Affiliation(s)
- Zhaowen Ding
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
- School of Chemical Engineering
| | - Nana Luo
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
- School of Chemical Engineering
| | - Hua Yue
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
- School of Chemical Engineering
| | - Yongjun Gao
- Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education
- College of Chemistry and Environmental Science
- Hebei University
- Baoding 071002
- P. R. China
| | - Guanghui Ma
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
- School of Chemical Engineering
| | - Wei Wei
- State Key Laboratory of Biochemical Engineering, Institute of Process Engineering
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
- School of Chemical Engineering
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48
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Hata Y, Saito Y, Sawada T, Matsumoto H, Serizawa T. Assembly of reduced graphene oxides into a three-dimensional porous structure via confinement within robust cellulose oligomer networks. RSC Adv 2019; 9:38848-38854. [PMID: 35540195 PMCID: PMC9075990 DOI: 10.1039/c9ra08318a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Accepted: 11/19/2019] [Indexed: 11/21/2022] Open
Abstract
The assembly of nanomaterials into a networked superstructure is a strategy used to construct macroscopic porous materials having the functional properties of nanomaterials. However, because nanomaterials generally prefer densely packed assembled states owing to their high surface energies, the construction of a fine porous structure is still a challenge. In this study, we demonstrate the assembly of reduced graphene oxides (rGOs) into a fine porous structure via confinement within robust cellulose oligomer networks. The confinement of rGOs within cellulose oligomer networks was achieved in one step via the enzymatic synthesis of cellulose oligomers. When the resultant cellulose oligomer gels confining rGOs were reduced by hydrogen iodide, the robust cellulose oligomer networks served as a confinement space for rGOs, preventing excessive aggregation of the rGOs and thus encouraging their assembly into a fine porous structure. Electrochemical measurements revealed that the porous rGO materials could act as electrode materials for supercapacitors. Our strategy based on simple physical confinement will allow for the creation of functional porous materials with excellent nanomorphologies from various nanomaterials.
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Affiliation(s)
- Yuuki Hata
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology 2-12-1 Ookayama, Meguro-ku Tokyo 152-8550 Japan
| | - Yoshitaka Saito
- Department of Materials Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology 2-12-1 Ookayama, Meguro-ku Tokyo 152-8550 Japan
| | - Toshiki Sawada
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology 2-12-1 Ookayama, Meguro-ku Tokyo 152-8550 Japan
- Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST) 4-1-8 Honcho Kawaguchi-shi Saitama 332-0012 Japan
| | - Hidetoshi Matsumoto
- Department of Materials Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology 2-12-1 Ookayama, Meguro-ku Tokyo 152-8550 Japan
| | - Takeshi Serizawa
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology 2-12-1 Ookayama, Meguro-ku Tokyo 152-8550 Japan
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49
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Chatzikonstantinou AV, Gkantzou E, Thomou E, Chalmpes N, Lyra KM, Kontogianni VG, Spyrou K, Patila M, Gournis D, Stamatis H. Enzymatic Conversion of Oleuropein to Hydroxytyrosol Using Immobilized β-Glucosidase on Porous Carbon Cuboids. NANOMATERIALS (BASEL, SWITZERLAND) 2019; 9:E1166. [PMID: 31416273 PMCID: PMC6724098 DOI: 10.3390/nano9081166] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 08/07/2019] [Accepted: 08/11/2019] [Indexed: 02/06/2023]
Abstract
In the present study, we developed novel β-glucosidase-based nano-biocatalysts for the bioconversion of oleuropein to hydroxytyrosol. Using non-covalent or covalent immobilization approaches, β-glucosidases from almonds and Thermotoga maritima were attached for the first time on oxidized and non-oxidized porous carbon cuboids (PCC). Various methods were used for the characterization of the bio-nanoconjugates, such as Fourier transform infrared spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS), atomic force microscopy (AFM), and fluorescence spectroscopy. The oxidation state of the nanο-support and the immobilization procedure play a key role for the immobilization efficiency or the catalytic activity of the immobilized β-glucosidases. The nano-biocatalysts were successfully used for the hydrolysis of oleuropein, which leads to the formation of its bioactive derivative, hydroxytyrosol (up to 2.4 g L-1), which is a phenolic compound with numerous health benefits. The bio-nanoconjugates exhibited high thermal and operational stability (up to 240 hours of repeated use), which indicated that they are efficient tools for various bio-transformations.
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Affiliation(s)
- Alexandra V Chatzikonstantinou
- Biotechnology Laboratory, Department of Biological Applications and Technologies, University of Ioannina, 45110 Ioannina, Greece
| | - Elena Gkantzou
- Biotechnology Laboratory, Department of Biological Applications and Technologies, University of Ioannina, 45110 Ioannina, Greece
| | - Eleni Thomou
- Department of Materials Science & Engineering, University of Ioannina, 45110 Ioannina, Greece
| | - Nikolaos Chalmpes
- Department of Materials Science & Engineering, University of Ioannina, 45110 Ioannina, Greece
| | - Kyriaki-Marina Lyra
- Department of Materials Science & Engineering, University of Ioannina, 45110 Ioannina, Greece
| | - Vasiliki G Kontogianni
- Section of Organic Chemistry & Biochemistry, Department of Chemistry, University of Ioannina, 45110 Ioannina, Greece
| | - Konstantinos Spyrou
- Department of Materials Science & Engineering, University of Ioannina, 45110 Ioannina, Greece
| | - Michaela Patila
- Biotechnology Laboratory, Department of Biological Applications and Technologies, University of Ioannina, 45110 Ioannina, Greece
| | - Dimitrios Gournis
- Department of Materials Science & Engineering, University of Ioannina, 45110 Ioannina, Greece.
| | - Haralambos Stamatis
- Biotechnology Laboratory, Department of Biological Applications and Technologies, University of Ioannina, 45110 Ioannina, Greece.
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50
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A Study on Technology Competition of Graphene Biomedical Technology Based on Patent Analysis. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9132613] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Graphene, with high biocompatibility, physiological solubility and stability, has been reported as an emerging material for biomedical applications such as biosensors, drug delivery, and tissue engineering. Recently, identifying the technological competition (TC) of graphene biomedical technology has received worldwide attention from stakeholders. However, few studies have attached great importance to review the TC of this field by the analysis of patents. The main objective of this study is to develop a new and comprehensive method to investigate TC in a given technology field by conducting a patent review and then employing a patent roadmap to dig out the technology opportunity. The effectiveness of the approach is verified with the case study on graphene biomedical technology. Compared to previous research, this study makes the following important contributions. First, this study provides a new and systematic framework for the dynamic analysis of TC in a given technology field. It also extends the research perspectives of TC for industry, assignees, and technology, employs a patent roadmap to dig out technology opportunities, and enables stakeholders to understand TC from a dynamic perspective. Second, this study integrates patent analysis with a patent roadmap that has not appeared in existing methodologies of patent review. Third, it first introduces indicators (e.g., high value patent and competition position of top assignees) to the previous patent roadmap and provides a new methodology for patent roadmaps from a country level and assignee level. Finally, this study provides useful information for stakeholders interested in graphene biomedical technology, helps them to find new technology opportunities in this field, encourages them to determine the direction of future research, and has important significance for its application to diverse other emerging technologies.
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