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Recent applications of ionic liquid-based tags in glycoscience. Carbohydr Res 2022; 520:108643. [PMID: 35977445 DOI: 10.1016/j.carres.2022.108643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 07/25/2022] [Accepted: 07/26/2022] [Indexed: 11/22/2022]
Abstract
The functionalization of glycosides with ionic compounds such as ionic liquids provides enhanced polarity for the labelled glycans thanks to the presence of a permanent positive charge. The chemical derivatisation of glycans with ionic liquids constitutes an emerging strategy to boost the detection sensitivity in MS applications. This allows the straightforward monitoring and detection of the presence of labelled glycans in complex matrices and in those cases where very limited amounts of material were available such as in biological samples and chemoenzymatic reactions. The use of ionic liquid based derivatisation agents can be further exploited for the labelling of live cells via metabolic oligosaccharide engineering for the detection of cancer biomarkers and for the tuning of live cells-surface properties with implications in cancer prognosis and progression. In this mini-review we summarise the latest development of the ionic liquid based derivatisation agents in glycoscience focussing on their use for sensitive MS applications.
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2
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Singh Y, Geringer SA, Demchenko AV. Synthesis and Glycosidation of Anomeric Halides: Evolution from Early Studies to Modern Methods of the 21st Century. Chem Rev 2022; 122:11701-11758. [PMID: 35675037 DOI: 10.1021/acs.chemrev.2c00029] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Advances in synthetic carbohydrate chemistry have dramatically improved access to common glycans. However, many novel methods still fail to adequately address challenges associated with chemical glycosylation and glycan synthesis. Since a challenge of glycosylation has remained, scientists have been frequently returning to the traditional glycosyl donors. This review is dedicated to glycosyl halides that have played crucial roles in shaping the field of glycosciences and continue to pave the way toward our understanding of chemical glycosylation.
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Affiliation(s)
- Yashapal Singh
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Scott A Geringer
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Alexei V Demchenko
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States.,Department of Chemistry, Saint Louis University, 3501 Laclede Avenue, St. Louis, Missouri 63103, United States
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3
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Nasibullin R, Valiev R, Faiskanova K, Stepanova E, Cherepanov V, Filimonov V, Sundholm D. Deacetylation of per-acetatylated glycopyranosides: An overall pattern for acidic catalyzis. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.03.022] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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4
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Zhao X, Cai P, Sun C, Pan Y. Application of ionic liquids in separation and analysis of carbohydrates: State of the art and future trends. Trends Analyt Chem 2019. [DOI: 10.1016/j.trac.2018.12.008] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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5
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Zhang T, Li X, Song H, Yao S. Ionic liquid-assisted catalysis for glycosidation of two triterpenoid sapogenins. NEW J CHEM 2019. [DOI: 10.1039/c9nj04271g] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In order to study the universality of ionic liquids-assisted glycosidation and explore their catalytic behaviors together with potential, oleanolic acid and ursolic acid were selected to establish catalytic system as typical triterpene sapogenins.
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Affiliation(s)
- Tenghe Zhang
- School of Chemical Engineering
- Sichuan University
- Chengdu 610065
- People's Republic of China
| | - Xinlu Li
- School of Chemical Engineering
- Sichuan University
- Chengdu 610065
- People's Republic of China
| | - Hang Song
- School of Chemical Engineering
- Sichuan University
- Chengdu 610065
- People's Republic of China
| | - Shun Yao
- School of Chemical Engineering
- Sichuan University
- Chengdu 610065
- People's Republic of China
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6
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Panza M, Pistorio SG, Stine KJ, Demchenko AV. Automated Chemical Oligosaccharide Synthesis: Novel Approach to Traditional Challenges. Chem Rev 2018; 118:8105-8150. [PMID: 29953217 PMCID: PMC6522228 DOI: 10.1021/acs.chemrev.8b00051] [Citation(s) in RCA: 216] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Advances in carbohydrate chemistry have certainly made common oligosaccharides much more accessible. However, many current methods still rely heavily upon specialized knowledge of carbohydrate chemistry. The application of automated technologies to chemical and life science applications such as genomics and proteomics represents a vibrant field. These automated technologies also present opportunities for their application to organic synthesis, including that of the synthesis of oligosaccharides. However, application of automated methods to the synthesis of carbohydrates is an underdeveloped area as compared to other classes of biomolecules. The overarching goal of this review article is to present the advances that have been made at the interface of carbohydrate chemistry and automated technology.
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Affiliation(s)
- Matteo Panza
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Salvatore G. Pistorio
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Keith J. Stine
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
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7
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Kulkarni SS, Wang CC, Sabbavarapu NM, Podilapu AR, Liao PH, Hung SC. "One-Pot" Protection, Glycosylation, and Protection-Glycosylation Strategies of Carbohydrates. Chem Rev 2018; 118:8025-8104. [PMID: 29870239 DOI: 10.1021/acs.chemrev.8b00036] [Citation(s) in RCA: 202] [Impact Index Per Article: 33.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Carbohydrates, which are ubiquitously distributed throughout the three domains of life, play significant roles in a variety of vital biological processes. Access to unique and homogeneous carbohydrate materials is important to understand their physical properties, biological functions, and disease-related features. It is difficult to isolate carbohydrates in acceptable purity and amounts from natural sources. Therefore, complex saccharides with well-defined structures are often most conviently accessed through chemical syntheses. Two major hurdles, regioselective protection and stereoselective glycosylation, are faced by carbohydrate chemists in synthesizing these highly complicated molecules. Over the past few years, there has been a radical change in tackling these problems and speeding up the synthesis of oligosaccharides. This is largely due to the development of one-pot protection, one-pot glycosylation, and one-pot protection-glycosylation protocols and streamlined approaches to orthogonally protected building blocks, including those from rare sugars, that can be used in glycan coupling. In addition, new automated strategies for oligosaccharide syntheses have been reported not only for program-controlled assembly on solid support but also by the stepwise glycosylation in solution phase. As a result, various sugar molecules with highly complex, large structures could be successfully synthesized. To summarize these recent advances, this review describes the methodologies for one-pot protection and their one-pot glycosylation into the complex glycans and the chronological developments associated with automated syntheses of oligosaccharides.
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Affiliation(s)
- Suvarn S Kulkarni
- Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
| | | | | | - Ananda Rao Podilapu
- Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
| | - Pin-Hsuan Liao
- Institute of Chemistry , Academia Sinica , Taipei 115 , Taiwan
| | - Shang-Cheng Hung
- Genomics Research Center , Academia Sinica , Taipei 115 , Taiwan
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8
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Li W, Gao Y, Li Q, Li ZJ. Ionic-liquid supported rapid synthesis of an N-glycan core pentasaccharide on a 10 g scale. Org Biomol Chem 2018; 16:4720-4727. [DOI: 10.1039/c8ob01046c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
A hetero-branched N-glycan core pentasaccharide was rapidly assembled on a new ionic liquid support on a 10 g scale.
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Affiliation(s)
- Wei Li
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Yu Gao
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Qing Li
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Zhong-Jun Li
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
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9
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Maiti K, Syal K, Chatterji D, Jayaraman N. Synthetic Arabinomannan Heptasaccharide Glycolipids Inhibit Biofilm Growth and Augment Isoniazid Effects in Mycobacterium smegmatis. Chembiochem 2017; 18:1959-1970. [PMID: 28771901 DOI: 10.1002/cbic.201700247] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2017] [Indexed: 02/04/2023]
Abstract
Biofilm formation, involving attachment to an adherent surface, is a critical survival strategy of mycobacterial colonies in hostile environmental conditions. Here we report the synthesis of heptasaccharide glycolipids based on mannopyranoside units anchored on to a branched arabinofuranoside core. Two types of glycolipids-2,3-branched and 2,5-branched-were synthesized and evaluated for their efficacies in inhibiting biofilm growth by the non-pathogenic mycobacterium variant Mycobacterium smegmatis. Biofilm formation was inhibited at a minimum biofilm growth inhibition concentration (MBIC) of 100 μg mL-1 in the case of the 2,5-branched heptasaccharide glycolipid. Further, we were able to ascertain that a combination of the drug isoniazid with the branched heptasaccharide glycolipid (50 μg mL-1 ) potentiates the drug, making it three times more effective, with an improved MBIC of 30 μg mL-1 . These studies establish that synthetic glycolipids not only act as inhibitors of biofilm growth, but also provide a synergistic effect when combined with significantly lowered concentrations of isoniazid to disrupt the biofilm structures of the mycobacteria.
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Affiliation(s)
- Krishnagopal Maiti
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, 560 012, India
| | - Kirtimaan Syal
- Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560 012, India
| | - Dipankar Chatterji
- Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560 012, India
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10
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Sasaki N, Nokami T, Itoh T. Synthesis of a TMG-chitotriomycin Precursor Based on Electrolyte-free Electrochemical Glycosylation Using an Ionic Liquid Tag. CHEM LETT 2017. [DOI: 10.1246/cl.170126] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Norihiko Sasaki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, 4-101 Koyama-minami, Tottori 680-8552
| | - Toshiki Nokami
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, 4-101 Koyama-minami, Tottori 680-8552
- Center for Research on Green Sustainable Chemistry, Graduate School of Engineering, Tottori University, 4-101 Koyama-minami, Tottori 680-8552
| | - Toshiyuki Itoh
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, 4-101 Koyama-minami, Tottori 680-8552
- Center for Research on Green Sustainable Chemistry, Graduate School of Engineering, Tottori University, 4-101 Koyama-minami, Tottori 680-8552
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11
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12
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Matsubara Y, Grills DC, Koide Y. Experimental Insight into the Thermodynamics of the Dissolution of Electrolytes in Room-Temperature Ionic Liquids: From the Mass Action Law to the Absolute Standard Chemical Potential of a Proton. ACS OMEGA 2016; 1:1393-1411. [PMID: 31457204 PMCID: PMC6640753 DOI: 10.1021/acsomega.6b00129] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2016] [Accepted: 12/12/2016] [Indexed: 06/10/2023]
Abstract
Room-temperature ionic liquids (ILs) are a class of nonaqueous solvents that have expanded the realm of modern chemistry, drawing increasing interest over the last few decades, not only in terms of their own unique physical chemistry but also in many applications including organic synthesis, electrochemistry, and biological systems, wherein charged solutes (i.e., electrolytes) often play vital roles. However, our fundamental understanding of the dissolution of an electrolyte in an IL is still rather limited. For example, the activity of a charged species has frequently been assumed to be unity without a clear experimental basis. In this study, we have discussed a standard component-based scheme for the dissolution of an electrolyte in an IL, supported by our observation of ideal Nernstian responses for the reduction of silver and ferrocenium salts in a representative IL, 1-ethyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide ([emim+][NTf2 -] or [emim+][TFSI-]). Using this scheme, which was also supported by temperature-dependent measurements with ILs having longer alkyl chains in the imidazolium ring, and the solubility of the IL in water, we established the concept of Gibbs transfer energies of "pseudo-single ions" from the IL to conventional neutral molecular solvents (water, acetonitrile, and methanol). This concept, which bridges component- and constituent-based energetics, utilizes an extrathermodynamic assumption, which itself was justified by experimental observations. These energies enable us to eliminate inner potential differences between the IL and molecular solvents (solvent-solvent interactions), that is, on a practical level, conditional liquid junction potential differences, so that we can discuss ion-solvent interactions independently. Specifically, we have examined the standard electrode potential of the ferrocenium/ferrocene redox couple, Fc+/Fc, and the absolute intrinsic standard chemical potential of a proton in [emim+][NTf2 -], finding that the proton is more acidic in the IL than in water by 6.5 ± 0.6 units on the unified pH scale. These results strengthen the progress on the physical chemistry of ions in IL solvent systems on the basis of their activities, providing a rigorous thermodynamic framework.
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Affiliation(s)
- Yasuo Matsubara
- Department
of Material and Life Chemistry, Kanagawa
University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama 221-8686, Japan
| | - David C. Grills
- Chemistry
Division, Brookhaven National Laboratory, P.O. Box 5000, Upton, New
York 11973-5000, United
States
| | - Yoshihiro Koide
- Department
of Material and Life Chemistry, Kanagawa
University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama 221-8686, Japan
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13
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Nokami T, Sasaki N, Isoda Y, Itoh T. Ionic-Liquid Tag with Multiple Functions in Electrochemical Glycosylation. ChemElectroChem 2016. [DOI: 10.1002/celc.201600311] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Toshiki Nokami
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; 4-101 Koyamacho-minami, Tottori city 680-8552 Tottori Japan
- Center for Research on Green and Sustainable Chemistry; Faculty of Engineering; Tottori University; 4-101 Koyamacho-minami, Tottori city 680-8552 Tottori Japan
| | - Norihiko Sasaki
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; 4-101 Koyamacho-minami, Tottori city 680-8552 Tottori Japan
| | - Yuta Isoda
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; 4-101 Koyamacho-minami, Tottori city 680-8552 Tottori Japan
| | - Toshiyuki Itoh
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; 4-101 Koyamacho-minami, Tottori city 680-8552 Tottori Japan
- Center for Research on Green and Sustainable Chemistry; Faculty of Engineering; Tottori University; 4-101 Koyamacho-minami, Tottori city 680-8552 Tottori Japan
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14
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Gillard L, Tran AT, Boyer FD, Beau JM. Chitooligosaccharide Synthesis Using an Ionic Tag. European J Org Chem 2016. [DOI: 10.1002/ejoc.201501476] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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15
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Meng S, Tian T, Wang YH, Meng XB, Li ZJ. Convergent synthesis of oligosaccharides on the gram-scale using cetyl thioglycoside based on a hydrophobically assisted switching phase method. Org Biomol Chem 2016; 14:7722-30. [DOI: 10.1039/c6ob01267a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
A hydrophobically assisted switching phase (HASP) method is an efficient strategy for the synthesis of carrier-loaded oligosaccharides.
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Affiliation(s)
- Shuai Meng
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Tian Tian
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Yun-He Wang
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Xiang-Bao Meng
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Zhong-Jun Li
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
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16
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Farrán A, Cai C, Sandoval M, Xu Y, Liu J, Hernáiz MJ, Linhardt RJ. Green solvents in carbohydrate chemistry: from raw materials to fine chemicals. Chem Rev 2015; 115:6811-53. [PMID: 26121409 DOI: 10.1021/cr500719h] [Citation(s) in RCA: 155] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Angeles Farrán
- †Departamento de Química Orgánica y Bio-Orgánica, Facultad de Ciencias, Universidad Nacional de Educación a Distancia, Paseo Senda del Rey 4, 28040 Madrid, Spain
| | - Chao Cai
- ‡Key Laboratory of Marine Drugs of Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China
| | - Manuel Sandoval
- §Escuela de Química, Universidad Nacional of Costa Rica, Post Office Box 86, 3000 Heredia, Costa Rica
| | - Yongmei Xu
- ∥Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina, Chapel Hill, North Carolina 27599, United States
| | - Jian Liu
- ∥Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina, Chapel Hill, North Carolina 27599, United States
| | - María J Hernáiz
- ▽Departamento de Química Orgánica y Farmacéutica, Facultad de Farmacia, Universidad Complutense de Madrid, Pz/Ramón y Cajal s/n, 28040 Madrid, Spain
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17
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Meng S, Tian T, Han D, Wang LN, Tang SG, Meng XB, Li ZJ. Efficient assembly of oligomannosides using the hydrophobically assisted switching phase method. Org Biomol Chem 2015; 13:6711-22. [PMID: 25967589 DOI: 10.1039/c5ob00730e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The hydrophobically assisted switching phase (HASP) method was applied in the assembly of oligomannosides. A new mannosyl donor with high reactivity was selected after a series of optimization studies, which was suitable for the synthesis of oligomannosides via the HASP method. The practicability of the HASP method towards the synthesis of branched oligosaccharides was explored and two branched penta-mannosides were assembled efficiently.
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Affiliation(s)
- Shuai Meng
- The State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China.
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Nigudkar SS, Demchenko AV. Stereocontrolled 1,2- cis glycosylation as the driving force of progress in synthetic carbohydrate chemistry. Chem Sci 2015; 6:2687-2704. [PMID: 26078847 PMCID: PMC4465199 DOI: 10.1039/c5sc00280j] [Citation(s) in RCA: 317] [Impact Index Per Article: 35.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2015] [Accepted: 03/05/2015] [Indexed: 01/21/2023] Open
Abstract
Recent developments in stereoselective 1,2-cis glycosylation that have emerged during the past decade are surveyed herein. Recent developments in stereoselective 1,2-cis glycosylation that have emerged during the past decade are surveyed herein. For detailed coverage of the previous achievements in the field the reader is referred to our earlier reviews: A. V. Demchenko, Curr. Org. Chem. , 2003, 7 , 35–79 and Synlett , 2003, 1225–1240.
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Affiliation(s)
- Swati S. Nigudkar
- Department of Chemistry and Biochemistry , University of Missouri – St. Louis , One University Blvd , St. Louis , MO 63121 , USA .
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry , University of Missouri – St. Louis , One University Blvd , St. Louis , MO 63121 , USA .
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19
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An efficient ionic liquid supported divergent assembly of 3,6-branched glucosamine-containing pentasaccharide. CHINESE CHEM LETT 2014. [DOI: 10.1016/j.cclet.2014.09.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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20
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Abstract
An ionic liquid-supported synthetic method for the construction of glycopeptides in high yields is reported. This method avoids the use of large excesses of reagents and chromatographic purification and, therefore, represents a useful addition to existing approaches for the ionic liquid-supported synthesis of oligosaccharides and peptides.
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Affiliation(s)
- Changgeng Li
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences , Chaoyang District, Beijing 100101, China
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21
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An AIL/IL-based liquid/liquid extraction system for the purification of His-tagged proteins. Appl Microbiol Biotechnol 2014; 98:5665-75. [PMID: 24743984 DOI: 10.1007/s00253-014-5737-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2014] [Revised: 03/21/2014] [Accepted: 03/29/2014] [Indexed: 10/25/2022]
Abstract
A sorbent based on affinity ionic liquid (AIL), triazacyclononane-ionic liquid, was synthesized, characterized, and applied to the extraction of histidine (His)-tagged proteins from aqueous buffer to ionic liquid (IL) phase. The adsorbed His-tagged proteins could be back-extracted from the IL phase to the aqueous buffer with an imidazole solution. The specific binding of His-tagged proteins with AIL/IL could be affected by a few factors including the ionic strength and coordinated metal ions. In the case of His-tagged enhanced green fluorescent protein (EGFP), the maximum binding capacity of Cu(2+)-AIL/IL reached 2.58 μg/μmol under the optimized adsorption conditions. The eluted His-tagged EGFP kept fluorescent and remained active through the purification process. Moreover, a tandem extraction process successively using Cu(2+)-AIL/IL and Zn(2+)-AIL/IL systems was developed, which was proven very efficient to obtain the ultimate protein with a purity of about 90 %. An effective reclamation method for the AIL/IL extraction system was further established. The sorbent could be easily regenerated by removing metal ions with EDTA and the followed reimmobilization of metal ions. Easy handling of the presented M(2+)-AIL/IL system and highly specific ability to absorb His-tagged proteins make it attractive and potentially applicable in biomolecular separation.
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22
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Heuckendorff M, Premathilake HD, Pornsuriyasak P, Madsen AØ, Pedersen CM, Bols M, Demchenko AV. Superarming of glycosyl donors by combined neighboring and conformational effects. Org Lett 2013; 15:4904-7. [PMID: 24006853 PMCID: PMC3823551 DOI: 10.1021/ol402371b] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
A novel glycosyl donor that combines the concepts of both conformational and electronic superarming has been synthesized. The reactivity and selectivity of the donor have been tested in competition experiments.
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Affiliation(s)
- Mads Heuckendorff
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen Ø, Denmark
| | - Hemali D. Premathilake
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, MO 63121, USA
| | - Papapida Pornsuriyasak
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, MO 63121, USA
| | - Anders Ø. Madsen
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen Ø, Denmark
| | | | - Mikael Bols
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen Ø, Denmark
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, MO 63121, USA
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23
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Galan MC, Jones RA, Tran AT. Recent developments of ionic liquids in oligosaccharide synthesis: the sweet side of ionic liquids. Carbohydr Res 2013; 375:35-46. [DOI: 10.1016/j.carres.2013.04.011] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2013] [Revised: 04/09/2013] [Accepted: 04/10/2013] [Indexed: 11/29/2022]
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Galan MC, Tran AT, Bromfield K, Rabbani S, Ernst B. Ionic-liquid-based MS probes for the chemo-enzymatic synthesis of oligosaccharides. Org Biomol Chem 2012; 10:7091-7. [DOI: 10.1039/c2ob25855b] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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25
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Ionic liquid-supported synthesis of dihydroquinazolines and tetrahydroquinazolines under microwave irradiation. Mol Divers 2011; 16:241-9. [DOI: 10.1007/s11030-011-9350-1] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2011] [Accepted: 12/03/2011] [Indexed: 11/26/2022]
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26
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Tran AT, Jones RA, Pastor J, Boisson J, Smith N, Galan MC. Copper(II) Triflate: A Versatile Catalyst for the One-Pot Preparation of Orthogonally Protected Glycosides. Adv Synth Catal 2011. [DOI: 10.1002/adsc.201100228] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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27
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Kaeothip S, Demchenko AV. Expeditious oligosaccharide synthesis via selective, semi-orthogonal, and orthogonal activation. Carbohydr Res 2011; 346:1371-88. [PMID: 21663897 PMCID: PMC3129461 DOI: 10.1016/j.carres.2011.05.004] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2011] [Revised: 05/04/2011] [Accepted: 05/05/2011] [Indexed: 12/11/2022]
Abstract
Traditional strategies for oligosaccharide synthesis often require extensive protecting and/or leaving group manipulations between each glycosylation step, thereby increasing the total number of synthetic steps while decreasing the efficiency of the synthesis. In contrast, expeditious strategies allow for the rapid chemical synthesis of complex carbohydrates by minimizing extraneous chemical manipulations. Oligosaccharide synthesis by selective activation of one leaving group over another is one such expeditious strategy. Herein, the significant improvements that have recently emerged in the area of the selective activation are discussed. The development of orthogonal strategy further expands the scope of the selective activation methodology. Surveyed in this article, are representative examples wherein these excellent innovations have been applied to the synthesis of various oligosaccharide sequences.
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Affiliation(s)
- Sophon Kaeothip
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, MO 63121, USA
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, MO 63121, USA
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28
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Ma Q, Sun S, Meng XB, Li Q, Li SC, Li ZJ. Assembly of Homolinear α(1→2)-Linked Nonamannoside on Ionic Liquid Support. J Org Chem 2011; 76:5652-60. [DOI: 10.1021/jo2006126] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Qing Ma
- The State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, P. R. China
| | - Sheng Sun
- The State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, P. R. China
| | - Xiang-Bao Meng
- The State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, P. R. China
| | - Qing Li
- The State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, P. R. China
| | - Shu-Chun Li
- The State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, P. R. China
| | - Zhong-Jun Li
- The State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, P. R. China
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Talisman IJ, Kumar V, Razzaghy J, Malhotra SV. O-Glycosidation reactions promoted by in situ generated silver N-heterocyclic carbenes in ionic liquids. Carbohydr Res 2011; 346:883-90. [DOI: 10.1016/j.carres.2011.03.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2010] [Revised: 02/23/2011] [Accepted: 03/03/2011] [Indexed: 10/18/2022]
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30
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Upadhyay SK, Jursic BS. Preparation of tagged glucose as a key intermediate in the synthesis of branched oligosaccharides. Tetrahedron Lett 2011. [DOI: 10.1016/j.tetlet.2011.01.149] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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31
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Codée JD, Ali A, Overkleeft HS, van der Marel GA. Novel protecting groups in carbohydrate chemistry. CR CHIM 2011. [DOI: 10.1016/j.crci.2010.05.010] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Tran AT, Burden R, Racys DT, Carmen Galan M. Ionic catch and release oligosaccharide synthesis (ICROS). Chem Commun (Camb) 2011; 47:4526-8. [DOI: 10.1039/c0cc05580h] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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33
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Huang JY, Li A, Li JR. An efficient approach for the synthesis of oligosaccharides using ionic liquid supported glycosylation. Carbohydr Polym 2011. [DOI: 10.1016/j.carbpol.2010.07.068] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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34
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Galan MC, Benito-Alifonso D, Watt GM. Carbohydrate chemistry in drug discovery. Org Biomol Chem 2011; 9:3598-610. [DOI: 10.1039/c0ob01017k] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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35
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Pépin M, Hubert-Roux M, Martin C, Guillen F, Lange C, Gouhier G. First Examples of α-(1→4)-Glycosylation Reactions on Ionic Liquid Supports. European J Org Chem 2010. [DOI: 10.1002/ejoc.201000754] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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36
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37
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Kim CB, Lee SK, Park KY. Liquid-Phase Synthesis of Biaryl Compounds by the Hydrogenolysis of Pentaerythritol-Supported Biarylsulfonates. B KOREAN CHEM SOC 2010. [DOI: 10.5012/bkcs.2010.31.9.2459] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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38
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de Paz JL, Mar Kayser M, Macchione G, Nieto PM. Exploration of the use of an acylsulfonamide safety-catch linker for the polymer-supported synthesis of hyaluronic acid oligosaccharides. Carbohydr Res 2010; 345:565-71. [DOI: 10.1016/j.carres.2009.12.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2009] [Revised: 12/17/2009] [Accepted: 12/21/2009] [Indexed: 10/20/2022]
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39
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Shen W, Wang L, Tang J, Qian Z, Tong X. Ionic Liquid-coordinated Ytterbium(III) Sulfonate Catalyzed Michael Addition of Indoles to Electron-deficient Nitroolefins. CHINESE J CHEM 2010. [DOI: 10.1002/cjoc.201090094] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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40
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Galan MC, Tran AT, Bernard C. Ionic-liquid-based catch and release mass spectroscopy tags for enzyme monitoring. Chem Commun (Camb) 2010; 46:8968-70. [DOI: 10.1039/c0cc04224b] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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41
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Huo C, Chan TH. A novel liquid-phase strategy for organic synthesis using organic ions as soluble supports. Chem Soc Rev 2010; 39:2977-3006. [DOI: 10.1039/b914497h] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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42
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Muthana S, Cao H, Chen X. Recent progress in chemical and chemoenzymatic synthesis of carbohydrates. Curr Opin Chem Biol 2009; 13:573-81. [PMID: 19833544 DOI: 10.1016/j.cbpa.2009.09.013] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2009] [Revised: 08/28/2009] [Accepted: 09/05/2009] [Indexed: 12/12/2022]
Abstract
The important roles that carbohydrates play in biological processes and their potential application in diagnosis, therapeutics, and vaccine development have made them attractive synthetic targets. Despite ongoing challenges, tremendous progresses have been made in recent years for the synthesis of carbohydrates. The chemical glycosylation methods have become more sophisticated and the synthesis of oligosaccharides has become more predictable. Simplified one-pot glycosylation strategy and automated synthesis are increasingly used to obtain biologically important glycans. On the other hand, chemoenzymatic synthesis continues to be a powerful alternative for obtaining complex carbohydrates. This review highlights recent progress in chemical and chemoenzymatic synthesis of carbohydrates with a particular focus on the methods developed for the synthesis of oligosaccharides, polysaccharides, glycolipids, and glycosylated natural products.
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Affiliation(s)
- Saddam Muthana
- Department of Chemistry, One Shields Avenue, University of California, Davis, CA 95616, United States
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43
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Sun A, Zhang J, Li C, Meng H. Gas Phase Conversion of Carbon Tetrachloride to Alkyl Chlorides Catalyzed by Supported Ionic Liquids. CHINESE J CHEM 2009. [DOI: 10.1002/cjoc.200990293] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Yerneni CK, Pathak V, Pathak AK. Imidazolium cation supported solution-phase assembly of homolinear alpha(1-->6)-linked octamannoside: an efficient alternate approach for oligosaccharide synthesis. J Org Chem 2009; 74:6307-10. [PMID: 19624152 PMCID: PMC2888776 DOI: 10.1021/jo901169u] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An efficient, simple convergent assembly of a homolinear alpha(1-->6)-linked octamannosyl thioglycoside was obtained starting from imidazolium cation-tagged mannosyl fluoride and thiomannoside using block couplings. During chain elongation glycosylation reactions no column chromatographic purifications were used.
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Affiliation(s)
- Charu K. Yerneni
- Department of Chemistry; Western Illinois University, 1 University Circle, Macomb, IL 61455, USA
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45
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46
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Smoot JT, Demchenko AV. Oligosaccharide synthesis: from conventional methods to modern expeditious strategies. Adv Carbohydr Chem Biochem 2009; 62:161-250. [PMID: 19501706 DOI: 10.1016/s0065-2318(09)00005-5] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- James T Smoot
- Department of Chemistry and Biochemistry, University of Missouri, St. Louis, MO 63121, USA
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47
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Affiliation(s)
- Feng Cai
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
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48
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Shen W, Wang LM, Tian H, Tang J, Yu JJ. Brønsted acidic imidazolium salts containing perfluoroalkyl tails catalyzed one-pot synthesis of 1,8-dioxo-decahydroacridines in water. J Fluor Chem 2009. [DOI: 10.1016/j.jfluchem.2009.02.014] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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49
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HU R, LEI M, WEI H, WANG Y. Ionic liquid-H2O Resulting in a Highly Chemoselective Oxidation of Benzylic Alcohols in the Presence of Aliphatic Analogues Catalyzed by Immobilized TEMPO. CHINESE J CHEM 2009. [DOI: 10.1002/cjoc.200990096] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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50
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Aqueel MS, Pathak V, Pathak AK. Concise assembly of linear alpha(1-->6)-linked octamannan fluorescent probe. Tetrahedron Lett 2008; 49:7157-7160. [PMID: 20011026 PMCID: PMC2598757 DOI: 10.1016/j.tetlet.2008.09.164] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Synthesis of a fluorescently labelled (dansylated) linear alpha(1-->6)-linked octamannan, using glycosyl fluoride donors and thioglycosyl acceptors is described. A selective and convergent two-stage activation progression was executed to construct di-, tetra and octa-mannosyl thioglycosides in three glycosylation steps with excellent yield. Further a 5-N,N-Dimethylaminonaphthalene-1-sulfonamidoethyl (dansyl) group was coupled to 1-azidoethyl octamannosyl thioglycoside. Global deprotection of the coupled product afforded the desired dansylated homo-linear alpha(1-->6)-linked octamannan.
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Affiliation(s)
- Mohammad S. Aqueel
- Department of Chemistry, Western IllinoisUniversity, Macomb, IL 61455, USA
| | - Vibha Pathak
- Department of Chemistry, Western IllinoisUniversity, Macomb, IL 61455, USA
| | - Ashish K. Pathak
- Department of Chemistry, Western IllinoisUniversity, Macomb, IL 61455, USA
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