Computational Discovery of Stable Transition-Metal Vinylidene Complexes

Migration of Condensed Aromatic Hydrocarbons During Alkyne-Vinylidene Rearrangements

Diarylacetylenes ArC≡CAr featuring condensed aromatic hydrocarbon fragments (Ar) such as naphthalene, anthracene, phenanthrene and pyrene were converted into vinylidene ligands by 1,2-migration reactions within the coordination sphere of half-sandwich complexes [MII(dppe)Cp]+ (MII = RuII, FeII). Comparison of the extent of conversion of the alkyne substrates to the vinylidene complexes [Ru{=C=CAr2}(dppe)Cp]+ with those obtained from acetylenes functionalized by smaller groups (H, CH3, Ph) show that the molecular volume (VM) of the migrating group and relief of steric congestion plays a role during the rearrangement process. Conversely, the H-atoms from the larger condensed ring aryl groups that are in close proximity to the migrating sites also have a significant influence on the efficacy and extent of the reaction by restricting access of the alkyne to the metal center, resulting in a less effective migration reaction. This combination of competing steric factors (acceleration due to relief of steric congestion and restricted access of the alkyne moiety to the reaction site) is exemplified by the facile migration of 1-pyryl entities and the low yields of vinylidene products formed from 1,2-bis(9-anthryl)acetylene.

Sustainable and practical formation of carbon-carbon and carbon-heteroatom bonds employing organo-alkali metal reagents

Metal-catalysed cross-coupling reactions are amongst the most widely used methods to directly construct new bonds. In this connection, sustainable and practical protocols, especially transition metal-catalysed cross-coupling reactions, have become the focus in many aspects of synthetic chemistry due to their high efficiency and atom economy. This review summarises recent advances from 2012 to 2022 in the formation of carbon-carbon bonds and carbon-heteroatom bonds by employing organo-alkali metal reagents.

Selectivity, Speciation, and Substrate Control in the Gold-Catalyzed Coupling of Indoles and Alkynes

A convenient and mild protocol for the gold-catalyzed intermolecular coupling of substituted indoles with carbonyl-functionalized alkynes to give vinyl indoles is reported. This reaction affords 3-substituted indoles in high yield, and in contrast to the analogous reactions with simple alkynes which give bisindolemethanes, only a single indole is added to the alkyne. The protocol is robust and tolerates substitution at a range of positions of the indole and the use of ester-, amide-, and ketone-substituted alkynes. The use of 3-substituted indoles as substrates results in the introduction of the vinyl substituent at the 2-position of the ring. A combined experimental and computational mechanistic study has revealed that the gold catalyst has a greater affinity to the indole than the alkyne, despite the carbon–carbon bond formation step proceeding through an η²(π)-alkyne complex, which helps to explain the stark differences between the intra- and intermolecular variants of the reaction. This study also demonstrated that the addition of a second indole to the carbonyl-containing vinyl indole products is both kinetically and thermodynamically less favored than in the case of more simple alkynes, providing an explanation for the observed selectivity. Finally, a highly unusual gold-promoted alkyne dimerization reaction to form a substituted gold pyrylium salt has been identified and studied in detail.

(Z)-Selective Hydroboration of Terminal Alkynes Catalyzed by a PSP-Pincer Rhodium Complex

A highly (Z)-selective hydroboration of terminal alkynes was achieved using a thioxanthene-based PSP-pincer rhodium catalyst. This hydroboration exhibited good chemoselectivity toward alkynes over carbonyl compounds such as ketones and aldehydes. The mechanistic studies indicated the involvement of rhodium-vinylidene intermediates, and the high (Z)-selectivity could be attributed to the rigid and electron-rich nature of the PSP-rhodium catalyst.

Computational Discovery of Transition-metal Complexes: From High-throughput Screening to Machine Learning

Transition-metal complexes are attractive targets for the design of catalysts and functional materials. The behavior of the metal-organic bond, while very tunable for achieving target properties, is challenging to predict and necessitates searching a wide and complex space to identify needles in haystacks for target applications. This review will focus on the techniques that make high-throughput search of transition-metal chemical space feasible for the discovery of complexes with desirable properties. The review will cover the development, promise, and limitations of "traditional" computational chemistry (i.e., force field, semiempirical, and density functional theory methods) as it pertains to data generation for inorganic molecular discovery. The review will also discuss the opportunities and limitations in leveraging experimental data sources. We will focus on how advances in statistical modeling, artificial intelligence, multiobjective optimization, and automation accelerate discovery of lead compounds and design rules. The overall objective of this review is to showcase how bringing together advances from diverse areas of computational chemistry and computer science have enabled the rapid uncovering of structure-property relationships in transition-metal chemistry. We aim to highlight how unique considerations in motifs of metal-organic bonding (e.g., variable spin and oxidation state, and bonding strength/nature) set them and their discovery apart from more commonly considered organic molecules. We will also highlight how uncertainty and relative data scarcity in transition-metal chemistry motivate specific developments in machine learning representations, model training, and in computational chemistry. Finally, we will conclude with an outlook of areas of opportunity for the accelerated discovery of transition-metal complexes.

Building a Toolbox for the Analysis and Prediction of Ligand and Catalyst Effects in Organometallic Catalysis

Computers have become closely involved with most aspects of modern life, and these developments are tracked in the chemical sciences. Recent years have seen the integration of computing across chemical research, made possible by investment in equipment, software development, improved networking between researchers, and rapid growth in the application of predictive approaches to chemistry, but also a change of attitude rooted in the successes of computational chemistry-it is now entirely possible to complete research projects where computation and synthesis are cooperative and integrated, and work in synergy to achieve better insights and improved results. It remains our ambition to put computational prediction before experiment, and we have been working toward developing the key ingredients and workflows to achieve this.The ability to precisely tune selectivity along with high catalyst activity make organometallic catalysts using transition metal (TM) centers ideal for high-value-added transformations, and this can make them appealing for industrial applications. However, mechanistic variations of TM-catalyzed reactions across the vast chemical space of different catalysts and substrates are not fully explored, and such an exploration is not feasible with current resources. This can lead to complete synthetic failures when new substrates are used, but more commonly we see outcomes that require further optimization, such as incomplete conversion, insufficient selectivity, or the appearance of unwanted side products. These processes consume time and resources, but the insights and data generated are usually not tied to a broader predictive workflow where experiments test hypotheses quantitatively, reducing their impact.These failures suggest at least a partial deviation of the reaction pathway from that hypothesized, hinting at quite complex mechanistic manifolds for organometallic catalysts that are affected by the combination of input variables. Mechanistic deviation is most likely when challenging multifunctional substrates are being used, and the quest for so-called privileged catalysts is quickly replaced by a need to screen catalyst libraries until a new "best" match between the catalyst and substrate can be identified and the reaction conditions can be optimized. As a community we remain confined to broad interpretations of the substrate scope of new catalysts and focus on small changes based on idealized catalytic cycles rather than working toward a "big data" view of organometallic homogeneous catalysis with routine use of predictive models and transparent data sharing.Databases of DFT-calculated steric and electronic descriptors can be built for such catalysts, and we summarize here how these can be used in the mapping, interpretation, and prediction of catalyst properties and reactivities. Our motivation is to make these databases useful as tools for synthetic chemists so that they challenge and validate quantitative computational approaches. In this Account, we demonstrate their application to different aspects of catalyst design and discovery and their integration with computational mechanistic studies and thus describe the progress of our journey toward truly predictive models in homogeneous organometallic catalysis.

Synthesis of a diferrocenylvinylidene complex by migration of a ferrocenyl substituent

The synthesis of the first diferrocenyl vinylidene complex is reported via migration of a ferrocenyl group along an unsaturated CC bond. Bis(alkynes) with phenyl and ferrocenyl groups in various positions gave bimetallic bis(vinylidene) complexes.

DFT calculations bring insight to internal alkyne-to-vinylidene transformations at rhodium PNP- and PONOP-pincer complexes

Through DFT calculations, the equilibrium between Rh–alkyne and Rh–vinylidene species of PXNXP pincer ligated Rh cationic complexes is shown to be tuned by the P–Rh–P bite angle, which in turn is dictated by the nature of the X moiety of the pincer ligand.

Nickel-Catalyzed Anionic Cross-Coupling Reaction of Lithium Sulfonimidoyl Alkylidene Carbenoids With Organolithiums

The mechanistic platform for a novel nickel0 -catalyzed anionic cross-coupling reaction (ACCR) of lithium sulfonimidoyl alkylidene carbenoids (metalloalkenyl sulfoximines) with organometallic reagents is reported herein, affording substituted alkenylmetals and lithium sulfinamides. The Ni0 -catalyzed ACCR of three different types of metalloalkenyl sulfoximines, including acyclic, axially chiral and exocyclic derivatives, with sp2 organolithiums and sp2 and sp3 Grignard reagents has been studied. The ACCR of metalloalkenyl sulfoximines with PhLi in the presence of the Ni0 -catalyst and precatalyst Ni(PPh3 )2 Cl2 afforded alkenyllithiums, under inversion of configuration at the C atom and complete retention at the S atom. In a combination of experimental and DFT studies, we propose a catalytic cycle of the Ni0 -catalyzed ACCR of lithioalkenyl sulfoximines. Computational studies reveal two distinctive pathways of the ACCR, depending on whether a phosphine or 1,5-cyclooctadiene (COD) is the ligand of the Ni atom. They rectify the underlying importance of forming the key Ni0 -vinylidene intermediate through an indispensable electron-rich Ni0 -center coordinated by phosphine ligands. Fundamentally, we present a mechanistic study in controlling the diastereoselectivity of the alkenyllithium formation via the key lithium sulfinamide coordinated Ni0 -vinylidene complex, which consequently avoids an unselective formation of an alkylidene carbene Ni-complex and ultimately racemic alkenyllithium.

Computational mapping of redox-switchable metal complexes based on ferrocene derivatives

The properties of redox-switchable metal complexes have been captured with DFT-calculated parameters and processed into a map of chemical space, highlighting the effects of varying metals, donors, linkers and substituents in both accessible ferrocene oxidation states.

Computational study of Ru-catalyzed cycloisomerization of 2-alkynylanilides

The reaction mechanism of Ru-catalyzed cycloisomerization of 2-alkynylanilides to 3-substituted indole or 2-substituted indole was analyzed at the B3LYP level of density functional theory. The solvation effect of the system was also considered by SMD model. The calculation results show that the reaction system first forms a ruthenium π-alkyne complex. On the one hand, the cyclization reaction of the amino group and the alkyne carbon in the reaction precursor complex directly forms the 2-substituted indole product. On the other hand, the benzene ring in the reaction complex undergoes 1,2-carbon migration on the C≡C triple bond to form the vinylidene complex. After cyclization and hydrogen transfer, the catalyst is regenerated to obtain 3-substituted indole product. The latter reaction process has relatively lower activation free energy and is also the main reaction channel for this reaction, which is consistent with published experimental results. This study provides a reasonable reaction mechanism and effective experimental supplement.

Gold-alkynyls in catalysis: alkyne activation, gold cumulenes and nuclearity

The use of cationic gold(i) species in the activation of substrates containing C[triple bond, length as m-dash]C bonds has become a valuable tool for synthetic chemists. Despite the seemingly simple label of 'alkyne activation', numerous patterns of reactivity and product structure are observed in systems employing related substrates and catalysts. The complications of mechanistic determination are compounded as the number of implicated gold(i) centres involved in catalysis increases and debate about the bonding in proposed intermediates clouds the number and importance of potential reaction pathways. This perspective aims to illustrate some of the principles underpinning gold-alkynyl interactions whilst highlighting some of the contentious areas in the field and offering some insight into other, often ignored, mechanistic possibilities based on recent findings.

Ruthenium-Catalyzed Cycloisomerization of 2-Alkynylanilides: Synthesis of 3-Substituted Indoles by 1,2-Carbon Migration

We developed ruthenium-catalyzed cycloisomerization of alkynylanilides that gave 3-substituted indoles in high yields. The reaction proceeded via the disubstituted vinylidene ruthenium complex that was formed by the 1,2-carbon migration.

Designing bifunctional alkene isomerization catalysts using predictive modelling

Optimised isomerisation catalysts are found using an iterative approach combining experimental studies and descriptor modelling.

Access to novel fluorovinylidene ligands via exploitation of outer-sphere electrophilic fluorination: new insights into C–F bond formation and activation

Metal fluorovinylidene complexes have been synthesised for the first time by direct electrophilic fluorination of metal alkynyls.

Reactions of alkynes with cis-RuCl2(dppm)2: exploring the interplay of vinylidene, alkynyl and η(3)-butenynyl complexes

Reactions of cis-RuCl2(dppm)2 with various terminal alkynes, of the type HC≡CC6H4-4-R (1 equiv.), in the presence of TlBF4 have resulted in the formation of cationic vinylidene complexes trans-[RuCl(=C=CHC6H4-4-R)(dppm)2]BF4 ([1]BF4). These complexes can be isolated, or treated in situ with a suitable base (Proton Sponge, 1,8-bis(dimethylamino)naphthalene) to yield the mono-alkynyl complexes trans-RuCl(C≡CC6H4-4-R)(dppm)2 (2). Through similar reactions between cis-RuCl2(dppm)2 with 2 equiv. of alkyne, TlBF4 and base, trans-bis(alkynyl) complexes, trans-Ru(C≡CC6H4-4-R)2(dppm)2 (3), can be isolated when R is an electron withdrawing substituent (R = NO2, COOMe, C≡CSiMe3), whereas reactions with alkynes bearing electron donating substituents (R = OMe and Me) form cationic η(3)-butenynyl complexes [Ru(η(3)-{HC(C6H4-4-R)=CC≡CC6H4-4-R})(dppm)2](+) ([4](+)). This work highlights the importance of the electronic character of the alkyne in influencing product outcome.

Dispersion, solvent and metal effects in the binding of gold cations to alkynyl ligands: implications for Au(I) catalysis

The coordination modes of the [Au(PPh3)](+) cation to metal alkynyl complexes have been investigated. On addition to ruthenium, a vinylidene complex, [Ru(η(5)-C5H5)(PPh3)2([double bond, length as m-dash]C[double bond, length as m-dash]CPh{AuPPh3})](+), is obtained while addition to a gold(iii) compound gives di- and trinuclear gold complexes depending on the conditions employed. In the trinuclear species, a gold(i) cation is sandwiched between two gold(iii) alkynyl complexes, suggesting that coordination of multiple C-C triple bonds to gold is facile.

Lost in chemical space? Maps to support organometallic catalysis

Descriptors calculated from molecular structures have been used to map different areas of chemical space. A number of applications for such maps can be identified, ranging from the fine-tuning and optimisation of catalytic activity and compound properties to virtual screening of novel compounds, as well as the exhaustive exploration of large areas of chemical space by automated combinatorial building and evaluation. This review focuses on organometallic catalysis, but also touches on other areas where similar approaches have been used, with a view to assessing the extent to which chemical space has been explored.

Graphical abstract

Competition between vinylidene rearrangement and 1,2-insertion of carbon-disubstituted internal alkynes at a Cp*Ir(iii) complex

Competition between vinylidene rearrangement/1,1-insertion and 1,2-alkyne insertion into the Ir–Ar bond of [Cp*Ir(ppy-F₄)]⁺ was observed on reaction with diarylacetylenes. The former process afforded the 9-membered iridacycle via the subsequent 1,4-Ir migration.