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Ess DH. Quasiclassical Direct Dynamics Trajectory Simulations of Organometallic Reactions. Acc Chem Res 2021; 54:4410-4422. [PMID: 34761673 DOI: 10.1021/acs.accounts.1c00575] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Homogeneous metal-mediated organometallic reactions represent a very large and diverse reaction class. Density functional theory calculations are now routinely carried out and reported for analyzing organometallic mechanisms and reaction pathways. While density functional theory calculations are extremely powerful to understand the energy and structure of organometallic reactions, there are several assumptions in their use and interpretation to define reaction mechanisms and to analyze reaction selectivity. Almost always it is assumed that potential energy structures calculated with density functional theory adequately describe mechanisms and selectivity within the framework of statistical theories, for example, transition state theory and RRKM theory. However, these static structures and corresponding energy landscapes do not provide atomic motion information during reactions that could reveal nonstatistical intermediates without complete intramolecular vibrational redistribution and nonintrinsic reaction coordinate (non-IRC) pathways. While nonstatistical intermediates and non-IRC reaction pathways are now relatively well established for organic reactions, these dynamic effects have heretofore been highly underexplored in organometallic reactions. Through a series of quasiclassical density functional theory direct dynamics trajectory studies, my group has recently demonstrated that dynamic effects occur in a variety of fundamental organometallic reactions, especially bond activation reactions. For example, in the C-H activation reaction between methane and [Cp*(PMe3)IrIII(CH3)]+, while the density functional theory energy landscape showed a two-step oxidative cleavage and reductive coupling mechanism, trajectories revealed a mixture of this two-step mechanism and a dynamic one-step mechanism that skipped the [Cp*(PMe3)IrV(H)(CH3)2]+ intermediate. This study also showed that despite a methane σ-complex being located on the density functional theory surface before oxidative cleavage and after reductive coupling, this intermediate is always skipped and should not be considered an intermediate during reactive trajectories. For non-IRC reaction pathways, quasiclassical direct dynamics trajectories showed that for the isomerization of [Tp(NO)(PMe3)W(η2-benzene)] to [Tp(NO)(PMe3)W(H)(Ph)], there are many dynamic reaction pathway connections due to a relatively flat energy landscape and π coordination is not necessary for C-H bond activation through oxidative cleavage. Trajectories also showed that dynamic effects are important in selectivity for ethylene C-H activation versus π coordination in reaction with Cp(PMe3)2Re, and trajectories provide a more quantitative model of selectivity than transition state theory. Quasiclassical trajectories examining Au-catalyzed monoallylic diol cyclizations showed dynamic coupling of several reaction steps that include alkoxylation π bond addition, proton shuttling, and water elimination reaction steps. Overall, these studies highlight the need to use direct dynamics trajectory simulations to consider atomic motion during reactions to understand organometallic reaction mechanisms and selectivity.
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Affiliation(s)
- Daniel H. Ess
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
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2
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Zheng C. Divergent Pathways and Dynamic Effects of Intramolecular Hydride Transfer Reactions Mediated by Cp*M(
III
) Complexes (M = Co, Rh, Ir)
†. CHINESE J CHEM 2020. [DOI: 10.1002/cjoc.202000253] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Chao Zheng
- State Key Laboratory of Organometallic Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences 345 Lingling Lu Shanghai 200032 China
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3
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Teynor MS, Carlsen R, Ess DH. Relationship Between Energy Landscape Shape and Dynamics Trajectory Outcomes for Methane C–H Activation by Cationic Cp*(PMe3)Ir/Rh/Co(CH3). Organometallics 2020. [DOI: 10.1021/acs.organomet.0c00108] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Matthew S. Teynor
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Ryan Carlsen
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Daniel H. Ess
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
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Wheeler JI, Carlsen R, Ess DH. Mechanistic molecular motion of transition-metal mediated β-hydrogen transfer: quasiclassical trajectories reveal dynamically ballistic, dynamically unrelaxed, two step, and concerted mechanisms. Dalton Trans 2020; 49:7747-7757. [DOI: 10.1039/d0dt01687j] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Quasiclassical direct dynamics reveal new dynamical mechanisms for metal-alkyl to ethylene β-hydrogen transfer.
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Affiliation(s)
- Josh I. Wheeler
- Department of Chemistry and Biochemistry
- Brigham Young University
- Provo
- USA
| | - Ryan Carlsen
- Department of Chemistry and Biochemistry
- Brigham Young University
- Provo
- USA
| | - Daniel H. Ess
- Department of Chemistry and Biochemistry
- Brigham Young University
- Provo
- USA
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5
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Carlsen R, Jenkins JR, Huang TCJ, Pugh SL, Ess DH. Paddle Ball Dynamics during Conversion of a Rh–Methyl Hydride Complex to a Rh–Methane σ-Complex through Reductive Coupling. Organometallics 2019. [DOI: 10.1021/acs.organomet.8b00936] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ryan Carlsen
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Jordan R. Jenkins
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Tsung-Chiang Johnny Huang
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Samuel L. Pugh
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Daniel H. Ess
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
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6
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Carlsen R, Wohlgemuth N, Carlson L, Ess DH. Dynamical Mechanism May Avoid High-Oxidation State Ir(V)-H Intermediate and Coordination Complex in Alkane and Arene C-H Activation by Cationic Ir(III) Phosphine. J Am Chem Soc 2018; 140:11039-11045. [PMID: 30066561 DOI: 10.1021/jacs.8b05238] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Organometallic reaction mechanisms are assumed to be appropriately described by minimum energy pathways mapped out by density functional theory calculations. For the two-step oxidative addition/reductive elimination mechanism for C-H activation of methane and benzene by cationic Cp*(PMe3)IrIII(CH3), we report quasiclassical direct dynamics simulations that demonstrate the IrV-H intermediate is bypassed in a significant amount of productive trajectories initiated from vibrationally averaged velocity distributions of oxidative addition transition states. This organometallic dynamical mechanism is akin to the σ-bond metathesis pathway but occurs on the oxidative addition/reductive elimination energy surface and blurs the line between two- and one-step mechanisms. Quasiclassical trajectories also reveal that the momentum of crossing the reductive elimination structure always induces complete alkane and arene dissociation from the Ir metal center, skipping weak C-H σ and π coordination complexes. This suggests that these weak coordination complexes after reductive elimination are not necessarily on the reaction pathway and likely result from a solvent cage.
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Affiliation(s)
- Ryan Carlsen
- Department of Chemistry and Biochemistry , Brigham Young University , Provo , Utah 84602 , United States
| | - Nathan Wohlgemuth
- Department of Chemistry and Biochemistry , Brigham Young University , Provo , Utah 84602 , United States
| | - Lily Carlson
- Department of Chemistry and Biochemistry , Brigham Young University , Provo , Utah 84602 , United States
| | - Daniel H Ess
- Department of Chemistry and Biochemistry , Brigham Young University , Provo , Utah 84602 , United States
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7
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Yu SY, Ren P, Zheng HM, Zhang CG. Copolymerization Mechanisms of Propylene and Norbornadiene Catalyzed by Zirconocene Complexes: A Density Functional Theory Study. B KOREAN CHEM SOC 2018. [DOI: 10.1002/bkcs.11399] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Shu-Yuan Yu
- Department of Chemistry and Material Science; Langfang Teachers University; Langfang 065000 China
| | - Ping Ren
- Department of Chemistry and Material Science; Langfang Teachers University; Langfang 065000 China
| | - Hui-Min Zheng
- Department of Chemistry and Material Science; Langfang Teachers University; Langfang 065000 China
| | - Cheng-Gen Zhang
- Department of Chemistry and Material Science; Langfang Teachers University; Langfang 065000 China
- College of Chemistry and Chemical Engineering; University of Chinese Academy of Sciences; Beijing 100049 China
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Luo G, Luo Y, Hou Z, Qu J. Intermetallic Cooperation in Olefin Polymerization Catalyzed by a Binuclear Samarocene Hydride: A Theoretical Study. Organometallics 2016. [DOI: 10.1021/acs.organomet.6b00018] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Gen Luo
- State
Key Laboratory of Fine Chemicals, School of Pharmaceutical Science
and Technology, Dalian University of Technology, Dalian 116024, People’s Republic of China
| | - Yi Luo
- State
Key Laboratory of Fine Chemicals, School of Pharmaceutical Science
and Technology, Dalian University of Technology, Dalian 116024, People’s Republic of China
| | - Zhaomin Hou
- State
Key Laboratory of Fine Chemicals, School of Pharmaceutical Science
and Technology, Dalian University of Technology, Dalian 116024, People’s Republic of China
- Organometallic
Chemistry Laboratory and Center for Sustainable Resource Science, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Jingping Qu
- State
Key Laboratory of Fine Chemicals, School of Pharmaceutical Science
and Technology, Dalian University of Technology, Dalian 116024, People’s Republic of China
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Kovács G, Stirling A, Lledós A, Ujaque G. The nature of [PdCl(2)(C(2)H(4))(H(2)O)] as an active species in the Wacker process: new insights from ab initio molecular dynamics simulations. Chemistry 2012; 18:5612-9. [PMID: 22461021 DOI: 10.1002/chem.201102138] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2011] [Revised: 11/24/2011] [Indexed: 11/12/2022]
Abstract
First-principles molecular dynamics coupled with metadynamics have been used to gain a deeper insight into the reaction mechanism of the Wacker process by determining the nature of the active species. An explicit and dynamic representation of the aqueous solvent, which was essential for modeling this reaction, was efficiently included into the simulations. Prompted by our earlier results, which showed that the configuration of the catalytically active species [PdCl(2)(H(2)O)(C(2)H(4))] was crucial in the subsequent steps of the Wacker process, herein we focused on the preceding equilibria that led to the formation of both the cis and trans isomers. Starting from the initial catalyst, [PdCl(4)](2-), the free-energy barriers for the forward and backward reactions were calculated. These results confirmed the relevance of the trans intermediate in the reaction mechanism, whilst conversely, they showed that the cis configuration played no role in it. This sole participation of the trans intermediate has some very important implications; besides the mechanistic interpretation of the initial steps in the Wacker reaction mechanism, the analysis of these equilibria provides additional information about the chemical nature of these ligand-substitution processes.
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Affiliation(s)
- Gábor Kovács
- Unitat de Química Física, Departament de Química, Universitat Autònoma de Barcelona, Catalonia, Spain
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Rowley CN, Woo TK. Counteranion Effects on the Zirconocene Polymerization Catalyst Olefin Complex from QM/MM Molecular Dynamics Simulations. Organometallics 2011. [DOI: 10.1021/om101188t] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Christopher N. Rowley
- Centre for Catalysis Research and Innovation, Department of Chemistry, D’Iorio Hall, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Tom K. Woo
- Centre for Catalysis Research and Innovation, Department of Chemistry, D’Iorio Hall, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
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11
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Bochmann M. The Chemistry of Catalyst Activation: The Case of Group 4 Polymerization Catalysts. Organometallics 2010. [DOI: 10.1021/om1004447] [Citation(s) in RCA: 296] [Impact Index Per Article: 21.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Manfred Bochmann
- Wolfson Materials and Catalysis Centre, School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
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12
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Comas-Vives A, Stirling A, Lledós A, Ujaque G. The Wacker Process: Inner- or Outer-Sphere Nucleophilic Addition? New Insights from Ab Initio Molecular Dynamics. Chemistry 2010; 16:8738-47. [DOI: 10.1002/chem.200903522] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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13
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Rowley CN, Woo TK. New shooting algorithms for transition path sampling: Centering moves and varied-perturbation sizes for improved sampling. J Chem Phys 2009; 131:234102. [DOI: 10.1063/1.3274203] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Wang J, Xu H, Gao H, Su CY, Zhao C, Phillips DL. DFT Study on the Mechanism of Amides to Aldehydes Using Cp2Zr(H)Cl. Organometallics 2009. [DOI: 10.1021/om900371u] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Juping Wang
- MOE Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
- School of Pharmacy, Guangdong Pharmaceutical University, People's Republic of China
| | - Huiying Xu
- MOE Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
| | - Hui Gao
- MOE Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
| | - Cheng-Yong Su
- MOE Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
| | - Cunyuan Zhao
- MOE Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
| | - David Lee Phillips
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, People's Republic of China
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Rowley CN, Woo TK. Computational design of ruthenium hydride olefin-hydrogenation catalysts containing hemilabile ligands,. CAN J CHEM 2009. [DOI: 10.1139/v09-077] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Three ruthenium hydridocarbonyl complexes containing bidentate hemilabile ligands have been evaluated as possible catalysts for the H2 hydrogenation of olefins. Our previous investigations of the mainstay hydridoruthenium catalyst, RuHCl(CO)(PR3)2 (1), indicated that the rate-limiting olefin-insertion barrier was increased by the need for an H2 molecule to act as a stabilizing two-electron donor. Using density functional theory (DFT) calculations, we have determined that a P,N phosphane-oxazoline would be suitable for stabilizing the metal center of the complex RuHCl(CO)(PiPr3)(DZ), where DZ is a neutral bidentate hemilable ligand. In the reaction catalyzed by this complex, the olefin insertion occurs before the coordination of H2, avoiding the entropic penalty of coordinating H2. We predict that the phosphane-oxazoline containing catalyst will have higher activity than 1 and a different rate-law, zero-order in [H2]. The oxazoline increases the strength of coordination of the ethylene due to stronger back-donation from destabilized Ru d-orbitals to the ethylene π* molecular orbital.
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Affiliation(s)
- Christopher N. Rowley
- Centre for Catalysis Research and Innovation, Department of Chemistry, University of Ottawa, Ottawa, ON K1N 6N5, Canada
| | - Tom K. Woo
- Centre for Catalysis Research and Innovation, Department of Chemistry, University of Ottawa, Ottawa, ON K1N 6N5, Canada
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