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González Gutiérrez PA, Fuentes-Bazan S, Di Vincenzo V, Berazaín-Iturralde R, Borsch T. The diversification of Caribbean Buxus in time and space: elevated speciation rates in lineages that accumulate nickel and spreading to other islands from Cuba in non-obligate ultramafic species. ANNALS OF BOTANY 2023; 131:1133-1147. [PMID: 37208295 PMCID: PMC10457035 DOI: 10.1093/aob/mcad063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 05/18/2023] [Indexed: 05/21/2023]
Abstract
BACKGROUND AND AIMS The genus Buxus has high levels of endemism in the Caribbean flora, with ~50 taxa. In Cuba, 82 % grow on ultramafic substrates and 59 % are nickel (Ni) accumulators or Ni hyperaccumulators. Hence it is an ideal model group to study if this diversification could be related to adaptation to ultramafic substrates and to Ni hyperaccumulation. METHODS We generated a well-resolved molecular phylogeny, including nearly all of the Neotropical and Caribbean Buxus taxa. To obtain robust divergence times we tested for the effects of different calibration scenarios, and we reconstructed ancestral areas and ancestral character states. Phylogenetic trees were examined for trait-independent shifts in diversification rates and we used multi-state models to test for state-dependent speciation and extinction rates. Storms could have contributed to Cuba acting as a species pump and to Buxus reaching other Caribbean islands and northern South America'. KEY RESULTS We found a Caribbean Buxus clade with Mexican ancestors, encompassing three major subclades, which started to radiate during the middle Miocene (13.25 Mya). Other Caribbean islands and northern South America were reached from ~3 Mya onwards. CONCLUSIONS An evolutionary scenario is evident in which Buxus plants able to grow on ultramafic substrates by exaptation became ultramafic substrate endemics and evolved stepwise from Ni tolerance through Ni accumulation to Ni hyperaccumulation, which has triggered species diversification of Buxus in Cuba. Storms could have contributed to Cuba acting as a species pump and to Buxus reaching other Caribbean islands and northern South America'.
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Affiliation(s)
- Pedro A González Gutiérrez
- Centro de Investigaciones y Servicios Ambientales de Holguín, Calle 18 s/n, entre 1ª y Maceo, Holguín 80100, Cuba
| | - Susy Fuentes-Bazan
- Institut für Biologie der Freien Universität Berlin. Altensteinstraße 6, 14195 Berlin, Germany
- Botanischer Garten und Botanisches Museum Berlin-Dahlem, Königin-Luise-Straße 6-8, 14195 Berlin, Germany
| | - Vanessa Di Vincenzo
- Institut für Biologie der Freien Universität Berlin. Altensteinstraße 6, 14195 Berlin, Germany
- Botanischer Garten und Botanisches Museum Berlin-Dahlem, Königin-Luise-Straße 6-8, 14195 Berlin, Germany
| | | | - Thomas Borsch
- Institut für Biologie der Freien Universität Berlin. Altensteinstraße 6, 14195 Berlin, Germany
- Botanischer Garten und Botanisches Museum Berlin-Dahlem, Königin-Luise-Straße 6-8, 14195 Berlin, Germany
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2
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Mustafa A, Zulfiqar U, Mumtaz MZ, Radziemska M, Haider FU, Holatko J, Hammershmiedt T, Naveed M, Ali H, Kintl A, Saeed Q, Kucerik J, Brtnicky M. Nickel (Ni) phytotoxicity and detoxification mechanisms: A review. CHEMOSPHERE 2023; 328:138574. [PMID: 37019403 DOI: 10.1016/j.chemosphere.2023.138574] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 03/28/2023] [Accepted: 03/31/2023] [Indexed: 06/19/2023]
Abstract
Scientists studying the environment, physiology, and biology have been particularly interested in nickel (Ni) because of its dual effects (essentiality and toxicity) on terrestrial biota. It has been reported in some studies that without an adequate supply of Ni, plants are unable to finish their life cycle. The safest Ni limit for plants is 1.5 μg g-1, while the limit for soil is between 75 and 150 μg g-1. Ni at lethal levels harms plants by interfering with a variety of physiological functions, including enzyme activity, root development, photosynthesis, and mineral uptake. This review focuses on the occurrence and phytotoxicity of Ni with respect to growth, physiological and biochemical aspects. It also delves into advanced Ni detoxification mechanisms such as cellular modifications, organic acids, and chelation of Ni by plant roots, and emphasizes the role of genes involved in Ni detoxification. The discussion has been carried out on the current state of using soil amendments and plant-microbe interactions to successfully remediate Ni from contaminated sites. This review has identified potential drawbacks and difficulties of various strategies for Ni remediation, discussed the importance of these findings for environmental authorities and decision-makers, and concluded by noting the sustainability concerns and future research needs regarding Ni remediation.
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Affiliation(s)
- Adnan Mustafa
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00, Brno, Czech Republic; Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, Brno, 61300, Brno, Czech Republic; Institute for Environmental Studies, Faculty of Science, Charles University in Prague, Benatska 2, CZ12800, Praha, Czech Republic.
| | - Usman Zulfiqar
- Department of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, 63100, Pakistan
| | - Muhammad Zahid Mumtaz
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Main Campus, Defense Road, Lahore, 54000, Pakistan
| | - Maja Radziemska
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, Brno, 61300, Brno, Czech Republic; Institute of Environmental Engineering, Warsaw University of Life Sciences, 159 Nowoursynowska,02-776, Warsaw, Poland
| | - Fasih Ullah Haider
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, 510650, Guangzhou, China
| | - Jiri Holatko
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, Brno, 61300, Brno, Czech Republic; Agrovyzkum Rapotin, Ltd., Vyzkumniku 267, 788 13, Rapotin, Czech Republic
| | - Tereza Hammershmiedt
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, Brno, 61300, Brno, Czech Republic
| | - Muhammad Naveed
- Institute of Soil and Environmental Science, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Hassan Ali
- Institute of Soil and Environmental Science, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Antonin Kintl
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, Brno, 61300, Brno, Czech Republic; Agricultural Research, Ltd., 664 4, Troubsko, Czech Republic
| | - Qudsia Saeed
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00, Brno, Czech Republic
| | - Jiri Kucerik
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00, Brno, Czech Republic
| | - Martin Brtnicky
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00, Brno, Czech Republic; Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, Brno, 61300, Brno, Czech Republic.
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3
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Ghafoori M, Shariati M, van der Ent A, Baker AJM. Nickel hyperaccumulation, elemental profiles and agromining potential of three species of Odontarrhena from the ultramafics of Western Iran. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2022; 25:381-392. [PMID: 35788162 DOI: 10.1080/15226514.2022.2086213] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The profiles of trace and major elements in three Odontarrhena species from the ultramafics of Western Iran (O. callichroa, O. penjwinensis and O. inflata) were evaluated to provide detailed information on their soil-plant relationships and potentials for agromining. The mean concentrations of Ni in leaf dry matter of these three species were 877, 3,270 and 2,720 mg kg-1, respectively. The mean concentrations of total soil Ni at sites Mazi Ban, Kamyaran and Ghala Ga were 1,470, 2,480, 1,030 mg kg-1, respectively. The Bioconcentration Factor (BCF) for Ni was >1 in O. penjwinensis and O. inflata, but not in O. callichroa. A positive relationship between shoot Ni and soil pH was found for all three species. They display Ni hyperaccumulation in the leaves, but with pronounced variation in the Ni concentrations attained. Odontarrhena penjwinensis emerged as the most promising potential candidate for future Ni agromining. The progress made in this study will enable further consideration of the three Odontarrhena species, especially O. penjwinensis, for any future commercial Ni agromining of the serpentinic ultramafic soils in Western Iran.
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Affiliation(s)
- Mohammad Ghafoori
- Department of Plant and Animal Biology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran
| | - Mansour Shariati
- Department of Plant and Animal Biology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran
| | - Antony van der Ent
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane, Australia
| | - Alan J M Baker
- School of BioSciences, The University of Melbourne, Parkville, Australia
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4
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Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles. Nat Commun 2021; 12:4979. [PMID: 34404804 PMCID: PMC8370997 DOI: 10.1038/s41467-021-25256-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 07/21/2021] [Indexed: 01/26/2023] Open
Abstract
Relative contributions of pre-existing vs de novo genomic variation to adaptation are poorly understood, especially in polyploid organisms. We assess this in high resolution using autotetraploid Arabidopsis arenosa, which repeatedly adapted to toxic serpentine soils that exhibit skewed elemental profiles. Leveraging a fivefold replicated serpentine invasion, we assess selection on SNPs and structural variants (TEs) in 78 resequenced individuals and discover significant parallelism in candidate genes involved in ion homeostasis. We further model parallel selection and infer repeated sweeps on a shared pool of variants in nearly all these loci, supporting theoretical expectations. A single striking exception is represented by TWO PORE CHANNEL 1, which exhibits convergent evolution from independent de novo mutations at an identical, otherwise conserved site at the calcium channel selectivity gate. Taken together, this suggests that polyploid populations can rapidly adapt to environmental extremes, calling on both pre-existing variation and novel polymorphisms. Relative contributions of pre-existing versus de novo genomic variation to adaptation remain unclear. Here, the authors address this problem by examining the adaptation of autotetraploid Arabidopsis arenosa to serpentine soils and find that both types of variations contribute to rapid adaptation.
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5
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Kumar A, Jigyasu DK, Kumar A, Subrahmanyam G, Mondal R, Shabnam AA, Cabral-Pinto MMS, Malyan SK, Chaturvedi AK, Gupta DK, Fagodiya RK, Khan SA, Bhatia A. Nickel in terrestrial biota: Comprehensive review on contamination, toxicity, tolerance and its remediation approaches. CHEMOSPHERE 2021; 275:129996. [PMID: 33647680 DOI: 10.1016/j.chemosphere.2021.129996] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Revised: 02/12/2021] [Accepted: 02/15/2021] [Indexed: 06/12/2023]
Abstract
Nickel (Ni) has been a subject of interest for environmental, physiological, biological scientists due to its dual effect (toxicity and essentiality) in terrestrial biota. In general, the safer limit of Ni is 1.5 μg g-1 in plants and 75-150 μg g-1 in soil. Litreature review indicates that Ni concentrations have been estimated up to 26 g kg-1 in terrestrial, and 0.2 mg L-1 in aquatic resources. In case of vegetables and fruits, mean Ni content has been reported in the range of 0.08-0.26 and 0.03-0.16 mg kg-1. Considering, Ni toxicity and its potential health hazards, there is an urgent need to find out the suitable remedial approaches. Plant vascular (>80%) and cortical (<20%) tissues are the major sequestration site (cation exchange) of absorbed Ni. Deciphering molecular mechanisms in transgenic plants have immense potential for enhancing Ni phytoremediation and microbial remediation efficiency. Further, it has been suggested that integrated bioremediation approaches have a potential futuristic path for Ni decontamination in natural resources. This systematic review provides insight on Ni effects on terrestrial biota including human and further explores its transportation, bioaccumulation through food chain contamination, human health hazards, and possible Ni remediation approaches.
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Affiliation(s)
- Amit Kumar
- School of Hydrology and Water Resources, Nanjing University of Information Science and Technology, Nanjing, Jiangsu, 210044, China
| | - Dharmendra K Jigyasu
- Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, Assam, 785700, India.
| | - Amit Kumar
- Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, Assam, 785700, India.
| | - Gangavarapu Subrahmanyam
- Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, Assam, 785700, India.
| | - Raju Mondal
- Central Sericultural Germplasm Resources Centre (CSGRC), Central Silk Board, Ministry of Textiles, Thally Road, Hosur, Tamil Nadu, 635109, India.
| | - Aftab A Shabnam
- Central Muga Eri Research and Training Institute, Central Silk Board, Jorhat, Assam, 785700, India.
| | - M M S Cabral-Pinto
- Department of Geosciences, Geobiotec Research Centre, University of Aveiro, 3810-193 Aveiro, Portugal.
| | - Sandeep K Malyan
- Research Management and Outreach Division, National Institute of Hydrology, Jalvigyan Bhawan, Roorkee, Uttarakhand, 247667, India.
| | - Ashish K Chaturvedi
- Land and Water Management Research Group, Centre for Water Resources Development and Management, Kozhikode, Kerala, 673571, India.
| | - Dipak Kumar Gupta
- ICAR-Central Arid Zone Research Institute Regional Research Station Pali Marwar, Rajasthan, 342003, India.
| | - Ram Kishor Fagodiya
- Division of Irrigation and Drainage Engineering, ICAR-Central Soil Salinity Research Institute, Karnal, Haryana, 132001, India.
| | - Shakeel A Khan
- Centre for Environment Science and Climate Resilient Agriculture, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
| | - Arti Bhatia
- Centre for Environment Science and Climate Resilient Agriculture, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
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Pollard AJ, McCartha GL, Quintela-Sabarís C, Flynn TA, Sobczyk MK, Smith JAC. Intraspecific Variation in Nickel Tolerance and Hyperaccumulation among Serpentine and Limestone Populations of Odontarrhena serpyllifolia (Brassicaceae: Alysseae) from the Iberian Peninsula. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10040800. [PMID: 33921686 PMCID: PMC8073652 DOI: 10.3390/plants10040800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 03/29/2021] [Accepted: 04/15/2021] [Indexed: 06/12/2023]
Abstract
Odontarrhena serpyllifolia (Desf.) Jord. & Fourr. (=Alyssum serpyllifolium Desf.) occurs in the Iberian Peninsula and adjacent areas on a variety of soils including both limestone and serpentine (ultramafic) substrates. Populations endemic to serpentine are known to hyperaccumulate nickel, and on account of this remarkable phenotype have, at times, been proposed for recognition as taxonomically distinct subspecies or even species. It remains unclear, however, to what extent variation in nickel hyperaccumulation within this taxon merely reflects differences in the substrate, or whether the different populations show local adaptation to their particular habitats. To help clarify the physiological basis of variation in nickel hyperaccumulation among these populations, 3 serpentine accessions and 3 limestone accessions were cultivated hydroponically under common-garden conditions incorporating a range of Ni concentrations, along with 2 closely related non-accumulator species, Clypeola jonthlaspi L. and Alyssum montanum L. As a group, serpentine accessions of O. serpyllifolia were able to tolerate Ni concentrations approximately 10-fold higher than limestone accessions, but a continuous spectrum of Ni tolerance was observed among populations, with the least tolerant serpentine accession not being significantly different from the most tolerant limestone accession. Serpentine accessions maintained relatively constant tissue concentrations of Ca, Mg, K, and Fe across the whole range of Ni exposures, whereas in the limestone accessions, these elements fluctuated widely in response to Ni toxicity. Hyperaccumulation of Ni, defined here as foliar Ni concentrations exceeding 1g kg-1 of dry biomass in plants not showing significant growth reduction, occurred in all accessions of O. serpyllifolia, but the higher Ni tolerance of serpentine accessions allowed them to hyperaccumulate more strongly. Of the reference species, C. jonthlaspi responded similarly to the limestone accessions of O. serpyllifolia, whereas A. montanum displayed by far the lowest degree of Ni tolerance and exhibited low foliar Ni concentrations, which only exceeded 1 g kg-1 in plants showing severe Ni toxicity. The continuous spectrum of physiological responses among these accessions does not lend support to segregation of the serpentine populations of O. serpyllifolia as distinct species. However, the pronounced differences in degrees of Ni tolerance, hyperaccumulation, and elemental homeostasis observed among these accessions under common-garden conditions argues for the existence of population-level adaptation to their local substrates.
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Affiliation(s)
- A. Joseph Pollard
- Department of Biology, Furman University, Greenville, SC 29613, USA;
| | - Grace L. McCartha
- Department of Biology, Furman University, Greenville, SC 29613, USA;
- Department of Biological Sciences, Arkansas State University, Jonesboro, AR 72401, USA
| | - Celestino Quintela-Sabarís
- Department of Soil Science and Agricultural Chemistry, University of Santiago de Compostela, CP 15782 Santiago de Compostela, Spain;
| | - Thomas A. Flynn
- Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK; (T.A.F.); (M.K.S.)
- BSG Ecology Ltd., Worton Park, Worton OX29 4SX, UK
| | - Maria K. Sobczyk
- Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK; (T.A.F.); (M.K.S.)
- MRC Integrative Epidemiology Unit, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK
| | - J. Andrew C. Smith
- Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK; (T.A.F.); (M.K.S.)
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Rosatto S, Mariotti M, Romeo S, Roccotiello E. Root and Shoot Response to Nickel in Hyperaccumulator and Non-Hyperaccumulator Species. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10030508. [PMID: 33803420 PMCID: PMC7998499 DOI: 10.3390/plants10030508] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2021] [Revised: 03/06/2021] [Accepted: 03/06/2021] [Indexed: 05/04/2023]
Abstract
The soil-root interface is the micro-ecosystem where roots uptake metals. However, less than 10% of hyperaccumulators' rhizosphere has been examined. The present study evaluated the root and shoot response to nickel in hyperaccumulator and non-hyperaccumulator species, through the analysis of root surface and biomass and the ecophysiological response of the related aboveground biomass. Ni-hyperaccumulators Alyssoides utriculata (L.) Medik. and Noccaea caerulescens (J. Presl and C. Presl) F.K. Mey. and non-hyperaccumulators Alyssum montanum L. and Thlaspi arvense L. were grown in pot on Ni-spiked soil (0-1000 mg Ni kg-1, total). Development of root surfaces was analysed with ImageJ; fresh and dry root biomass was determined. Photosynthetic efficiency was performed by analysing the fluorescence of chlorophyll a to estimate the plants' physiological conditions at the end of the treatment. Hyperaccumulators did not show a Ni-dependent decrease in root surfaces and biomass (except Ni 1000 mg kg-1 for N. caerulescens). The non-hyperaccumulator A. montanum suffers metal stress which threatens plant development, while the excluder T. arvense exhibits a positive ecophysiological response to Ni. The analysis of the root system, as a component of the rhizosphere, help to clarify the response to soil nickel and plant development under metal stress for bioremediation purposes.
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Konečná V, Yant L, Kolář F. The Evolutionary Genomics of Serpentine Adaptation. FRONTIERS IN PLANT SCIENCE 2020; 11:574616. [PMID: 33391295 PMCID: PMC7772150 DOI: 10.3389/fpls.2020.574616] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Accepted: 11/23/2020] [Indexed: 06/12/2023]
Abstract
Serpentine barrens are among the most challenging settings for plant life. Representing a perfect storm of hazards, serpentines consist of broadly skewed elemental profiles, including abundant toxic metals and low nutrient contents on drought-prone, patchily distributed substrates. Accordingly, plants that can tolerate the challenges of serpentine have fascinated biologists for decades, yielding important insights into adaptation to novel ecologies through physiological change. Here we highlight recent progress from studies which demonstrate the power of serpentine as a model for the genomics of adaptation. Given the moderate - but still tractable - complexity presented by the mix of hazards on serpentine, these venues are well-suited for the experimental inquiry of adaptation both in natural and manipulated conditions. Moreover, the island-like distribution of serpentines across landscapes provides abundant natural replicates, offering power to evolutionary genomic inference. Exciting recent insights into the genomic basis of serpentine adaptation point to a partly shared basis that involves sampling from common allele pools available from retained ancestral polymorphism or via gene flow. However, a lack of integrated studies deconstructing complex adaptations and linking candidate alleles with fitness consequences leaves room for much deeper exploration. Thus, we still seek the crucial direct link between the phenotypic effect of candidate alleles and their measured adaptive value - a prize that is exceedingly rare to achieve in any study of adaptation. We expect that closing this gap is not far off using the promising model systems described here.
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Affiliation(s)
- Veronika Konečná
- Department of Botany, Faculty of Science, Charles University, Prague, Czechia
- Institute of Botany, The Czech Academy of Sciences, Pru˚honice, Czechia
| | - Levi Yant
- Future Food Beacon and School of Life Sciences, University of Nottingham, Nottingham, United Kingdom
| | - Filip Kolář
- Department of Botany, Faculty of Science, Charles University, Prague, Czechia
- Institute of Botany, The Czech Academy of Sciences, Pru˚honice, Czechia
- Natural History Museum, University of Oslo, Oslo, Norway
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Coppi A, Baker AJM, Bettarini I, Colzi I, Echevarria G, Pazzagli L, Gonnelli C, Selvi F. Population Genetics of Odontarrhena (Brassicaceae) from Albania: The Effects of Anthropic Habitat Disturbance, Soil, and Altitude on a Ni-Hyperaccumulator Plant Group from a Major Serpentine Hotspot. PLANTS (BASEL, SWITZERLAND) 2020; 9:E1686. [PMID: 33271845 PMCID: PMC7759883 DOI: 10.3390/plants9121686] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2020] [Revised: 11/25/2020] [Accepted: 11/27/2020] [Indexed: 11/22/2022]
Abstract
Albanian taxa and populations of the genus Odontarrhena are most promising candidates for research on metal tolerance and Ni-agromining, but their genetic structure remains unknown. We investigated phylogenetic relationships and genetic differentiation in relation to distribution and ploidy of the taxa, anthropic site disturbance, elevation, soil type, and trace metals at each population site. After performing DNA sequencing of selected accessions, we applied DNA-fingerprinting to analyze the genetic structure of 32 populations from ultramafic and non-ultramafic outcrops across Albania. Low sequence divergence resulted in poorly resolved phylograms, but supported affinity between the two diploid serpentine endemics O. moravensis and O. rigida. Analysis of molecular variance (AMOVA) revealed significant population differentiation, but no isolation by distance. Among-population variation was higher in polyploids than in diploids, in which genetic distances were lower. Genetic admixing at population and individual level occurred especially in the polyploids O. chalcidica, O. decipiens, and O. smolikana. Admixing increased with site disturbance. Outlier loci were higher in serpentine populations but decreased along altitude with lower drought and heat stress. Genetic variability gained by gene flow and hybridization at contact zones with "resident" species of primary ultramafic habitats promoted expansion of the tetraploid O. chalcidica across anthropogenic sites.
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Affiliation(s)
- Andrea Coppi
- Department of Biology, University of Firenze, 50121 Firenze, Italy;
| | - Alan J. M. Baker
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane QLD 4072, Australia; (A.J.M.B.); (G.E.)
- Laboratoire Sols et Environnement, Université de Lorraine/INRA, F-54000 Vandoeuvre-lès-Nancy, France
| | - Isabella Bettarini
- Department of Biomedical Experimental and Clinical Sciences, University of Firenze, 50121 Firenze, Italy; (I.B.); (L.P.)
| | - Ilaria Colzi
- Department of Biology, University of Firenze, 50121 Firenze, Italy;
| | - Guillaume Echevarria
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane QLD 4072, Australia; (A.J.M.B.); (G.E.)
- Laboratoire Sols et Environnement, Université de Lorraine/INRA, F-54000 Vandoeuvre-lès-Nancy, France
| | - Luigia Pazzagli
- Department of Biomedical Experimental and Clinical Sciences, University of Firenze, 50121 Firenze, Italy; (I.B.); (L.P.)
| | | | - Federico Selvi
- Department of Agriculture, Food, Environment and Forestry, Laboratories of Botany, 50121 Firenze, Italy;
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10
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Manara A, Fasani E, Furini A, DalCorso G. Evolution of the metal hyperaccumulation and hypertolerance traits. PLANT, CELL & ENVIRONMENT 2020; 43:2969-2986. [PMID: 32520430 DOI: 10.1111/pce.13821] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Revised: 05/20/2020] [Accepted: 06/05/2020] [Indexed: 05/21/2023]
Abstract
To succeed in life, living organisms have to adapt to the environmental issues to which they are subjected. Some plants, defined as hyperaccumulators, have adapted to metalliferous environments, acquiring the ability to tolerate and accommodate high amounts of toxic metal into their shoot, without showing symptoms of toxicity. The determinants for these traits and their mode of action have long been the subject of research, whose attention lately moved to the evolution of the hypertolerance and hyperaccumulation traits. Genetic evidence indicates that the evolution of both traits includes significant evolutionary events that result in species-wide tolerant and accumulating backgrounds. Different edaphic environments are responsible for subsequent refinement, by local adaptive processes, leading to specific strategies and various degrees of hypertolerance and hyperaccumulation, which characterize metallicolous from non-metallicolous ecotypes belonging to the same genetic unit. In this review, we overview the most updated concepts regarding the evolution of hyperaccumulation and hypertolerance, highlighting also the ecological context concerning the plant populations displaying this fascinating phenomenon.
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Affiliation(s)
- Anna Manara
- Department of Biotechnology, University of Verona, Verona, Italy
| | - Elisa Fasani
- Department of Biotechnology, University of Verona, Verona, Italy
| | - Antonella Furini
- Department of Biotechnology, University of Verona, Verona, Italy
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Carvalho MEA, Castro PRC, Azevedo RA. Hormesis in plants under Cd exposure: From toxic to beneficial element? JOURNAL OF HAZARDOUS MATERIALS 2020; 384:121434. [PMID: 31812481 DOI: 10.1016/j.jhazmat.2019.121434] [Citation(s) in RCA: 90] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Revised: 09/24/2019] [Accepted: 10/07/2019] [Indexed: 05/17/2023]
Abstract
Tolerance level to cadmium (Cd) toxicity is generally associated with reductions of the internal Cd accumulation in living organisms. In plants, Cd exposure frequently triggers negative effects on their growth and productivity. However, an increased number of studies has reported the improved performance of some plant species (or their accessions/genotypes/varieties/cultivars/clones) to Cd exposure, despite Cd accumulation in their roots and shoots. These results indicate that plants have developed protective strategies to neutralize the side-effects from Cd toxicity or, more controversially, mechanisms that employ Cd as beneficial element. Here, we gathered information about Cd-induced hormetic effects on plants, and explored the potential mechanisms that allow them to have a better performance under Cd exposure. The promotion of plant development depends on both direct and indirect Cd-induced alterations in the metabolism of plants and their surround environment. In addition, the mechanisms behind the positive Cd-induced transgenerational effects were also discussed in the present paper.
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Affiliation(s)
- Marcia E A Carvalho
- Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz"/Universidade de São Paulo (ESALQ/USP), Avenida Pádua Dias, 11, Piracicaba, SP, 13418-900, Brazil
| | - Paulo R C Castro
- Departamento de Ciências Biológicas, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo (Esalq/USP), Avenida Pádua Dias, 11, Piracicaba, SP, 13418-900, Brazil
| | - Ricardo A Azevedo
- Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz"/Universidade de São Paulo (ESALQ/USP), Avenida Pádua Dias, 11, Piracicaba, SP, 13418-900, Brazil.
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12
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Corso M, García de la Torre VS. Biomolecular approaches to understanding metal tolerance and hyperaccumulation in plants. Metallomics 2020; 12:840-859. [DOI: 10.1039/d0mt00043d] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Trace metal elements are essential for plant growth but become toxic at high concentrations, while some non-essential elements, such as Cd and As, show toxicity even in traces.
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Affiliation(s)
- Massimiliano Corso
- Institut Jean-Pierre Bourgin
- Université Paris-Saclay
- INRAE
- AgroParisTech
- 78000 Versailles
| | - Vanesa S. García de la Torre
- Molecular Genetics and Physiology of Plants
- Faculty of Biology and Biotechnology
- Ruhr University Bochum
- 44801 Bochum
- Germany
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13
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Meier SK, Adams N, Wolf M, Balkwill K, Muasya AM, Gehring CA, Bishop JM, Ingle RA. Comparative RNA-seq analysis of nickel hyperaccumulating and non-accumulating populations of Senecio coronatus (Asteraceae). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 95:1023-1038. [PMID: 29952120 DOI: 10.1111/tpj.14008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Accepted: 06/20/2018] [Indexed: 06/08/2023]
Abstract
Most metal hyperaccumulating plants accumulate nickel, yet the molecular basis of Ni hyperaccumulation is not well understood. We chose Senecio coronatus to investigate this phenomenon as this species displays marked variation in shoot Ni content across ultramafic outcrops in the Barberton Greenstone Belt (South Africa), thus allowing an intraspecific comparative approach to be employed. No correlation between soil and shoot Ni contents was observed, suggesting that this variation has a genetic rather than environmental basis. This was confirmed by our observation that the accumulation phenotype of plants from two hyperaccumulator and two non-accumulator populations was maintained when the plants were grown on a soil mix from these four sites for 12 months. We analysed the genetic variation among 12 serpentine populations of S. coronatus, and used RNA-seq for de novo transcriptome assembly and analysis of gene expression in hyperaccumulator versus non-accumulator populations. Genetic analysis revealed the presence of hyperaccumulators in two well supported evolutionary lineages, indicating that Ni hyperaccumulation may have evolved more than once in this species. RNA-Seq analysis indicated that putative homologues of transporters associated with root iron uptake in plants are expressed at elevated levels in roots and shoots of hyperaccumulating populations of S. coronatus from both evolutionary lineages. We hypothesise that Ni hyperaccumulation in S. coronatus may have evolved through recruitment of these transporters, which play a role in the iron-deficiency response in other plant species.
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Affiliation(s)
- Stuart K Meier
- Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Nicolette Adams
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7700, South Africa
| | - Michael Wolf
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7700, South Africa
| | - Kevin Balkwill
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, 2050, South Africa
| | - Abraham Muthama Muasya
- Department of Biological Sciences, University of Cape Town, Rondebosch, 7700, South Africa
| | - Christoph A Gehring
- Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Jacqueline M Bishop
- Department of Biological Sciences, University of Cape Town, Rondebosch, 7700, South Africa
| | - Robert A Ingle
- Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7700, South Africa
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14
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Krämer U. Conceptualizing plant systems evolution. CURRENT OPINION IN PLANT BIOLOGY 2018; 42:66-75. [PMID: 29579731 DOI: 10.1016/j.pbi.2018.02.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Revised: 02/22/2018] [Accepted: 02/26/2018] [Indexed: 06/08/2023]
Abstract
Organisms inhabiting extreme environments are emerging models in systems evolution, enabling us to identify the molecular alterations effecting major phenotypic divergence through comparative approaches. Here I discuss possible physiological mechanisms underlying evolutionary adaptations to extreme environments both theoretically and in relation to experimental observations. Reasoning leads me to the 'conserved steady-state' hypothesis of evolutionary adaptation: Between closely related plants adapted to differently composed soils, the homeostatically controlled steady-state set point cytosolic (buffered) concentrations of mineral ions are conserved. Subsequently, I compare molecular alterations expected to contribute to physiological adaptations with our present knowledge. Key roles of enhanced gene product dosage in plant evolutionary adaptations question the widespread stimulus response-centric paradigm. As a broader implication, co-regulation networks can lack decisive functional network elements. With this article, I hope to stimulate a discussion across research fields and provide an initial conceptual framework for future experimental testing and for quantitative modelling.
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Affiliation(s)
- Ute Krämer
- Molecular Genetics and Physiology of Plants, Ruhr University Bochum, Universitätsstraße 150, ND3/30, D-44801 Bochum, Germany.
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15
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Rubio-Sanz L, Brito B, Palacios J. Analysis of metal tolerance in Rhizobium leguminosarum strains isolated from an ultramafic soil. FEMS Microbiol Lett 2018; 365:4813332. [DOI: 10.1093/femsle/fny010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Accepted: 01/16/2018] [Indexed: 11/12/2022] Open
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16
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Wang J, Feng C, Jiao T, Von Wettberg EB, Kang M. Genomic Signature of Adaptive Divergence despite Strong Nonadaptive Forces on Edaphic Islands: A Case Study of Primulina juliae. Genome Biol Evol 2017; 9:3495-3508. [PMID: 29272422 PMCID: PMC5751081 DOI: 10.1093/gbe/evx263] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/08/2017] [Indexed: 12/28/2022] Open
Abstract
Both genetic drift and divergent selection are expected to be strong evolutionary forces driving population differentiation on edaphic habitat islands. However, the relative contribution of genetic drift and divergent selection to population divergence has rarely been tested simultaneously. In this study, restriction-site associated DNA-based population genomic analyses were applied to assess the relative importance of drift and divergent selection on population divergence of Primulina juliae, an edaphic specialist from southern China. All populations were found with low standing genetic variation, small effective population size (NE), and signatures of bottlenecks. Populations with the lowest genetic variation were most genetically differentiated from other populations and the extent of genetic drift increased with geographic distance from other populations. Together with evidence of isolation by distance, these results support neutral drift as a critical evolutionary driver. Nonetheless, redundancy analysis revealed that genomic variation is significantly associated with both edaphic habitats and climatic factors independently of spatial effects. Moreover, more genomic variation was explained by environmental factors than by geographic variables, suggesting that local adaptation might have played an important role in driving population divergence. Finally, outlier tests and environment association analyses identified 31 single-nucleotide polymorphisms as candidates for adaptive divergence. Among these candidates, 26 single-nucleotide polymorphisms occur in/near genes that potentially play a role in adaptation to edaphic specialization. This study has important implications that improve our understanding of the joint roles of genetic drift and adaptation in generating population divergence and diversity of edaphic specialists.
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Affiliation(s)
- Jing Wang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Chao Feng
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Tenglong Jiao
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | | | - Ming Kang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Myanmar
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17
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Genetic variation, selection and evolution: special issue in celebration of the 50th anniversary of the population genetics group meeting. Heredity (Edinb) 2016; 118:1. [PMID: 27827388 DOI: 10.1038/hdy.2016.97] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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