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For: Kayasandik C, Negi P, Laezza F, Papadakis M, Labate D. Automated sorting of neuronal trees in fluorescent images of neuronal networks using NeuroTreeTracer. Sci Rep 2018;8:6450. [PMID: 29691458 PMCID: PMC5915526 DOI: 10.1038/s41598-018-24753-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Accepted: 04/10/2018] [Indexed: 11/09/2022]  Open
Number Cited by Other Article(s)
1
Liu M, Wu S, Chen R, Lin Z, Wang Y, Meijering E. Brain Image Segmentation for Ultrascale Neuron Reconstruction via an Adaptive Dual-Task Learning Network. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024;43:2574-2586. [PMID: 38373129 DOI: 10.1109/tmi.2024.3367384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
2
Hoffmann C, Cho E, Zalesky A, Di Biase MA. From pixels to connections: exploring in vitro neuron reconstruction software for network graph generation. Commun Biol 2024;7:571. [PMID: 38750282 PMCID: PMC11096190 DOI: 10.1038/s42003-024-06264-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 04/29/2024] [Indexed: 05/18/2024]  Open
3
Chen R, Liu M, Chen W, Wang Y, Meijering E. Deep learning in mesoscale brain image analysis: A review. Comput Biol Med 2023;167:107617. [PMID: 37918261 DOI: 10.1016/j.compbiomed.2023.107617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 10/06/2023] [Accepted: 10/23/2023] [Indexed: 11/04/2023]
4
Liu Y, Wang G, Ascoli GA, Zhou J, Liu L. Neuron tracing from light microscopy images: automation, deep learning and bench testing. Bioinformatics 2022;38:5329-5339. [PMID: 36303315 PMCID: PMC9750132 DOI: 10.1093/bioinformatics/btac712] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 10/19/2022] [Accepted: 10/26/2022] [Indexed: 12/24/2022]  Open
5
Garlick E, Thomas SG, Owen DM. Super-Resolution Imaging Approaches for Quantifying F-Actin in Immune Cells. Front Cell Dev Biol 2021;9:676066. [PMID: 34490240 PMCID: PMC8416680 DOI: 10.3389/fcell.2021.676066] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 05/20/2021] [Indexed: 11/21/2022]  Open
6
Shih CT, Chen NY, Wang TY, He GW, Wang GT, Lin YJ, Lee TK, Chiang AS. NeuroRetriever: Automatic Neuron Segmentation for Connectome Assembly. Front Syst Neurosci 2021;15:687182. [PMID: 34366800 PMCID: PMC8342815 DOI: 10.3389/fnsys.2021.687182] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 06/21/2021] [Indexed: 11/15/2022]  Open
7
Di Re J, Kayasandik C, Botello-Lins G, Labate D, Laezza F. Imaging of the Axon Initial Segment. ACTA ACUST UNITED AC 2020;89:e78. [PMID: 31532918 DOI: 10.1002/cpns.78] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
8
Janušonis S, Detering N, Metzler R, Vojta T. Serotonergic Axons as Fractional Brownian Motion Paths: Insights Into the Self-Organization of Regional Densities. Front Comput Neurosci 2020;14:56. [PMID: 32670042 PMCID: PMC7328445 DOI: 10.3389/fncom.2020.00056] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Accepted: 05/19/2020] [Indexed: 01/03/2023]  Open
9
Callara AL, Magliaro C, Ahluwalia A, Vanello N. A Smart Region-Growing Algorithm for Single-Neuron Segmentation From Confocal and 2-Photon Datasets. Front Neuroinform 2020;14:9. [PMID: 32256332 PMCID: PMC7090132 DOI: 10.3389/fninf.2020.00009] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Accepted: 02/26/2020] [Indexed: 12/13/2022]  Open
10
Li AZ, Corey L, Zhu J. Random-Reaction-Seed Method for Automated Identification of Neurite Elongation and Branching. Sci Rep 2019;9:2908. [PMID: 30814668 PMCID: PMC6393450 DOI: 10.1038/s41598-019-39962-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 02/01/2019] [Indexed: 01/09/2023]  Open
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