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Choudhuri I, Truhlar DG. Improved Predictive Tools for Structural Properties of Metal-Organic Frameworks. Molecules 2020; 25:E1552. [PMID: 32231071 PMCID: PMC7180546 DOI: 10.3390/molecules25071552] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 03/23/2020] [Accepted: 03/24/2020] [Indexed: 11/23/2022] Open
Abstract
The accurate determination of structural parameters is necessary to understand the electronic and magnetic properties of metal-organic frameworks (MOFs) and is a first step toward accurate calculations of electronic structure and function for separations and catalysis. Theoretical structural determination of metal-organic frameworks is particularly challenging because they involve ionic, covalent, and noncovalent interactions, which must be treated in a balanced fashion. Here, we apply a diverse group of local exchange-correlation functionals (PBE, PBEsol, PBE-D2, PBE-D3, vdW-DF2, SOGGA, MN15-L, revM06-L, SCAN, and revTPSS) to a broad test set of MOFs to seek the most accurate functionals to study various structural aspects of porous solids, in particular to study lattice constants, unit cell volume, two types of pore size characteristics, bond lengths, bond angles, and torsional angles). The recently developed meta functionals revM06-L and SCAN, without adding any molecular mechanics terms, are able to predict more accurate structures than previously recommended functionals, both those without molecular mechanics terms (PBE, PBEsol, vdW-DF2, and revTPSS) and those with them (PBE-D2 and PBE-D3). To provide a broader test, these two functionals are also tested for lattice constants and band gaps of unary, binary, and ternary semiconductors.
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Affiliation(s)
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN 55455-0431, USA;
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2
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Shi J, Li J, Zeng H, Zou G, Zhang Q, Lin Z. Water stable oxalate-based coordination polymers with in situ generated cyclic dipeptides showing high proton conductivity. Dalton Trans 2018; 47:15288-15292. [DOI: 10.1039/c8dt03659d] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Presented here are two water stable oxalate-based coordination polymers with in situ generated cyclic dipeptides, which show high proton conductivities on the order of 10−3 S cm−1 at 85 °C under 98% relative humidity.
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Affiliation(s)
- Jingyu Shi
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Jing Li
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Hongmei Zeng
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Guohong Zou
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Qinghua Zhang
- Institute of Chemical Materials
- China Academy of Engineering Physics
- Mianyang 621900
- P. R. China
| | - Zhien Lin
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
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3
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Li Q, Yu MH, Xu J, Li AL, Hu TL, Bu XH. Two new metal–organic frameworks based on tetrazole–heterocyclic ligands accompanied by in situ ligand formation. Dalton Trans 2017; 46:3223-3228. [DOI: 10.1039/c7dt00005g] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two new MOFs have been constructed by the Dimroth rearrangement of the in situ generated organic ligand 5-((2H-tetrazol-5-yl)amino)isophthalic acid (H3L).
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Affiliation(s)
- Qin Li
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
| | - Mei-Hui Yu
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
| | - Jian Xu
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
| | - Ai-Lin Li
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
| | - Tong-Liang Hu
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
| | - Xian-He Bu
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
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4
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Yotnoi B, Meundaeng N, Funfuenha W, Pattarawarapan M, Prior TJ, Rujiwatra A. Influence of secondary ligand on structures and topologies of lanthanide coordination polymers with 1,3,5-triazine-2,4,6-triamine hexaacetic acid. J COORD CHEM 2015. [DOI: 10.1080/00958972.2015.1100721] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Bunlawee Yotnoi
- Faculty of Science, Department of Chemistry, Chiang Mai University, Chiang Mai, Thailand
| | - Natthaya Meundaeng
- Faculty of Science, Department of Chemistry, Chiang Mai University, Chiang Mai, Thailand
| | - Watcharee Funfuenha
- Faculty of Science, Department of Chemistry, Chiang Mai University, Chiang Mai, Thailand
| | - Mookda Pattarawarapan
- Faculty of Science, Department of Chemistry, Chiang Mai University, Chiang Mai, Thailand
| | - Timothy J. Prior
- Department of Chemistry, University of Hull, Kingston upon Hull, UK
| | - Apinpus Rujiwatra
- Faculty of Science, Department of Chemistry, Chiang Mai University, Chiang Mai, Thailand
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Zhang AQ, Liu N, Liu ZH. A novel Zn 6 Co 3 cluster-based heterometallic coordination polymer with PMG 3− linker formed via in situ decarboxylation from H 4 PMIDA. INORG CHEM COMMUN 2015. [DOI: 10.1016/j.inoche.2015.08.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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6
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Han SD, Miao XH, Liu SJ, Bu XH. A series of cobalt and nickel clusters based on thiol-containing ligands accompanied by in situ ligand formation. Dalton Trans 2015; 44:560-7. [DOI: 10.1039/c4dt03109a] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a series of cobalt and nickel clusters based on thiol-containing ligands, 2-mercaptobenzothiazole (HMBT) and 2-mercaptobenzimidazole (H2MBI), accompanied by in situ ligand transformation of HMBT. The magnetic properties of the cobalt clusters have been investigated.
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Affiliation(s)
- Song-De Han
- Department of Chemistry
- TKL of Metal- and Molecule-Based Material Chemistry and Collaborative Innovation Center of Chemical Science and Engineering (Tianjin)
- Nankai University
- Tianjin 300071
- P. R. China
| | - Xiao-Hong Miao
- Department of Chemistry
- TKL of Metal- and Molecule-Based Material Chemistry and Collaborative Innovation Center of Chemical Science and Engineering (Tianjin)
- Nankai University
- Tianjin 300071
- P. R. China
| | - Sui-Jun Liu
- Department of Chemistry
- TKL of Metal- and Molecule-Based Material Chemistry and Collaborative Innovation Center of Chemical Science and Engineering (Tianjin)
- Nankai University
- Tianjin 300071
- P. R. China
| | - Xian-He Bu
- Department of Chemistry
- TKL of Metal- and Molecule-Based Material Chemistry and Collaborative Innovation Center of Chemical Science and Engineering (Tianjin)
- Nankai University
- Tianjin 300071
- P. R. China
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Lanthanide-based metal–peptide frameworks prepared by ionothermal method: Anion direct effect, DFT calculation and luminescence property. INORG CHEM COMMUN 2014. [DOI: 10.1016/j.inoche.2014.01.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Han SD, Chen YQ, Zhao JP, Liu SJ, Miao XH, Hu TL, Bu XH. Solvent-induced structural diversities from discrete cup-shaped Co8clusters to Co8cluster-based chains accompanied by in situ ligand conversion. CrystEngComm 2014. [DOI: 10.1039/c3ce42007h] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Zhuang GL, Tan L, Chen WL, Zheng J, Yao HZ, Zhong X, Wang JG. Experimental, DFT and quantum Monte Carlo studies of a series of peptide-based metal–organic frameworks: synthesis, structures and properties. Inorg Chem Front 2014. [DOI: 10.1039/c4qi00043a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Properties and the function–structure relation of four peptide-based MOFs were identified by experimental measurements, DFT and quantum Monte Carlo calculation.
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Affiliation(s)
- Gui-lin Zhuang
- Institute of Industrial Catalysis
- College of Chemical Engineering
- Zhejiang University of Technology
- Hangzhou, People's Republic of China
| | - Li Tan
- Institute of Industrial Catalysis
- College of Chemical Engineering
- Zhejiang University of Technology
- Hangzhou, People's Republic of China
| | - Wu-lin Chen
- Institute of Industrial Catalysis
- College of Chemical Engineering
- Zhejiang University of Technology
- Hangzhou, People's Republic of China
- Zhejiang Engineering Design Co
| | - Jun Zheng
- Center of Modern Experimental Technology
- Anhui University
- Hefei, People's Republic of China
| | - Hong-zhou Yao
- Institute of Industrial Catalysis
- College of Chemical Engineering
- Zhejiang University of Technology
- Hangzhou, People's Republic of China
| | - Xing Zhong
- Institute of Industrial Catalysis
- College of Chemical Engineering
- Zhejiang University of Technology
- Hangzhou, People's Republic of China
| | - Jian-guo Wang
- Institute of Industrial Catalysis
- College of Chemical Engineering
- Zhejiang University of Technology
- Hangzhou, People's Republic of China
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da Silva FF, de Oliveira CAF, Falcão EHL, Gatto CC, da Costa NB, Freire RO, Chojnacki J, Alves Júnior S. Hydrothermal reactions: From the synthesis of ligand to new lanthanide 3D-coordination polymers. J SOLID STATE CHEM 2013. [DOI: 10.1016/j.jssc.2013.09.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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11
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Zhou Y, Guo Y, Xu S, Zhang L, Ahmad W, Shi Z. Photoluminescent 3D lanthanide-organic frameworks based on 2,5-dioxo-1,4-piperazinylbis(methylphosphonic) acid formed via in situ cyclodehydration of glyphosates. Inorg Chem 2013; 52:6338-45. [PMID: 23688305 DOI: 10.1021/ic302821w] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hydrothermal reactions of lanthanide nitrates with glyphosate have resulted three new isostructural 3D lanthanide-organic frameworks, Ln(NO3)(H2L) [Ln = Eu (1), Tb (2), Gd (3); H4L = 2,5-dioxo-1,4-piperazinylbis(methylphosphonic) acid], with good yields, where H4L as a new ligand was formed via in situ cyclodehydration of original ligand glyphosates during the hydrothermal reaction. The compounds were thoroughly characterized by IR, UV-vis, elemental analysis, single-crystal X-ray diffraction analysis, powder X-ray diffraction analysis, and thermogravimetric/differential thermal analysis (TG-DTA). Three compounds display 3D 6,6-connected open frameworks with 4(13)·6(2) topology possessing 1D channels in which NO3(-) anions act as troglodytes by chelating Ln(3+) centers. The TG-DTA study of the compounds showed remarkable thermal stability up to 380 °C. Under room temperature UV-light irradiation, the Eu(3+) and Tb(3+) compounds showed the corresponding characteristic Ln(3+) intra 4f(n) emission peaks. The triplet energy level (21882 cm(-1)) of the ligand (H4L) was determined from the emission spectrum of its Gd(3+) compound at 77 K. The emission lifetimes (1.54 ms of (5)D0 for compound 1 and 1.98 ms of (5)D4 for compound 2) and absolute emission quantum yields (10.1% for compound 1 and 5.9% for compound 2) were also determined.
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Affiliation(s)
- Yunshan Zhou
- State Key Laboratory of Chemical Resource Engineering, Institute of Science, Beijing University of Chemical Technology, Beijing 100029, People's Republic of China.
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Chen WX, Liu QP, Zhuang GL, Zhou SJ. A novel La(III)-based metal-organic framework (MOF) with a new topology: poly[diaquabis(μ5-2,5-dioxopiperazine-1,4-diacetato)(μ2-oxalato)dilanthanum(III)]. Acta Crystallogr C 2013; 69:5-7. [PMID: 23282902 DOI: 10.1107/s0108270112048184] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2012] [Accepted: 11/23/2012] [Indexed: 11/10/2022] Open
Abstract
In the title metal-organic framework (MOF), [La(C(8)H(8)N(2)O(6))(C(2)O(4))(0.5)(H(2)O)](n), the La(III) cation is coordinated by eight O atoms in a square antiprismatic configuration. Each La(III) cation is connected to adjacent La(III) cations by bridging 2,5-dioxopiperazine-1,4-diacetate (PODC(2-)) and oxalate (lying about an inversion centre) ligands, generating two-dimensional grid layers. The layers are further linked via the carboxylate groups of the PODC(2-) ligands in syn-syn and syn-anti modes, resulting in a three-dimensional framework with a short Schläfli vertex notation of {4(7).6(3)}{4(7).6(7).8}.
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Affiliation(s)
- Wen-Xian Chen
- College of Chemical Engineering and Materials Science, Zhejiang University of Technology, Hangzhou 310014, Zhejiang, People's Republic of China
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Chen WL, Chen WX, Zhuang GL, Zheng J, Tan L, Zhong X, Wang JG. The effect of earth metal ion on the property of peptide-based metal–organic frameworks. CrystEngComm 2013. [DOI: 10.1039/c3ce40587g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Zeng YF, Hu X, Xue L, Liu SJ, Hu TL, Bu XH. Fe20 Cluster Units Based Coordination Polymer from in Situ Ligand Conversion and Trapping of an Intermediate. Inorg Chem 2012; 51:9571-3. [DOI: 10.1021/ic300963z] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yong-Fei Zeng
- Department of Chemistry and TKL of Metal-
and Molecule-Based Material Chemistry, Nankai University, Tianjin 300071, China
| | - Xin Hu
- Department of Chemistry and TKL of Metal-
and Molecule-Based Material Chemistry, Nankai University, Tianjin 300071, China
| | - Li Xue
- Department of Chemistry and TKL of Metal-
and Molecule-Based Material Chemistry, Nankai University, Tianjin 300071, China
| | - Sui-Jun Liu
- Department of Chemistry and TKL of Metal-
and Molecule-Based Material Chemistry, Nankai University, Tianjin 300071, China
| | - Tong-Liang Hu
- Department of Chemistry and TKL of Metal-
and Molecule-Based Material Chemistry, Nankai University, Tianjin 300071, China
| | - Xian-He Bu
- Department of Chemistry and TKL of Metal-
and Molecule-Based Material Chemistry, Nankai University, Tianjin 300071, China
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Sun D, Wei ZH, Yang CF, Wang DF, Zhang N, Huang RB, Zheng LS. pH-Dependent Ag(i) coordination architectures constructed from 4-cyanopyridine and phthalic acid: from discrete structure to 2D sheet. CrystEngComm 2011. [DOI: 10.1039/c0ce00539h] [Citation(s) in RCA: 131] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Xu J, Yao XQ, Huang LF, Li YZ, Zheng HG. Syntheses, structures, photoluminescence and magnetic properties of four new metal–organic frameworks based on imidazoleligands and aromatic polycarboxylate acids. CrystEngComm 2011. [DOI: 10.1039/c0ce00219d] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Sun D, Zhang N, Luo GG, Huang RB, Zheng LS. Ammine(2,2'-bipyridine-kappa(2)N,N')silver(I) nitrate: a dimer formed by pi-pi stacking and ligand-unsupported Ag...Ag interactions. Acta Crystallogr C 2010; 66:m75-8. [PMID: 20203399 DOI: 10.1107/s010827011000377x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2009] [Accepted: 01/30/2010] [Indexed: 11/10/2022] Open
Abstract
Reaction of AgNO(3) and 2,2'-bipyridine (bipy) under ultrasonic treatment gave the title compound, [Ag(C(10)H(8)N(2))(NH(3))]NO(3). The crystal structure consists of dimers formed by two symmetry-related Ag(I)-bipy monomers connected through intra-dimer pi-pi stacking and ligand-unsupported Ag...Ag interactions. A crystallographic C2 axis passes through the mid-point of and is perpendicular to the Ag...Ag(i)(-x + 1, y, -z + 1/2) axis. In addition, each Ag(I) cation is coordinated by one chelating bipy ligand and one ammine ligand, giving a trigonal coordination environment capped by the symmetry-equivalent Ag atom. Molecules are assembled by Ag...Ag, pi-pi, hydrogen-bond (N-H...O and C-H...O) and weak Ag...pi interactions into a three-dimensional framework. Comparing the products synthesized under different mechanical treatments, we found that reaction conditions have a significant influence on the resulting structures. The luminescence properties of the title compound are also discussed.
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Affiliation(s)
- Di Sun
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China
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Zhuang GL, Kong XJ, Long LS, Huang RB, Zheng LS. Effect of lanthanide contraction on crystal structures of lanthanide coordination polymers with 2,5-piperazinedione-1,4-diacetic acid. CrystEngComm 2010. [DOI: 10.1039/c001537g] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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