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Souza L, Miller BR, Cammarota RC, Lo A, Lopez I, Shiue YS, Bergstrom BD, Dishman SN, Fettinger JC, Sigman MS, Shaw JT. Deconvoluting Nonlinear Catalyst-Substrate Effects in the Intramolecular Dirhodium-Catalyzed C-H Insertion of Donor/Donor Carbenes Using Data Science Tools. ACS Catal 2024; 14:104-115. [PMID: 38205021 PMCID: PMC10775150 DOI: 10.1021/acscatal.3c04256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 11/09/2023] [Accepted: 11/10/2023] [Indexed: 01/12/2024]
Abstract
Interactions between catalysts and substrates can be highly complex and dynamic, often complicating the development of models to either predict or understand such processes. A dirhodium(II)-catalyzed C-H insertion of donor/donor carbenes into 2-alkoxybenzophenone substrates to form benzodihydrofurans was selected as a model system to explore nonlinear methods to achieve a mechanistic understanding. We found that the application of traditional methods of multivariate linear regression (MLR) correlating DFT-derived descriptors of catalysts and substrates leads to poorly performing models. This inspired the introduction of nonlinear descriptor relationships into modeling by applying the sure independence screening and sparsifying operator (SISSO) algorithm. Based on SISSO-generated descriptors, a high-performing MLR model was identified that predicts external validation points well. Mechanistic interpretation was aided by the deconstruction of feature relationships using chemical space maps, decision trees, and linear descriptors. Substrates were found to have a strong dependence on steric effects for determining their innate cyclization selectivity preferences. Catalyst reactive site features can then be matched to product features to tune or override the resultant diastereoselectivity within the substrate-dictated ranges. This case study presents a method for understanding complex interactions often encountered in catalysis by using nonlinear modeling methods and linear deconvolution by pattern recognition.
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Affiliation(s)
- Lucas
W. Souza
- Department
of Chemistry, University of California, Davis, California 95616, United States
| | - Beck R. Miller
- Department
of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Ryan C. Cammarota
- Department
of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Anna Lo
- Department
of Chemistry, University of California, Davis, California 95616, United States
| | - Ixchel Lopez
- Department
of Chemistry, University of California, Davis, California 95616, United States
| | - Yuan-Shin Shiue
- Department
of Chemistry, University of California, Davis, California 95616, United States
| | - Benjamin D. Bergstrom
- Department
of Chemistry, University of California, Davis, California 95616, United States
| | - Sarah N. Dishman
- Department
of Chemistry, University of California, Davis, California 95616, United States
| | - James C. Fettinger
- Department
of Chemistry, University of California, Davis, California 95616, United States
| | - Matthew S. Sigman
- Department
of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Jared T. Shaw
- Department
of Chemistry, University of California, Davis, California 95616, United States
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2
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Singha S, Buchsteiner M, Bistoni G, Goddard R, Fürstner A. A New Ligand Design Based on London Dispersion Empowers Chiral Bismuth-Rhodium Paddlewheel Catalysts. J Am Chem Soc 2021; 143:5666-5673. [PMID: 33829767 PMCID: PMC8154533 DOI: 10.1021/jacs.1c01972] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Indexed: 01/02/2023]
Abstract
Heterobimetallic bismuth-rhodium paddlewheel complexes with phenylglycine ligands carrying TIPS-groups at the meta-positions of the aromatic ring exhibit outstanding levels of selectivity in reactions of donor/acceptor and donor/donor carbenes; at the same time, the reaction rates are much faster and the substrate scope is considerably wider than those of previous generations of chiral [BiRh] catalysts. As shown by a combined experimental, crystallographic, and computational study, the new catalysts draw their excellent application profile largely from the stabilization of the chiral ligand sphere by London dispersion (LD) interactions of the peripheral silyl substituents.
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Affiliation(s)
| | | | - Giovanni Bistoni
- Max-Planck-Institut für
Kohlenforschung, 45470 Mülheim/Ruhr, Germany
| | - Richard Goddard
- Max-Planck-Institut für
Kohlenforschung, 45470 Mülheim/Ruhr, Germany
| | - Alois Fürstner
- Max-Planck-Institut für
Kohlenforschung, 45470 Mülheim/Ruhr, Germany
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3
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Affiliation(s)
- Radim Hrdina
- Institute of Organic Chemistry Justus-Liebig University Giessen Heinrich-Buff-Ring 17 35392 Giessen Germany
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4
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Collins LR, Auris S, Goddard R, Fürstner A. Chiral Heterobimetallic Bismuth-Rhodium Paddlewheel Catalysts: A Conceptually New Approach to Asymmetric Cyclopropanation. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201900265] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Lee R. Collins
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Sebastian Auris
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Richard Goddard
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Alois Fürstner
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
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5
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Collins LR, Auris S, Goddard R, Fürstner A. Chiral Heterobimetallic Bismuth-Rhodium Paddlewheel Catalysts: A Conceptually New Approach to Asymmetric Cyclopropanation. Angew Chem Int Ed Engl 2019; 58:3557-3561. [DOI: 10.1002/anie.201900265] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Indexed: 12/21/2022]
Affiliation(s)
- Lee R. Collins
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Sebastian Auris
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Richard Goddard
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Alois Fürstner
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
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6
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Głaszczka R, Leniak A, Jaźwiński J. Ternary complexes consisting of chiral rhodium(II) tetracarboxylates, derivatives of amino acid and triphenylphosphine: The 31P NMR study. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.09.068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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7
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Chiral Dirhodium(II) Carboxylates: New Insights into the Effect of Ligand Stereo-Purity on Catalyst Structure and Enantioselectivity. Catalysts 2018. [DOI: 10.3390/catal8070268] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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8
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On the Structure of Chiral Dirhodium(II) Carboxylate Catalysts: Stereoselectivity Relevance and Insights. Catalysts 2017. [DOI: 10.3390/catal7110347] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
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9
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Werlé C, Goddard R, Philipps P, Farès C, Fürstner A. Stabilization of a Chiral Dirhodium Carbene by Encapsulation and a Discussion of the Stereochemical Implications. Angew Chem Int Ed Engl 2016; 55:10760-5. [DOI: 10.1002/anie.201605502] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Indexed: 11/09/2022]
Affiliation(s)
- Christophe Werlé
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Richard Goddard
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Petra Philipps
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Christophe Farès
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Alois Fürstner
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
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10
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Werlé C, Goddard R, Philipps P, Farès C, Fürstner A. Stabilization of a Chiral Dirhodium Carbene by Encapsulation and a Discussion of the Stereochemical Implications. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605502] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Christophe Werlé
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Richard Goddard
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Petra Philipps
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Christophe Farès
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
| | - Alois Fürstner
- Max-Planck-Institut für Kohlenforschung; 45470 Mülheim/Ruhr Germany
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11
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Adly FG, Gardiner MG, Ghanem A. Design and Synthesis of Novel Chiral Dirhodium(II) Carboxylate Complexes for Asymmetric Cyclopropanation Reactions. Chemistry 2016; 22:3447-3461. [PMID: 26833989 DOI: 10.1002/chem.201504817] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2015] [Indexed: 11/10/2022]
Abstract
A novel approach to the design of dirhodium(II) tetracarboxylates derived from (S)-amino acid ligands is reported. The approach is founded on tailoring the steric influences of the overall catalyst structure by reducing the local symmetry of the ligand's N-heterocyclic tether. The application of the new approach has led to the uncovering of [Rh2 (S-tert PTTL)4 ] as a new member of the dirhodium(II) family with extraordinary selectivity in cyclopropanation reactions. The stereoselectivity of [Rh2 (S-tert PTTL)4 ] was found to be comparable to that of [Rh2 (S-PTAD)4 ] (up to >99 % ee), with the extra benefit of being more synthetically accessible. Correlations based on X-ray structures to justify the observed enantioinduction are also discussed.
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Affiliation(s)
| | - Michael G Gardiner
- School of Physical Sciences, Chemistry, University of Tasmania, Hobart, TAS, 7001, Australia
| | - Ashraf Ghanem
- Biomedical science department, University of Canberra, ACT, 2601, Australia.
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12
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Kisan HK, Sunoj RB. Axial Coordination Dichotomy in Dirhodium Carbenoid Catalysis: A Curious Case of Cooperative Asymmetric Dual-Catalytic Approach toward Amino Esters. J Org Chem 2015; 80:2192-7. [DOI: 10.1021/jo5027029] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Hemanta K. Kisan
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Raghavan B. Sunoj
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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13
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Adly FG, Ghanem A. Chiral Dirhodium(II) Carboxylates and Carboxamidates as Effective Chemzymes in Asymmetric Synthesis of Three-Membered Carbocycles. Chirality 2014; 26:692-711. [DOI: 10.1002/chir.22347] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2014] [Accepted: 05/07/2014] [Indexed: 02/06/2023]
Affiliation(s)
- Frady G. Adly
- Chirality program, Faculty of ESTEM; University of Canberra; ACT Australia
| | - Ashraf Ghanem
- Chirality program, Faculty of ESTEM; University of Canberra; ACT Australia
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14
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Adly FG, Maddalena J, Ghanem A. Rh2
(S
-1,2-NTTL)4
: A Novel Rh2
(S
-PTTL)4
Analog With Lower Ligand Symmetry for Asymmetric Synthesis of Chiral Cyclopropylphosphonates. Chirality 2014; 26:764-74. [DOI: 10.1002/chir.22349] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Accepted: 05/01/2014] [Indexed: 11/06/2022]
Affiliation(s)
- Frady G. Adly
- Chirality Program; University of Canberra; ACT Australia
| | | | - Ashraf Ghanem
- Chirality Program; University of Canberra; ACT Australia
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15
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Cmoch P, Głaszczka R, Jaźwiński J, Kamieński B, Senkara E. Adducts of nitrogenous ligands with rhodium(II) tetracarboxylates and tetraformamidinate: NMR spectroscopy and density functional theory calculations. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2014; 52:61-68. [PMID: 24327228 DOI: 10.1002/mrc.4035] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Revised: 09/29/2013] [Accepted: 11/04/2013] [Indexed: 06/03/2023]
Abstract
Complexation of tetrakis(μ2-N,N'-diphenylformamidinato-N,N')-di-rhodium(II) with ligands containing nitrile, isonitrile, amine, hydroxyl, sulfhydryl, isocyanate, and isothiocyanate functional groups has been studied in liquid and solid phases using (1)H, (13)C and (15)N NMR, (13)C and (15)N cross polarisation-magic angle spinning NMR, and absorption spectroscopy in the visible range. The complexation was monitored using various NMR physicochemical parameters, such as chemical shifts, longitudinal relaxation times T1 , and NOE enhancements. Rhodium(II) tetraformamidinate selectively bonded only unbranched amine (propan-1-amine), pentanenitrile, and (1-isocyanoethyl)benzene. No complexation occurred in the case of ligands having hydroxyl, sulfhydryl, isocyanate, and isothiocyanate functional groups, and more expanded amine molecules such as butan-2-amine and 1-azabicyclo[2.2.2]octane. Such features were opposite to those observed in rhodium(II) tetracarboxylates, forming adducts with all kind of ligands. Special attention was focused on the analysis of Δδ parameters, defined as a chemical shift difference between signal in adduct and corresponding signal in free ligand. In the case of (1)H NMR, Δδ values were either negative in adducts of rhodium(II) tetraformamidinate or positive in adducts of rhodium(II) tetracarboxylates. Experimental findings were supported by density functional theory molecular modelling and gauge independent atomic orbitals chemical shift calculations. The calculation of chemical shifts combined with scaling procedure allowed to reproduce qualitatively Δδ parameters.
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Affiliation(s)
- Piotr Cmoch
- Institute of Organic Chemistry PAS, ul. Kasprzaka 44/52, 01-224, Warsaw, Poland
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16
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Głaszczka R, Jaźwiński J. Complexation of heteroaromatic N-oxides with rhodium(II) tetracarboxylates in solution: DFT and NMR investigations. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2014.01.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Jaźwiński J, Sadlej A. Complexation of rhodium(II) tetracarboxylates with aliphatic diamines in solution: 1H and 13C NMR and DFT investigations. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2013; 51:662-670. [PMID: 23943201 DOI: 10.1002/mrc.3997] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Revised: 07/15/2013] [Accepted: 07/15/2013] [Indexed: 06/02/2023]
Abstract
The complexation of rhodium(II) tetraacetate, tetrakistrifluoroaceate and tetrakisoctanoate with a set of diamines (ethane-1,diamine, propane-1,3-diamine and nonane-1,9-diamine) and their N,N'-dimethyl and N,N,N',N'-tetramethyl derivatives in chloroform solution has been investigated by (1) H and (13) C NMR spectroscopy and density functional theory (DFT) modelling. A combination of two bifunctional reagents, diamines and rhodium(II) tetracarboxylates, yielded insoluble coordination polymers as main products of complexation and various adducts in the solution, being in equilibrium with insoluble material. All diamines initially formed the 2 : 1 (blue), (1 : 1)n oligomeric (red) and 1 : 2 (red) axial adducts in solution, depending on the reagents' molar ratio. Adducts of primary and secondary diamines decomposed in the presence of ligand excess, the former via unstable equatorial complexes. The complexation of secondary diamines slowed down the inversion at nitrogen atoms in NH(CH3 ) functional groups and resulted in the formation of nitrogenous stereogenic centres, detectable by NMR. Axial adducts of tertiary diamines appeared to be relatively stable. The presence of long aliphatic chains in molecules (adducts of nonane-1,9-diamines or rhodium(II) tetrakisoctanoate) increased adduct solubility. Hypothetical structures of the equatorial adduct of rhodium(II) tetraacetate with ethane-1,2-diamine and their NMR parameters were explored by means of DFT calculations.
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Affiliation(s)
- Jarosław Jaźwiński
- Institute of Organic Chemistry PAS, ul. Kasprzaka 44/52, 01-224, Warsaw, Poland
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18
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Chiral Derivatizing Agents, Macrocycles, Metal Complexes, and Liquid Crystals for Enantiomer Differentiation in NMR Spectroscopy. Top Curr Chem (Cham) 2013; 341:1-68. [DOI: 10.1007/128_2013_433] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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19
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Trindade AF, Coelho JAS, Afonso CAM, Veiros LF, Gois PMP. Fine Tuning of Dirhodium(II) Complexes: Exploring the Axial Modification. ACS Catal 2012. [DOI: 10.1021/cs200597a] [Citation(s) in RCA: 88] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alexandre F. Trindade
- CQFM, Centro
de Química-Física
Molecular and IN-Institute of Nanosciences and Nanotechnology, Instituto Superior Técnico, 1049-001 Lisboa,
Portugal
- Research Institute
for Medicines
and Pharmaceutical Sciences (iMed.UL), Faculty of Pharmacy, University of Lisbon, Avenida Prof. Gama Pinto, 1649-003
Lisbon, Portugal
| | - Jaime A. S. Coelho
- Research Institute
for Medicines
and Pharmaceutical Sciences (iMed.UL), Faculty of Pharmacy, University of Lisbon, Avenida Prof. Gama Pinto, 1649-003
Lisbon, Portugal
| | - Carlos A. M. Afonso
- Research Institute
for Medicines
and Pharmaceutical Sciences (iMed.UL), Faculty of Pharmacy, University of Lisbon, Avenida Prof. Gama Pinto, 1649-003
Lisbon, Portugal
| | - Luis F. Veiros
- CQE, Departamento
de Engenharia
Química e Biológica, Complexo I, Instituto Superior
Técnico, Universidade Técnica de Lisboa, Avenida Rovisco Pais 1, 1049-001 Lisboa, Portugal
| | - Pedro M. P. Gois
- Research Institute
for Medicines
and Pharmaceutical Sciences (iMed.UL), Faculty of Pharmacy, University of Lisbon, Avenida Prof. Gama Pinto, 1649-003
Lisbon, Portugal
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