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Kumar N, Jaitak V. Recent Advancement in NMR Based Plant Metabolomics: Techniques, Tools, and Analytical Approaches. Crit Rev Anal Chem 2024:1-25. [PMID: 38990786 DOI: 10.1080/10408347.2024.2375314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2024]
Abstract
Plant metabolomics, a rapidly advancing field within plant biology, is dedicated to comprehensively exploring the intricate array of small molecules in plant systems. This entails precisely gathering comprehensive chemical data, detecting numerous metabolites, and ensuring accurate molecular identification. Nuclear magnetic resonance (NMR) spectroscopy, with its detailed chemical insights, is crucial in obtaining metabolite profiles. Its widespread application spans various research disciplines, aiding in comprehending chemical reactions, kinetics, and molecule characterization. Biotechnological advancements have further expanded NMR's utility in metabolomics, particularly in identifying disease biomarkers across diverse fields such as agriculture, medicine, and pharmacology. This review covers the stages of NMR-based metabolomics, including historical aspects and limitations, with sample preparation, data acquisition, spectral processing, analysis, and their application parts.
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Affiliation(s)
- Nitish Kumar
- Department of Pharmaceutical Science and Natural Products, Central University of Punjab, Bathinda, India
| | - Vikas Jaitak
- Department of Pharmaceutical Science and Natural Products, Central University of Punjab, Bathinda, India
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2
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Qi XW, Liu YM, Hu YK, Yuan H, Ayeni EA, Liao X. Ligand fishing based on tubular microchannel modified with monoamine oxidase B for screening of the enzyme's inhibitors from Crocus sativus and Edgeworthia gardneri. J Sep Sci 2022; 45:2394-2405. [PMID: 35461190 DOI: 10.1002/jssc.202200057] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 03/24/2022] [Accepted: 04/17/2022] [Indexed: 11/07/2022]
Abstract
A novel strategy of performing ligand fishing with enzyme-modified open tubular microchannel was proposed for screening bioactive components present in medicinal plants. Monoamine oxidase B was immobilized onto the surface of the microchannel for the first time to specifically extract its ligands when the plant's extracts solution flows through the channel. The thermal and the storage stability of immobilized monoamine oxidase B were significantly enhanced after immobilization. Crocin I and Ⅱ were extracted from Crocus sativus, and tiliroside was extracted from Edgeworthia gardneri. All the three compounds were inhibitors of the enzyme with the half-maximal inhibitory concentration values of 26.70 ± 0.91, 19.88 ± 2.78, and 15.65 ± 0.85 μM, respectively. The enzyme inhibition kinetics and molecular docking were investigated. This is the first report on the inhibitory effects of tiliroside and crocin Ⅱ. The novel ligand fishing method proposed in this work possesses advantages of rapidness, high efficiency, and tiny sample consumption compared to routine ligand fishing, with promising potential for screening active natural products in complex mixtures.
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Affiliation(s)
- Xu-Wei Qi
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, P. R. China.,University of Chinese Academy of Sciences, Beijing, P. R. China
| | - Yi-Ming Liu
- Department of Chemistry and Biochemistry, Jackson State University, Jackson, Mississippi, USA
| | - Yi-Kao Hu
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, P. R. China.,University of Chinese Academy of Sciences, Beijing, P. R. China
| | - Hao Yuan
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, P. R. China.,University of Chinese Academy of Sciences, Beijing, P. R. China
| | - Emmanuel Ayodeji Ayeni
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, P. R. China.,University of Chinese Academy of Sciences, Beijing, P. R. China
| | - Xun Liao
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, P. R. China
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3
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Lhoste C, Lorandel B, Praud C, Marchand A, Mishra R, Dey A, Bernard A, Dumez JN, Giraudeau P. Ultrafast 2D NMR for the analysis of complex mixtures. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2022; 130-131:1-46. [PMID: 36113916 DOI: 10.1016/j.pnmrs.2022.01.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 01/21/2022] [Accepted: 01/23/2022] [Indexed: 06/15/2023]
Abstract
2D NMR is extensively used in many different fields, and its potential for the study of complex biochemical or chemical mixtures has been widely demonstrated. 2D NMR gives the ability to resolve peaks that overlap in 1D spectra, while providing both structural and quantitative information. However, complex mixtures are often analysed in situations where the data acquisition time is a crucial limitation, due to an ongoing chemical reaction or a moving sample from a hyphenated technique, or to the high-throughput requirement associated with large sample collections. Among the great diversity of available fast 2D methods, ultrafast (or single-scan) 2D NMR is probably the most general and versatile approach for complex mixture analysis. Indeed, ultrafast NMR has undergone an impressive number of methodological developments that have helped turn it into an efficient analytical tool, and numerous applications to the analysis of mixtures have been reported. This review first summarizes the main concepts, features and practical limitations of ultrafast 2D NMR, as well as the methodological developments that improved its analytical potential. Then, a detailed description of the main applications of ultrafast 2D NMR to mixture analysis is given. The two major application fields of ultrafast 2D NMR are first covered, i.e., reaction/process monitoring and metabolomics. Then, the potential of ultrafast 2D NMR for the analysis of hyperpolarized mixtures is described, as well as recent developments in oriented media. This review focuses on high-resolution liquid-state 2D experiments (including benchtop NMR) that include at least one spectroscopic dimension (i.e., 2D spectroscopy and DOSY) but does not cover in depth applications without spectral resolution and/or in inhomogeneous fields.
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Affiliation(s)
- Célia Lhoste
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | | | - Clément Praud
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Achille Marchand
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Rituraj Mishra
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Arnab Dey
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Aurélie Bernard
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
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4
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Kupče Ē, Frydman L, Webb AG, Yong JRJ, Claridge TDW. Parallel nuclear magnetic resonance spectroscopy. ACTA ACUST UNITED AC 2021. [DOI: 10.1038/s43586-021-00024-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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5
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Emwas AH, Szczepski K, Poulson BG, Chandra K, McKay RT, Dhahri M, Alahmari F, Jaremko L, Lachowicz JI, Jaremko M. NMR as a "Gold Standard" Method in Drug Design and Discovery. Molecules 2020; 25:E4597. [PMID: 33050240 PMCID: PMC7594251 DOI: 10.3390/molecules25204597] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 10/05/2020] [Accepted: 10/06/2020] [Indexed: 12/11/2022] Open
Abstract
Studying disease models at the molecular level is vital for drug development in order to improve treatment and prevent a wide range of human pathologies. Microbial infections are still a major challenge because pathogens rapidly and continually evolve developing drug resistance. Cancer cells also change genetically, and current therapeutic techniques may be (or may become) ineffective in many cases. The pathology of many neurological diseases remains an enigma, and the exact etiology and underlying mechanisms are still largely unknown. Viral infections spread and develop much more quickly than does the corresponding research needed to prevent and combat these infections; the present and most relevant outbreak of SARS-CoV-2, which originated in Wuhan, China, illustrates the critical and immediate need to improve drug design and development techniques. Modern day drug discovery is a time-consuming, expensive process. Each new drug takes in excess of 10 years to develop and costs on average more than a billion US dollars. This demonstrates the need of a complete redesign or novel strategies. Nuclear Magnetic Resonance (NMR) has played a critical role in drug discovery ever since its introduction several decades ago. In just three decades, NMR has become a "gold standard" platform technology in medical and pharmacology studies. In this review, we present the major applications of NMR spectroscopy in medical drug discovery and development. The basic concepts, theories, and applications of the most commonly used NMR techniques are presented. We also summarize the advantages and limitations of the primary NMR methods in drug development.
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Affiliation(s)
- Abdul-Hamid Emwas
- Core Labs, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Kacper Szczepski
- Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (K.S.); (B.G.P.); (K.C.); (L.J.)
| | - Benjamin Gabriel Poulson
- Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (K.S.); (B.G.P.); (K.C.); (L.J.)
| | - Kousik Chandra
- Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (K.S.); (B.G.P.); (K.C.); (L.J.)
| | - Ryan T. McKay
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2W2, Canada;
| | - Manel Dhahri
- Biology Department, Faculty of Science, Taibah University, Yanbu El-Bahr 46423, Saudi Arabia;
| | - Fatimah Alahmari
- Nanomedicine Department, Institute for Research and Medical, Consultations (IRMC), Imam Abdulrahman Bin Faisal University (IAU), Dammam 31441, Saudi Arabia;
| | - Lukasz Jaremko
- Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (K.S.); (B.G.P.); (K.C.); (L.J.)
| | - Joanna Izabela Lachowicz
- Department of Medical Sciences and Public Health, Università di Cagliari, Cittadella Universitaria, 09042 Monserrato, Italy
| | - Mariusz Jaremko
- Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (K.S.); (B.G.P.); (K.C.); (L.J.)
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6
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Gouilleux B, Meddour A, Lesot P. 2 H QUOSY 2D-NMR Experiments in Weakly Aligning Systems: From the Conventional to the Ultrafast Approach. Chemphyschem 2020; 21:1548-1563. [PMID: 32633460 DOI: 10.1002/cphc.202000336] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Revised: 06/03/2020] [Indexed: 11/08/2022]
Abstract
We describe three anisotropic ultrafast (UF) QUadrupolar Ordered SpectroscopY (QUOSY) 2D-NMR experiments (referred to as ADUF 2D NMR spectroscopy) designed for recording the 2 H homonuclear 2D spectra of weakly aligned (deuterated) solutes in sub-second experiment times. These new ADUF 2D experiments derive from the Q-COSY, Q-resolved and Q-DQ 2D pulse sequences (J. Am. Chem. Soc. 1999, 121, 5249) and allow the correlation between the two components of each quadrupolar doublet, and then their assignment on the basis of 2 H chemical shifts. The UF 2D pulse sequences are analyzed by using the Cartesian spin-operator formalism for spin I=1 nuclei with a small quadrupolar moment. The optimal experimental/practical conditions as well as the resolution, sensitivity and quantification issues of these ADUF 2D experiments are discussed on comparison to their conventional 2D counterparts and their analytical potentialities. Illustrative ADUF 2D experiments using deuterated achiral/prochiral/chiral solutes in poly-γ-benzyl-L-glutamate based chiral liquid crystals are presented, as well as the first examples of natural abundance deuterium (ANADUF) 2D spectrum using 14.1 T magnetic field and a basic gradient unit (53 G.cm-1 ) in oriented solvents.
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Affiliation(s)
- Boris Gouilleux
- Université Paris-Saclay, ICMMO, UMR CNRS 8182, RMN en Milieu Orienté, Bât. 410, 15, rue du Doyen Georges Poitou, UFR d'Orsay, 91405, Orsay cedex, France
| | - Abdelkrim Meddour
- Université Paris-Saclay, ICMMO, UMR CNRS 8182, RMN en Milieu Orienté, Bât. 410, 15, rue du Doyen Georges Poitou, UFR d'Orsay, 91405, Orsay cedex, France
| | - Philippe Lesot
- Université Paris-Saclay, ICMMO, UMR CNRS 8182, RMN en Milieu Orienté, Bât. 410, 15, rue du Doyen Georges Poitou, UFR d'Orsay, 91405, Orsay cedex, France
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7
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Gołowicz D, Kasprzak P, Orekhov V, Kazimierczuk K. Fast time-resolved NMR with non-uniform sampling. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2020; 116:40-55. [PMID: 32130958 DOI: 10.1016/j.pnmrs.2019.09.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 09/18/2019] [Accepted: 09/19/2019] [Indexed: 06/10/2023]
Abstract
NMR spectroscopy is a versatile tool for studying time-dependent processes: chemical reactions, phase transitions or macromolecular structure changes. However, time-resolved NMR is usually based on the simplest among available techniques - one-dimensional spectra serving as "snapshots" of the studied process. One of the reasons is that multidimensional experiments are very time-expensive due to costly sampling of evolution time space. In this review we summarize efforts to alleviate the problem of limited applicability of multidimensional NMR in time-resolved studies. We focus on techniques based on sparse or non-uniform sampling (NUS), which lead to experimental time reduction by omitting a significant part of the data during measurement and reconstructing it mathematically, adopting certain assumptions about the spectrum. NUS spectra are faster to acquire than conventional ones and thus better suited to the role of "snapshots", but still suffer from non-stationarity of the signal i.e. amplitude and frequency variations within a dataset. We discuss in detail how these instabilities affect the spectra, and what are the optimal ways of sampling the non-stationary FID signal. Finally, we discuss related areas of NMR where serial experiments are exploited and how they can benefit from the same NUS-based approaches.
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Affiliation(s)
- Dariusz Gołowicz
- Centre of New Technologies, University of Warsaw, Banacha 2C, Warsaw 02-097, Poland; Faculty of Chemistry, University of Warsaw, Pasteura 1, Warsaw 02-093, Poland.
| | - Paweł Kasprzak
- Centre of New Technologies, University of Warsaw, Banacha 2C, Warsaw 02-097, Poland; Department of Mathematical Methods in Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland.
| | - Vladislav Orekhov
- Department of Chemistry & Molecular Biology, University of Gothenburg, Box 462, 405 30 Gothenburg, Sweden.
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8
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Jacquemmoz C, Giraud F, Dumez JN. Online reaction monitoring by single-scan 2D NMR under flow conditions. Analyst 2020; 145:478-485. [DOI: 10.1039/c9an01758e] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Single-scan 2D NMR based on spatial encoding can be used to monitor chemical reactions with a flow unit in realistic reaction conditions.
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Affiliation(s)
| | - François Giraud
- ICSN
- CNRS UPR2301
- Univ. Paris Sud
- Université Paris-Saclay
- 91190 Gif sur Yvette
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9
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Cai H, Jin Y, Cui X. Feasibility of Ultrafast High-Resolution Spectroscopy in the Analysis of Molecular-Mobility-Restricted Samples in Deuterium-Free Environments. J CHIN CHEM SOC-TAIP 2018. [DOI: 10.1002/jccs.201700430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Honghao Cai
- Department of Physics; School of Science, Jimei University; Xiamen China
| | - Yali Jin
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces; Xiamen University; Xiamen China
| | - Xiaohong Cui
- Department of Electronic Science, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, State Key Laboratory of Physical Chemistry of Solid Surfaces; Xiamen University; Xiamen China
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10
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Deborde C, Moing A, Roch L, Jacob D, Rolin D, Giraudeau P. Plant metabolism as studied by NMR spectroscopy. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2017; 102-103:61-97. [PMID: 29157494 DOI: 10.1016/j.pnmrs.2017.05.001] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Revised: 05/19/2017] [Accepted: 05/22/2017] [Indexed: 05/07/2023]
Abstract
The study of plant metabolism impacts a broad range of domains such as plant cultural practices, plant breeding, human or animal nutrition, phytochemistry and green biotechnologies. Plant metabolites are extremely diverse in terms of structure or compound families as well as concentrations. This review attempts to illustrate how NMR spectroscopy, with its broad variety of experimental approaches, has contributed widely to the study of plant primary or specialized metabolism in very diverse ways. The review presents recent developments of one-dimensional and multi-dimensional NMR methods to study various aspects of plant metabolism. Through recent examples, it highlights how NMR has proved to be an invaluable tool for the global characterization of sample composition within metabolomic studies, and shows some examples of use for targeted phytochemistry, with a special focus on compound identification and quantitation. In such cases, NMR approaches are often used to provide snapshots of the plant sample composition. The review also covers dynamic aspects of metabolism, with a description of NMR techniques to measure metabolic fluxes - in most cases after stable isotope labelling. It is mainly intended for NMR specialists who would be interested to learn more about the potential of their favourite technique in plant sciences and about specific details of NMR approaches in this field. Therefore, as a practical guide, a paragraph on the specific precautions that should be taken for sample preparation is also included. In addition, since the quality of NMR metabolic studies is highly dependent on approaches to data processing and data sharing, a specific part is dedicated to these aspects. The review concludes with perspectives on the emerging methods that could change significantly the role of NMR in the field of plant metabolism by boosting its sensitivity. The review is illustrated throughout with examples of studies selected to represent diverse applications of liquid-state or HR-MAS NMR.
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Affiliation(s)
- Catherine Deborde
- INRA, UMR 1332 Biologie du Fruit et Pathologie, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France; Plateforme Métabolome Bordeaux - MetaboHUB, Centre de Génomique Fonctionnelle Bordeaux, IBVM, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France
| | - Annick Moing
- INRA, UMR 1332 Biologie du Fruit et Pathologie, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France; Plateforme Métabolome Bordeaux - MetaboHUB, Centre de Génomique Fonctionnelle Bordeaux, IBVM, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France
| | - Léa Roch
- INRA, UMR 1332 Biologie du Fruit et Pathologie, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France; Plateforme Métabolome Bordeaux - MetaboHUB, Centre de Génomique Fonctionnelle Bordeaux, IBVM, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France
| | - Daniel Jacob
- INRA, UMR 1332 Biologie du Fruit et Pathologie, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France; Plateforme Métabolome Bordeaux - MetaboHUB, Centre de Génomique Fonctionnelle Bordeaux, IBVM, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France
| | - Dominique Rolin
- Plateforme Métabolome Bordeaux - MetaboHUB, Centre de Génomique Fonctionnelle Bordeaux, IBVM, Centre INRA Bordeaux, F-33140 Villenave d'Ornon, France; Univ. Bordeaux, UMR1332, Biologie du Fruit et Pathologie, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France
| | - Patrick Giraudeau
- Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, CNRS, Université de Nantes, Faculté des Sciences, BP 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France; Institut Universitaire de France, 1 rue Descartes, 75005 Paris, France.
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11
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Gouilleux B, Charrier B, Akoka S, Felpin FX, Rodriguez-Zubiri M, Giraudeau P. Ultrafast 2D NMR on a benchtop spectrometer: Applications and perspectives. Trends Analyt Chem 2016. [DOI: 10.1016/j.trac.2016.01.014] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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12
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Lesot P, Berdagué P, Giraudeau P. Detection of quadrupolar nuclei by ultrafast 2D NMR: exploring the case of deuterated analytes aligned in chiral oriented solvents. Chem Commun (Camb) 2016; 52:2122-2125. [DOI: 10.1039/c5cc09409g] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/30/2023]
Abstract
Anisotropic 2H ultrafast (ADUF) 2D NMR spectroscopy for studying deuterated analytes dissolved in chiral liquid crystals is investigated and its analytical possibilities are evaluated.
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Affiliation(s)
- Philippe Lesot
- Equipe RMN en Milieu Orienté
- ICMMO
- UMR-CNRS 8182
- Université de Paris-Sud
- Université Paris-Saclay
| | - Philippe Berdagué
- Equipe RMN en Milieu Orienté
- ICMMO
- UMR-CNRS 8182
- Université de Paris-Sud
- Université Paris-Saclay
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13
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Akoka S, Giraudeau P. Fast hybrid multi-dimensional NMR methods based on ultrafast 2D NMR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:986-94. [PMID: 25825866 DOI: 10.1002/mrc.4237] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2015] [Revised: 02/24/2015] [Accepted: 02/25/2015] [Indexed: 05/13/2023]
Abstract
Conventional multi-dimensional (nD) NMR experiments are characterized by inherent long acquisition durations, while ultrafast (UF) NMR makes it possible to reduce to a few hundreds of milliseconds the overall acquisition duration of a complete nD NMR dataset. Although extremely promising for a number of specific applications, the UF strategy suffers from significant limitations compared with its conventional counterpart. The main limitations concern the sensitivity, the resolution, and the accessible spectral width. However, when the targeted applications are compatible with an acquisition duration between a few seconds and a few minutes, hybrid UF techniques can be used to improve the performance of UF nD NMR while remaining faster than conventional acquisitions. Much better results in terms of signal-to-noise ratio can be achieved with the multi-scan single-shot approach or with interleaved acquisitions. Even more, for the same experimental duration, and in the case of homonuclear 2D NMR, the multi-scan single-shot approach has a much higher precision than conventional 2D NMR. Interleaved 2D NMR overcomes the drawbacks of single-scan UF NMR in terms of spectral width and provides spectra for which the quality is not significantly different from that obtained with conventional 2D NMR. Finally, high spectral qualities have been demonstrated from hybrid conventional/UF 3D approaches capable of recording a whole 3D spectrum in the time needed to record a conventional 2D spectrum. This mini-review aims at describing the principles, the recent advances and the latest applications of these hybrid techniques. Copyright © 2015 John Wiley & Sons, Ltd.
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Affiliation(s)
- Serge Akoka
- EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), CNRS, UMR 6230, Université de Nantes, LUNAM Université
| | - Patrick Giraudeau
- EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), CNRS, UMR 6230, Université de Nantes, LUNAM Université
- Institut Universitaire de France, 1 rue Descartes, 75005, Paris Cedex 5, France
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14
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Bussy U, Boujtita M. Review of advances in coupling electrochemistry and liquid state NMR. Talanta 2015; 136:155-60. [DOI: 10.1016/j.talanta.2014.08.033] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Revised: 08/10/2014] [Accepted: 08/12/2014] [Indexed: 01/11/2023]
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15
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Fernández-Valle ME, Martínez-Álvarez R, Molero-Vílchez D, Pardo ZD, Sáez-Barajas E, Herrera A. 2D Ultrafast HMBC 1H,31P: Obtaining Mechanistic Details on the Michaelis–Arbuzov Reaction. J Org Chem 2014; 80:799-805. [DOI: 10.1021/jo502253p] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
| | - Roberto Martínez-Álvarez
- Departamento
de Química Orgánica I, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | | | - Zulay D. Pardo
- Departamento
de Química Orgánica I, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Elena Sáez-Barajas
- CAI
de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Antonio Herrera
- Departamento
de Química Orgánica I, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
- CAI
de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
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16
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Boisseau R, Bussy U, Giraudeau P, Boujtita M. In situ ultrafast 2D NMR spectroelectrochemistry for real-time monitoring of redox reactions. Anal Chem 2014; 87:372-5. [PMID: 25506791 DOI: 10.1021/ac5041956] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The in situ implementation of an electrochemical cell (EC) inside a nuclear magnetic resonance (NMR) spectrometer is extremely powerful to study redox reactions in real time and identify unstable reaction intermediates. Unfortunately, the implementation of an electrochemical device near the sensitive volume of an NMR probe significantly affects the quality of the NMR signal, inducing significant line broadening resulting in peak overlap and partial loss of the multiplet structures. Two-dimensional (2D) NMR spectroscopy allows one to bypass signal overlapping by spreading the peaks along two orthogonal dimensions, while providing precious information in terms of structural elucidation. Nevertheless, the acquisition of 2D NMR data suffers from long acquisition durations which are incompatible with fast redox processes taking place in solution. Here, we present a new approach to deal with this issue, consisting of coupling EC-NMR with ultrafast 2D spectroscopy, capable of recording 2D spectra much faster than conventional 2D NMR. This approach is applied to the real-time monitoring of a model reaction. Fast correlation spectroscopy (COSY) spectra are recorded every 3 min in the course of the 80 min reaction, leading to the unambiguous identification of one reaction intermediate and two reaction products. The evolution of 2D NMR peak volumes in the course of time provides further insight into the mechanism of this reaction involving an unstable intermediate. This study demonstrates the feasibility and the relevance of coupling in situ spectroelectrochemistry with ultrafast 2D spectroscopy to monitor real-time electrochemical reactions in the NMR tube.
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Affiliation(s)
- Renaud Boisseau
- Université de Nantes , CNRS, CEISAM UMR 6230, B.P. 92208, 2 rue de la Houssinière, 44322 Nantes Cedex 03, France
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17
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Mahrous EA, Farag MA. Two dimensional NMR spectroscopic approaches for exploring plant metabolome: A review. J Adv Res 2014; 6:3-15. [PMID: 25685540 PMCID: PMC4293671 DOI: 10.1016/j.jare.2014.10.003] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Revised: 10/09/2014] [Accepted: 10/11/2014] [Indexed: 01/06/2023] Open
Abstract
Today, most investigations of the plant metabolome tend to be based on either nuclear magnetic resonance (NMR) spectroscopy or mass spectrometry (MS), with or without hyphenation with chromatography. Although less sensitive than MS, NMR provides a powerful complementary technique for the identification and quantification of metabolites in plant extracts. NMR spectroscopy, well appreciated by phytochemists as a particularly information-rich method, showed recent paradigm shift for the improving of metabolome(s) structural and functional characterization and for advancing the understanding of many biological processes. Furthermore, two dimensional NMR (2D NMR) experiments and the use of chemometric data analysis of NMR spectra have proven highly effective at identifying novel and known metabolites that correlate with changes in genotype or phenotype. In this review, we provide an overview of the development of NMR in the field of metabolomics with special focus on 2D NMR spectroscopic techniques and their applications in phytomedicines quality control analysis and drug discovery from natural sources, raising more attention at its potential to reduce the gap between the pace of natural products research and modern drug discovery demand.
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Affiliation(s)
- Engy A Mahrous
- Pharmacognosy Department, College of Pharmacy, Cairo University, Cairo, Kasr el Aini st. P.B. 11562, Egypt
| | - Mohamed A Farag
- Pharmacognosy Department, College of Pharmacy, Cairo University, Cairo, Kasr el Aini st. P.B. 11562, Egypt
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Fernández I, Fernández-Valle ME, Martínez-Álvarez R, Molero-Vílchez D, Pardo ZD, Sáez-Barajas E, Sánchez Á, Herrera A. Discovering Mechanistic Insights by Application of Tandem Ultrafast Multidimensional NMR Techniques. J Org Chem 2014; 79:8086-93. [DOI: 10.1021/jo5012834] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Israel Fernández
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | | | - Roberto Martínez-Álvarez
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Dolores Molero-Vílchez
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Zulay D. Pardo
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Elena Sáez-Barajas
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Ángel Sánchez
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Antonio Herrera
- Departamento
de Química Orgánica I and ‡CAI de RMN y RSE, Facultad de Químicas, Universidad Complutense, 28040 Madrid, Spain
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19
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Guennec AL, Giraudeau P, Caldarelli S. Evaluation of Fast 2D NMR for Metabolomics. Anal Chem 2014; 86:5946-54. [DOI: 10.1021/ac500966e] [Citation(s) in RCA: 91] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Adrien Le Guennec
- Centre de Recherche CNRS de Gif-sur-Yvette, Institut
de Chimie des Substances Naturelles, Laboratoire de Chimie et Biologie
Structurales, UPR 2301,
1, avenue de la Terrasse, 91198 Gif-sur-Yvette, France
- Université de Nantes, CNRS, CEISAM UMR 6230, BP 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Patrick Giraudeau
- Université de Nantes, CNRS, CEISAM UMR 6230, BP 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Stefano Caldarelli
- Centre de Recherche CNRS de Gif-sur-Yvette, Institut
de Chimie des Substances Naturelles, Laboratoire de Chimie et Biologie
Structurales, UPR 2301,
1, avenue de la Terrasse, 91198 Gif-sur-Yvette, France
- Aix Marseille Université, Centrale Marseille,
CNRS, iSm2 UMR 7313, 13397, Marseille, France
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Giraudeau P. Quantitative 2D liquid-state NMR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2014; 52:259-272. [PMID: 24700689 DOI: 10.1002/mrc.4068] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Revised: 03/07/2014] [Accepted: 03/07/2014] [Indexed: 06/03/2023]
Abstract
Two-dimensional (2D) liquid-state NMR has a very high potential to simultaneously determine the absolute concentration of small molecules in complex mixtures, thanks to its capacity to separate overlapping resonances. However, it suffers from two main drawbacks that probably explain its relatively late development. First, the 2D NMR signal is strongly molecule-dependent and site-dependent; second, the long duration of 2D NMR experiments prevents its general use for high-throughput quantitative applications and affects its quantitative performance. Fortunately, the last 10 years has witnessed an increasing number of contributions where quantitative approaches based on 2D NMR were developed and applied to solve real analytical issues. This review aims at presenting these recent efforts to reach a high trueness and precision in quantitative measurements by 2D NMR. After highlighting the interest of 2D NMR for quantitative analysis, the different strategies to determine the absolute concentrations from 2D NMR spectra are described and illustrated by recent applications. The last part of the manuscript concerns the recent development of fast quantitative 2D NMR approaches, aiming at reducing the experiment duration while preserving - or even increasing - the analytical performance. We hope that this comprehensive review will help readers to apprehend the current landscape of quantitative 2D NMR, as well as the perspectives that may arise from it.
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Affiliation(s)
- Patrick Giraudeau
- EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes, CNRS, UMR 6230, LUNAM Université, 2 rue de la Houssinière, B.P. 92208, 44322, Nantes Cedex 03, France
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Colnago LA, Andrade FD, Souza AA, Azeredo RBV, Lima AA, Cerioni LM, Osán TM, Pusiol DJ. Why is Inline NMR Rarely Used as Industrial Sensor? Challenges and Opportunities. Chem Eng Technol 2014. [DOI: 10.1002/ceat.201300380] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Rouger L, Charrier B, Pathan M, Akoka S, Giraudeau P. Processing strategies to obtain clean interleaved ultrafast 2D NMR spectra. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 238:87-93. [PMID: 24322368 DOI: 10.1016/j.jmr.2013.11.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Revised: 11/07/2013] [Accepted: 11/13/2013] [Indexed: 06/03/2023]
Abstract
Ultrafast (UF) 2D NMR enables the acquisition of 2D spectra in a single-scan. In spite of its promising potential, the accessible spectral width is highly limited by the maximum gradient amplitude, which limits the general applicability of the method. A number of solutions have been recently described to deal with this limitation, among which stands the possibility to record several interleaved scans. However, this alternative acquisition scheme leads to numerous ghost peaks characteristic of interleaved acquisitions. These artefacts highly affect the readability of 2D spectra for structural elucidation, as well as their quantitative performance. Here, we propose several pre-FT or post-FT processing corrections to clean artefacts from interleaved ultrafast NMR spectra. Their performances are compared, and their potentialities are illustrated in a small organic molecule context. Post-FT processing corrections such as ArSub (Artefact Subtraction) or symmetrisation appear to be the most efficient ones in terms of artefact removal. While not purely single-scan, these strategies open new perspectives towards the routine use of UF 2D NMR for structural or quantitative analysis.
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Affiliation(s)
- Laetitia Rouger
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Benoît Charrier
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Meerakhan Pathan
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Serge Akoka
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
| | - Patrick Giraudeau
- Université de Nantes, CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, B.P. 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France.
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Giraudeau P, Frydman L. Ultrafast 2D NMR: an emerging tool in analytical spectroscopy. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2014; 7:129-61. [PMID: 25014342 PMCID: PMC5040491 DOI: 10.1146/annurev-anchem-071213-020208] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Two-dimensional nuclear magnetic resonance (2D NMR) spectroscopy is widely used in chemical and biochemical analyses. Multidimensional NMR is also witnessing increased use in quantitative and metabolic screening applications. Conventional 2D NMR experiments, however, are affected by inherently long acquisition durations, arising from their need to sample the frequencies involved along their indirect domains in an incremented, scan-by-scan nature. A decade ago, a so-called ultrafast (UF) approach was proposed, capable of delivering arbitrary 2D NMR spectra involving any kind of homo- or heteronuclear correlation, in a single scan. During the intervening years, the performance of this subsecond 2D NMR methodology has been greatly improved, and UF 2D NMR is rapidly becoming a powerful analytical tool experiencing an expanded scope of applications. This review summarizes the principles and main developments that have contributed to the success of this approach and focuses on applications that have been recently demonstrated in various areas of analytical chemistry--from the real-time monitoring of chemical and biochemical processes, to extensions in hyphenated techniques and in quantitative applications.
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Affiliation(s)
- Patrick Giraudeau
- Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation, UMR 6230, Université de Nantes, 44322 Nantes Cedex 03, France;
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Chen H, Zhang Z, Wang K, Cai S, Chen Z. Ultrafast 1H J-resolved spectroscopy via 2H distant dipolar field in magnetic fields with unknown spatial variations. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.09.045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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25
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Recent advances and new strategies in the NMR-based identification of natural products. Curr Opin Biotechnol 2013; 25:1-7. [PMID: 24484874 DOI: 10.1016/j.copbio.2013.08.005] [Citation(s) in RCA: 84] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 08/12/2013] [Indexed: 01/03/2023]
Abstract
Nature comprises an untapped pool of unique compounds with high structural uniqueness and exceptional properties. At the core of natural products (NPs) discovery is the identification procedure and NMR remains the most efficient method. Technical improvements such as miniaturized and crycogenic NMR probes along with hyphenation capabilities and computational support are at the center of evolution. Concepts such as dereplication and metabolomics are increasingly adopted in NPs using the power of databases, currently fragmented. The introduction and utilization of these technical and computational implements could lead NPs research to more comprehensive structure identification and new holistic perspectives.
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Bussy U, Giraudeau P, Silvestre V, Jaunet-Lahary T, Ferchaud-Roucher V, Krempf M, Akoka S, Tea I, Boujtita M. In situ NMR spectroelectrochemistry for the structure elucidation of unstable intermediate metabolites. Anal Bioanal Chem 2013; 405:5817-24. [DOI: 10.1007/s00216-013-6977-z] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2013] [Revised: 03/28/2013] [Accepted: 04/05/2013] [Indexed: 10/26/2022]
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Pathan M, Charrier B, Tea I, Akoka S, Giraudeau P. New practical tools for the implementation and use of ultrafast 2D NMR experiments. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2013; 51:168-175. [PMID: 23348689 DOI: 10.1002/mrc.3927] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2012] [Revised: 12/21/2012] [Accepted: 12/22/2012] [Indexed: 06/01/2023]
Abstract
Ultrafast (UF) 2D NMR is a very promising methodology enabling the acquisition of 2D spectra in a single scan. In the last few years, the analytical performance of UF 2D NMR has been highly increased, consequently maximizing its range of applications. However, its implementation and use by non-specialists are far from being straightforward, because of the specific acquisition and processing procedures and parameters characterizing UF NMR. To make this methodology implementable and applicable by non-specialists, we developed a simple routine capable of translating conventional parameters (spectral widths and transmitter frequencies) into specific UF parameters (gradient and chirp pulse parameters). This macro was subsequently implemented in a Web page, which is available for external users. Although the algorithm was designed for two widely used 2D experiments, COSY and HSQC, it can easily be extended to any other pulse sequence. The robustness of this routine was verified successfully on a variety of small molecules. We believe that this tool will eliminate much of the technical difficulties related to UF 2D NMR and will make the technique accessible to a wider audience of organic and analytical chemists.
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Affiliation(s)
- Meerakhan Pathan
- CNRS, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM), UMR 6230, Faculté des Sciences, Université de Nantes, BP 92208, 2 rue de la Houssinière, F-44322 Nantes Cedex 03, France
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