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Tang J, Lu F, Zhang X, Gao Z, Gong S, Zhang E. Backbone-Enabled and Ester Groups Switched δ-C(sp 2)-H Amination/Fluorination: Cyclic Dipeptides Synthesis. Org Lett 2024; 26:5130-5135. [PMID: 38843448 DOI: 10.1021/acs.orglett.4c01540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
Abstract
An efficient and concise strategy for the synthesis of cyclic dipeptides via Pd-catalyzed site-selective δ-C(sp2)-H amination/fluorination and N-to-C cyclization is disclosed. The backbone amides within the dipeptides serves as endogenous directing groups, while the desired products were switched by the C-terminal ester group. This chemistry presents a novel and robust alternative to construct cyclodipeptide fragments.
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Affiliation(s)
- Jian Tang
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
- Shengzhou Innovation Research Institute, Zhejiang Sci-Tech University, Shengzhou 312400, P. R. China
| | - Fengjie Lu
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Xinyi Zhang
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Zhenqi Gao
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Shuo Gong
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
| | - Ensheng Zhang
- Key Laboratory of Catalytic Conversion and Clean Energy in Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, P. R. China
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González JF, Dea-Ayuela MA, Huck L, Orduña JM, Bolás-Fernández F, de la Cuesta E, Haseen N, Mohammed AA, Menéndez JC. Dual Antitubercular and Antileishmanial Profiles of Quinoxaline Di- N-Oxides Containing an Amino Acidic Side Chain. Pharmaceuticals (Basel) 2024; 17:487. [PMID: 38675447 PMCID: PMC11054274 DOI: 10.3390/ph17040487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 04/02/2024] [Accepted: 04/07/2024] [Indexed: 04/28/2024] Open
Abstract
We present a new category of quinoxaline di-N-oxides (QdNOs) containing amino acid side chains with dual antituberculosis and antileishmanial activity. These compounds were synthesized by combining a regioselective 2,5-piperazinedione opening and a Beirut reaction and were screened for their activity against Mycobacterium tuberculosis and the promastigote and amastigote forms of representative species of the Leishmania genus. Most QdNOs exhibited promising antitubercular activity with IC50 values ranging from 4.28 to 49.95 μM, comparable to clinically established drugs. Structure-activity relationship analysis emphasized the importance of substituents on the aromatic ring and the side chain. Antileishmanial tests showed that some selected compounds exhibited activity comparable to the positive control miltefosine against promastigotes of Leishmania amazonensis and Leishmania donovani. Notably, some compounds were found to be also more potent and less toxic than miltefosine in intracellular amastigote assays against Leishmania amazonensis. The compound showing the best dual antitubercular and leishmanicidal profile and a good selectivity index, 4h, can be regarded as a hit compound that opens up new opportunities for the development of integrated therapies against co-infections.
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Affiliation(s)
- Juan F. González
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas, Facultad de Farmacia, Universidad Complutense, Plaza de Ramón y Cajal s/n, 28040 Madrid, Spain; (J.F.G.); (L.H.); (J.M.O.); (E.d.l.C.)
| | - María-Auxiliadora Dea-Ayuela
- Departamento de Farmacia, Facultad de Ciencias de la Salud, Universidad Cardenal Herrera-CEU, CEU Universities, c/Santiago Ramón y Cajal, Alfara del Patriarca, 46115 Valencia, Spain;
| | - Lena Huck
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas, Facultad de Farmacia, Universidad Complutense, Plaza de Ramón y Cajal s/n, 28040 Madrid, Spain; (J.F.G.); (L.H.); (J.M.O.); (E.d.l.C.)
| | - José María Orduña
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas, Facultad de Farmacia, Universidad Complutense, Plaza de Ramón y Cajal s/n, 28040 Madrid, Spain; (J.F.G.); (L.H.); (J.M.O.); (E.d.l.C.)
| | - Francisco Bolás-Fernández
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza de Ramón y Cajal s/n, 28040 Madrid, Spain;
| | - Elena de la Cuesta
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas, Facultad de Farmacia, Universidad Complutense, Plaza de Ramón y Cajal s/n, 28040 Madrid, Spain; (J.F.G.); (L.H.); (J.M.O.); (E.d.l.C.)
| | - Nazia Haseen
- AMIPRO SDN.BHD. Level 3, Bangunan Inkubator Universiti, Sains@USM, Lebuh Bukit Jambul, Bayan Lepas 11900, Pulau Pinang, Malaysia; (N.H.); (A.A.M.)
| | - Ashraf Ali Mohammed
- AMIPRO SDN.BHD. Level 3, Bangunan Inkubator Universiti, Sains@USM, Lebuh Bukit Jambul, Bayan Lepas 11900, Pulau Pinang, Malaysia; (N.H.); (A.A.M.)
| | - J. Carlos Menéndez
- Unidad de Química Orgánica y Farmacéutica, Departamento de Química en Ciencias Farmacéuticas, Facultad de Farmacia, Universidad Complutense, Plaza de Ramón y Cajal s/n, 28040 Madrid, Spain; (J.F.G.); (L.H.); (J.M.O.); (E.d.l.C.)
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Fang W, Sun BB, Qin SC, Fang LP, Yu XR, Jiang HJ, Yu J. Enantioselective Access to Chiral 2,5-Diketopiperazines via Stereogenic-at-Cobalt(III)-Catalyzed Ugi-4CRs/Cyclization Sequences. J Org Chem 2023; 88:16024-16037. [PMID: 37917565 DOI: 10.1021/acs.joc.3c02013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
An asymmetric synthesis of chiral 2,5-diketopiperazines by the Ugi-4CR/cyclization is exhibited. The employment of catalytic anionic chiral Co(III) complexes delivered α-propiolyl aminoamides in high yields with excellent enantioselectivities (31 examples, up to 95% ee). The following treatment of Ugi-adducts with PPh3 leads to chiral 2,5-DKPs without significant loss of enantioselectivities (26 examples, up to 91% ee).
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Affiliation(s)
- Wei Fang
- Department of Applied Chemistry, Anhui Province Engineering Laboratory for Green Pesticide Development and Application, and Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, P. R. China
| | - Bing-Bing Sun
- Department of Applied Chemistry, Anhui Province Engineering Laboratory for Green Pesticide Development and Application, and Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, P. R. China
| | - Shi-Cheng Qin
- Department of Applied Chemistry, Anhui Province Engineering Laboratory for Green Pesticide Development and Application, and Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, P. R. China
| | - Li-Ping Fang
- Department of Applied Chemistry, Anhui Province Engineering Laboratory for Green Pesticide Development and Application, and Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, P. R. China
| | - Xin-Ran Yu
- Department of Applied Chemistry, Anhui Province Engineering Laboratory for Green Pesticide Development and Application, and Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, P. R. China
| | - Hua-Jie Jiang
- Department of Applied Chemistry, Anhui Province Engineering Laboratory for Green Pesticide Development and Application, and Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, P. R. China
| | - Jie Yu
- Department of Applied Chemistry, Anhui Province Engineering Laboratory for Green Pesticide Development and Application, and Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, P. R. China
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4
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Koshizuka M, Shinoda K, Makino K, Shimada N. Concise Synthesis of 2,5-Diketopiperazines via Catalytic Hydroxy-Directed Peptide Bond Formations. J Org Chem 2023. [PMID: 37125993 DOI: 10.1021/acs.joc.3c00195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
2,5-Diketopiperazines (DKPs) with hydroxymethyl functional groups are essential structures found in many bioactive molecules and functional materials. We have established a simple protocol for the concise synthesis of this type of DKPs through diboronic acid anhydride-catalyzed hydroxy-directed peptide bond formations. The sequential reactions in this report, which consist of three steps, an intermolecular catalytic condensation reaction in which water is the only byproduct, a simple deprotection of the nitrogen-protecting group, and an intramolecular cyclization, enabled the synthesis of functionalized DKPs in high to excellent yields without any intermediate purification. The utility of this protocol has been demonstrated by synthesizing natural products, phomamide and Cyclo(Deala-l-Leu).
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Affiliation(s)
- Masayoshi Koshizuka
- Laboratory of Organic Chemistry for Drug Development and Medical Research Laboratories, Department of Pharmaceutical Sciences, Kitasato University, Tokyo 108-8641, Japan
| | - Kaito Shinoda
- Laboratory of Organic Chemistry for Drug Development and Medical Research Laboratories, Department of Pharmaceutical Sciences, Kitasato University, Tokyo 108-8641, Japan
| | - Kazuishi Makino
- Laboratory of Organic Chemistry for Drug Development and Medical Research Laboratories, Department of Pharmaceutical Sciences, Kitasato University, Tokyo 108-8641, Japan
| | - Naoyuki Shimada
- Laboratory of Organic Chemistry for Molecular Transformations, Department of Chemistry and the Institute of Natural Sciences, Nihon University, Tokyo 156-8550, Japan
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Huber EM. Epipolythiodioxopiperazine-Based Natural Products: Building Blocks, Biosynthesis and Biological Activities. Chembiochem 2022; 23:e202200341. [PMID: 35997236 PMCID: PMC10086836 DOI: 10.1002/cbic.202200341] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 08/19/2022] [Indexed: 01/25/2023]
Abstract
Epipolythiodioxopiperazines (ETPs) are fungal secondary metabolites that share a 2,5-diketopiperazine scaffold built from two amino acids and bridged by a sulfide moiety. Modifications of the core and the amino acid side chains, for example by methylations, acetylations, hydroxylations, prenylations, halogenations, cyclizations, and truncations create the structural diversity of ETPs and contribute to their biological activity. However, the key feature responsible for the bioactivities of ETPs is their sulfide moiety. Over the last years, combinations of genome mining, reverse genetics, metabolomics, biochemistry, and structural biology deciphered principles of ETP production. Sulfurization via glutathione and uncovering of the thiols followed by either oxidation or methylation crystallized as fundamental steps that impact expression of the biosynthesis cluster, toxicity and secretion of the metabolite as well as self-tolerance of the producer. This article showcases structure and activity of prototype ETPs such as gliotoxin and discusses the current knowledge on the biosynthesis routes of these exceptional natural products.
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Affiliation(s)
- Eva M Huber
- Chair of Biochemistry, Center for Protein Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Str. 8, 85748, Garching, Germany
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6
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Sutherland E, Harding CJ, Czekster CM. Active site remodelling of a cyclodipeptide synthase redefines substrate scope. Commun Chem 2022; 5:101. [DOI: 10.1038/s42004-022-00715-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
AbstractCyclodipeptide synthases (CDPSs) generate a wide range of cyclic dipeptides using aminoacylated tRNAs as substrates. Histidine-containing cyclic dipeptides have important biological activities as anticancer and neuroprotective molecules. Out of the 120 experimentally validated CDPS members, only two are known to accept histidine as a substrate yielding cyclo(His-Phe) and cyclo(His-Pro) as products. It is not fully understood how CDPSs select their substrates, and we must rely on bioprospecting to find new enzymes and novel bioactive cyclic dipeptides. Here, we developed an in vitro system to generate an extensive library of molecules using canonical and non-canonical amino acids as substrates, expanding the chemical space of histidine-containing cyclic dipeptide analogues. To investigate substrate selection we determined the structure of a cyclo(His-Pro)-producing CDPS. Three consecutive generations harbouring single, double and triple residue substitutions elucidated the histidine selection mechanism. Moreover, substrate selection was redefined, yielding enzyme variants that became capable of utilising phenylalanine and leucine. Our work successfully engineered a CDPS to yield different products, paving the way to direct the promiscuity of these enzymes to produce molecules of our choosing.
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Ren Z, Xie L, Okyere SK, Wen J, Ran Y, Nong X, Hu Y. Antibacterial Activity of Two Metabolites Isolated From Endophytic Bacteria Bacillus velezensis Ea73 in Ageratina adenophora. Front Microbiol 2022; 13:860009. [PMID: 35602058 PMCID: PMC9121010 DOI: 10.3389/fmicb.2022.860009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 04/06/2022] [Indexed: 12/02/2022] Open
Abstract
Ageratina adenophora, as an invasive and poisonous weed, seriously affects the ecological diversity and development of animal husbandry. Weed management practitioners have reported that it is very difficult to control A. adenophora invasion. In recent years, many researchers have focused on harnessing the endophytes of the plant as a useful resource for the development of pharmacological products for human and animal use. This study was performed to identify endophytes with antibacterial properties from A. adenophora. Agar well diffusion method and 16S rRNA gene sequencing technique were used to screen and identify endophytes with antibacterial activity. The response surface methodology and prep- high-performance liquid chromatography were used to determine the optimizing fermentation conditions and isolate secondary metabolites, respectively. UV-visible spectroscopy, infrared spectroscopy, nuclear magnetic resonance, and high-resolution mass spectrum were used to determine the structures of the isolated metabolites. From the experiment, we isolated a strain of Bacillus velezensis Ea73 (GenBank no. MZ540895) with broad-spectrum antibacterial activity. We also observed that the zone of inhibition of B. velezensis Ea73 against Staphylococcus aureus was the largest when fermentation broth contained 6.55 g/L yeast extract, 6.61 g/L peptone, 20.00 g/L NaCl at broth conditions of 7.95 pH, 51.04 h harvest time, and a temperature of 27.97°C. Two antibacterial peptides, Cyclo (L-Pro-L-Val) and Cyclo (L-Leu-L-Pro), were successfully extracted from B. velezensis Ea73. These two peptides exhibited mild inhibition against S. aureus and Escherichia coli. Therefore, we isolated B. velezensis Ea73 with antibacterial activity from A. adenophora. Hence, its metabolites, Cyclo (L-Pro-L-Val) and Cyclo (L-Leu-L-Pro), could further be developed as a substitute for human and animal antibiotics.
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Affiliation(s)
- Zhihua Ren
- Key Laboratory of Animal Disease and Human Health of Sichuan Province, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China
| | - Lei Xie
- Key Laboratory of Animal Disease and Human Health of Sichuan Province, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China
| | - Samuel Kumi Okyere
- Key Laboratory of Animal Disease and Human Health of Sichuan Province, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China
| | - Juan Wen
- Key Laboratory of Animal Disease and Human Health of Sichuan Province, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China
| | - Yinan Ran
- Key Laboratory of Animal Disease and Human Health of Sichuan Province, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China
| | - Xiang Nong
- College of Life Science, Leshan Normal University, Leshan, China
| | - Yanchun Hu
- Key Laboratory of Animal Disease and Human Health of Sichuan Province, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China
- *Correspondence: Yanchun Hu
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8
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Derince B, Gorgun K, Caglar Y, Caglar M. Architectural design of new conjugated systems carrying donor-π-acceptor groups (carbazole-CF3): Characterizations, optical, photophysical properties and DSSC's applications. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131689] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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9
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Balachandra C, Padhi D, Govindaraju T. Cyclic Dipeptide: A Privileged Molecular Scaffold to Derive Structural Diversity and Functional Utility. ChemMedChem 2021; 16:2558-2587. [PMID: 33938157 DOI: 10.1002/cmdc.202100149] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Indexed: 12/11/2022]
Abstract
Cyclic dipeptides (CDPs) are the simplest form of cyclic peptides with a wide range of applications from therapeutics to biomaterials. CDP is a versatile molecular platform endowed with unique properties such as conformational rigidity, intermolecular interactions, structural diversification through chemical synthesis, bioavailability and biocompatibility. A variety of natural products with the CDP core exhibit anticancer, antifungal, antibacterial, and antiviral activities. The inherent bioactivities have inspired the development of synthetic analogues as drug candidates and drug delivery systems. CDP plays a crucial role as conformation and molecular assembly directing core in the design of molecular receptors, peptidomimetics and fabrication of functional material architectures. In recent years, CDP has rapidly become a privileged scaffold for the design of advanced drug candidates, drug delivery agents, bioimaging, and biomaterials to mitigate numerous disease conditions. This review describes the structural diversification and multifarious biomedical applications of the CDP scaffold, discusses challenges, and provides future directions for the emerging field.
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Affiliation(s)
- Chenikkayala Balachandra
- Bioorganic Chemistry Laboratory, New Chemistry Unit and School of Advanced materials (SAMat), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur P.O., Bangalore, 560064, India
| | - Dikshaa Padhi
- Bioorganic Chemistry Laboratory, New Chemistry Unit and School of Advanced materials (SAMat), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur P.O., Bangalore, 560064, India
| | - Thimmaiah Govindaraju
- Bioorganic Chemistry Laboratory, New Chemistry Unit and School of Advanced materials (SAMat), Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur P.O., Bangalore, 560064, India
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Magini M, Bitla S, Puchakayala MR, Birudaraju S, Dhanavath R, Raju Atcha K. An efficient (TBA)2S2O8 catalyzed regioselective solvent-free one-pot synthesis of fully substituted pyrazoles. RESULTS IN CHEMISTRY 2021. [DOI: 10.1016/j.rechem.2021.100184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Maujean T, Chataigner I, Girard N, Gulea M, Bonnet D. Endocyclic Enamides Derived from Aza‐Diketopiperazines as Olefin Partners in Povarov Reaction: An Access to Tetracyclic N‐Heterocycles. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001339] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Timothé Maujean
- CNRS Laboratoire d'Innovation Thérapeutique, LIT UMR 7200, LabEx Medalis, ITI InnoVec Université de Strasbourg 67000 Strasbourg France
| | - Isabelle Chataigner
- Normandie Université 76000 Rouen France
- CNRS, Laboratoire de Chimie Théorique, LCT UMR 7616 Sorbonne Université 75005 Paris France
| | - Nicolas Girard
- CNRS Laboratoire d'Innovation Thérapeutique, LIT UMR 7200, LabEx Medalis, ITI InnoVec Université de Strasbourg 67000 Strasbourg France
| | - Mihaela Gulea
- CNRS Laboratoire d'Innovation Thérapeutique, LIT UMR 7200, LabEx Medalis, ITI InnoVec Université de Strasbourg 67000 Strasbourg France
| | - Dominique Bonnet
- CNRS Laboratoire d'Innovation Thérapeutique, LIT UMR 7200, LabEx Medalis, ITI InnoVec Université de Strasbourg 67000 Strasbourg France
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Maujean T, Girard N, Ganesan A, Gulea M, Bonnet D. Three cheers for nitrogen: aza-DKPs, the aza analogues of 2,5-diketopiperazines. RSC Adv 2020; 10:43358-43370. [PMID: 35519699 PMCID: PMC9058409 DOI: 10.1039/d0ra09457a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Accepted: 11/10/2020] [Indexed: 11/22/2022] Open
Abstract
Nitrogen-containing heterocycles represent a major source of pharmacological probes and drug candidates. To extend their molecular diversity and their potential biological activities, it is of importance to design and synthesize new N-heterocyclic scaffolds. Therefore, aza-diketopiperazines (aza-DKPs), the aza analogues of well-known 2,5-diketopiperazines (DKPs), emerged as a promising new scaffold. Although the first synthesis of an aza-DKP dates from 1951, significant developments have been made during the last decade. This feature article summarizes the different synthetic strategies to access and functionalise aza-DKPs. Their biological properties and potential applications in medicinal chemistry and drug discovery are discussed as well.
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Affiliation(s)
- Timothé Maujean
- Université de Strasbourg, CNRS, Laboratoire d'Innovation Thérapeutique, LabEX MEDALIS, Faculté de Pharmacie LIT UMR 7200 Strasbourg F-67000 France
| | - Nicolas Girard
- Université de Strasbourg, CNRS, Laboratoire d'Innovation Thérapeutique, LabEX MEDALIS, Faculté de Pharmacie LIT UMR 7200 Strasbourg F-67000 France
| | - A Ganesan
- School of Pharmacy, University of East Anglia Norwich Research Park Norwich NR4 7TJ UK
| | - Mihaela Gulea
- Université de Strasbourg, CNRS, Laboratoire d'Innovation Thérapeutique, LabEX MEDALIS, Faculté de Pharmacie LIT UMR 7200 Strasbourg F-67000 France
| | - Dominique Bonnet
- Université de Strasbourg, CNRS, Laboratoire d'Innovation Thérapeutique, LabEX MEDALIS, Faculté de Pharmacie LIT UMR 7200 Strasbourg F-67000 France
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13
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Dalberto PF, de Souza EV, Abbadi BL, Neves CE, Rambo RS, Ramos AS, Macchi FS, Machado P, Bizarro CV, Basso LA. Handling the Hurdles on the Way to Anti-tuberculosis Drug Development. Front Chem 2020; 8:586294. [PMID: 33330374 PMCID: PMC7710551 DOI: 10.3389/fchem.2020.586294] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Accepted: 09/25/2020] [Indexed: 12/17/2022] Open
Abstract
The global epidemic of tuberculosis (TB) imposes a sustained epidemiologic vigilance and investments in research by governments. Mycobacterium tuberculosis, the main causative agent of TB in human beings, is a very successful pathogen, being the main cause of death in the population among infectious agents. In 2018, ~10 million individuals were contaminated with this bacillus and became ill with TB, and about 1.2 million succumbed to the disease. Most of the success of the M. tuberculosis to linger in the population comes from its ability to persist in an asymptomatic latent state into the host and, in fact, the majority of the individuals are unaware of being contaminated. Even though TB is a treatable disease and is curable in most cases, the treatment is lengthy and laborious. In addition, the rise of resistance to first-line anti-TB drugs elicits a response from TB research groups to discover new chemical entities, preferably with novel mechanisms of action. The pathway to find a new TB drug, however, is arduous and has many barriers that are difficult to overcome. Fortunately, several approaches are available today to be pursued by scientists interested in anti-TB drug development, which goes from massively testing chemical compounds against mycobacteria, to discovering new molecular targets by genetic manipulation. This review presents some difficulties found along the TB drug development process and illustrates different approaches that might be used to try to identify new molecules or targets that are able to impair M. tuberculosis survival.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Luiz A. Basso
- Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF) and Instituto Nacional de Ciência e Tecnologia em Tuberculose (INCT-TB), Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Porto Alegre, Brazil
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Bitla S, Sagurthi SR, Dhanavath R, Puchakayala MR, Birudaraju S, Gayatri AA, Bhukya VK, Atcha KR. Design and synthesis of triazole conjugated novel 2,5-diaryl substituted 1,3,4-oxadiazoles as potential antimicrobial and anti-fungal agents. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128705] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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15
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Jassem AM, Dhumad AM, Almashal FAK. Synthesis of New Drug-Like Piperazine-2,5-diones by the Ugi/Tandem Process Catalyzed by TMSOTf and Their Molecular Docking. RUSS J GEN CHEM+ 2020. [DOI: 10.1134/s1070363220110262] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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16
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Khazi MI, Balachandra C, Shin G, Jang GH, Govindaraju T, Kim JM. Co-solvent polarity tuned thermochromic nanotubes of cyclic dipeptide-polydiacetylene supramolecular system. RSC Adv 2020; 10:35389-35396. [PMID: 35515666 PMCID: PMC9056892 DOI: 10.1039/d0ra05656a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 08/28/2020] [Indexed: 11/21/2022] Open
Abstract
The cooperative non-covalent interactions arising from structurally integrated multiple molecules have emerged as a powerful tool for the creation of functional supramolecular structures. Herein, we constructed cyclic dipeptide (CDP)–polydiacetylene (PDA) conjugate (CDP–DA) by introducing cyclo(l-Phe-l-Lys) to the linear 10,12-pentacosadiynoic acid. Owing to extensive hydrogen bonding characteristics, together with structural chirality of cyclo(l-Phe-l-Lys) and strong π–π stacking diacetylenic template, CDP–DA generated supramolecular nanotubes. The structural visualization using scanning and transmission electron microscopy revealed chloroform/methanol co-solvent polarity tuned morphological transformation of intrinsic lamellar assemblies into nanotubes comprising single-wall and multi-wall structure. The mechanistic understanding by X-ray diffraction patterns confirms bilayer organization in lamellar structure, which forms nanotubes via a gradual lamellar curling-to-scrolling process. The supramolecular CDP–DA nanotubes are transformed into the rigid covalently cross-linked blue-phase polydiacetylene (CDP–PDA) by UV irradiation. Very interestingly, the blue-phase nanotubes display reversible thermochromic changing temperature up to 150 °C with excellent repeatability over a dozen thermal cycles. This work provides an efficient strategy for precise morphological control and aiding the perspective for development in nanostructures for functional devices. Co-solvent controlled fabrication of thermo-responsive chromogenic nanotubes of a cyclic dipeptide–polydiacetylene supramolecular system.![]()
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Affiliation(s)
| | - Chenikkayala Balachandra
- Bioorganic Chemistry Laboratory, New Chemistry Unit, School of Advanced Materials (SAMat), Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur P.O. Bengaluru Karnataka 560064 India
| | - Geon Shin
- Department of Chemical Engineering, Hanyang University Seoul 04763 Korea
| | - Gang-Hee Jang
- Department of Chemical Engineering, Hanyang University Seoul 04763 Korea
| | - Thimmaiah Govindaraju
- Bioorganic Chemistry Laboratory, New Chemistry Unit, School of Advanced Materials (SAMat), Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur P.O. Bengaluru Karnataka 560064 India
| | - Jong-Man Kim
- Institute of Nano Science and Technology, Hanyang University Seoul 04763 Korea .,Department of Chemical Engineering, Hanyang University Seoul 04763 Korea
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17
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Li Y, Yuan S, Yong X, zhao T, Liu J. Research progress on small peptides in Chinese Baijiu. J Funct Foods 2020. [DOI: 10.1016/j.jff.2020.104081] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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18
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Sebastian A, Srinivasulu V, Abu-Yousef IA, Gorka O, Al-Tel TH. Domino Transformations of Ene/Yne Tethered Salicylaldehyde Derivatives: Pluripotent Platforms for the Construction of High sp 3 Content and Privileged Architectures. Chemistry 2019; 25:15710-15735. [PMID: 31365773 DOI: 10.1002/chem.201902596] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 07/30/2019] [Indexed: 12/23/2022]
Abstract
Diversity-oriented synthesis (DOS) has become a powerful synthetic tool that facilitates the construction of nature-inspired and privileged chemical space, particularly for sp3 -rich non-flat scaffolds, which are needed for phenotypic screening campaigns. These diverse compound collections led to the discovery of novel chemotypes that can modulate the protein function in underrepresented biological space. In this context, starting material-driven DOS is one of the most important tools used to build diverse compound libraries with rich stereochemical and scaffold diversity. To this end, ene/yne tethered salicylaldehyde derivatives have emerged as a pluripotent chemical platform, the products of which led to the construction of a privileged chemical space with significant biological activities. In this review, various domino transformations employing o-alkene/alkyne tethered aryl aldehyde/ketone platforms are described and discussed, with emphasis on the period from 2011 to date.
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Affiliation(s)
- Anusha Sebastian
- Sharjah Institute for Medical Research, University of Sharjah, P.O. Box 27272, Sharjah, UAE
| | - Vunnam Srinivasulu
- Sharjah Institute for Medical Research, University of Sharjah, P.O. Box 27272, Sharjah, UAE
| | - Imad A Abu-Yousef
- College of Arts and Sciences, Department of Biology, Chemistry and Environmental Sciences, American University of Sharjah, Sharjah, UAE
| | - Orive Gorka
- NanoBioCel Group, Laboratory of Pharmaceutics, School of Pharmacy, University of the Basque Country UPV/EHU, Paseo de la Universidad 7, Vitoria-Gasteiz, 01006, Spain.,Biomedical Research Networking Centre in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Vitoria-Gasteiz, Spain
| | - Taleb H Al-Tel
- Sharjah Institute for Medical Research, University of Sharjah, P.O. Box 27272, Sharjah, UAE.,College of Pharmacy, University of Sharjah, P.O. Box 27272, Sharjah, UAE
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19
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Ordóñez M, Torres-Hernández F, Viveros-Ceballos JL. Highly Diastereoselective Synthesis of Cyclic α-Aminophosphonic and α-Aminophosphinic Acids from Glycyl-l
-Proline 2,5-Diketopiperazine. European J Org Chem 2019. [DOI: 10.1002/ejoc.201901439] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Mario Ordóñez
- Centro de Investigaciones Químicas IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
| | - Fernando Torres-Hernández
- Centro de Investigaciones Químicas IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
| | - José Luis Viveros-Ceballos
- Centro de Investigaciones Químicas IICBA; Universidad Autónoma del Estado de Morelos; Av. Universidad 1001 62209 Cuernavaca Morelos Mexico
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20
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Sridevi B, Reddy Kandimalla S, Subba Reddy BV. Oxidative sp 3
C-H Functionalization of Methyl Substituted Aza-Aromatics: An Easy Access to N
-Fused Polyheterocycles. European J Org Chem 2019. [DOI: 10.1002/ejoc.201901148] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Bhima Sridevi
- Fluoro-Agrochemicals; CSIR-Indian Institute of Chemical Technology; Hyderabad 500-007 India
- Academy of Scientific and Innovative Research; New Delhi 110025 India
| | - Satheeshkumar Reddy Kandimalla
- Fluoro-Agrochemicals; CSIR-Indian Institute of Chemical Technology; Hyderabad 500-007 India
- Academy of Scientific and Innovative Research; New Delhi 110025 India
| | - B. V. Subba Reddy
- Fluoro-Agrochemicals; CSIR-Indian Institute of Chemical Technology; Hyderabad 500-007 India
- Academy of Scientific and Innovative Research; New Delhi 110025 India
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21
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Karki BS, Devi L, Pokhriyal A, Kant R, Rastogi N. Visible Light‐Induced, Metal‐Free Denitrative [3+2] Cycloaddition for Trisubstituted Pyrrole Synthesis. Chem Asian J 2019; 14:4793-4797. [DOI: 10.1002/asia.201901068] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Revised: 10/09/2019] [Indexed: 12/30/2022]
Affiliation(s)
- Bhupal S. Karki
- Medicinal & Process Chemistry DivisionCSIR-Central Drug Research Institute, Sec. 10, Jankipuram Extension Sitapur Road, P.O. Box 173 Lucknow 226031 India
- Academy of Scientific and Innovative Research New Delhi 110001 India
| | - Lalita Devi
- Medicinal & Process Chemistry DivisionCSIR-Central Drug Research Institute, Sec. 10, Jankipuram Extension Sitapur Road, P.O. Box 173 Lucknow 226031 India
- Academy of Scientific and Innovative Research New Delhi 110001 India
| | - Ayushi Pokhriyal
- Medicinal & Process Chemistry DivisionCSIR-Central Drug Research Institute, Sec. 10, Jankipuram Extension Sitapur Road, P.O. Box 173 Lucknow 226031 India
| | - Ruchir Kant
- Molecular & Structural Biology DivisionCSIR-Central Drug Research Institute, Sec. 10, Jankipuram Extension Sitapur Road, P.O. Box 173 Lucknow 226031 India
| | - Namrata Rastogi
- Medicinal & Process Chemistry DivisionCSIR-Central Drug Research Institute, Sec. 10, Jankipuram Extension Sitapur Road, P.O. Box 173 Lucknow 226031 India
- Academy of Scientific and Innovative Research New Delhi 110001 India
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22
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González JF, Alcántara AR, Doadrio AL, Sánchez-Montero JM. Developments with multi-target drugs for Alzheimer's disease: an overview of the current discovery approaches. Expert Opin Drug Discov 2019; 14:879-891. [PMID: 31165654 DOI: 10.1080/17460441.2019.1623201] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Introduction: Alzheimer's disease (AD), the most common type of dementia among older adults, is a chronic neurodegenerative pathology that causes a progressive loss of cognitive functioning with a decline of rational skills. It is well known that AD is multifactorial, so there are many different pharmacological targets that can be pursued. Areas covered: The authors highlight the strategic value of privileged scaffolds in a multi-target lead compound generation against AD, exploring the concept of multi-target design, with a special emphasis on hybrid compounds. Hence, the most promising building blocks for designing and synthesizing hybrid anti-AD drugs are shown, while also presenting the more advanced hybrid compounds. Expert opinion: The available therapeutic arsenal for AD, designed under the traditional paradigm of 'one-drug/one target/one-disease', is based on the inhibition of brain acetylcholinesterase (AChE) to increase acetylcholine (ACh) levels. However, this classical approach has not been sufficiently effective when used to treat any multifactor-depending pathology (cancer, diabetes or AD). The multi-target drug concept has been quickly adopted by medicinal chemists. The basic research developments reported in recent years are a solid foundation that will pave the way for the construction of future AD therapeutics.
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Affiliation(s)
- Juan F González
- a Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University of Madrid , Madrid , Spain
| | - Andrés R Alcántara
- a Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University of Madrid , Madrid , Spain
| | - Antonio L Doadrio
- a Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University of Madrid , Madrid , Spain
| | - Jose María Sánchez-Montero
- a Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University of Madrid , Madrid , Spain
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23
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Green and Facile Assembly of Diverse Fused N-Heterocycles Using Gold-Catalyzed Cascade Reactions in Water. Molecules 2019; 24:molecules24050988. [PMID: 30862100 PMCID: PMC6429411 DOI: 10.3390/molecules24050988] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Revised: 03/01/2019] [Accepted: 03/04/2019] [Indexed: 12/30/2022] Open
Abstract
The present study describes an AuPPh3Cl/AgSbF6-catalyzed cascade reaction between amine nucleophiles and alkynoic acids in water. This process proceeds in high step economy with water as the sole coproduct, and leads to the generation of two rings, together with the formation of three new bonds in a single operation. This green cascade process exhibits valuable features such as low catalyst loading, good to excellent yields, high efficiency in bond formation, excellent selectivity, great tolerance of functional groups, and extraordinarily broad substrate scope. In addition, this is the first example of the generation of an indole/thiophene/pyrrole/pyridine/naphthalene/benzene-fused N-heterocycle library through gold catalysis in water from readily available materials. Notably, the discovery of antibacterial molecules from this library demonstrates its high quality and potential for the identification of active pharmaceutical ingredients.
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24
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Qiao J, Jia X, Li P, Liu X, Zhao J, Zhou Y, Wang J, Liu H, Zhao F. Gold‐catalyzed Rapid Construction of Nitrogen‐containing Heterocyclic Compound Library with Scaffold Diversity and Molecular Complexity. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201801494] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Jin Qiao
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of AntibioticsChengdu University 168 Hua Guan Road Chengdu 610052 People's Republic of China
| | - Xiuwen Jia
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of AntibioticsChengdu University 168 Hua Guan Road Chengdu 610052 People's Republic of China
| | - Pinyi Li
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of AntibioticsChengdu University 168 Hua Guan Road Chengdu 610052 People's Republic of China
| | - Xiaoyan Liu
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of AntibioticsChengdu University 168 Hua Guan Road Chengdu 610052 People's Republic of China
| | - Jingwei Zhao
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of AntibioticsChengdu University 168 Hua Guan Road Chengdu 610052 People's Republic of China
| | - Yu Zhou
- State Key Laboratory of Drug Research and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia MedicaChinese Academy of Sciences 555 Zuchongzhi Road Shanghai 201203 People's Republic of China
- University of Chinese Academy of Sciences No.19 A Yuquan Road Beijing 100049 People's Republic of China
| | - Jiang Wang
- State Key Laboratory of Drug Research and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia MedicaChinese Academy of Sciences 555 Zuchongzhi Road Shanghai 201203 People's Republic of China
- University of Chinese Academy of Sciences No.19 A Yuquan Road Beijing 100049 People's Republic of China
| | - Hong Liu
- State Key Laboratory of Drug Research and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia MedicaChinese Academy of Sciences 555 Zuchongzhi Road Shanghai 201203 People's Republic of China
- University of Chinese Academy of Sciences No.19 A Yuquan Road Beijing 100049 People's Republic of China
| | - Fei Zhao
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of AntibioticsChengdu University 168 Hua Guan Road Chengdu 610052 People's Republic of China
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25
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Abstract
Communication between and within communities of cells or independent organisms is a crucial prerequisite for species survival. In response to variations in the extracellular environment, the collective behavior of cell populations can be coordinated by regulating community-level gene expression. This mechanism is strongly conserved during evolution, being shared both by bacterial communities and central nervous system cells. Notably, cyclic dipeptides (CDPs) are molecules that are implicated in these quorum sensing behaviors in both settings. Bacteria coordinate their collective behavior by producing CDPs (quorum sensing inducers) that enhance the capacity of individual members of the community to detect these signals and thus amplify the community-level response. In this review, we highlight recent data indicating that strikingly similar molecular mechanisms control communications between glial and neuronal cells to maintain homeostasis in the central nervous system, with a specific focus on the role of the thyrotropin-releasing hormone—derived CDP cyclo(His-Pro) in the protection against neurotoxic insults.
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26
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Chamorro-Arenas D, Osorio-Nieto U, Quintero L, Hernández-García L, Sartillo-Piscil F. Selective, Catalytic, and Dual C(sp3)–H Oxidation of Piperazines and Morpholines under Transition-Metal-Free Conditions. J Org Chem 2018; 83:15333-15346. [DOI: 10.1021/acs.joc.8b02564] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Delfino Chamorro-Arenas
- Centro de Investigación de la Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla (BUAP), 14 Sur Esq. San Claudio, Col. San Manuel, Puebla, Puebla 72570, México
| | - Urbano Osorio-Nieto
- Centro de Investigación de la Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla (BUAP), 14 Sur Esq. San Claudio, Col. San Manuel, Puebla, Puebla 72570, México
| | - Leticia Quintero
- Centro de Investigación de la Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla (BUAP), 14 Sur Esq. San Claudio, Col. San Manuel, Puebla, Puebla 72570, México
| | - Luís Hernández-García
- Centro de Investigación e Innovación Tecnológica, Instituto Tecnológico de Nuevo León, Av. De la Alianza No. 507, PIIT. Carretera Monterrey-Aeropuerto Km.10, Apodaca, Nuevo León 66628, México
| | - Fernando Sartillo-Piscil
- Centro de Investigación de la Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla (BUAP), 14 Sur Esq. San Claudio, Col. San Manuel, Puebla, Puebla 72570, México
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27
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Amatov T, Jangra H, Pohl R, Cisařová I, Zipse H, Jahn U. Unique Stereoselective Homolytic C-O Bond Activation in Diketopiperazine-Derived Alkoxyamines by Adjacent Amide Pyramidalization. Chemistry 2018; 24:15336-15345. [PMID: 30092124 DOI: 10.1002/chem.201803284] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Revised: 08/02/2018] [Indexed: 12/12/2022]
Abstract
Simple monocyclic diketopiperazine (DKP)-derived alkoxyamines exhibit unprecedented activation of a remote C-O bond for homolysis by amide distortion. The combination of strain-release-driven amide planarization and the persistent radical effect (PRE) enables a unique, irreversible, and quantitative trans→cis isomerization under much milder conditions than typically observed for such homolysis-limited reactions. This isomerization is shown to be general and independent of the steric and electronic nature of both the amino acid side chains and the substituents at the DKP nitrogen atoms. Homolysis rate constants are determined, and they significantly differ for both the labile trans diastereomers and the stable cis diastereomers. To reveal the factors influencing this unusual process, structural features of the kinetic trans diastereomers and thermodynamic cis diastereomers are investigated in the solid state and in solution. X-ray crystallographic analysis and computational studies indicate substantial distortion of the amide bond from planarity in the trans-alkoxyamines, and this is believed to be the cause for the facile and quantitative isomerization. Thus, these amino-acid-derived alkoxyamines are the first examples that exhibit a large thermodynamic preference for one diastereomer over the other upon thermal homolysis, and this allows controlled switching of configurations and configurational cycling.
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Affiliation(s)
- Tynchtyk Amatov
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo náměstí 2, 16610, Prague, Czech Republic.,Ludwig Maximilian University, Department of Chemistry, Butenandstrasse 5-13, 81377, München, Germany
| | - Harish Jangra
- Ludwig Maximilian University, Department of Chemistry, Butenandstrasse 5-13, 81377, München, Germany
| | - Radek Pohl
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo náměstí 2, 16610, Prague, Czech Republic
| | - Ivana Cisařová
- Department of Inorganic Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030/8, 12843, Prague, Czech Republic
| | - Hendrik Zipse
- Ludwig Maximilian University, Department of Chemistry, Butenandstrasse 5-13, 81377, München, Germany
| | - Ullrich Jahn
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo náměstí 2, 16610, Prague, Czech Republic
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28
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Yu H, Xie X, Li SM. Coupling of Guanine with cyclo-l-Trp-l-Trp Mediated by a Cytochrome P450 Homologue from Streptomyces purpureus. Org Lett 2018; 20:4921-4925. [DOI: 10.1021/acs.orglett.8b02051] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Huili Yu
- Institut für Pharmazeutische Biologie und Biotechnologie, Philipps-Universität Marburg, Robert-Koch-Straße 4, 35037 Marburg, Germany
| | - Xiulan Xie
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032 Marburg, Germany
| | - Shu-Ming Li
- Institut für Pharmazeutische Biologie und Biotechnologie, Philipps-Universität Marburg, Robert-Koch-Straße 4, 35037 Marburg, Germany
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29
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Donthiboina K, Namballa HK, Shaik SP, Nanubolu JB, Shankaraiah N, Kamal A. Iodine promoted dual oxidative C(sp 3)-H amination of 2-methyl-3-arylquinazolin-4(3H)-ones: a facile route to 1,4-diarylimidazo[1,5-a]quinazolin-5(4H)-ones. Org Biomol Chem 2018; 16:1720-1727. [PMID: 29457816 DOI: 10.1039/c7ob02677c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
An iodine promoted tandem oxidative condensation of benzylamines and 2-methylquinazolin-4-(3H)-ones was developed to yield imidazo[1,5-a]quinazolin-5(4H)-ones via dual C(sp3)-H amination under metal free conditions in a greener way using molecular oxygen as a terminal oxidant. This tandem transformation provides an efficient approach to construct various functionalized imidazo[1,5-a]quinazolin-5(4H)-ones in a straightforward manner via a sequential amination-oxidation-annulation-aromatisation.
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Affiliation(s)
- Kavitha Donthiboina
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Hyderabad-500 037, India.
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30
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Jida M, Ballet S. An Efficient One-Pot Synthesis of Chiral N-Protected 3-Substituted (Diketo)piperazines via Ugi-4CR/De-Boc/Cyclization Process. ChemistrySelect 2018. [DOI: 10.1002/slct.201702943] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Mouhamad Jida
- Research Group of Organic Chemistry; Departments of Chemistry and Bioengineering Sciences; Vrije Universiteit Brussel; Pleinlaan 2 B-1050 Brussels Belgium
| | - Steven Ballet
- Research Group of Organic Chemistry; Departments of Chemistry and Bioengineering Sciences; Vrije Universiteit Brussel; Pleinlaan 2 B-1050 Brussels Belgium
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31
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Balwe SG, Jeong YT. One-step construction of complex polyheterocycles via a sequential post-GBB cyclization/spiro ring expansion triggered by a [1,5]-hydride shift. Org Chem Front 2018. [DOI: 10.1039/c8qo00071a] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
An efficient tandem route to novel amino-indazolo[3′,2′:2,3]imidazo[1,5-c]quinazolin-6(5H)-ones has been explored.
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Affiliation(s)
- Sandip Gangadhar Balwe
- Department of Image Science and Engineering
- Pukyong National University
- Busan 608-737
- Republic of Korea
| | - Yeon Tae Jeong
- Department of Image Science and Engineering
- Pukyong National University
- Busan 608-737
- Republic of Korea
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32
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Mani GS, Rao AVS, Tangella Y, Sunkari S, Sultana F, Namballa HK, Shankaraiah N, Kamal A. Molecular iodine-catalysed oxidative CO–C(alkyl) bond cleavage of aryl/heteroaryl alkyl ketones: an efficient strategy to access fused polyheterocycles. NEW J CHEM 2018. [DOI: 10.1039/c8nj03417f] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
An efficient molecular iodine-catalysed one-pot strategy has been accomplished for the construction of various fused heterocycles under metal and oxidant free conditions.
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Affiliation(s)
- Geeta Sai Mani
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research
- Hyderabad-500037
- India
| | - Ayanampudi Venkata Subba Rao
- Division of Medicinal Chemistry and Pharmacology, CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
| | - Yellaiah Tangella
- Division of Medicinal Chemistry and Pharmacology, CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
| | - Satish Sunkari
- Division of Medicinal Chemistry and Pharmacology, CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
| | - Faria Sultana
- Division of Medicinal Chemistry and Pharmacology, CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
| | - Hari Krishna Namballa
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research
- Hyderabad-500037
- India
| | - Nagula Shankaraiah
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research
- Hyderabad-500037
- India
| | - Ahmed Kamal
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research
- Hyderabad-500037
- India
- Division of Medicinal Chemistry and Pharmacology, CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
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33
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Sunkari S, Shaik SP, Krishna NH, Subba Rao AV, Kodiripaka BG, Alarifi A, Kamal A. Molecular Iodine-Promoted Transimination for the Synthesis of 6-Phenylpyrido[2′,1′:2,3]imidazo[4,5-c
]quinoline and 6-(Pyridin-2-yl)pyrido[2′,1′:2,3]imidazo[4,5-c
]quinolines. ASIAN J ORG CHEM 2017. [DOI: 10.1002/ajoc.201700357] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Satish Sunkari
- Division of Medicinal Chemistry and Biotechnology; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - Siddiq Pasha Shaik
- Division of Medicinal Chemistry and Biotechnology; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
| | - Namballa Hari Krishna
- Division of Medicinal Chemistry and Biotechnology; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
- Department of Medicinal Chemistry; National Institute of Pharmaceutical Education and Research; Hyderabad 500036 India
| | - Ayanampudi Venkata Subba Rao
- Division of Medicinal Chemistry and Biotechnology; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
- Department of Pharmacology and Molecular Sciences; Johns Hopkins School of Medicine; 725 North Wolfe St. Baltimore Maryland 21205 United States
| | | | - Abdullah Alarifi
- Chemistry Department; College of Science; King Saud University; Riyadh 11451 Saudi Arabia
| | - Ahmed Kamal
- Division of Medicinal Chemistry and Biotechnology; CSIR-Indian Institute of Chemical Technology; Hyderabad 500007 India
- Department of Medicinal Chemistry; National Institute of Pharmaceutical Education and Research; Hyderabad 500036 India
- Chemistry Department; College of Science; King Saud University; Riyadh 11451 Saudi Arabia
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34
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Mishra AK, Choi J, Choi SJ, Baek KH. Cyclodipeptides: An Overview of Their Biosynthesis and Biological Activity. Molecules 2017; 22:molecules22101796. [PMID: 29065531 PMCID: PMC6151668 DOI: 10.3390/molecules22101796] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Revised: 10/18/2017] [Accepted: 10/19/2017] [Indexed: 01/06/2023] Open
Abstract
Cyclodipeptides (CDP) represent a diverse family of small, highly stable, cyclic peptides that are produced as secondary functional metabolites or side products of protein metabolism by bacteria, fungi, and animals. They are widespread in nature, and exhibit a broad variety of biological and pharmacological activities. CDP synthases (CDPSs) and non-ribosomal peptide synthetases (NRPSs) catalyze the biosynthesis of the CDP core structure, which is further modified by tailoring enzymes often associated with CDP biosynthetic gene clusters. In this review, we provide a comprehensive summary of CDP biosynthetic pathways and modifying enzymes. We also discuss the biological properties of some known CDPs and their possible applications in metabolic engineering.
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Affiliation(s)
- Awdhesh Kumar Mishra
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk 38541, Korea.
| | - Jaehyuk Choi
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk 38541, Korea.
| | - Seong-Jin Choi
- Department of Biotechnology, Daegu Catholic University, Gyeongsan 38430, Korea.
| | - Kwang-Hyun Baek
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk 38541, Korea.
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Pétry N, Benakki H, Clot E, Retailleau P, Guenoun F, Asserar F, Sekkat C, Métro TX, Martinez J, Lamaty F. A mechanochemical approach to access the proline-proline diketopiperazine framework. Beilstein J Org Chem 2017; 13:2169-2178. [PMID: 29114324 PMCID: PMC5669228 DOI: 10.3762/bjoc.13.217] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2017] [Accepted: 09/21/2017] [Indexed: 12/15/2022] Open
Abstract
Ball milling was exploited to prepare a substituted proline building block by mechanochemical nucleophilic substitution. Subsequently, the mechanocoupling of hindered proline amino acid derivatives was developed to provide proline-proline dipeptides under solvent-free conditions. A deprotection-cyclization sequence yielded the corresponding diketopiperazines that were obtained with a high stereoselectivity which could be explained by DFT calculations. Using this method, an enantiopure disubstituted Pro-Pro diketopiperazine was synthesized in 4 steps, making 5 new bonds using a ball mill.
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Affiliation(s)
- Nicolas Pétry
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Hafid Benakki
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France.,Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Eric Clot
- Institut Charles Gerhardt, UMR 5253 CNRS-UM-ENSCM, Université de Montpellier, Place Eugène Bataillon, cc 1501, 34095 Montpellier Cedex 5, France
| | - Pascal Retailleau
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Saclay, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
| | - Farhate Guenoun
- Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Fatima Asserar
- Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Chakib Sekkat
- Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Thomas-Xavier Métro
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Jean Martinez
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Frédéric Lamaty
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
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36
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Manna C, Pathak T. Michael Acceptor, Masked Aldehyde and Leaving Group in a Single Intermediate: Unorthodox Approach to Enantiopure Saturated Aza-Heterocycles from a Multifunctional Glyco-Substrate. ChemistrySelect 2017. [DOI: 10.1002/slct.201700332] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Chinmoy Manna
- Department of Chemistry; Indian Institute of Technology Kharagpur; Kharagpur 721302 India,
- Barauni Refinery; Indian Oil Corporation Limited; Bihar 851117 India
| | - Tanmaya Pathak
- Department of Chemistry; Indian Institute of Technology Kharagpur; Kharagpur 721302 India,
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Manchineella S, Govindaraju T. Molecular Self-Assembly of Cyclic Dipeptide Derivatives and Their Applications. Chempluschem 2016; 82:88-106. [PMID: 31961506 DOI: 10.1002/cplu.201600450] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Revised: 10/20/2016] [Indexed: 01/08/2023]
Abstract
Cyclic dipeptides (CDPs) are heterocyclic 2,5-diketopiperazines with exceptional structural rigidity, enzymatic stability, and biological activity, exhibiting a substantial tendency to take part in intermolecular interactions. Strong intermolecular interactions driven by unique hydrogen bonding patterns render CDPs with a high propensity to undergo molecular self-assembly. In this Review, the aim is to provide a comprehensive summary of design strategies used to engineer the molecular self-assembly of CDPs into functional nano- and micro-architectures and molecular gels with potential applications in biomedical and materials engineering fields.
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Affiliation(s)
- Shivaprasad Manchineella
- Bioorganic Chemistry Laboratory, New Chemistry Unit, Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur, Bengaluru, Karnataka, 560064, India
| | - T Govindaraju
- Bioorganic Chemistry Laboratory, New Chemistry Unit, Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur, Bengaluru, Karnataka, 560064, India
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38
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Huck L, González JF, de la Cuesta E, Menéndez JC. Three-component synthesis of highly functionalized aziridines containing a peptide side chain and their one-step transformation into β-functionalized α-ketoamides. Beilstein J Org Chem 2016; 12:1772-7. [PMID: 27559422 PMCID: PMC4979736 DOI: 10.3762/bjoc.12.166] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2016] [Accepted: 07/27/2016] [Indexed: 11/30/2022] Open
Abstract
A sequential three-component process is described, starting from 3-arylmethylene-2,5-piperazinediones and involving a one-pot sequence of reactions achieving regioselective opening of the 2,5-diketopiperazine ring and diastereoselective generation of an aziridine ring. This method allows the preparation of N-unprotected, trisubstituted aziridines bearing a peptide side chain under mild conditions. Their transformation into β-trifluoroacetamido-α-ketoamide and α,β-diketoamide frameworks was also achieved in a single step.
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Affiliation(s)
- Lena Huck
- Departmento de Química Orgánica y Farmacéutica, Facultad de Farmacia, Universidad Complutense, 28040 Madrid, Spain
| | - Juan F González
- Departmento de Química Orgánica y Farmacéutica, Facultad de Farmacia, Universidad Complutense, 28040 Madrid, Spain
| | - Elena de la Cuesta
- Departmento de Química Orgánica y Farmacéutica, Facultad de Farmacia, Universidad Complutense, 28040 Madrid, Spain
| | - J Carlos Menéndez
- Departmento de Química Orgánica y Farmacéutica, Facultad de Farmacia, Universidad Complutense, 28040 Madrid, Spain
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39
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Krishna NH, Saraswati AP, Sathish M, Shankaraiah N, Kamal A. Silver catalyzed domino aza-annulation/Diels–Alder cyclization of 2-ene-yne anilines: a facile one-pot access to carbazole, dihydrocarbazole and tetrahydrocarbazole frameworks. Chem Commun (Camb) 2016; 52:4581-4. [DOI: 10.1039/c6cc00633g] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
AgSbF6-catalyzed domino aza-annulation/Diels–Alder/aromatization cascade for the construction of carbazoles, dihydrocarbazoles, tetrahydrocarbazoles and 3-indolyl-substituted tetrahydrocarbazoles was achieved.
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Affiliation(s)
- Namballa Hari Krishna
- Department of Medicinal Chemistry
- National Institute of Pharmaceutical Education & Research (NIPER)
- Hyderabad-500037
- India
- Medicinal Chemistry and Pharmacology
| | - A Prasanth Saraswati
- Department of Medicinal Chemistry
- National Institute of Pharmaceutical Education & Research (NIPER)
- Hyderabad-500037
- India
| | - Manda Sathish
- Medicinal Chemistry and Pharmacology
- CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
| | - Nagula Shankaraiah
- Department of Medicinal Chemistry
- National Institute of Pharmaceutical Education & Research (NIPER)
- Hyderabad-500037
- India
| | - Ahmed Kamal
- Department of Medicinal Chemistry
- National Institute of Pharmaceutical Education & Research (NIPER)
- Hyderabad-500037
- India
- Medicinal Chemistry and Pharmacology
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Muzalevskiy VM, Ustynyuk YA, Gloriozov IP, Chertkov VA, Rulev AY, Kondrashov EV, Ushakov IA, Romanov AR, Nenajdenko VG. Experimental and Theoretical Study of an Intramolecular CF3-Group Shift in the Reactions of α-Bromoenones with 1,2-Diamines. Chemistry 2015; 21:16982-9. [PMID: 26440451 DOI: 10.1002/chem.201502706] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Indexed: 01/09/2023]
Abstract
The reactions of trifluoromethylated 2-bromoenones and N,N'-dialkyl-1,2-diamines have been studied. Depending on the structures of the starting compounds, the formation of 2-trifluoroacetylpiperazine or 3-trifluoromethylpiperazine-2-ones was observed. The mechanism of the reaction is discussed in terms of multistep processes involving sequential substitution of bromine in the starting α-bromoenones and intramolecular cyclization of the captodative aminoenones as key intermediates to form the target heterocycles. The results of theoretical calculations are in perfect agreement with the experimental data. The unique role of the trifluoromethyl group in this reaction is demonstrated.
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Affiliation(s)
- Vasily M Muzalevskiy
- Department of Chemistry, Moscow State University, Leninskie Gory, Moscow 119992 (Russia), Fax: (+7) 495-932-8846
| | - Yury A Ustynyuk
- Department of Chemistry, Moscow State University, Leninskie Gory, Moscow 119992 (Russia), Fax: (+7) 495-932-8846
| | - Igor P Gloriozov
- Department of Chemistry, Moscow State University, Leninskie Gory, Moscow 119992 (Russia), Fax: (+7) 495-932-8846
| | - Vyacheslav A Chertkov
- Department of Chemistry, Moscow State University, Leninskie Gory, Moscow 119992 (Russia), Fax: (+7) 495-932-8846
| | - Alexander Yu Rulev
- A. E. Favorsky Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, 1, Favorsky Str., Irkutsk 664033 (Russia), Fax: (+7) 3952-419346.
| | - Evgeniy V Kondrashov
- A. E. Favorsky Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, 1, Favorsky Str., Irkutsk 664033 (Russia), Fax: (+7) 3952-419346
| | - Igor A Ushakov
- A. E. Favorsky Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, 1, Favorsky Str., Irkutsk 664033 (Russia), Fax: (+7) 3952-419346
| | - Alexey R Romanov
- A. E. Favorsky Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, 1, Favorsky Str., Irkutsk 664033 (Russia), Fax: (+7) 3952-419346
| | - Valentine G Nenajdenko
- Department of Chemistry, Moscow State University, Leninskie Gory, Moscow 119992 (Russia), Fax: (+7) 495-932-8846.
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41
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Kotha S, Ali R, Saifuddin M. Diversity-oriented approach to natural product inspired pyrano-carbazole derivatives: strategic utilization of hetero-Diels–Alder reaction, Fischer indolization and the Suzuki–Miyaura cross-coupling reaction. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.09.044] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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42
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Amatov T, Pohl R, Císařová I, Jahn U. Synthesis of Bridged Diketopiperazines by Using the Persistent Radical Effect and a Formal Synthesis of Bicyclomycin. Angew Chem Int Ed Engl 2015; 54:12153-7. [DOI: 10.1002/anie.201504883] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2015] [Indexed: 01/29/2023]
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43
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Amatov T, Pohl R, Císařová I, Jahn U. Synthese überbrückter Diketopiperazine mit Hilfe des persistenten Radikaleffekts und eine formale Synthese von Bicyclomycin. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201504883] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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44
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Giessen TW, Marahiel MA. Rational and combinatorial tailoring of bioactive cyclic dipeptides. Front Microbiol 2015; 6:785. [PMID: 26284060 PMCID: PMC4519757 DOI: 10.3389/fmicb.2015.00785] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2015] [Accepted: 07/17/2015] [Indexed: 01/17/2023] Open
Abstract
Modified cyclic dipeptides represent a diverse family of microbial secondary metabolites. They display a broad variety of biological and pharmacological activities and have long been recognized as privileged structures with the ability to bind to a wide range of receptors. This is due to their conformationally constrained 2, 5-diketopiperazine (DKP) scaffold and the diverse set of DKP tailoring enzymes present in nature. After initial DKP assembly through different biosynthetic systems modifying enzymes are responsible for installing functional groups crucial for the biological activities of the resulting modified DKPs. They represent a vast and largely untapped enzyme repository very useful for synthetic biology approaches aiming at introducing structural variations into DKP scaffolds. In this review we focus on these DKP modification enzymes found in various microbial secondary metabolite gene clusters. We will give a brief overview of their distribution and highlight a select number of characterized DKP tailoring enzymes before turning to their application potential in combinatorial biosynthesis with the aim of producing molecules with improved or entirely new biological and medicinally relevant properties.
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Affiliation(s)
- Tobias W Giessen
- Department of Systems Biology, Harvard Medical School, Boston MA, USA ; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston MA, USA
| | - Mohamed A Marahiel
- Department of Chemistry, Philipps-University Marburg Marburg, Germany ; LOEWE Center for Synthetic Microbiology, Philipps-University Marburg Marburg, Germany
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45
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46
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Cabanillas A, Davies CD, Male L, Simpkins NS. Highly enantioselective access to diketopiperazines via cinchona alkaloid catalyzed Michael additions. Chem Sci 2014; 6:1350-1354. [PMID: 29560222 PMCID: PMC5811140 DOI: 10.1039/c4sc03218g] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 11/26/2014] [Indexed: 12/14/2022] Open
Abstract
Alkaloid catalysed additions to triketopiperazines gives products in high yield and er (88 : 12 to 99 : 1), including bridged hydroxy-DKPs via Michael-addition–ring closure.
Michael addition reactions of triketopiperazine (TKP) derivatives to enones, mediated by a cinchona alkaloid-derived catalyst, deliver products in high yield and enantiomeric ratio (er). Use of unsaturated ester, nitrile or sulfone partners gives bridged hydroxy-diketopiperazine (DKP) products resulting from a novel Michael addition–ring closure.
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Affiliation(s)
- Alejandro Cabanillas
- School of Chemistry , University of Birmingham , Edgbaston , Birmingham , B15 2TT UK
| | | | - Louise Male
- School of Chemistry , University of Birmingham , Edgbaston , Birmingham , B15 2TT UK
| | - Nigel S Simpkins
- School of Chemistry , University of Birmingham , Edgbaston , Birmingham , B15 2TT UK
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47
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One-Pot α-Amidosulfone-Mediated Variation of the Pictet-Spengler Tetrahydroisoquinoline Synthesis, Suitable for Amide-Type Substrates. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402487] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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48
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Regenass P, Margathe JF, Mann A, Suffert J, Hibert M, Girard N, Bonnet D. Diastereoselective synthesis of novel aza-diketopiperazines via a domino cyclohydrocarbonylation/addition process. Chem Commun (Camb) 2014; 50:9657-60. [DOI: 10.1039/c4cc03660c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A short and diastereoselective synthesis of newly reported aza-diketopiperazine (aza-DKP) scaffolds starting from amino-acids was achieved using domino Rh(i)-catalyzed cyclohydrocarbonylation/addition.
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Affiliation(s)
- Pierre Regenass
- Laboratoire d'Innovation Thérapeutique
- UMR7200 CNRS/Université de Strasbourg
- Labex Médalis
- Faculté de Pharmacie
- 67412 Illkirch, France
| | - Jean-François Margathe
- Laboratoire d'Innovation Thérapeutique
- UMR7200 CNRS/Université de Strasbourg
- Labex Médalis
- Faculté de Pharmacie
- 67412 Illkirch, France
| | - André Mann
- Laboratoire d'Innovation Thérapeutique
- UMR7200 CNRS/Université de Strasbourg
- Labex Médalis
- Faculté de Pharmacie
- 67412 Illkirch, France
| | - Jean Suffert
- Laboratoire d'Innovation Thérapeutique
- UMR7200 CNRS/Université de Strasbourg
- Labex Médalis
- Faculté de Pharmacie
- 67412 Illkirch, France
| | - Marcel Hibert
- Laboratoire d'Innovation Thérapeutique
- UMR7200 CNRS/Université de Strasbourg
- Labex Médalis
- Faculté de Pharmacie
- 67412 Illkirch, France
| | - Nicolas Girard
- Laboratoire d'Innovation Thérapeutique
- UMR7200 CNRS/Université de Strasbourg
- Labex Médalis
- Faculté de Pharmacie
- 67412 Illkirch, France
| | - Dominique Bonnet
- Laboratoire d'Innovation Thérapeutique
- UMR7200 CNRS/Université de Strasbourg
- Labex Médalis
- Faculté de Pharmacie
- 67412 Illkirch, France
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49
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Samala S, Mandadapu AK, Saifuddin M, Kundu B. Gold-Catalyzed Sequential Alkyne Activation: One-Pot Synthesis of NH-Carbazoles via Cascade Hydroarylation of Alkyne/6-Endo-Dig Carbocyclization Reactions. J Org Chem 2013; 78:6769-74. [DOI: 10.1021/jo400799b] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
| | | | | | - Bijoy Kundu
- Academy of Scientific and Innovative Research, New Delhi 110001, India
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50
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Barman AK, Verma S. Solid state structures and solution phase self-assembly of clicked mannosylated diketopiperazines. RSC Adv 2013. [DOI: 10.1039/c3ra42310g] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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