1
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Gadde S, Kleynhans A, Holien JK, Bhadbhade M, Nguyen PLD, Mittra R, Yu TT, Carter DR, Parker MW, Marshall GM, Cheung BB, Kumar N. Pyrimido[1,2-a]benzimidazoles as inhibitors of oncoproteins ubiquitin specific protease 5 and MYCN in the childhood cancer neuroblastoma. Bioorg Chem 2023; 136:106462. [PMID: 37060785 DOI: 10.1016/j.bioorg.2023.106462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 02/16/2023] [Accepted: 03/07/2023] [Indexed: 03/31/2023]
Abstract
The MYCN oncogene and histone deacetylases (HDACs) are key driver genes in the childhood cancer, neuroblastoma. We recently described a novel pyridobenzimidazole analogue, SE486-11, which enhanced the therapeutic effectiveness of HDAC inhibitors by increasing MYCN ubiquitination through effects on the deubiquitinase, ubiquitin-specific protease 5 (USP5). Here we describe the synthesis of a novel series of pyrimido[1,2-a]benzimidazole derivatives, and an evaluation of their cytopathic effects against non-malignant and human neuroblastoma cell lines. Among the tested analogues, 4-(4-methoxyphenyl)benzo[4,5]imidazo[1,2-a]pyrimidine (3a) was the most active compound against neuroblastoma cells (IC50 ≤ 2 µM), with low cytotoxicity (IC50 ≥ 15 µM) to normal cells. We show compound 3a bound to USP5 protein (Kd = 0.47 µM) in vitro and synergistically enhanced the efficacy of HDAC inhibitors against neuroblastoma cells. Moreover, knockdown of USP5 and MYCN in treated neuroblastoma cells showed that both USP5 and MYCN expression was necessary for the cytopathic activity of compound 3a, thus providing a clinically relevant rationale for further development of this of pyrimido[1,2-a]benzimidazole.
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Affiliation(s)
- Satyanarayana Gadde
- School of Chemistry, UNSW Sydney, NSW 2052, Australia; Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia
| | - Ane Kleynhans
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia
| | - Jessica K Holien
- School of Science, STEM College, RMIT University, Melbourne, VIC 3001, Australia
| | | | | | - Ritu Mittra
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia
| | - Tsz Tin Yu
- School of Chemistry, UNSW Sydney, NSW 2052, Australia
| | - Daniel R Carter
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia; School of Biomedical Engineering, University of Technology Sydney, Australia
| | - Michael W Parker
- School of Science, STEM College, RMIT University, Melbourne, VIC 3001, Australia
| | - Glenn M Marshall
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia; Kids Cancer Centre, Sydney Children's Hospital, Randwick, NSW, Australia.
| | - Belamy B Cheung
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia; School of Clinical Medicine, UNSW Medicine & Health, UNSW Sydney, NSW, Australia.
| | - Naresh Kumar
- School of Chemistry, UNSW Sydney, NSW 2052, Australia.
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2
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Saeed HY, Farooqui M, Durrani AN. Convenient and highly efficient microwave-assisted synthesis of 2-Arylimidazo[1,2-a]pyrimidine-3-carbaldehydes in glycerol. SYNTHETIC COMMUN 2022. [DOI: 10.1080/00397911.2022.2158746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Hani Y. Saeed
- Department of Chemistry, Rafiq Zakaria College for Women, Aurangabad, India
| | - Maqdoom Farooqui
- Department of Chemistry, Rafiq Zakaria College for Women, Aurangabad, India
| | - Ayesha N. Durrani
- Department of Chemistry, Rafiq Zakaria College for Women, Aurangabad, India
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3
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H3PMo7W5O40·24H2O catalyzed access to fused pyrazolopyranopyrimidine derivatives via one-pot multicomponent synthesis: green chemistry. MONATSHEFTE FUR CHEMIE 2021. [DOI: 10.1007/s00706-021-02868-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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4
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Fedotov VV, Rusinov VL, Ulomsky EN, Mukhin EM, Gorbunov EB, Chupakhin ON. Pyrimido[1,2- a]benzimidazoles: synthesis and perspective of their pharmacological use. Chem Heterocycl Compd (N Y) 2021; 57:383-409. [PMID: 34024913 PMCID: PMC8121645 DOI: 10.1007/s10593-021-02916-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 01/12/2021] [Indexed: 01/26/2023]
Abstract
The review presents data on the synthesis as well as studies of biological activity of new derivatives of pyrimido[1,2-a]benzimidazoles published over the last decade. The bibliography of the review includes 136 sources.
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Affiliation(s)
- Victor V. Fedotov
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
| | - Vladimir L. Rusinov
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
| | - Evgeny N. Ulomsky
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
| | - Evgeny M. Mukhin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
| | - Evgeny B. Gorbunov
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
| | - Oleg N. Chupakhin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
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5
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Jayashree S, Shivashankar K. Sulfated Copper Oxide Catalyzed One-Pot Synthesis of N-Fused Benzimidazolo/Benzothiazolo Pyrimidines. Polycycl Aromat Compd 2021. [DOI: 10.1080/10406638.2019.1625065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
| | - Kalegowda Shivashankar
- P.G. Department of Chemistry, Central College Campus, Bangalore University, Bangalore, Karnataka, India
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6
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Shang L, Feng Y, Gao X, Chen Z, Xia Y, Jin W, Liu C. DMAP‐Catalyzed
C—N Bond Formation for Diverse Synthesis of Imidazo[1,2‐
a
]pyrimidine and Pyrimido[1,2‐
a
]benzimidazole Derivatives. CHINESE J CHEM 2020. [DOI: 10.1002/cjoc.202000214] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Le‐Le Shang
- The Key Laboratory of Oil and Gas Fine Chemicals, Ministry of Education & Xinjiang Uygur Autonomous Region, Urumqi Key Laboratory of Green Catalysis and Synthesis Technology, School of Chemistry and Chemical Engineering, Xinjiang University Urumqi Xinjiang 830046 China
| | - Yun Feng
- The Key Laboratory of Oil and Gas Fine Chemicals, Ministry of Education & Xinjiang Uygur Autonomous Region, Urumqi Key Laboratory of Green Catalysis and Synthesis Technology, School of Chemistry and Chemical Engineering, Xinjiang University Urumqi Xinjiang 830046 China
| | - Xing‐Lian Gao
- The Key Laboratory of Oil and Gas Fine Chemicals, Ministry of Education & Xinjiang Uygur Autonomous Region, Urumqi Key Laboratory of Green Catalysis and Synthesis Technology, School of Chemistry and Chemical Engineering, Xinjiang University Urumqi Xinjiang 830046 China
| | - Zi‐Ren Chen
- The Key Laboratory of Oil and Gas Fine Chemicals, Ministry of Education & Xinjiang Uygur Autonomous Region, Urumqi Key Laboratory of Green Catalysis and Synthesis Technology, School of Chemistry and Chemical Engineering, Xinjiang University Urumqi Xinjiang 830046 China
| | - Yu Xia
- The Key Laboratory of Oil and Gas Fine Chemicals, Ministry of Education & Xinjiang Uygur Autonomous Region, Urumqi Key Laboratory of Green Catalysis and Synthesis Technology, School of Chemistry and Chemical Engineering, Xinjiang University Urumqi Xinjiang 830046 China
| | - Wei‐Wei Jin
- The Key Laboratory of Oil and Gas Fine Chemicals, Ministry of Education & Xinjiang Uygur Autonomous Region, Urumqi Key Laboratory of Green Catalysis and Synthesis Technology, School of Chemistry and Chemical Engineering, Xinjiang University Urumqi Xinjiang 830046 China
| | - Chen‐Jiang Liu
- The Key Laboratory of Oil and Gas Fine Chemicals, Ministry of Education & Xinjiang Uygur Autonomous Region, Urumqi Key Laboratory of Green Catalysis and Synthesis Technology, School of Chemistry and Chemical Engineering, Xinjiang University Urumqi Xinjiang 830046 China
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7
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Shinde VV, Jung S. Succinyl-β-cyclodextrin–driven synthesis of a nitrogen-fused five-ring heterocycle using GBB-based [4 + 1] cycloaddition via supramolecular host–guest interactions. Tetrahedron 2019. [DOI: 10.1016/j.tet.2018.12.059] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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8
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Wu J, Luo H, Wang T, Sun H, Zhang Q, Chai Y. Diverse synthesis of pyrimido[1,2-a]benzimidazoles and imidazo[2,1-b]benzothiazoles via CuI-catalyzed decarboxylic multicomponent reactions of heterocyclic azoles, aldehydes and alkynecarboxylic acids. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.01.009] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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9
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Murlykina MV, Morozova AD, Zviagin IM, Sakhno YI, Desenko SM, Chebanov VA. Aminoazole-Based Diversity-Oriented Synthesis of Heterocycles. Front Chem 2018; 6:527. [PMID: 30555815 PMCID: PMC6282055 DOI: 10.3389/fchem.2018.00527] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Accepted: 10/11/2018] [Indexed: 02/02/2023] Open
Abstract
The comprehensive review contains the analysis of literature data concerning reactions of heterocyclization of aminoazoles and demonstrates the application of these types of transformations in diversity-oriented synthesis. The review is oriented to wide range of chemists working in the field of organic synthesis and both experimental and theoretical studies of nitrogen-containing heterocycles.
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Affiliation(s)
- Maryna V Murlykina
- Department of Organic and Bioorganic Chemistry, State Scientific Institution "Institute for Single Crystals", National Academy of Sciences of Ukraine (NAS), Kharkiv, Ukraine
| | - Alisa D Morozova
- Department of Organic and Bioorganic Chemistry, State Scientific Institution "Institute for Single Crystals", National Academy of Sciences of Ukraine (NAS), Kharkiv, Ukraine
| | - Ievgen M Zviagin
- Department of Organic and Bioorganic Chemistry, State Scientific Institution "Institute for Single Crystals", National Academy of Sciences of Ukraine (NAS), Kharkiv, Ukraine
| | - Yana I Sakhno
- Department of Organic and Bioorganic Chemistry, State Scientific Institution "Institute for Single Crystals", National Academy of Sciences of Ukraine (NAS), Kharkiv, Ukraine
| | - Sergey M Desenko
- Department of Organic and Bioorganic Chemistry, State Scientific Institution "Institute for Single Crystals", National Academy of Sciences of Ukraine (NAS), Kharkiv, Ukraine.,Chemistry Faculty, Karazin Kharkiv National University, Kharkiv, Ukraine
| | - Valentyn A Chebanov
- Department of Organic and Bioorganic Chemistry, State Scientific Institution "Institute for Single Crystals", National Academy of Sciences of Ukraine (NAS), Kharkiv, Ukraine.,Chemistry Faculty, Karazin Kharkiv National University, Kharkiv, Ukraine
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10
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Jadhav AM, Lim KT, Jeong YS, Jeong YT. A metal-free C–C/C–O bond formation for the synthesis of 2-amino-5-oxo-4-aryl-4 H,5 H-pyrano[3,2- c]chromene-3-carboxamide catalyzed by polystyrene-supported p-toluenesulfonic acid (PS-PTSA). SYNTHETIC COMMUN 2018. [DOI: 10.1080/00397911.2018.1490770] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Amol Maruti Jadhav
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
| | - Kwon Taek Lim
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
| | - Yong Seok Jeong
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
| | - Yeon Tae Jeong
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
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11
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Rawat M, Rawat DS. Copper oxide nanoparticle catalysed synthesis of imidazo[1,2-a]pyrimidine derivatives, their optical properties and selective fluorescent sensor towards zinc ion. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.05.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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12
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Mokhtar M, Saleh TS, Ahmed NS, Al-Bogami AS. A Green Mechanochemical One-Pot Three-Component Domino Reaction Synthesis of Polysubstituted Azoloazines Containing Benzofuran Moiety: Cytotoxic Activity Against HePG2 Cell Lines. Polycycl Aromat Compd 2018. [DOI: 10.1080/10406638.2018.1464036] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Mohamed Mokhtar
- Chemistry Department, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
- Physical Chemistry Department, Green Chemistry Department, Medicinal Chemistry Department, National Research Centre, Dokki, Cairo, Egypt
| | - Tamer S. Saleh
- Physical Chemistry Department, Green Chemistry Department, Medicinal Chemistry Department, National Research Centre, Dokki, Cairo, Egypt
- Chemistry Department, Faculty of Science, University of Jeddah, Jeddah, Saudi Arabia
| | - Nesreen S. Ahmed
- Chemistry Department, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
- Physical Chemistry Department, Green Chemistry Department, Medicinal Chemistry Department, National Research Centre, Dokki, Cairo, Egypt
| | - Abdullah S. Al-Bogami
- Chemistry Department, Faculty of Science, University of Jeddah, Jeddah, Saudi Arabia
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13
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Jadhav AM, Kim YI, Lim KT, Jeong YT. Application of p -TSA in the one pot synthesis of N -methyl-3-nitro-aryl-benzo[4,5]imidazo[1,2- a ]pyrimidin-2-amine. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.01.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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14
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Balwe SG, Jeong YT. An approach towards the synthesis of novel fused nitrogen tricyclic heterocyclic scaffolds via GBB reaction. Org Biomol Chem 2018; 16:1287-1296. [DOI: 10.1039/c7ob02933k] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
A concise and efficient one-pot synthesis of novel N-fused tricyclic derivatives has been developed by using the Groebke–Blackburn–Bienaymé (GBB) reaction, which involved the reaction of 3-amino-1H-indazoles, aldehydes and isonitriles to afford 2-aryl-5H-imidazo[1,2-b]indazol-3-amine derivatives via a formal [4 + 1] cycloaddition reaction.
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Affiliation(s)
- Sandip Gangadhar Balwe
- Department of Image Science and Engineering
- Pukyong National University
- Busan 608-737
- Republic of Korea
| | - Yeon Tae Jeong
- Department of Image Science and Engineering
- Pukyong National University
- Busan 608-737
- Republic of Korea
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15
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An efficient and green synthesis of benzo[4,5]imidazo[1,2-a]pyrimidines using highly active and stable poly acrylic acid-supported layered double hydroxides. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.01.037] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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16
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Shinde VV, Lee SM, Oh JS, Lim KT, Jeong YT. Ultrasound-assisted synthesis of diversely functionalized tetrahydro-1H-Indole-4(5H)-one using Brønsted base silica sodium carbonate (SSC) as a catalyst under solvent-free conditions. SYNTHETIC COMMUN 2016. [DOI: 10.1080/00397911.2016.1189575] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Vijay Vilas Shinde
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
| | - Seung Min Lee
- LED Convergence Engineering Department, Specialized Graduate School Science and Technology Convergence, Pukyong National University, Busan, Republic of Korea
| | - Jeong Su Oh
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
| | - Kwon Taek Lim
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
| | - Yeon Tae Jeong
- Department of Image Science and Engineering, Pukyong National University, Busan, Republic of Korea
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17
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Reddy AVS, Jeong YT. Highly efficient and facile synthesis of densely functionalized thiazolo[3,2- a ]chromeno[4,3- d ]pyrimidin-6(7 H )-ones using [Bmim]BF 4 as a reusable catalyst under solvent-free conditions. Tetrahedron 2016. [DOI: 10.1016/j.tet.2015.11.010] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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18
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Dastkhoon S, Tavakoli Z, Khodabakhshi S, Baghernejad M, Abbasabadi MK. Nanocatalytic one-pot, four-component synthesis of some new triheterocyclic compounds consisting of pyrazole, pyran, and pyrimidinone rings. NEW J CHEM 2015. [DOI: 10.1039/c5nj01046b] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new series of triheterocyclic compounds containing pyrazole, pyran, and pyrimidinone rings was synthesized via a one-pot condensation of ethylacetoacetate, hydrazine hydrate, barbituric acid, and aromatic aldehydes in the presence of catalytic amounts of titanium dioxide nanowires.
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Affiliation(s)
- Sadegh Dastkhoon
- Department of Chemistry
- Gachsaran Branch
- Islamic Azad University
- Gachsaran
- Iran
| | - Zaiba Tavakoli
- Department of Chemistry
- Gachsaran Branch
- Islamic Azad University
- Gachsaran
- Iran
| | - Saeed Khodabakhshi
- Young Researchers and Elite Club
- Robatkarim Branch
- Islamic Azad University
- Robatkarim
- Iran
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