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Liang B, Li R, Li L, Tang M, Li X, Su C, Liao H. Silver-promoted solid-phase guanidinylation enables the first synthesis of arginine glycosylated Samoamide A cyclopeptide analogue. Front Chem 2023; 10:1040216. [PMID: 36688048 PMCID: PMC9846560 DOI: 10.3389/fchem.2022.1040216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 12/19/2022] [Indexed: 01/06/2023] Open
Abstract
Cyclization and glycosylation serve as effective approaches for enhancing the drug properties of peptides. Distinct from typical glycosylation, atypical arginine N-glycosylation has drawn increasing attention due to its fundamental role in various cellular procedures and signaling pathways. We previously developed a robust strategy for constructing arginine N-glycosylated peptides characterized by silver-promoted solid-phase guanidinylation. Modeled after cyclic octapeptide Samoamide A, an antitumor peptide composed of eight hydrophobic amino acids extracted from cyanobacteria, herein we first performed arginine scanning to determine an optimal position for replacement with arginine. Consequently, the first synthesis of arginine glycosylated Samoamide A cyclopeptide analogue was described combining solid-phase glycosylation with solution-phase cyclization. The resultant SA-HH-TT displayed enhanced water solubility compared with the non-glycosylated SA-HH-TT. Notably, our method provides a universal strategy for synthesizing arginine N-glycosylated cyclopeptides.
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Affiliation(s)
- Bingxin Liang
- School of Pharmacy, Chengdu Medical College, Chengdu, China
| | - Rong Li
- School of Pharmacy, Chengdu Medical College, Chengdu, China
| | - Linji Li
- School of Pharmacy, Chengdu Medical College, Chengdu, China
| | - Ming Tang
- School of Pharmacy, Chengdu Medical College, Chengdu, China
| | - Xiang Li
- School of Pharmacy, Second Military Medical University, Shanghai, China,*Correspondence: Xiang Li, ; Chunli Su, ; Hongli Liao,
| | - Chunli Su
- School of Public Health, Chengdu Medical College, Chengdu, China,*Correspondence: Xiang Li, ; Chunli Su, ; Hongli Liao,
| | - Hongli Liao
- School of Pharmacy, Chengdu Medical College, Chengdu, China,*Correspondence: Xiang Li, ; Chunli Su, ; Hongli Liao,
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Jiang Y, Cheng Z, Chen S, Li L, Zhang W, Lix X, Hu H. A toolbox of diverse arginine N-glycosylated peptides and specific antibodies. Bioorg Chem 2022; 130:106267. [DOI: 10.1016/j.bioorg.2022.106267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 10/30/2022] [Accepted: 11/06/2022] [Indexed: 11/13/2022]
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Qu Q, Pan M, Gao S, Zheng Q, Yu Y, Su J, Li X, Hu H. A Highly Efficient Synthesis of Polyubiquitin Chains. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2018; 5:1800234. [PMID: 30027052 PMCID: PMC6051384 DOI: 10.1002/advs.201800234] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/11/2018] [Revised: 04/17/2018] [Indexed: 06/08/2023]
Abstract
A robust, microwave-assisted, highly efficient, solid-phase peptide synthesis method for preparing isopeptide-linked 62-mer and 76-mer isoubiquitins and polyubiquitin is developed. The strategy avoids the use of costly resins and pseudoprolines, and the isopeptide-linked building blocks can be assembled with high initial purity within 1 day. All seven diubiquitins are successfully synthesized on a multi-milligram scale; a four-segment, three-ligation method is used to obtain a K33-/K11-linked mixed triubiquitin in excellent yield. Circular dichroism and crystallographic analyses are used to verify the structures of the well-folded, synthetic polyubiquitin chains. The facile synthetic strategy is expected to be generally applicable for the rapid synthesis of isopeptide-linked isoUbs and to pave the way for the study of longer polyubiquitin chains.
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Affiliation(s)
- Qian Qu
- School of PharmacySecond Military Medical University325 Guohe RoadShanghai200433China
- Tsinghua‐Peking Center for Life SciencesTsinghua UniversityBeijing100084China
| | - Man Pan
- Tsinghua‐Peking Center for Life SciencesTsinghua UniversityBeijing100084China
| | - Shuai Gao
- Tsinghua‐Peking Center for Life SciencesTsinghua UniversityBeijing100084China
| | - Qing‐Yun Zheng
- Tsinghua‐Peking Center for Life SciencesTsinghua UniversityBeijing100084China
| | - Yuan‐Yuan Yu
- Tsinghua‐Peking Center for Life SciencesTsinghua UniversityBeijing100084China
| | - Jia‐Can Su
- Changhai HospitalSecond Military Medical University168 Changhai RoadShanghai200433China
| | - Xiang Li
- School of PharmacySecond Military Medical University325 Guohe RoadShanghai200433China
| | - Hong‐Gang Hu
- School of PharmacySecond Military Medical University325 Guohe RoadShanghai200433China
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Wang S, Harmgarth N, Liebing P, Edelmann FT. Crystal and mol-ecular structures of two silver(I) amidinates, including an unexpected co-crystal with a lithium amidinate. Acta Crystallogr E Crystallogr Commun 2016; 72:1786-1790. [PMID: 27980831 PMCID: PMC5137609 DOI: 10.1107/s2056989016017680] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2016] [Accepted: 11/05/2016] [Indexed: 11/16/2022]
Abstract
The silver(I) amidinates bis-[μ-N1,N2-bis-(propan-2-yl)benzamidinato-κ2N1:N2]disilver(I), [Ag2(C13H19N2)2] or [Ag{PhC(N i Pr)2}]2 (1), and bis-(μ-N1,N2-di-cyclohexyl-3-cyclo-propyl-propynamidinato-κ2N1:N2)disilver(I), [Ag2(C18H27N2)2] or [Ag{cyclo-C3H5-C≡C-C(NCy)2}]2 (2a), exist as centrosymmetric dimers with a planar Ag2N4C2 ring and a common linear coordination of the metal atoms in the crystalline state. Moiety 2a forms a co-crystal with the related lithium amidinate, namely bis-(μ-N1,N2-di-cyclo-hexyl-3-cyclo-propyl-propynamidinato-κ2N1:N2)disilver(I) bis-(μ-N1,N2-di-cyclo-hexyl-3-cyclo-propyl-propynamidinato-κ3N1,N2:N1)bis-(tetra-hydro-furan-κO)lithium(I) toluene monosolvate, [Ag2(C18H27N2)2][Li2(C18H27N2)2(C4H8O)2]·C7H8 or [Ag{cyclo-C3H5-C≡C-C(NCy)2}]2[Li{cyclo-C3H5-C≡C-C(NCy)2}(THF)]2·C7H8, composed as 2a × 2b × toluene. The lithium moiety 2b features a typical ladder-type dimeric structure with a distorted tetra-hedral coordination of the metal atoms. In the silver(I) derivatives 1 and 2a, the amidinate ligand adopts a μ-κN:κN' coordination, while it is a μ-κN:κN:κN'-coordination in the case of lithium derivative 2b.
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Affiliation(s)
- Sida Wang
- Chemisches Institut der Otto-von-Guericke-Universität Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany
| | - Nicole Harmgarth
- Chemisches Institut der Otto-von-Guericke-Universität Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany
| | - Phil Liebing
- Chemisches Institut der Otto-von-Guericke-Universität Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany
| | - Frank T. Edelmann
- Chemisches Institut der Otto-von-Guericke-Universität Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany
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Li X, Krafczyk R, Macošek J, Li YL, Zou Y, Simon B, Pan X, Wu QY, Yan F, Li S, Hennig J, Jung K, Lassak J, Hu HG. Resolving the α-glycosidic linkage of arginine-rhamnosylated translation elongation factor P triggers generation of the first Arg Rha specific antibody. Chem Sci 2016; 7:6995-7001. [PMID: 28451135 PMCID: PMC5363779 DOI: 10.1039/c6sc02889f] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Accepted: 07/20/2016] [Indexed: 12/23/2022] Open
Abstract
A previously discovered posttranslational modification strategy - arginine rhamnosylation - is essential for elongation factor P (EF-P) dependent rescue of polyproline stalled ribosomes in clinically relevant species such as Pseudomonas aeruginosa and Neisseria meningitidis. However, almost nothing is known about this new type of N-linked glycosylation. In the present study we used NMR spectroscopy to show for the first time that the α anomer of rhamnose is attached to Arg32 of EF-P, demonstrating that the corresponding glycosyltransferase EarP inverts the sugar of its cognate substrate dTDP-β-l-rhamnose. Based on this finding we describe the synthesis of an α-rhamnosylated arginine containing peptide antigen in order to raise the first anti-rhamnosyl arginine specific antibody (anti-ArgRha). Using ELISA and Western Blot analyses we demonstrated both its high affinity and specificity without any cross-reactivity to other N-glycosylated proteins. Having the anti-ArgRha at hand we were able to visualize endogenously produced rhamnosylated EF-P. Thus, we expect the antibody to be not only important to monitor EF-P rhamnosylation in diverse bacteria but also to identify further rhamnosyl arginine containing proteins. As EF-P rhamnosylation is essential for pathogenicity, our antibody might also be a powerful tool in drug discovery.
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Affiliation(s)
- Xiang Li
- Department of Organic Chemistry , School of Pharmacy , Second Military Medical University , Shanghai 200433 , China .
| | - Ralph Krafczyk
- Department of Biology I, Microbiology , Ludwig Maximilians-Universität München , Munich , Germany.,Center for Integrated Protein Science Munich , Ludwig-Maximilians-Universität München , Munich , Germany .
| | - Jakub Macošek
- Structural and Computational Biology Unit , EMBL Heidelberg , Heidelberg 69117 , Germany
| | - Yu-Lei Li
- Department of Organic Chemistry , School of Pharmacy , Second Military Medical University , Shanghai 200433 , China . .,School of Pharmacy , Wei Fang Medical University , Shandong 261053 , China
| | - Yan Zou
- Department of Organic Chemistry , School of Pharmacy , Second Military Medical University , Shanghai 200433 , China .
| | - Bernd Simon
- Structural and Computational Biology Unit , EMBL Heidelberg , Heidelberg 69117 , Germany
| | - Xing Pan
- Institute of Infection and Immunity , Taihe Hospital , Hubei University of Medicine , Shiyan , Hubei 442000 , China
| | - Qiu-Ye Wu
- Department of Organic Chemistry , School of Pharmacy , Second Military Medical University , Shanghai 200433 , China .
| | - Fang Yan
- School of Pharmacy , Wei Fang Medical University , Shandong 261053 , China
| | - Shan Li
- Institute of Infection and Immunity , Taihe Hospital , Hubei University of Medicine , Shiyan , Hubei 442000 , China
| | - Janosch Hennig
- Structural and Computational Biology Unit , EMBL Heidelberg , Heidelberg 69117 , Germany
| | - Kirsten Jung
- Department of Biology I, Microbiology , Ludwig Maximilians-Universität München , Munich , Germany.,Center for Integrated Protein Science Munich , Ludwig-Maximilians-Universität München , Munich , Germany .
| | - Jürgen Lassak
- Department of Biology I, Microbiology , Ludwig Maximilians-Universität München , Munich , Germany.,Center for Integrated Protein Science Munich , Ludwig-Maximilians-Universität München , Munich , Germany .
| | - Hong-Gang Hu
- Department of Organic Chemistry , School of Pharmacy , Second Military Medical University , Shanghai 200433 , China .
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