1
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Guo Y, Yang X, Sun R, Hu X, Shu C, Yang X, Gao H, Wang X, Tan B. A Dual-Active Covalent Triazine Framework Film for Efficient Visible-Light-Driven Hydrogen Peroxide Production. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024:e2403743. [PMID: 38973074 DOI: 10.1002/smll.202403743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/27/2024] [Indexed: 07/09/2024]
Abstract
Photocatalytic hydrogen peroxide production from water and oxygen offers a clean and sustainable alternative to the conventional energy-intensive anthraquinone oxidation method. Compared to powdered covalent triazine frameworks (CTFs), the film morphology of CTFs provides better connectivity in 2D, yielding several advantages: more efficient connections between active sites, reduced electron-hole pair recombination, increased resistance to superoxide radical induced corrosion, and decreased light scattering. Leveraging these benefits, it has incorporated dual active sites for both the oxygen reduction reaction (ORR) and the water oxidation reaction (WOR) into a CTF film system. This dual-active CTF film demonstrated an exceptional hydrogen peroxide production rate of 19 460 µmol h⁻¹ m⁻2 after 1 h and 17 830 µmol h⁻¹ m⁻2 after 5 h under visible light irradiation (≥420 nm) without the need for sacrificial agents.
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Affiliation(s)
- Yantong Guo
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Xiaoju Yang
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Ruixue Sun
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Xunliang Hu
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Chang Shu
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Xuan Yang
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Hui Gao
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Xiaoyan Wang
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
| | - Bien Tan
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Luoyu Road No. 1037, Wuhan, 430074, P. R. China
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2
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Shillito GE, Preston D, Crowley JD, Wagner P, Harris SJ, Gordon KC, Kupfer S. Controlling Excited State Localization in Bichromophoric Photosensitizers via the Bridging Group. Inorg Chem 2024; 63:4947-4956. [PMID: 38437618 PMCID: PMC10951951 DOI: 10.1021/acs.inorgchem.3c04110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 01/18/2024] [Accepted: 01/30/2024] [Indexed: 03/06/2024]
Abstract
A series of photosensitizers comprised of both an inorganic and an organic chromophore are investigated in a joint synthetic, spectroscopic, and theoretical study. This bichromophoric design strategy provides a means by which to significantly increase the excited state lifetime by isolating the excited state away from the metal center following intersystem crossing. A variable bridging group is incorporated between the donor and acceptor units of the organic chromophore, and its influence on the excited state properties is explored. The Franck-Condon (FC) photophysics and subsequent excited state relaxation pathways are investigated with a suite of steady-state and time-resolved spectroscopic techniques in combination with scalar-relativistic quantum chemical calculations. It is demonstrated that the presence of an electronically conducting bridge that facilitates donor-acceptor communication is vital to generate long-lived (32 to 45 μs), charge-separated states with organic character. In contrast, when an insulating 1,2,3-triazole bridge is used, the excited state properties are dominated by the inorganic chromophore, with a notably shorter lifetime of 60 ns. This method of extending the lifetime of a molecular photosensitizer is, therefore, of interest for a range of molecular electronic devices and photophysical applications.
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Affiliation(s)
- Georgina E. Shillito
- Institute
of Physical Chemistry, Friedrich Schiller
University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Dan Preston
- Research
School of Chemistry, Australian National
University, Canberra, ACT 2600, Australia
| | - James D. Crowley
- Department
of Chemistry, University of Otago, 362 Leith Street, Dunedin 9016, New Zealand
- MacDiarmid
Institute for Advanced Materials and Nanotechnology, Wellington, 6012, New Zealand
| | - Pawel Wagner
- University
of Wollongong, Northfields Avenue, Wollongong, NSW 2522, Australia
| | - Samuel J. Harris
- Department
of Chemistry, University of Otago, 362 Leith Street, Dunedin 9016, New Zealand
- MacDiarmid
Institute for Advanced Materials and Nanotechnology, Wellington, 6012, New Zealand
| | - Keith C. Gordon
- Department
of Chemistry, University of Otago, 362 Leith Street, Dunedin 9016, New Zealand
- MacDiarmid
Institute for Advanced Materials and Nanotechnology, Wellington, 6012, New Zealand
| | - Stephan Kupfer
- Institute
of Physical Chemistry, Friedrich Schiller
University Jena, Helmholtzweg 4, 07743 Jena, Germany
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3
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Vasiļevska A, Slanina T. Structure-property-function relationships of stabilized and persistent C- and N-based triaryl radicals. Chem Commun (Camb) 2024; 60:252-264. [PMID: 38086625 DOI: 10.1039/d3cc05706b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2024]
Abstract
Structurally similar C- and N-based triaryl radicals are among the most commonly used structural motifs in stable, open-shell, organic molecules. The application of such species is associated with their stability, properties and structural design. This study summarizes the basic stabilization and persistence principles of C- and N-based triaryl radicals and highlights recent advances in design strategies of radicals tailored for specific applications.
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Affiliation(s)
- Anna Vasiļevska
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, 166 10 Prague 6, Czech Republic.
- Department of Organic Chemistry, Charles University, 128 00 Prague 2, Czech Republic
| | - Tomáš Slanina
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, 166 10 Prague 6, Czech Republic.
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4
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Houthuijs KJ, Berden G, Engelke UFH, Gautam V, Wishart DS, Wevers RA, Martens J, Oomens J. An In Silico Infrared Spectral Library of Molecular Ions for Metabolite Identification. Anal Chem 2023. [PMID: 37262385 DOI: 10.1021/acs.analchem.3c01078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Infrared ion spectroscopy (IRIS) continues to see increasing use as an analytical tool for small-molecule identification in conjunction with mass spectrometry (MS). The IR spectrum of an m/z selected population of ions constitutes a unique fingerprint that is specific to the molecular structure. However, direct translation of an IR spectrum to a molecular structure remains challenging, as reference libraries of IR spectra of molecular ions largely do not exist. Quantum-chemically computed spectra can reliably be used as reference, but the challenge of selecting the candidate structures remains. Here, we introduce an in silico library of vibrational spectra of common MS adducts of over 4500 compounds found in the human metabolome database. In total, the library currently contains more than 75,000 spectra computed at the DFT level that can be queried with an experimental IR spectrum. Moreover, we introduce a database of 189 experimental IRIS spectra, which is employed to validate the automated spectral matching routines. This demonstrates that 75% of the metabolites in the experimental data set are correctly identified, based solely on their exact m/z and IRIS spectrum. Additionally, we demonstrate an approach for specifically identifying substructures by performing a search without m/z constraints to find structural analogues. Such an unsupervised search paves the way toward the de novo identification of unknowns that are absent in spectral libraries. We apply the in silico spectral library to identify an unknown in a plasma sample as 3-hydroxyhexanoic acid, highlighting the potential of the method.
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Affiliation(s)
- Kas J Houthuijs
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Nijmegen 6525 ED, The Netherlands
| | - Giel Berden
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Nijmegen 6525 ED, The Netherlands
| | - Udo F H Engelke
- Department of Genetics, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands
| | - Vasuk Gautam
- Department of Biological Sciences, University of Alberta, Edmonton AB T6G 2E9, Canada
| | - David S Wishart
- Department of Biological Sciences, University of Alberta, Edmonton AB T6G 2E9, Canada
- Department of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada
- Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, AB T6G 2B7, Canada
- Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, AB T6G 2H7, Canada
| | - Ron A Wevers
- Department of Genetics, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands
| | - Jonathan Martens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Nijmegen 6525 ED, The Netherlands
| | - Jos Oomens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Nijmegen 6525 ED, The Netherlands
- van 't Hoff Institute for Molecular Sciences, University of Amsterdam, Amsterdam 1098 XH, The Netherlands
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5
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Stevenson BC, Berden G, Martens J, Oomens J, Armentrout PB. Spectroscopic Investigation of the Metal Coordination of the Aromatic Amino Acids with Zinc and Cadmium. J Phys Chem A 2023; 127:3560-3569. [PMID: 37053556 DOI: 10.1021/acs.jpca.2c08940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
The aromatic amino acids (AAA), phenylalanine (Phe), tyrosine (Tyr), and tryptophan (Trp), were cationized with ZnCl+ and CdCl+, and the complexes were evaluated using infrared multiple photon dissociation (IRMPD) action spectroscopy. Specifically, the ZnCl+(Phe), CdCl+(Phe), ZnCl+(Tyr), CdCl+(Tyr), and ZnCl+(Trp) species were examined because the CdCl+(Trp) IRMPD spectrum is available in the literature. Several low-energy conformers for all complexes were found using quantum chemical calculations, and their simulated vibrational spectra were compared to the experimental IRMPD spectra to identify dominant isomers formed. In the case of MCl+(Phe) and MCl+(Tyr), these comparisons indicated the dominant binding motif is a tridentate structure, where the metal atom coordinates with the backbone amino nitrogen and carbonyl oxygen, as well as the aryl ring. These observations are consistent with the predicted ground states at the B3LYP, B3P86, B3LYP-GD3BJ, and MP2 levels of theory. For the ZnCl+(Trp) system, the experimental spectrum indicates a similar binding motif, with the zinc atom coordinating with the backbone nitrogen and carbonyl oxygen and either the pyrrole ring or the benzene ring of the indole side chain. These observations are consistent with the predicted low-lying conformers identified by the aforementioned levels of theory, with the B3LYP and B3P86 levels predicting the metal-pyrrole ring interaction is more favorable than the metal-benzene ring interactions and the opposite at the B3LYP-GD3BJ and MP2 levels.
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Affiliation(s)
- Brandon C Stevenson
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
| | - Giel Berden
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jonathan Martens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
- van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, NL-1098 XH Amsterdam, The Netherlands
| | - P B Armentrout
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
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6
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Yuan R, Wei Y, Musikavanhu B, Tang M, Xue Z, Wang A, Zhang J, Qiu X, Zhao L. Asymmetric cobalt porphyrins for oxygen reduction reactions: Boosted catalytic activity by the use of triphenylamine. MOLECULAR CATALYSIS 2023. [DOI: 10.1016/j.mcat.2022.112805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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7
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Castillo-Pazos DJ, Lasso JD, Hamzehpoor E, Ramos-Sánchez J, Salgado JM, Cosa G, Perepichka DF, Li CJ. Triarylamines as catalytic donors in light-mediated electron donor–acceptor complexes. Chem Sci 2023; 14:3470-3481. [PMID: 37006691 PMCID: PMC10055340 DOI: 10.1039/d2sc07078b] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Accepted: 02/12/2023] [Indexed: 03/16/2023] Open
Abstract
EDA complexes with catalytic triarylamines allow C–H perfluoroalkylation of arenes and heteroarenes under visible light irradiation in pH- and redox-neutral conditions. A detailed photophysical characterization of the EDA complex is provided.
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Affiliation(s)
- Durbis J. Castillo-Pazos
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
- FRQNT Centre for Green Chemistry and Catalysis, McGill University, Montreal, QC H3A 0B8, Canada
| | - Juan D. Lasso
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
- FRQNT Centre for Green Chemistry and Catalysis, McGill University, Montreal, QC H3A 0B8, Canada
| | - Ehsan Hamzehpoor
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
| | - Jorge Ramos-Sánchez
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
| | - Jan Michael Salgado
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
- FRQNT Centre for Green Chemistry and Catalysis, McGill University, Montreal, QC H3A 0B8, Canada
| | - Gonzalo Cosa
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
- FRQNT Centre for Green Chemistry and Catalysis, McGill University, Montreal, QC H3A 0B8, Canada
| | - Dmytro F. Perepichka
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
| | - Chao-Jun Li
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A 0B8, Canada
- FRQNT Centre for Green Chemistry and Catalysis, McGill University, Montreal, QC H3A 0B8, Canada
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8
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Wei Y, Chen Y, Yuan R, Xue Z, Zhao L. Substitution effects of zinc porphyrin-sensitized TiO2 nanoparticles for photodegradation of AB1. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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9
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Chua MH, Chin KLO, Ang SJ, Soo XYD, Png ZM, Zhu Q, Xu J. Aggregation Induced Emission‐active Poly(acrylates) for Electrofluorochromic Detection of Nitroaromatic Compounds. CHEMPHOTOCHEM 2022. [DOI: 10.1002/cptc.202200168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Ming Hui Chua
- Institute of Sustainability for Chemicals Energy and Environment Sustainable Polymers 1 Pesek Road, Jurong Island 627833 Singapore SINGAPORE
| | - Kang Le Osmund Chin
- Institute of Sustainability for Chemicals Energy and Environment Sustainable Polymers 1 Pesek Road, Jurong Island 627833 SINGAPORE
| | - Shi Jun Ang
- Institute of High Performance Computing Materials Science and Chemistry 1 Fusionopolis Way, Connexis, #16-16 138632 SINGAPORE
| | - Xiang Yun Debbie Soo
- Institute of Materials Research and Engineering Advanced Characterization & Instrumentation 2 Fusionopolis Way, Innovis, #08-03 138634 SINGAPORE
| | - Zhuang Mao Png
- Institute of Sustainability for Chemicals Energy and Environment Sustainable Polymers 1 Pesek Road, Jurong Island 627833 SINGAPORE
| | - Qiang Zhu
- Institute of Materials Research and Engineering Advanced Characterization & Instrumentation 2 Fusionopolis Way, Innovis, #08-03 138634 SINGAPORE
| | - Jianwei Xu
- Institute of Sustainability for Chemicals Energy and Environment Sustainable Polymers 1 Pesek Road, Jurong Island 627833 SINGAPORE
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10
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Fujita H, Sasamoto O, Kobayashi S, Kitamura M, Kunishima M. Synthesis and characterization of tetraphenylammonium salts. Nat Commun 2022; 13:2537. [PMID: 35534487 PMCID: PMC9085870 DOI: 10.1038/s41467-022-30282-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Accepted: 04/20/2022] [Indexed: 11/15/2022] Open
Abstract
The phenyl (Ph) group is a representative substituent in the field of organic chemistry as benzene (the parent molecule) is of fundamental importance. Simple Ph-substituted compounds of common chemical elements are well known. However, extensive structural characterization of tetraphenylammonium (Ph4N+) salts has not been reported. Herein, the synthesis of Ph4N+ salts and their characterization data including the 1H and 13C nuclear magnetic resonance (NMR) spectra and the single-crystal X-ray structure have been presented. An intermolecular radical coupling reaction between an aryl radical and a triarylammoniumyl radical cation was conducted to synthesize the target moieties. The Ph4N+ salts described herein are the simplest tetraarylammonium (Ar4N+) salts known. The results reported herein can potentially help access the otherwise inaccessible non-bridged Ar4N+ salts, a new class of rigid and sterically hindered organic cations. Tetraphenylammonium (Ph4N+) salts remain synthetically inaccessible despite their simple chemical structure. Here, the authors have synthesized Ph4N+ salts and provided characterization including a single-crystal X-ray structure.
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11
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Xu Q, Zhao L, Yuan R, Chen Y, Xue Z, Zhang J, Qiu X, Qu J. Interfacial charge transfer mechanism of oxygen reduction reaction in alkali media: Effects of molecular charge states and triphenylamine substituent on cobalt porphyrin electrocatalysts. Colloids Surf A Physicochem Eng Asp 2021. [DOI: 10.1016/j.colsurfa.2021.127435] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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12
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Buguis FL, Maar RR, Staroverov VN, Gilroy JB. Near‐Infrared Boron Difluoride Formazanate Dyes. Chemistry 2021; 27:2854-2860. [DOI: 10.1002/chem.202004793] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2020] [Indexed: 01/26/2023]
Affiliation(s)
- Francis L. Buguis
- Department of Chemistry and The Centre for Advanced Materials and Biomaterials Research (CAMBR) The University of Western Ontario 1151 Richmond Street North London Ontario N6A 5B7 Canada
| | - Ryan R. Maar
- Department of Chemistry and The Centre for Advanced Materials and Biomaterials Research (CAMBR) The University of Western Ontario 1151 Richmond Street North London Ontario N6A 5B7 Canada
| | - Viktor N. Staroverov
- Department of Chemistry and The Centre for Advanced Materials and Biomaterials Research (CAMBR) The University of Western Ontario 1151 Richmond Street North London Ontario N6A 5B7 Canada
| | - Joe B. Gilroy
- Department of Chemistry and The Centre for Advanced Materials and Biomaterials Research (CAMBR) The University of Western Ontario 1151 Richmond Street North London Ontario N6A 5B7 Canada
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13
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Lermyte F, Theisen A, O'Connor PB. Solution Condition-Dependent Formation of Gas-Phase Protomers of Alpha-Synuclein in Electrospray Ionization. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2021; 32:364-372. [PMID: 33237779 DOI: 10.1021/jasms.0c00373] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
One of the main characteristics of biomolecular ions in mass spectrometry is their net charge, and a range of approaches exist to either increase or decrease this quantity in the gas phase. In the context of small molecules, it is well known that, in addition to the charge state, the charge site also has a profound effect on an ion's gas-phase behavior; however, this effect has been far less explored for peptides and intact proteins. Methods exist to determine charge sites of protein ions, and others have observed that the interplay of electrostatic repulsion and inherent basicity leads to different sites gaining or losing a charge depending on the total net charge. Here, we report two distinct protonation site isomers ("protomers") of α-synuclein occurring at the same charge state. The protomers showed important differences in their gas-phase fragmentation behavior and were furthermore distinguishable by ion mobility spectrometry. One protomer was produced under standard electrospray conditions, while the other was observed after addition of 10% dimethyl sulfoxide to the protein solution. Charge sites for both protomers were determined using ultraviolet photodissociation.
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Affiliation(s)
- Frederik Lermyte
- Department of Chemistry, Technical University of Darmstadt, 64287 Darmstadt, Germany
- School of Engineering, University of Warwick, Coventry CV4 7AL, U.K
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, U.K
| | - Alina Theisen
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, U.K
| | - Peter B O'Connor
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, U.K
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14
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Lengyel J, Levin N, Wensink FJ, Lushchikova OV, Barnett RN, Landman U, Heiz U, Bakker JM, Tschurl M. Carbide Dihydrides: Carbonaceous Species Identified in Ta 4 + -Mediated Methane Dehydrogenation. Angew Chem Int Ed Engl 2020; 59:23631-23635. [PMID: 32966698 PMCID: PMC7814672 DOI: 10.1002/anie.202010794] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 09/10/2020] [Indexed: 12/02/2022]
Abstract
The products of methane dehydrogenation by gas‐phase Ta4+ clusters are structurally characterized using infrared multiple photon dissociation (IRMPD) spectroscopy in conjunction with quantum chemical calculations. The obtained spectra of [4Ta,C,2H]+ reveal a dominance of vibrational bands of a H2Ta4C+ carbide dihydride structure over those indicative for a HTa4CH+ carbyne hydride one, as is unambiguously verified by studies employing various methane isotopologues. Because methane dehydrogenation by metal cations M+ typically leads to the formation of either MCH2+ carbene or HMCH+ carbyne hydride structures, the observation of a H2MC+ carbide dihydride structure implies that it is imperative to consider this often‐neglected class of carbonaceous intermediates in the reaction of metals with hydrocarbons.
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Affiliation(s)
- Jozef Lengyel
- Lehrstuhl für Physikalische Chemie, Technische Universität München, Lichtenbergstraße 4, 85748, Garching, Germany
| | - Nikita Levin
- Lehrstuhl für Physikalische Chemie, Technische Universität München, Lichtenbergstraße 4, 85748, Garching, Germany
| | - Frank J Wensink
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525, ED, Nijmegen, The Netherlands
| | - Olga V Lushchikova
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525, ED, Nijmegen, The Netherlands
| | - Robert N Barnett
- School of Physics, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Uzi Landman
- School of Physics, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Ueli Heiz
- Lehrstuhl für Physikalische Chemie, Technische Universität München, Lichtenbergstraße 4, 85748, Garching, Germany
| | - Joost M Bakker
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525, ED, Nijmegen, The Netherlands
| | - Martin Tschurl
- Lehrstuhl für Physikalische Chemie, Technische Universität München, Lichtenbergstraße 4, 85748, Garching, Germany
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15
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Lengyel J, Levin N, Wensink FJ, Lushchikova OV, Barnett RN, Landman U, Heiz U, Bakker JM, Tschurl M. Carbid‐Dihydride: kohlenstoffhaltige Spezies identifiziert in der Ta
4
+
‐vermittelten Methandehydrierung. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202010794] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jozef Lengyel
- Lehrstuhl für Physikalische Chemie Technische Universität München Lichtenbergstraße 4 85748 Garching Deutschland
| | - Nikita Levin
- Lehrstuhl für Physikalische Chemie Technische Universität München Lichtenbergstraße 4 85748 Garching Deutschland
| | - Frank J. Wensink
- Radboud University Institute for Molecules and Materials FELIX Laboratory Toernooiveld 7 6525 ED Nijmegen Niederlande
| | - Olga V. Lushchikova
- Radboud University Institute for Molecules and Materials FELIX Laboratory Toernooiveld 7 6525 ED Nijmegen Niederlande
| | - Robert N. Barnett
- School of Physics Georgia Institute of Technology Atlanta GA 30332 USA
| | - Uzi Landman
- School of Physics Georgia Institute of Technology Atlanta GA 30332 USA
| | - Ueli Heiz
- Lehrstuhl für Physikalische Chemie Technische Universität München Lichtenbergstraße 4 85748 Garching Deutschland
| | - Joost M. Bakker
- Radboud University Institute for Molecules and Materials FELIX Laboratory Toernooiveld 7 6525 ED Nijmegen Niederlande
| | - Martin Tschurl
- Lehrstuhl für Physikalische Chemie Technische Universität München Lichtenbergstraße 4 85748 Garching Deutschland
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16
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Acharya B, Kaushalya WKDN, Martens J, Berden G, Oomens J, Patrick AL. A Combined Infrared Ion Spectroscopy and Computational Chemistry Study of Hydroxyproline Isomers. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2020; 31:1205-1211. [PMID: 32383378 DOI: 10.1021/jasms.0c00061] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Hydroxyproline is a common variation of proline, with diverse biological roles. The hydroxylation of proline gives rise to several (natural and/or synthetic) isomeric forms, including both positional isomers and stereoisomers. While mass spectrometry is widely touted as a very selective analytical technique, the identification of closely related isomers often poses a challenge. In these cases, allied technologies become helpful in providing full characterization. Here, infrared multiple photon dissociation (IRMPD) spectroscopy is used to differentiate between three isomers, namely cis-3-hydroxyproline, cis-4-hydroxyproline, and trans-4-hydroxyproline. In contrast to the protonated species which show only minor variations in their IRMPD spectra, lithiated species were found to display significant spectral differences, making their differentiation more straightforward. The conformational origin of these spectral differences was investigated by complementary quantum-chemical calculations.
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Affiliation(s)
- Baku Acharya
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, United States
| | - W K D N Kaushalya
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, United States
| | - Jonathan Martens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
| | - Giel Berden
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
| | - Amanda L Patrick
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, United States
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17
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Kranenburg RF, van Geenen FAMG, Berden G, Oomens J, Martens J, van Asten AC. Mass-Spectrometry-Based Identification of Synthetic Drug Isomers Using Infrared Ion Spectroscopy. Anal Chem 2020; 92:7282-7288. [PMID: 32286052 PMCID: PMC7240807 DOI: 10.1021/acs.analchem.0c00915] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Accepted: 04/14/2020] [Indexed: 12/13/2022]
Abstract
Infrared ion spectroscopy (IRIS), a mass-spectrometry-based technique exploiting resonant infrared multiple photon dissociation (IRMPD), has been applied for the identification of novel psychoactive substances (NPS). Identification of the precise isomeric forms of NPS is of significant forensic relevance since legal controls are dependent on even minor molecular differences such as a single ring-substituent position. Using three isomers of fluoroamphetamine and two ring-isomers of both MDA and MDMA, we demonstrate the ability of IRIS to distinguish closely related NPS. Computationally predicted infrared (IR) spectra are shown to correspond with experimental spectra and could explain the molecular origins of their distinctive IR absorption bands. IRIS was then used to investigate a confiscated street sample containing two unknown substances. One substance could easily be identified by comparison to the IR spectra of reference standards. For the other substance, however, this approach proved inconclusive due to incomplete mass spectral databases as well as a lack of available reference compounds, two common analytical limitations resulting from the rapid development of NPS. Most excitingly, the second unknown substance could nevertheless be identified by using computationally predicted IR spectra of several potential candidate structures instead of their experimental reference spectra.
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Affiliation(s)
- Ruben F. Kranenburg
- Unit
Amsterdam, Forensic Laboratory, Dutch National
Police, Kabelweg 25, Amsterdam 1014 BA, The Netherlands
- Van’t
Hoff Institute for Molecular Sciences, University
of Amsterdam, P.O. Box 94157, Amsterdam 1090 GD, The
Netherlands
| | - Fred A. M. G. van Geenen
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Giel Berden
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Jos Oomens
- Van’t
Hoff Institute for Molecular Sciences, University
of Amsterdam, P.O. Box 94157, Amsterdam 1090 GD, The
Netherlands
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Jonathan Martens
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Arian C. van Asten
- Van’t
Hoff Institute for Molecular Sciences, University
of Amsterdam, P.O. Box 94157, Amsterdam 1090 GD, The
Netherlands
- Co
van Ledden Hulsebosch Center (CLHC), Amsterdam Center for Forensic
Science and Medicine, P.O. Box 94157, Amsterdam 1090 GD, The
Netherlands
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18
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Munshi MU, Martens J, Berden G, Oomens J. Vibrational Spectra of the Ruthenium-Tris-Bipyridine Dication and Its Reduced Form in Vacuo. J Phys Chem A 2020; 124:2449-2459. [PMID: 32119552 PMCID: PMC7104246 DOI: 10.1021/acs.jpca.0c00888] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
Experimental IR spectra
in the 500–1850 cm–1 fingerprint frequency
range are presented for the isolated, gaseous
redox pair ions [Ru(bpy)3]2+, and [Ru(bpy)3]+, where bpy = 2,2′-bipyridine. Spectra
are obtained using the FELIX free-electron laser and a quadrupole
ion trap mass spectrometer. The 2+ complex is generated by electrospray
ionization and the charge-reduced radical cation is produced by gas-phase
one-electron reduction in an ion–ion reaction with the fluoranthene
radical anion. Experimental spectra are compared against computed
spectra predicted by density functional theory (DFT) using different
levels of theory. For the closed-shell [Ru(bpy)3]2+ ion, the match between experimental and computed IR spectra is very
good; however, this is not the case for the charge-reduced [Ru(bpy)3]+ ion, which demands additional theoretical investigation.
When using the hybrid B3LYP functional, we observe that better agreement
with experiment is obtained upon reduction of the Hartree–Fock
exact-exchange contribution from 20% to about 14%. Additionally, calculations
using the M06 functional appear to be promising in terms of the prediction
of IR spectra; however, it is unclear if the correct electronic structure
is obtained. The M06 and B3LYP functionals indicate that the added
electron in [Ru(bpy)3]+ is delocalized over
the three bpy ligands, while the long-range corrected LC-BLYP and
the CAM-B3LYP functionals show it to be more localized on a single
bpy ligand. Although these latter levels of theory fail to reproduce
the experimentally observed IR frequencies, one may argue that the
unusually large bandwidths observed in the spectrum are due to the
fluxional character of a complex with the added electron not symmetrically
distributed over the ligands. The experimental IR spectra presented
here can serve as benchmark for further theoretical investigations.
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Affiliation(s)
- Musleh Uddin Munshi
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jonathan Martens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Giel Berden
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands.,University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands
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19
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Fonkem C, Ejuh GW, Tchangnwa Nya F, Yossa Kamsi RA, Ndjaka JMB. Theoretical study of optoelectronic properties of the molecule 2-cyano-3-[4-(diphenylamino)phenyl] acrylic acid. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2020. [DOI: 10.1007/s13738-019-01790-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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20
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Martens J, van Outersterp RE, Vreeken RJ, Cuyckens F, Coene KLM, Engelke UF, Kluijtmans LAJ, Wevers RA, Buydens LMC, Redlich B, Berden G, Oomens J. Infrared ion spectroscopy: New opportunities for small-molecule identification in mass spectrometry - A tutorial perspective. Anal Chim Acta 2019; 1093:1-15. [PMID: 31735202 DOI: 10.1016/j.aca.2019.10.043] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Revised: 10/19/2019] [Accepted: 10/21/2019] [Indexed: 01/21/2023]
Abstract
Combining the individual analytical strengths of mass spectrometry and infrared spectroscopy, infrared ion spectroscopy is increasingly recognized as a powerful tool for small-molecule identification in a wide range of analytical applications. Mass spectrometry is itself a leading analytical technique for small-molecule identification on the merit of its outstanding sensitivity, selectivity and versatility. The foremost shortcoming of the technique, however, is its limited ability to directly probe molecular structure, especially when contrasted against spectroscopic techniques. In infrared ion spectroscopy, infrared vibrational spectra are recorded for mass-isolated ions and provide a signature that can be matched to reference spectra, either measured from standards or predicted using quantum-chemical calculations. Here we present an overview of the potential for this technique to develop into a versatile analytical method for identifying molecular structures in mass spectrometry-based analytical workflows. In this tutorial perspective, we introduce the reader to the technique of infrared ion spectroscopy and highlight a selection of recent experimental advances and applications in current analytical challenges, in particular in the field of untargeted metabolomics. We report on the coupling of infrared ion spectroscopy with liquid chromatography and present experiments that serve as proof-of-principle examples of strategies to address outstanding challenges.
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Affiliation(s)
- Jonathan Martens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands.
| | - Rianne E van Outersterp
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands
| | - Rob J Vreeken
- Drug Metabolism & Pharmacokinetics, Janssen R&D, Beerse, Belgium
| | - Filip Cuyckens
- Drug Metabolism & Pharmacokinetics, Janssen R&D, Beerse, Belgium
| | - Karlien L M Coene
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Udo F Engelke
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Leo A J Kluijtmans
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Ron A Wevers
- Department of Laboratory Medicine, Translational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, the Netherlands
| | - Lutgarde M C Buydens
- Radboud University, Institute for Molecules and Materials, Chemometrics, Heyendaalseweg 135, 6525AJ, Nijmegen, the Netherlands
| | - Britta Redlich
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands
| | - Giel Berden
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED, Nijmegen, the Netherlands; van't Hoff Institute for Molecular Sciences, University of Amsterdam, 1098XH, Amsterdam, Science Park 908, the Netherlands.
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21
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Munshi MU, Martens J, Berden G, Oomens J. Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2'-Bipyridine Redox Pairs. J Phys Chem A 2019; 123:4149-4157. [PMID: 31021091 PMCID: PMC6526468 DOI: 10.1021/acs.jpca.9b00793] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
![]()
We report the fingerprint
IR spectra of mass-isolated gaseous coordination
complexes of 2,2′-bipyridine (bpy) and 1,4,8,11-tetra-azacyclotetradecane
(cyclam) with a copper ion in its I and II oxidation states. Experiments
are carried out in a quadrupole ion trap (QIT) mass spectrometer coupled
to the FELIX infrared free-electron laser. Dications are prepared
using electrospray ionization (ESI), while monocations are generated
by charge reduction of the dication using electron transfer-reduction
(ETR) in the QIT. Interestingly, [Cu(bpy)2]+ can also be generated directly using ESI, so that its geometries
as produced from ETR and ESI can be compared. The effects of charge
reduction on the IR spectra are investigated by comparing the experimental
spectra with the IR spectra modeled by density functional theory.
Reduction of Cu(II) to the closed-shell Cu(I) ion retains the square-planar
geometry of the Cu–cyclam complex. In contrast, for the bis–bpy
complex with Cu, charge reduction induces a conversion from a near-square-planar
to a tetrahedral geometry. The geometry of [Cu(bpy)2]+ is identical to that of the complex generated directly from
ESI as a native structure, which indicates that the ETR product ion
thermalizes. For [Cu(cyclam)]+, however, the square-planar
geometry of the 2+ complex is retained upon charge reduction, although
a (distorted) tetrahedral geometry was predicted to be lower in energy.
These differences are attributed to different barriers to rearrangement.
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Affiliation(s)
- Musleh Uddin Munshi
- Radboud University , Institute for Molecules and Materials, FELIX Laboratory , Toernooiveld 7 , 6525 ED Nijmegen , The Netherlands
| | - Jonathan Martens
- Radboud University , Institute for Molecules and Materials, FELIX Laboratory , Toernooiveld 7 , 6525 ED Nijmegen , The Netherlands
| | - Giel Berden
- Radboud University , Institute for Molecules and Materials, FELIX Laboratory , Toernooiveld 7 , 6525 ED Nijmegen , The Netherlands
| | - Jos Oomens
- Radboud University , Institute for Molecules and Materials, FELIX Laboratory , Toernooiveld 7 , 6525 ED Nijmegen , The Netherlands.,University of Amsterdam , Science Park 904 , 1098 XH Amsterdam , The Netherlands
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22
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Blanchard P, Malacrida C, Cabanetos C, Roncali J, Ludwigs S. Triphenylamine and some of its derivatives as versatile building blocks for organic electronic applications. POLYM INT 2018. [DOI: 10.1002/pi.5695] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Philippe Blanchard
- Group Linear Conjugated Systems, MOLTECH‐Anjou, CNRS UMR 6200University of Angers Angers France
| | - Claudia Malacrida
- IPOC – Functional Polymers, Institute of Polymer Chemistry, University of Stuttgart Stuttgart Germany
| | - Clément Cabanetos
- Group Linear Conjugated Systems, MOLTECH‐Anjou, CNRS UMR 6200University of Angers Angers France
| | - Jean Roncali
- Group Linear Conjugated Systems, MOLTECH‐Anjou, CNRS UMR 6200University of Angers Angers France
| | - Sabine Ludwigs
- IPOC – Functional Polymers, Institute of Polymer Chemistry, University of Stuttgart Stuttgart Germany
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23
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Pont I, González-García J, Inclán M, Reynolds M, Delgado-Pinar E, Albelda MT, Vilar R, García-España E. Aza-Macrocyclic Triphenylamine Ligands for G-Quadruplex Recognition. Chemistry 2018; 24:10850-10858. [DOI: 10.1002/chem.201802077] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Revised: 05/14/2018] [Indexed: 12/15/2022]
Affiliation(s)
- Isabel Pont
- Department of Inorganic Chemistry, Institute of Molecular Science; University of Valencia; Catedrático José Beltran 2 46980 Paterna Spain
- Department of Chemistry; Imperial College London; London SW7 2AZ UK
| | - Jorge González-García
- Department of Inorganic Chemistry, Institute of Molecular Science; University of Valencia; Catedrático José Beltran 2 46980 Paterna Spain
- Department of Chemistry; Imperial College London; London SW7 2AZ UK
| | - Mario Inclán
- Department of Inorganic Chemistry, Institute of Molecular Science; University of Valencia; Catedrático José Beltran 2 46980 Paterna Spain
| | - Matthew Reynolds
- Department of Chemistry; Imperial College London; London SW7 2AZ UK
| | - Estefanía Delgado-Pinar
- Department of Inorganic Chemistry, Institute of Molecular Science; University of Valencia; Catedrático José Beltran 2 46980 Paterna Spain
| | - M. Teresa Albelda
- Department of Inorganic Chemistry, Institute of Molecular Science; University of Valencia; Catedrático José Beltran 2 46980 Paterna Spain
- GIBI2030, Grupo de Investigación Biomédica en Imagen, IIS La Fe; Valencia Spain
| | - Ramon Vilar
- Department of Chemistry; Imperial College London; London SW7 2AZ UK
| | - Enrique García-España
- Department of Inorganic Chemistry, Institute of Molecular Science; University of Valencia; Catedrático José Beltran 2 46980 Paterna Spain
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24
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Dunbar RC, Martens J, Berden G, Oomens J. Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase? J Phys Chem A 2018; 122:5589-5596. [PMID: 29847124 PMCID: PMC6026845 DOI: 10.1021/acs.jpca.8b02926] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
![]()
Chelation complexes
of the histidine-containing tripeptides HisAlaAla,
AlaHisAla, and AlaAlaHis with Ni(II) and Cu(II) having a −1
net charge are characterized in the gas phase by infrared multiple-photon
dissociation (IRMPD) spectroscopy and density functional theory calculations.
We address the question of whether the gas-phase complexes carry over
characteristics from the corresponding condensed-phase species. We
focus particularly on three aspects of their structure: (i) square-planar
chelation by the deprotonated amide nitrogens around the metal ion
(low-spin for the Ni case), (ii) metal-ion coordination of the imidazole
side chain nitrogen, and (iii) the exceptional preference for metal-ion
chelation by peptides with His in the third position from the N-terminus,
as in the amino terminal Cu and Ni (ATCUN) motif. We find that square-planar
binding around the metal ion, involving bonds to both deprotonated
backbone nitrogens, one of the carboxylate oxygens and the N-terminal
nitrogen, is the dominant binding motif for all three isomers. In
contrast to the condensed-phase behavior, the dominant mode of binding
for all three isomers does not involve the imidazole side chain, which
is instead placed outside the coordination zone. Only for the AlaAlaHis
isomer, the imidazole-bound structure is also detected as a minority
population, as identified from a distinctive short-wavelength IR absorption.
The observation that this conformation exists only for AlaAlaHis correlates
with condensed-phase behavior at neutral-to-basic pH, in the sense
that the isomer with His in the third position is exceptionally disposed
to metal ion chelation by four nitrogen atoms (4N) when compared with
the other isomers. These results also emphasize the divergence between
the conformational stabilities in the gas phase and in solution or
crystalline environments: in the gas phase, direct metal binding of
the imidazole is overall less favorable than the alternative of a
remote imidazole that can act as an intramolecular H-bond donor enhancing
the gas-phase stability.
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Affiliation(s)
- Robert C Dunbar
- Chemistry Department , Case Western Reserve University , Cleveland , Ohio 44106 , United States
| | - Jonathan Martens
- Radboud University, Institute for Molecules and Materials , FELIX Laboratory , Toernooiveld 7c , 6525ED Nijmegen , The Netherlands
| | - Giel Berden
- Radboud University, Institute for Molecules and Materials , FELIX Laboratory , Toernooiveld 7c , 6525ED Nijmegen , The Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and Materials , FELIX Laboratory , Toernooiveld 7c , 6525ED Nijmegen , The Netherlands.,University of Amsterdam , Science Park 904 , 1098XH Amsterdam , The Netherlands
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