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Computational Analysis of Hydrogen Bond Vibrations of Ice III in the Far-Infrared Band. CRYSTALS 2022. [DOI: 10.3390/cryst12070910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The hydrogen-disordered structure of ice III makes it difficult to analyze its vibrational spectrum theoretically. To clarify the contribution of hydrogen bonds (HBs), we constructed a 24-molecule supercell to mimic the real structure and performed first-principles density functional theory calculations. The calculated curve of phonon density of states showed good correspondence with the experimental data. Based on the theory of two kinds of HB vibrational modes, we analyzed the distributions of two-bond modes and four-bond modes. The energy splitting of these modes results in a flat vibrational band, which is a common phenomenon in high-pressure ice phases. These findings verified the general rule that there are two types of HB vibrations in ice, thereby furthering our understanding of HB interactions in water ice and their broad role in nature.
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Yuan XQ, Yu XH, Zhu XL, Wang XC, Liu XY, Cao JW, Qin XL, Zhang P. Comparative Analysis of the Hydrogen Bond Vibrations of Ice XII. ACS OMEGA 2022; 7:2970-2974. [PMID: 35097289 PMCID: PMC8792919 DOI: 10.1021/acsomega.1c06000] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 12/29/2021] [Indexed: 06/14/2023]
Abstract
It is difficult to theoretically study the vibrational spectrum of hydrogen-disordered ice XII compared with its hydrogen-ordered counterpart, ice XIV. We constructed a 24-molecule supercell of ice XII to mimic its real structure. We focused on hydrogen bond (HB) vibrational modes in the translation band using first-principles density functional theory (DFT). Our simulated results were in good agreement with inelastic neutron scattering experiments. We found that the optical vibrational modes of HBs are composed of three main components. These are cluster vibrations in the lowest-frequency region, four-bond HB vibrations in the highest-frequency region, and two-bond modes in between. Although the experimentally recorded curve of ice XII is smooth in the translation region, our results support the proposal that two types of intrinsic HB vibrational modes are common in the ice family.
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Wang XC, Zhu XL, Gu Y, Wang HC, Qin XL, Cao JW, Yu XH, Yuan XQ, Zhang P. Comparative Analysis of Hydrogen-Bonding Vibrations of Ice VI. ACS OMEGA 2021; 6:14442-14446. [PMID: 34124466 PMCID: PMC8190920 DOI: 10.1021/acsomega.1c01315] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 05/13/2021] [Indexed: 06/12/2023]
Abstract
It is difficult to investigate the hydrogen-bonding dynamics of hydrogen-disordered ice VI. Here, we present a comparative method based on our previous study of its counterpart hydrogen-ordered phase, ice XV. The primitive cell of ice XV is a 10 molecule unit, and the vibrational normal modes were analyzed individually. We constructed an 80 molecule supercell of ice VI to mimic the periodic unit and performed first-principles density functional theory calculations. As the two vibrational spectra show almost identical features, we compared the molecular translation vibrations. Inspired by the phonon analysis of ice XV, we found that the vibrational modes in the translation band of ice VI are classifiable into three groups. The lowest-strength vibration modes represent vibrations between two sublattices that lack hydrogen bonding. The highest-strength vibration modes represent the vibration of four hydrogen bonds of one molecule. The middle-strength vibration modes mainly represent the molecular vibrations of only two hydrogen bonds. Although there are many overlapping stronger and middle modes, there are only two main peaks in the inelastic neutron scattering (INS) spectra. This work explains the origin of the two main peaks in the far-infrared region of ice VI and illustrates how to analyze a hydrogen-disordered ice structure.
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Zhao ZJ, Qin XL, Cao JW, Zhu XL, Yang YC, Wang HC, Zhang P. Computing Investigations of Molecular and Atomic Vibrations of Ice IX. ACS OMEGA 2019; 4:18936-18941. [PMID: 31737855 PMCID: PMC6854819 DOI: 10.1021/acsomega.9b03190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2019] [Accepted: 10/16/2019] [Indexed: 05/15/2023]
Abstract
The normal modes of ice IX were investigated using the CASTEP code package, which is based on density functional theory. We found that the translational modes could be divided into three categories: four-bond vibrations, which possessed the highest energy; two-bond vibrations, which possessed the medium energy; and cluster vibrations with the lowest energy. The former two categories represent monomers vibrating against neighbors and present as two distinct peaks in many ice phases recorded in inelastic neutron-scattering experiments. It is typically difficult to assign the molecular vibration peaks in the far infrared region. The method we developed to analyze the normal modes, especially in the translation band of ice IX, provided physical insights into the vibrational spectrum of ice.
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Affiliation(s)
- Zeng-Ji Zhao
- School
of Space Science and Physics, Shandong University, West Wenhua Road No.180, 264209 Weihai, China
| | - Xiao-Ling Qin
- School
of Space Science and Physics, Shandong University, West Wenhua Road No.180, 264209 Weihai, China
| | - Jing-Wen Cao
- School
of Space Science and Physics, Shandong University, West Wenhua Road No.180, 264209 Weihai, China
| | - Xu-Liang Zhu
- School
of Space Science and Physics, Shandong University, West Wenhua Road No.180, 264209 Weihai, China
| | - Ye-Chen Yang
- Department
of Physics, Southern University of Science
and Technology, Xueyuan Avenue No.1088, 518055 Shenzhen, China
| | - Hao-Cheng Wang
- School
of Space Science and Physics, Shandong University, West Wenhua Road No.180, 264209 Weihai, China
| | - Peng Zhang
- School
of Space Science and Physics, Shandong University, West Wenhua Road No.180, 264209 Weihai, China
- E-mail: . Tel.: +86-631-568-8751
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DFT Investigations of the Vibrational Spectra and Translational Modes of Ice II. Molecules 2019; 24:molecules24173135. [PMID: 31466370 PMCID: PMC6749557 DOI: 10.3390/molecules24173135] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Revised: 08/25/2019] [Accepted: 08/26/2019] [Indexed: 11/16/2022] Open
Abstract
The vibrational spectrum of ice II was investigated using the CASTEP code based on first-principles density functional theory (DFT). Based on good agreement with inelastic neutron scattering (INS), infrared (IR), and Raman experimental data, we discuss the translation, libration, bending, and stretching band using normal modes analysis method. In the translation band, we found that the four-bond and two-bond molecular vibration modes constitute three main peaks in accordance with INS ranging from 117 to 318 cm−1. We also discovered that the lower frequencies are cluster vibrations that may overlap with acoustic phonons. Whale et al. found in ice XV that some intramolecular vibrational modes include many isolated-molecule stretches of only one O–H bond, whereas the other O–H bond does not vibrate. This phenomenon is very common in ice II, and we attribute it to local tetrahedral deformation. The pathway of combining normal mode analysis with experimental spectra leads to scientific assignments.
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Qin XL, Zhu XL, Cao JW, Jiang L, Gu Y, Wang XC, Zhang P. Computational Analysis of Exotic Molecular and Atomic Vibrations in Ice XV. Molecules 2019; 24:molecules24173115. [PMID: 31461964 PMCID: PMC6749349 DOI: 10.3390/molecules24173115] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Revised: 08/26/2019] [Accepted: 08/26/2019] [Indexed: 11/18/2022] Open
Abstract
It is always difficult to assign the peaks of a vibrational spectrum in the far-infrared region. The two distinct peaks seen in many ice phases are still a mystery to date. The normal modes of ice XV were calculated using the CASTEP code based on first-principles density functional theory. On the basis of vibrational modes analysis, we divided the translational modes into three categories: four-bond vibrations, which have the highest energy levels; two-bond vibrations, which have medium levels of energy; and relative vibrations between two sublattices, which have the lowest energy. Whale et al. found that some intramolecular stretching modes include the isolated vibration of only one O–H bond, whereas the others do not vibrate in ice XV. We verified this phenomenon in this study and attributed it to local tetrahedral deformation. Analysis of normal modes, especially in the translation and stretching band of ice XV, clarified the physical insights of the vibrational spectrum and can be used with other ice phases.
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Affiliation(s)
- Xiao-Ling Qin
- School of Space Science and Physics, Shandong University, Weihai, 264209, China
| | - Xu-Liang Zhu
- School of Space Science and Physics, Shandong University, Weihai, 264209, China
| | - Jing-Wen Cao
- School of Space Science and Physics, Shandong University, Weihai, 264209, China
| | - Lu Jiang
- School of Space Science and Physics, Shandong University, Weihai, 264209, China
| | - Yue Gu
- School of Space Science and Physics, Shandong University, Weihai, 264209, China
| | - Xue-Chun Wang
- School of Space Science and Physics, Shandong University, Weihai, 264209, China
| | - Peng Zhang
- School of Space Science and Physics, Shandong University, Weihai, 264209, China.
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Abstract
Natural gas hydrates are ice-like crystalline materials formed from natural gas and clathrate ice under high pressure and low temperature. Ice XVI, the first S-II type clathrate ice produced in the lab, was simulated by first-principles density functional theory with the CASTEP code. A 34-molecule supercell was built to mimic the hydrogen-disordered structure. The vibrational spectra were calculated as a reference for inelastic neutron scattering (INS), infrared (IR) absorption, and Raman scattering experiments. Two kinds of H-bond vibration modes corresponding to two different bond strengths were found in our previous studies. In this paper, the statistics of distribution calculated by integrating these two kinds of modes was found to match the phonon density of states (PDOS) very well. We confirmed that the two basic types of H-bonds also appeared in clathrate ice XVI. The typical normal modes were analyzed to illustrate the dynamic process of lattice vibrations.
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Moberg DR, Sharp PJ, Paesani F. Molecular-Level Interpretation of Vibrational Spectra of Ordered Ice Phases. J Phys Chem B 2018; 122:10572-10581. [DOI: 10.1021/acs.jpcb.8b08380] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Zhang K, Zhang P, Wang ZR, Zhu XL, Lu YB, Guan CB, Li Y. DFT Simulations of the Vibrational Spectrum and Hydrogen Bonds of Ice XIV. Molecules 2018; 23:molecules23071781. [PMID: 30029537 PMCID: PMC6099920 DOI: 10.3390/molecules23071781] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 07/18/2018] [Accepted: 07/18/2018] [Indexed: 11/16/2022] Open
Abstract
It is always a difficult task to assign the peaks recorded from a vibrational spectrum. Herein, we explored a new pathway of density functional theory (DFT) simulation to present three kinds of spectra of ice XIV that can be referenced as inelastic neutron scattering (INS), infrared (IR), and Raman experimental spectrum. The INS spectrum is proportional to the phonon density of states (PDOS) while the photon scattering signals reflect the normal vibration frequencies near the Brillouin zone (BZ) center. Based on good agreements with the experimental data, we identified the relative frequency and made scientific assignments through normal vibration modes analysis. The two hydrogen bond (H-bond) peaks among the ice phases from INS were discussed and the dynamic process of the H-bond vibrations was found to be classified into two basic modes. We deduced that two H-bond modes are a general rule among the ice family and more studies are ongoing to investigate this subject.
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Affiliation(s)
- Kai Zhang
- School of Space Science and Physics, Shandong University, Weihai 264209, China.
| | - Peng Zhang
- School of Space Science and Physics, Shandong University, Weihai 264209, China.
| | - Ze-Ren Wang
- School of Space Science and Physics, Shandong University, Weihai 264209, China.
| | - Xu-Liang Zhu
- School of Space Science and Physics, Shandong University, Weihai 264209, China.
| | - Ying-Bo Lu
- School of Space Science and Physics, Shandong University, Weihai 264209, China.
| | - Cheng-Bo Guan
- School of Space Science and Physics, Shandong University, Weihai 264209, China.
| | - Yanhui Li
- School of Space Science and Physics, Shandong University, Weihai 264209, China.
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