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Teixeira Campos P, Karkow Bones M, Siqueira da Silva RM. Energetic and Topological Supramolecular Study and Nucleation Mechanism Proposal of Halogenated Phenols. European J Org Chem 2022. [DOI: 10.1002/ejoc.202101574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Patrick Teixeira Campos
- Instituto Federal Sul-rio-grandense Engenharia Química Praça 20 de Setembro, 455 96015-360 Pelotas BRAZIL
| | - Mariana Karkow Bones
- Instituto Federal Sul-rio-grandense - Campus Pelotas: Instituto Federal de Educacao Ciencia e Tecnologia Sul-rio-grandense Engenharia Química Praça 20 de Setembro, 455 Pelotas BRAZIL
| | - Rubia Mara Siqueira da Silva
- Instituto Federal Sul-rio-grandense - Campus Pelotas: Instituto Federal de Educacao Ciencia e Tecnologia Sul-rio-grandense Química Praça 20 de Setembro, 455 Pelotas BRAZIL
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Teixeira Campos P, Machado Rodrigues G, Pereira Afonso L, Uecker Krüger V, Siqueira da Silva RM, Milani MA. Energetic and Topological Supramolecular Study and Nucleation Proposal of Halogenated Aryl Amides. CrystEngComm 2022. [DOI: 10.1039/d2ce00049k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A supramolecular study of 12 halogenated aryl amides (F, Cl, Br, I) in the ortho, meta, or para positions was realized. From mono crystal X-ray diffraction data and theoretical calculations...
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P. Copetti JP, Salbego PRS, Orlando T, Rosa JML, Fiss GF, G. de Oliveira JP, A. Vasconcellos MLA, Zanatta N, G. Bonacorso H, Martins MAP. Substituent effects on the crystallization mechanisms of 7-chloro-4-substituted-quinolines. CrystEngComm 2020. [DOI: 10.1039/d0ce00214c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The crystallization mechanisms of a series of fourteen 7-chloro-4-substituted-quinolines were proposed based on a retrocrystallization approach using the supramolecular cluster as demarcation.
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Affiliation(s)
- João P. P. Copetti
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Department of Chemistry
- Federal University of Santa Maria (UFSM)
- Santa Maria
- Brazil
| | - Paulo R. S. Salbego
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Department of Chemistry
- Federal University of Santa Maria (UFSM)
- Santa Maria
- Brazil
| | - Tainára Orlando
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Department of Chemistry
- Federal University of Santa Maria (UFSM)
- Santa Maria
- Brazil
| | - Jéssica M. L. Rosa
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Department of Chemistry
- Federal University of Santa Maria (UFSM)
- Santa Maria
- Brazil
| | - Gabriela F. Fiss
- Department of Chemistry
- Federal University of Paraíba (UFPB)
- João Pessoa
- Brazil
| | | | | | - Nilo Zanatta
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Department of Chemistry
- Federal University of Santa Maria (UFSM)
- Santa Maria
- Brazil
| | - Helio G. Bonacorso
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Department of Chemistry
- Federal University of Santa Maria (UFSM)
- Santa Maria
- Brazil
| | - Marcos A. P. Martins
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Department of Chemistry
- Federal University of Santa Maria (UFSM)
- Santa Maria
- Brazil
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Supramolecular self-assembly and thermodynamic properties of 5-aryl-1-(1,1-dimethylethyl)-1H-pyrazoles in the crystalline state. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.06.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Abstract
In this paper, theories on anisotropic crystal growth and crystallization of atropisomers are reviewed and a model for anisotropic crystal growth from solution containing slow inter-converting conformers is presented. The model applies to systems with growth-dominated crystallization from solutions and assumes that only one conformation participates in the solute integration step and is present in the crystal lattice. Other conformers, defined as the wrong conformers, must convert to the right conformer before they can assemble to the crystal lattice. The model presents a simple implicit method for evaluating the growth inhibition effect by the wrong conformers. The crystal growth model applies to anisotropic growth in two main directions, namely a slow-growing face and a fast-growing face and requires the knowledge of solute crystal face integration coefficients in both directions. A parameter estimation algorithm was derived to extract those coefficients from data about temporal concentration and crystal size during crystallization and was designed to have a short run time, while providing a high-resolution estimation. The model predicts a size-dependent growth rate and simulations indicated that for a given seed size and solvent system and for an isothermal anti-solvent addition crystallization, the seed loading and the supersaturation at seeding are the main factors impacting the final aspect ratio. The model predicts a decrease of the growth inhibition effect by the wrong conformer with increasing temperature, likely due to faster equilibration between conformers and/or a decrease of the population of the wrong conformer, if of low energy, at elevated temperatures. Finally, the model predicts that solute surface integration becomes the rate-limiting mechanism for high solute integration activation energies, resulting in no impact of the WC on the overall crystal growth process.
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Salbego PRS, Bender CR, Orlando T, Moraes GA, Copetti JPP, Weimer GH, Bonacorso HG, Zanatta N, Hoerner M, Martins MAP. Supramolecular Similarity in Polymorphs: Use of Similarity Indices (I X). ACS OMEGA 2019; 4:9697-9709. [PMID: 31460060 PMCID: PMC6648757 DOI: 10.1021/acsomega.8b03660] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2018] [Accepted: 05/08/2019] [Indexed: 05/11/2023]
Abstract
A systematic investigation to assess the degree of similarity between polymorphs was carried out. A similarity indices (IX) approach was applied in ten series of polymorphs with different characteristics and number of molecules in the asymmetric unit. Geometric (ID), contact area (IC), and stabilization energy (IG) parameters were used. It was possible to situate each comparison in different regions of similarity within the polymorphism phenomenon and determine the boundaries between quasi-isostructural polymorphs and polymorphs of low similarity. The multiparameter IDCG index was used as a robust tool to determine the total similarity within the polymorphism phenomenon. The highest contribution of the stabilization energy parameter (45%) toward the final value of similarity (IDCG) was observed, followed by the contact area index (32%). The geometric index contributed approximately 23% to the final value of IDCG. This information reinforces the importance of the contact area and stabilization energy in assessing the degree of similarity between crystalline structures. A new descriptor (IQ) based on the comparison of the energetic contribution of intermolecular interaction types present in each crystal structure is presented. IQ can be a versatile tool and applicable even for systems that do not share any similarity.
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Affiliation(s)
- Paulo R. S. Salbego
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
- E-mail: (P.R.S.S.)
| | - Caroline R. Bender
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - Tainára Orlando
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - Guilherme A. Moraes
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - João P. P. Copetti
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - Gustavo H. Weimer
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - Helio G. Bonacorso
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - Nilo Zanatta
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - Manfredo Hoerner
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
| | - Marcos A. P. Martins
- Núcleo de Química
de Heterociclos (NUQUIMHE) and Núcleo
de Investigação de Triazenos e Complexos (NITRICO),
Department of Chemistry, Federal University
of Santa Maria (UFSM), 97105-900 Santa Maria, RS, Brazil
- E-mail: (M.A.P.M)
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Orlando T, Salbego PRS, Farias FFS, Weimer GH, Copetti JPP, Bonacorso HG, Zanatta N, Hoerner M, Berná J, Martins MAP. Crystallization Mechanisms Applied to Understand the Crystal Formation of Rotaxanes. European J Org Chem 2019. [DOI: 10.1002/ejoc.201801870] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Tainára Orlando
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - Paulo R. S. Salbego
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - Fellipe F. S. Farias
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - Gustavo H. Weimer
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - João P. P. Copetti
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - Helio G. Bonacorso
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - Nilo Zanatta
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - Manfredo Hoerner
- Núcleo de Investigação de Triazenos e Complexos (NITRICO); Departmento de Química; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
| | - José Berná
- Departmento de Química Orgánica; Faculdad de Química; Universidad de Murcia; 30100 Murcia Spain
| | - Marcos A. P. Martins
- Núcleo de Química de Heterociclos (NUQUIMHE); Department of Chemistry; Federal University of Santa Maria (UFSM); 97105-900 Santa Maria RS Brazil
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