1
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Korobeynikov NA, Usoltsev AN, Sokolov MN, Novikov AS, Adonin SA. Iodine-Rich Supramolecular Complexes of Chlorobismuthates(III): Unusual Lone Pair Activity and Features of Halogen Bonding in Crystals. Inorg Chem 2024. [PMID: 39250822 DOI: 10.1021/acs.inorgchem.4c02593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/11/2024]
Abstract
The first chrorobismuthate(III) supramolecular hybrids with halogen-bond-linked I2, (Py(CH2)2Py){[BiCl5](I2)} (1) and (Py(CH2)3Py){[BiCl5](I2)0.5} (2), were synthesized via the reaction between Bi2O3, I2, and salts of the corresponding cations in HCl. The compounds featured one- and two-dimensional (2D) supramolecular motifs built by I···Cl contacts; in the case of 1, Bi(III) is pentacoordinated due to the lone pair activity, which also interacted with I2 pi-orbitals, as confirmed by density functional theory (DFT) calculations. Both complexes exhibited moderate thermal stabilities and relatively narrow optical band gaps.
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Affiliation(s)
| | - Andrey N Usoltsev
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
| | - Maxim N Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
| | - Alexander S Novikov
- Saint Petersburg State University, Saint Petersburg 198504, Russia
- RUDN University, Moscow 117198, Russia
| | - Sergey A Adonin
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
- Favorsky Irkutsk Institute of Chemistry SB RAS, Irkutsk 664033, Russia
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2
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Yin C, Ye H, Hai Y, Zou H, You L. Aromatic-Carbonyl Interactions as an Emerging Type of Non-Covalent Interactions. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2310337. [PMID: 38561959 PMCID: PMC11165483 DOI: 10.1002/advs.202310337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 02/23/2024] [Indexed: 04/04/2024]
Abstract
Aromatic-carbonyl (Ar···C═O) interactions, attractive interactions between the arene plane and the carbon atom of carbonyl, are in the infancy as one type of new supramolecular bonding forces. Here the study and functionalization of aromatic-carbonyl interactions in solution is reported. A combination of aromatic-carbonyl interactions and dynamic covalent chemistry provided a versatile avenue. The stabilizing role and mechanism of arene-aldehyde/imine interactions are elucidated through crystal structures, NMR studies, and computational evidence. The movement of imine exchange equilibria further allowed the quantification of the interplay between arene-aldehyde/imine interactions and dynamic imine chemistry, with solvent effects offering another handle and matching the electrostatic feature of the interactions. Moreover, arene-aldehyde/imine interactions enabled the reversal of kinetic and thermodynamic selectivity and sorting of dynamic covalent libraries. To show the functional utility diverse modulation of fluorescence signals is realized with arene-aldehyde/imine interactions. The results should find applications in many aspects, including molecular recognition, assemblies, catalysis, and intelligent materials.
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Affiliation(s)
- Chaowei Yin
- State Key Laboratory of Structural ChemistryFujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouFujian350002China
- University of Chinese Academy of SciencesChinese Academy of SciencesBeijing100049China
| | - Hebo Ye
- State Key Laboratory of Structural ChemistryFujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouFujian350002China
| | - Yu Hai
- State Key Laboratory of Structural ChemistryFujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouFujian350002China
| | - Hanxun Zou
- State Key Laboratory of Structural ChemistryFujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouFujian350002China
| | - Lei You
- State Key Laboratory of Structural ChemistryFujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouFujian350002China
- University of Chinese Academy of SciencesChinese Academy of SciencesBeijing100049China
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3
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Romashev NF, Bakaev IV, Komlyagina VI, Abramov PA, Mirzaeva IV, Nadolinny VA, Lavrov AN, Kompan'kov NB, Mikhailov AA, Fomenko IS, Novikov AS, Sokolov MN, Gushchin AL. Iridium Complexes with BIAN-Type Ligands: Synthesis, Structure and Redox Chemistry. Int J Mol Sci 2023; 24:10457. [PMID: 37445638 DOI: 10.3390/ijms241310457] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 06/16/2023] [Accepted: 06/19/2023] [Indexed: 07/15/2023] Open
Abstract
A series of iridium complexes with bis(diisopropylphenyl)iminoacenaphtene (dpp-bian) ligands, [Ir(cod)(dpp-bian)Cl] (1), [Ir(cod)(NO)(dpp-bian)](BF4)2 (2) and [Ir(cod)(dpp-bian)](BF4) (3), were prepared and characterized by spectroscopic techniques, elemental analysis, X-ray diffraction analysis and cyclic voltammetry (CV). The structures of 1-3 feature a square planar backbone consisting of two C = C π-bonds of 1,5-cyclooctadiene (cod) and two nitrogen atoms of dpp-bian supplemented with a chloride ion (for 1) or a NO group (for 2) to complete a square-pyramidal geometry. In the nitrosyl complex 2, the Ir-N-O group has a bent geometry (the angle is 125°). The CV data for 1 and 3 show two reversible waves between 0 and -1.6 V (vs. Ag/AgCl). Reversible oxidation was also found at E1/2 = 0.60 V for 1. Magnetochemical measurements for 2 in a range from 1.77 to 300 K revealed an increase in the magnetic moment with increasing temperature up to 1.2 μB (at 300 K). Nitrosyl complex 2 is unstable in solution and loses its NO group to yield [Ir(cod)(dpp-bian)](BF4) (3). A paramagnetic complex, [Ir(cod)(dpp-bian)](BF4)2 (4), was also detected in the solution of 2 as a result of its decomposition. The EPR spectrum of 4 in CH2Cl2 is described by the spin Hamiltonian Ĥ = gβHŜ with S = 1/2 and gxx = gyy = 2.393 and gzz = 1.88, which are characteristic of the low-spin 5d7-Ir(II) state. DFT calculations were carried out in order to rationalize the experimental results.
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Affiliation(s)
- Nikolai F Romashev
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
| | - Ivan V Bakaev
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
- Department of Natural Sciences, Novosibirsk State University, Novosibirsk 630090, Russia
| | - Veronika I Komlyagina
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
- Department of Natural Sciences, Novosibirsk State University, Novosibirsk 630090, Russia
| | - Pavel A Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634034, Russia
| | - Irina V Mirzaeva
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
| | | | - Alexander N Lavrov
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
| | | | - Artem A Mikhailov
- Laboratoire de Cristallographie, Résonance Magnétique et Modélisations, Université de Lorraine, CNRS, CRM2, UMR 7036, 54000 Nancy, France
| | - Iakov S Fomenko
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Saint Petersburg 199034, Russia
- Research Institute of Chemistry, Peoples' Friendship University of Russia (RUDN University), Moscow 117198, Russia
| | - Maxim N Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
| | - Artem L Gushchin
- Nikolaev Institute of Inorganic Chemistry SB RAS, Novosibirsk 630090, Russia
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Wang Z, Wang W, Li HB. Tuning of the Electrostatic Potentials on the Surface of the Sulfur Atom in Organic Molecules: Theoretical Design and Experimental Assessment. Molecules 2023; 28:molecules28093919. [PMID: 37175329 PMCID: PMC10180200 DOI: 10.3390/molecules28093919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 05/01/2023] [Accepted: 05/04/2023] [Indexed: 05/15/2023] Open
Abstract
Noncovalent sulfur interactions are ubiquitous and play important roles in medicinal chemistry and organic optoelectronic materials. Quantum chemical calculations predicted that the electrostatic potentials on the surface of the sulfur atom in organic molecules could be tuned through the through-space effects of suitable substituents. This makes it possible to design different types of noncovalent sulfur interactions. The theoretical design was further confirmed by X-ray crystallographic experiments. The sulfur atom acts as the halogen atom acceptor to form the halogen bond in the cocrystal between 2,5-bis(2-pyridyl)-1,3,4-thiadiazole and 1,4-diiodotetrafluorobenzene, whereas it acts as the chalcogen atom donor to form the chalcogen bond in the cocrystal between 2,5-bis(3-pyridyl)-1,3,4-thiadiazole and 1,3,5-trifluoro-2,4,6-triiodobenzene.
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Affiliation(s)
- Ziyu Wang
- SDU-ANU Joint Science College, Shandong University, Weihai 264209, China
| | - Weizhou Wang
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, China
| | - Hai-Bei Li
- SDU-ANU Joint Science College, Shandong University, Weihai 264209, China
- Marine College, Shandong University, Weihai 264209, China
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5
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Two-dimensional ZnII coordination polymer based on 5-iodoisophthalate: synthesis, crystal and electronic structure. Russ Chem Bull 2023. [DOI: 10.1007/s11172-023-3722-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
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6
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Bondarenko MA, Zherebtsov DA, Novikov AS, Fedin VP, Adonin SA. TWO-DIMENSIONAL Cu(II) 5-IODOISOPHTHALATE WITH A 1,2-BIS(4-PYRIDYL)ETHYLENE LINKER: CRYSTAL STRUCTURE AND FEATURES OF ELECTRONIC STRUCTURE. J STRUCT CHEM+ 2023. [DOI: 10.1134/s0022476623010079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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7
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Is the phosphorous atom a stereogenic center? Crystallographic findings in five new dithiophosphonate compounds supported with non covalent interaction index (NCI), theoretical approach and spectroscopic analysis. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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8
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Sapronov AA, Artemjev AA, Burkin GM, Khrustalev VN, Kubasov AS, Nenajdenko VG, Gomila RM, Frontera A, Kritchenkov AS, Tskhovrebov AG. Robust Supramolecular Dimers Derived from Benzylic-Substituted 1,2,4-Selenodiazolium Salts Featuring Selenium⋯π Chalcogen Bonding. Int J Mol Sci 2022; 23:ijms232314973. [PMID: 36499302 PMCID: PMC9740427 DOI: 10.3390/ijms232314973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 11/25/2022] [Accepted: 11/27/2022] [Indexed: 12/02/2022] Open
Abstract
The series of benzylic-substituted 1,2,4-selenodiazolium salts were prepared via cyclization reaction between 2-pyridylselenyl chlorides and nitriles and fully characterized. Substitution of the Cl anion by weakly binding anions promoted the formation supramolecular dimers featuring four center Se2N2 chalcogen bonding and two antiparallel selenium⋯π interactions. Chalcogen bonding interactions were studied using density functional theory calculations, molecular electrostatic potential (MEP) surfaces, the quantum theory of atoms-in-molecules (QTAIM), and the noncovalent interaction (NCI) plot. The investigations revealed fundamental role of the selenium⋯π contacts that are stronger than the Se⋯N interactions in supramolecular dimers. Importantly, described herein, the benzylic substitution approach can be utilized for reliable supramolecular dimerization of selenodiazolium cations in the solid state, which can be employed in supramolecular engineering.
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Affiliation(s)
- Alexander A. Sapronov
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, 6 Miklukho-Maklaya Street, 117198 Moscow, Russia
| | - Alexey A. Artemjev
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, 6 Miklukho-Maklaya Street, 117198 Moscow, Russia
| | - Gleb M. Burkin
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, 6 Miklukho-Maklaya Street, 117198 Moscow, Russia
| | - Victor N. Khrustalev
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, 6 Miklukho-Maklaya Street, 117198 Moscow, Russia
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky Prosp., 119334 Moscow, Russia
| | - Alexey S. Kubasov
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, 31 Leninsky Prosp., 119071 Moscow, Russia
| | - Valentine G. Nenajdenko
- Department of Chemistry, M.V. Lomonosov Moscow State University, 1, Leninskie Gory, 119991 Moscow, Russia
| | - Rosa M. Gomila
- Departament de Química, Universitat de les Illes Balears, Crta de Valldemossa km 7.5, 07122 Palma de Mallorca (Baleares), Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Crta de Valldemossa km 7.5, 07122 Palma de Mallorca (Baleares), Spain
| | - Andreii S. Kritchenkov
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, 6 Miklukho-Maklaya Street, 117198 Moscow, Russia
- Institute of Technical Acoustics NAS of Belarus, Ludnikova Prosp. 13, 210009 Vitebsk, Belarus
| | - Alexander G. Tskhovrebov
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, 6 Miklukho-Maklaya Street, 117198 Moscow, Russia
- Correspondence:
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9
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Heteroleptic Zn(II)–Pentaiodobenzoate Complexes: Structures and Features of Halogen–Halogen Non-Covalent Interactions in Solid State. INORGANICS 2022. [DOI: 10.3390/inorganics10100151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Reactions between Zn(II) nitrate, pentaiodobenzoic acid (HPIBA) and different pyridines in dimethylformamide (DMF) result in the formation of the heteroleptic neutral complexes [Zn(3,5-MePy)2PIBA2] (1) and [Zn(DMF)3(NO3)PIBA] (2). Both compounds were isolated in pure form, as shown by the PXRD data. The features of specific non-covalent interactions involving halogen atoms (halogen bonding) were examined by means of DFT calculations (QTAIM analysis and the estimation of corresponding energies).
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10
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Osmanov VK, Chipinsky EV, Khrustalev VN, Novikov AS, Askerov RK, Chizhov AO, Borisova GN, Borisov AV, Grishina MM, Kurasova MN, Kirichuk AA, Peregudov AS, Kritchenkov AS, Tskhovrebov AG. Facile Access to 2-Selenoxo-1,2,3,4-tetrahydro-4-quinazolinone Scaffolds and Corresponding Diselenides via Cyclization between Methyl Anthranilate and Isoselenocyanates: Synthesis and Structural Features. Molecules 2022; 27:molecules27185799. [PMID: 36144534 PMCID: PMC9504104 DOI: 10.3390/molecules27185799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 09/01/2022] [Accepted: 09/02/2022] [Indexed: 11/16/2022] Open
Abstract
A practical method for the synthesis of 2-selenoxo-1,2,3,4-tetrahydro-4-quinazolinone was reported. The latter compounds were found to undergo facile oxidation with H2O2 into corresponding diselenides. Novel organoselenium derivatives were characterized by the 1H, 77Se, and 13C NMR spectroscopies, high-resolution electrospray ionization mass spectrometry, IR, elemental analyses (C, H, N), and X-ray diffraction analysis for several of them. Novel heterocycles exhibited multiple remarkable chalcogen bonding (ChB) interactions in the solid state, which were studied theoretically.
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Affiliation(s)
- Vladimir K. Osmanov
- Department of Chemistry, R.E. Alekseev Nizhny Novgorod State Technical University, Minin St., 24, 603155 Nizhny Novgorod, Russia
| | - Evgeniy V. Chipinsky
- Department of Chemistry, R.E. Alekseev Nizhny Novgorod State Technical University, Minin St., 24, 603155 Nizhny Novgorod, Russia
| | - Victor N. Khrustalev
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, Miklukho-Maklaya St., 6, 117198 Moscow, Russia
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prosp., 47, 119334 Moscow, Russia
| | - Alexander S. Novikov
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, Miklukho-Maklaya St., 6, 117198 Moscow, Russia
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia
| | | | - Alexander O. Chizhov
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prosp., 47, 119334 Moscow, Russia
| | - Galina N. Borisova
- Department of Chemistry, R.E. Alekseev Nizhny Novgorod State Technical University, Minin St., 24, 603155 Nizhny Novgorod, Russia
| | - Alexander V. Borisov
- Department of Chemistry, R.E. Alekseev Nizhny Novgorod State Technical University, Minin St., 24, 603155 Nizhny Novgorod, Russia
| | - Maria M. Grishina
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, Miklukho-Maklaya St., 6, 117198 Moscow, Russia
| | - Margarita N. Kurasova
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, Miklukho-Maklaya St., 6, 117198 Moscow, Russia
| | - Anatoly A. Kirichuk
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, Miklukho-Maklaya St., 6, 117198 Moscow, Russia
| | - Alexander S. Peregudov
- Institute of Organoelement Compounds of the Russian Academy of Sciences, Vavilov St., 28, 119991 Moscow, Russia
| | - Andreii S. Kritchenkov
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, Miklukho-Maklaya St., 6, 117198 Moscow, Russia
| | - Alexander G. Tskhovrebov
- Research Institute of Chemistry, Peoples’ Friendship University of Russia, Miklukho-Maklaya St., 6, 117198 Moscow, Russia
- N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, Ul. Kosygina, 4, 119991 Moscow, Russia
- Correspondence:
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11
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Parra RD. Cooperative strengthening of the halogen bond in cyclic clusters of iodine monofluoride, (IF)n (n = 3–8): From a closed-shell interaction, F-I…F, to a symmetric partly covalent interaction, F…I…F. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139825] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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12
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A. C. McDowel S, Arthurs VC. A comparative computational study of binary complexes of the structural isomers, propargylimine and acrylonitrile, with small molecules in the interstellar medium (ism). COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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13
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Selenium(IV) Polybromide Complexes: Structural Diversity Driven by Halogen and Chalcogen Bonding. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27165355. [PMID: 36014592 PMCID: PMC9415170 DOI: 10.3390/molecules27165355] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 08/15/2022] [Accepted: 08/17/2022] [Indexed: 11/17/2022]
Abstract
Reactions between bromoselenate(IV)-containing solutions, dibromine and salts of pyridinium-family organic cations resulted in structurally diverse, bromine-rich polybromine-bromoselenates(IV): (4-MePyH)5[Se2Br9][SeBr6](Br3)2 (1), (2-MePyH)2{[SeBr6](Br2)} (2), (PyH)2{[SeBr5]Br(Br2)2} (3), (1-MePy)2{[SeBr6](Br2)} (4). The compounds feature halogen and (in the case of 3) chalcogen bonding in solid state, resulting in formation of supramolecular architectures of different dimensionality. DFT calculations allowed estimation of the energies of non-covalent interactions in 1–4; additionally, characterization by Raman spectroscopy was performed.
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14
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Structural Organization of Dibromodiazadienes in the Crystal and Identification of Br···O Halogen Bonding Involving the Nitro Group. Molecules 2022; 27:molecules27165110. [PMID: 36014350 PMCID: PMC9414975 DOI: 10.3390/molecules27165110] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 08/08/2022] [Accepted: 08/09/2022] [Indexed: 11/17/2022] Open
Abstract
Nitro functionalized dibromodiazadiene dyes were prepared and fully characterized including X-ray single crystal analysis. Electron deficient dibromodiazadienes were found to be able to act as donors of halogen bonding (XB), while the nitro group acted as an acceptor of the XB. Depending on the substituents, the Br···O XB competed with other weak interactions, and for some of the dyes, they even outcompeted the XB involving the nitro group. However, the nitro functionalized dibromoalkenes 6a and 10a, which had only the nitro moiety as the most plausible acceptor of the XB, reliably formed 1D chains via Br⋯O XB. Experimental work was supported by the DFT calculations and topological analysis of the electron density distribution within the framework of Bader’s theory (QTAIM method).
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15
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Bifurcated Halogen Bond-Driven Supramolecular Double Helices from 1,2-Dihalotetrafluorobenzene and 2,2′-Bi(1,8-naphthyridine). CRYSTALS 2022. [DOI: 10.3390/cryst12070937] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
The unique enantiomeric pairs of double helices have been found in the structure of the cocrystal between 1,2-diiodotetrafluorobenzene and 2,2′-bi(1,8-naphthyridine). The formation of the supramolecular double helices is driven by the strong bifurcated iodine bonds which can force the herringbone packing arrangement of the molecules 2,2′-bi(1,8-naphthyridine) into a face-to-face π···π stacking pattern. In contrast, the cocrystal between 1,2-dibromotetrafluorobenzene (or 1,2-dichlorotetrafluorobenzene) and 2,2′-bi(1,8-naphthyridine) was not obtained under the same conditions. The interaction energies of the bifurcated halogen bonds and π···π stacking interactions were computed with the reliable dispersion-corrected density functional theory. The computational results show that the bifurcated iodine bond is much stronger than the bifurcated bromine bond and bifurcated chlorine bond, and it is the much stronger bifurcated iodine bond that makes the cocrystal of 1,2-diiodotetrafluorobenzene and 2,2′-bi(1,8-naphthyridine) much easier to be synthesized.
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16
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Zhang C, Wei F, Zhang X, Chen W, Chen C, Hao J, Jia B. Thermoelectric properties of monolayer MoSi2N4 and MoGe2N4 with large Seebeck coefficient and high carrier mobility: A first principles study. J SOLID STATE CHEM 2022. [DOI: 10.1016/j.jssc.2022.123447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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17
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Rajakumar K, Sharutin VV, Adonin SA, Zherebtsov DA, Sakhapov IF, Islamov DR, Prabunatan P, Vershinin MA, Naifert SA, Polozov MA. DI- AND TETRAIODOXYLENES: STRUCTURE AND FEATURES OF NON-COVALENT INTERACTIONS IN A SOLID STATE. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622040138] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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18
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Onawole AT, Hussein IA, Saad MA, Ismail N, Alshami A, Nasser MS. Theoretical Studies of a Silica Functionalized Acrylamide for Calcium Scale Inhibition. Polymers (Basel) 2022; 14:polym14122333. [PMID: 35745909 PMCID: PMC9230130 DOI: 10.3390/polym14122333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 05/25/2022] [Accepted: 05/29/2022] [Indexed: 02/04/2023] Open
Abstract
The calcium carbonate (CaCO3) scale is one of the most common oilfield scales and oil and gas production bane. CaCO3 scale can lead to a sudden halt in production or, worst-case scenario, accidents; therefore, CaCO3 scale formation prevention is essential for the oil and gas industry. Scale inhibitors are chemicals that can mitigate this problem. We used two popular theoretical techniques in this study: Density Functional Theory (DFT) and Ab Initio Molecular Dynamics (AIMD). The objective was to investigate the inhibitory abilities of mixed oligomers, specifically acrylamide functionalized silica (AM-Silica). DFT studies indicate that Ca2+ does not bind readily to acryl acid and acrylamide; however, it has a good binding affinity with PAM and Silica functionalized PAM. The highest binding affinity occurs in the silica region and not the -CONH functional groups. AIMD calculations corroborate the DFT studies, as observed from the MD trajectory that Ca2+ binds to PAM-Silica by forming bonds with silicon; however, Ca2+ initially forms a bond with silicon in the presence of water molecules. This bonding does not last long, and it subsequently bonds with the oxygen atoms present in the water molecule. PAM-Silica is a suitable calcium scale inhibitor because of its high binding affinity with Ca2+. Theoretical studies (DFT and AIMD) have provided atomic insights on how AM-Silica could be used as an efficient scale inhibitor.
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Affiliation(s)
- Abdulmujeeb T. Onawole
- Gas Processing Center, College of Engineering, Qatar University, Doha P.O. Box 2713, Qatar; (A.T.O.); (M.A.S.); (M.S.N.)
| | - Ibnelwaleed A. Hussein
- Gas Processing Center, College of Engineering, Qatar University, Doha P.O. Box 2713, Qatar; (A.T.O.); (M.A.S.); (M.S.N.)
- Chemical Engineering Department, College of Engineering, Qatar University, Doha P.O. Box 2713, Qatar
- Correspondence: (I.A.H.); (A.A.)
| | - Mohammed A. Saad
- Gas Processing Center, College of Engineering, Qatar University, Doha P.O. Box 2713, Qatar; (A.T.O.); (M.A.S.); (M.S.N.)
- Chemical Engineering Department, College of Engineering, Qatar University, Doha P.O. Box 2713, Qatar
| | - Nadhem Ismail
- Department of Chemical Engineering, University of North Dakota, Grand Forks, ND 58202, USA;
| | - Ali Alshami
- Department of Chemical Engineering, University of North Dakota, Grand Forks, ND 58202, USA;
- Correspondence: (I.A.H.); (A.A.)
| | - Mustafa S. Nasser
- Gas Processing Center, College of Engineering, Qatar University, Doha P.O. Box 2713, Qatar; (A.T.O.); (M.A.S.); (M.S.N.)
- Chemical Engineering Department, College of Engineering, Qatar University, Doha P.O. Box 2713, Qatar
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19
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Modelling the Interaction between Carboxylic Acids and Zinc Oxide: Insight into Degradation of ZnO Pigments. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27113362. [PMID: 35684300 PMCID: PMC9181975 DOI: 10.3390/molecules27113362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 05/11/2022] [Accepted: 05/17/2022] [Indexed: 11/28/2022]
Abstract
Computational modelling applied to cultural heritage can assist the characterization of painting materials and help to understand their intrinsic and external degradation processes. The degradation of the widely employed zinc oxide (ZnO)—a white pigment mostly used in oil paints—leads to the formation of metal soaps, complexes of Zn ions and long-chain fatty acids coming from the degradation of the oil binder. Being a serious problem affecting the appearance and the structural integrity of many oil paintings, it is relevant to characterize the structure of these complexes and to understand the reaction pathways associated with this degradation process. Density functional theory (DFT) calculations were performed to investigate the adsorption of the acetate and acetic acid on relatively large ZnO clusters and the formation of Zn–acetate complexes. Carboxylic acids with longer alkyl chains were then investigated as more realistic models of the fatty acids present in the oil medium. In addition, DFT calculations using a periodic ZnO slab were performed in order to compare the obtained results at different levels of theory. Optimization calculations as well as the formation energies of the ZnO@carboxylate coupled systems and the thermodynamics leading to possible degradation products were computed. Our results highlight the potential for DFT calculations to provide a better understanding of oil paint degradation, with the aim of contributing to the development of strengthening and conservation strategies of paintings.
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20
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Cu(II) pentaiodobenzoate complexes: “super heavy carboxylates” featuring strong halogen bonding. Polyhedron 2022. [DOI: 10.1016/j.poly.2021.115644] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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21
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Zaguzin AS, Sukhikh TS, Sakhapov IF, Fedin VP, Sokolov MN, Adonin SA. Zn(II) and Co(II) 3D Coordination Polymers Based on 2-Iodoterephtalic Acid and 1,2-bis(4-pyridyl)ethane: Structures and Sorption Properties. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27041305. [PMID: 35209092 PMCID: PMC8876937 DOI: 10.3390/molecules27041305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 02/04/2022] [Accepted: 02/06/2022] [Indexed: 11/28/2022]
Abstract
Metal-organic frameworks [M2(2-I-bdc)2bpe] (M = Zn(II) (1), Co(II) (2), 2-I-bdc = 2-iodoterephtalic acid, and bpe = 1,2-bis(4-pyridyl)ethane) were prepared and characterized by X-ray diffractometry. Both compounds retain their 3D structure after the removal of guest DMF molecules. Selectivity of sorption of different organic substrates from the gas phase was investigated for both complexes.
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Affiliation(s)
- Alexander S. Zaguzin
- South Ural State University, Lenina St. 76, 454080 Chelyabinsk, Russia; (A.S.Z.); (I.F.S.)
- Nikolaev Institute of Inorganic Chemistry, SB RAS, Lavrentieva St. 3, 630090 Novosibirsk, Russia; (T.S.S.); (V.P.F.); (M.N.S.)
| | - Taisiya S. Sukhikh
- Nikolaev Institute of Inorganic Chemistry, SB RAS, Lavrentieva St. 3, 630090 Novosibirsk, Russia; (T.S.S.); (V.P.F.); (M.N.S.)
| | - Ilyas F. Sakhapov
- South Ural State University, Lenina St. 76, 454080 Chelyabinsk, Russia; (A.S.Z.); (I.F.S.)
- Arbuzov Institute of Organic and Physical Chemistry, RAS, Arbuzov St. 8, 420088 Kazan, Russia
| | - Vladimir P. Fedin
- Nikolaev Institute of Inorganic Chemistry, SB RAS, Lavrentieva St. 3, 630090 Novosibirsk, Russia; (T.S.S.); (V.P.F.); (M.N.S.)
| | - Maxim N. Sokolov
- Nikolaev Institute of Inorganic Chemistry, SB RAS, Lavrentieva St. 3, 630090 Novosibirsk, Russia; (T.S.S.); (V.P.F.); (M.N.S.)
| | - Sergey A. Adonin
- South Ural State University, Lenina St. 76, 454080 Chelyabinsk, Russia; (A.S.Z.); (I.F.S.)
- Nikolaev Institute of Inorganic Chemistry, SB RAS, Lavrentieva St. 3, 630090 Novosibirsk, Russia; (T.S.S.); (V.P.F.); (M.N.S.)
- Correspondence:
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22
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Song KY, Yang ZC, Zhou PK, Zong LL, Li HH, Jiang R, Chen ZR. Photo-sensitive hybrids constructed from diphenyliodonium and metal-thiocyanates: photo-induced structure and property transformations. CrystEngComm 2022. [DOI: 10.1039/d1ce01585k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
New hybrids constructed from diphenyliodonium and metal thiocyanates have been prepared, and their photo-induced structural transformations and corresponding color/fluorescence/magnetism variations have been investigated.
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Affiliation(s)
- Kai-Yue Song
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, P. R. China
| | - Zhen-Cong Yang
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, P. R. China
| | - Pan-Ke Zhou
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, P. R. China
| | - Lu-Lu Zong
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, P. R. China
| | - Hao-Hong Li
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, P. R. China
- Fujian Science & Technology Innovation Laboratory for Optoelectronic Information of China, Fuzhou, Fujian 350108, P. R. China
| | - Rong Jiang
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, P. R. China
| | - Zhi-Rong Chen
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, P. R. China
- Fujian Science & Technology Innovation Laboratory for Optoelectronic Information of China, Fuzhou, Fujian 350108, P. R. China
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23
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Sharutin VV, Sharutina OK, Efremov AN, Adonin SA. Stoichiometry-dependent oxidation of tris(2-methoxyphenyl)antimony with diiodine. MENDELEEV COMMUNICATIONS 2022. [DOI: 10.1016/j.mencom.2022.01.035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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24
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Torubaev YV, Skabitsky IV, Raghuvanshi A. The structural landscape of ferrocenyl polychalcogenides. J Organomet Chem 2021. [DOI: 10.1016/j.jorganchem.2021.122006] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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25
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Bondarenko MA, Novikov AS, Korolkov IV, Sokolov MN, Adonin SA. Cu(II) 2-iodobenzoates: precursor-dependent formation of paddlewheel-like [Cu2(OOCR)4L2] or [Cu2L4(OOCR)2Cl2] binuclear complexes. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2021.120436] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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26
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Adonin SA. CRYSTAL STRUCTURES OF BINUCLEAR CHLOROBISMUTHATE COMPLEXES WITH 3-METHYLPYRIDINIUM AND 4-IODOPYRIDINIUM CATIONS. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621080126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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27
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Bondarenko MA, Novikov AS, Chernova KV, Sokolov MN, Adonin SA. 2-METHYLPYRIDINIUM SALT OF PENTAIODOBENZOIC ACID: ROLE OF THE HALOGEN BOND IN THE FORMATION OF A CRYSTAL PACKING. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621080096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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28
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Shen S, Jing X, Zhang X, Li X, Zeng Y. The competition and cooperativity of hydrogen/halogen bond and π-hole bond involving the heteronuclear ethylene analogues. J Comput Chem 2021; 42:908-916. [PMID: 33729600 DOI: 10.1002/jcc.26513] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 02/07/2021] [Accepted: 03/01/2021] [Indexed: 11/08/2022]
Abstract
The noncovalent interactions involving heteronuclear ethylene analogues H2 CEH2 (E = Si, Ge and Sn) have been studied by the Møller-Plesset perturbation theory to investigate the competition and cooperativity between the hydrogen/halogen bond and π-hole bond. H2 CEH2 has a dual role of being a Lewis base and acid with the region of π-electron accumulation above the carbon atom and the region of π-electron depletion (π-hole) above the E atom to participate in the NCX···CE (X = H and Cl) hydrogen/halogen bond and CE···NCY (Y = H, Cl, Li and Na) π-hole bond, respectively. When HCN/ClCN interacts with H2 CEH2 by two sites, the strength of hydrogen bond/halogen bond is stronger than that of π-hole bond. The π-hole bond becomes obviously stronger when the metal substituent of YCN (Y = Li and Na) interacting with H2 CEH2 , showing the character of partial covalent, its strength is much greater than that of hydrogen/halogen bond. In the ternary complexes, both hydrogen/halogen bond and π-hole bond are simultaneously strengthened compared to those in the binary complexes, especially in the systems containing alkali metal.
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Affiliation(s)
- Shaojie Shen
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang, China
| | - Xinyue Jing
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang, China
| | - Xueying Zhang
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang, China.,Hebei Key Laboratory of Inorganic Nano-Materials, Hebei Normal University, Shijiazhuang, China
| | - Xiaoyan Li
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang, China.,Hebei Key Laboratory of Inorganic Nano-Materials, Hebei Normal University, Shijiazhuang, China
| | - Yanli Zeng
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang, China.,Hebei Key Laboratory of Inorganic Nano-Materials, Hebei Normal University, Shijiazhuang, China
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29
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Elgengehi SM, El-Taher S, Ibrahim MA, El-Kelany KE. Unexpected favourable noncovalent interaction between chlorine oxyanions (ClO−; x = 1–4) and benzene: Benchmarking DFT and SAPT methods with respect to CCSD(T). COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113214] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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30
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Bondarenko MA, Novikov AS, Abramov PA, Sakhapov IF, Sokolov MN, Adonin SA. 2,3,4,5-Tetraiodopyrrole as a building block for halogen bonding: Formation of supramolecular hybrids with organic iodide salts in solid state. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.129931] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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31
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Abramov PA, Novikov AS, Sokolov MN. Interactions of aromatic rings in the crystal structures of hybrid polyoxometalates and Ru clusters. CrystEngComm 2021. [DOI: 10.1039/d1ce00716e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Computational analysis for π–π interaction energies of {(arene)Ru}2+ containing complexes and relative group 5 hybrid polyoxometalates reveals different frameworks. Some perspectives on πOF materials processing and crystal engineering were discussed.
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Affiliation(s)
- Pavel A. Abramov
- Nikolaev Institute of Inorganic Chemistry, 3 Akad. Lavrentiev Ave., 630090, Russia
| | - Alexander S. Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab., 7/9, Saint Petersburg, Russia
| | - Maxim N. Sokolov
- Nikolaev Institute of Inorganic Chemistry, 3 Akad. Lavrentiev Ave., 630090, Russia
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32
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Torubaev YV, Skabitsky IV, Rozhkov AV, Galmés B, Frontera A, Kukushkin VY. Highly polar stacking interactions wrap inorganics in organics: lone-pair–π-hole interactions between the PdO 4 core and electron-deficient arenes. Inorg Chem Front 2021. [DOI: 10.1039/d1qi01067k] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Each PdO4 plane of Pd3(OAc)6 behaved as a 5-center nucleophile (O lone pairs and the dz2-PdII orbital) that interacts with π-donating arenes to afford highly polar circular stacking, where organics wrapped inorganics.
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Affiliation(s)
- Yury V. Torubaev
- N. S. Kurnakov Institute of General and Inorganic Chemistry, of Russian Academy of Sciences, Moscow, 119991 Russian Federation
| | - Ivan V. Skabitsky
- N. S. Kurnakov Institute of General and Inorganic Chemistry, of Russian Academy of Sciences, Moscow, 119991 Russian Federation
| | - Anton V. Rozhkov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034 Russian Federation
| | - Bartomeu Galmés
- Department of Chemistry, Universitat de les IllesBalears, 07122 Palma de Mallorca, Baleares, Spain
| | - Antonio Frontera
- Department of Chemistry, Universitat de les IllesBalears, 07122 Palma de Mallorca, Baleares, Spain
| | - Vadim Yu. Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034 Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, 656049 Barnaul, Russian Federation
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Nemec V, Lisac K, Bedeković N, Fotović L, Stilinović V, Cinčić D. Crystal engineering strategies towards halogen-bonded metal–organic multi-component solids: salts, cocrystals and salt cocrystals. CrystEngComm 2021. [DOI: 10.1039/d1ce00158b] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
This highlight presents an overview of the current advances in the preparation of halogen bonded metal–organic multi-component solids, including salts and cocrystals comprising neutral and ionic constituents.
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Affiliation(s)
- Vinko Nemec
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Katarina Lisac
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Nikola Bedeković
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Luka Fotović
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Vladimir Stilinović
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Dominik Cinčić
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
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34
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Local Vibrational Mode Analysis of π–Hole Interactions between Aryl Donors and Small Molecule Acceptors. CRYSTALS 2020. [DOI: 10.3390/cryst10070556] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
11 aryl–lone pair and three aryl–anion π –hole interactions are investigated, along with the argon–benzene dimer and water dimer as reference compounds, utilizing the local vibrational mode theory, originally introduced by Konkoli and Cremer, to quantify the strength of the π –hole interaction in terms of a new local vibrational mode stretching force constant between the two engaged monomers, which can be conveniently used to compare different π –hole systems. Several factors have emerged which influence strength of the π –hole interactions, including aryl substituent effects, the chemical nature of atoms composing the aryl rings/ π –hole acceptors, and secondary bonding interactions between donors/acceptors. Substituent effects indirectly affect the π –hole interaction strength, where electronegative aryl-substituents moderately increase π –hole interaction strength. N-aryl members significantly increase π –hole interaction strength, and anion acceptors bind more strongly with the π –hole compared to charge neutral acceptors (lone–pair donors). Secondary bonding interactions between the acceptor and the atoms in the aryl ring can increase π –hole interaction strength, while hydrogen bonding between the π –hole acceptor/donor can significantly increase or decrease strength of the π –hole interaction depending on the directionality of hydrogen bond donation. Work is in progress expanding this research on aryl π –hole interactions to a large number of systems, including halides, CO, and OCH3− as acceptors, in order to derive a general design protocol for new members of this interesting class of compounds.
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Abstract
The problem of non-covalent interactions in coordination and organometallic compounds is a hot topic in modern chemistry, material science, crystal engineering and related fields of knowledge. Researchers in various fields of chemistry and other disciplines (physics, crystallography, computer science, etc.) are welcome to submit their works on this topic for our Special Issue “Non-Covalent Interactions in Coordination and Organometallic Chemistry”. The aim of this Special Issue is to highlight and overview modern trends and draw the attention of the scientific community to various types of non-covalent interactions in coordination and organometallic compounds. In this editorial, I would like to briefly highlight the main successes of our research group in the field of the fundamental study of non-covalent interactions in coordination and organometallic compounds over the past 5 years.
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Katlenok EA, Haukka M, Levin OV, Frontera A, Kukushkin VY. Supramolecular Assembly of Metal Complexes by (Aryl)I⋅⋅⋅d[PtII] Halogen Bonds. Chemistry 2020; 26:7692-7701. [DOI: 10.1002/chem.202001196] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 03/31/2020] [Indexed: 12/14/2022]
Affiliation(s)
- Eugene A. Katlenok
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Matti Haukka
- Department of ChemistryUniversity of Jyväskylä P.O. Box 35 40014 Jyväskylä Finland
| | - Oleg V. Levin
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Antonio Frontera
- Department de QuímicaUniversitat de les Illes Balears Crta. de Valldemossa km 7.5 07122 Palma, de Mallorca Baleares Spain
| | - Vadim Yu. Kukushkin
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
- South Ural State University Lenin Av. 76 454080 Chelyabinsk Russian Federation
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New Crystal Forms for Biologically Active Compounds. Part 2: Anastrozole as N-Substituted 1,2,4-Triazole in Halogen Bonding and Lp-π Interactions with 1,4-Diiodotetrafluorobenzene. CRYSTALS 2020. [DOI: 10.3390/cryst10050371] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
For an active pharmaceutical ingredient, it is important to stabilize its specific crystal polymorph. If the potential interconversion of various polymorphs is not carefully controlled, it may lead to deterioration of the drug’s physicochemical profile and, ultimately, its therapeutic efficacy. The desired polymorph stabilization can be achieved via co-crystallization with appropriate crystallophoric excipients. In this work, we identified an opportunity for co-crystallization of anastrozole (ASZ), a well-known aromatase inhibitor useful in second-line therapy of estrogen-dependent breast cancer, with a classical XB donor, 1,2,4,5-tetrafluoro-3,6-diiodobenzene (1,4-FIB). In the X-ray structures of ASZ·1.5 (1,4-FIB) co-crystal, different non-covalent interactions involving hydrogen and halogen atoms were detected and studied by quantum chemical calculations and QTAIM analysis at the ωB97XD/DZP-DKH level of theory.
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38
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Bolotin DS, Soldatova NS, Demakova MY, Novikov AS, Ivanov DM, Aliyarova IS, Sapegin A, Krasavin M. Pentacoordinated silver(I) complex featuring 8-phenylquinoline ligands: Interplay of coordination bonds, semicoordination, and stacking interactions. Inorganica Chim Acta 2020. [DOI: 10.1016/j.ica.2020.119453] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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39
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Halogen Bonding Provides Heterooctameric Supramolecular Aggregation of Diaryliodonium Thiocyanate. CRYSTALS 2020. [DOI: 10.3390/cryst10030230] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The crystal structure of the newly synthesized 4-methoxyphenyl(phenyl)iodonium thiocyanate, [PhI(4-C6H4OMe)](SCN), represents the first example of 16-membered cyclic heterooctamer formed by halogen bonding between the iodonium cation and SCN−. Results of density functional theory (DFT) calculations followed by the topological analysis of the electron density distribution within the framework of the quantum theory of atoms in molecules (QTAIM) method at the ωB97XD/DZP-DKH level of theory reveal that energies of attractive intermolecular noncovalent interactions I···S and I···N (responsible for the formation of heterooctameric supramolecular clusters {PhI(4-C6H4OMe)}4·{SCN}4 in the solid state structure of [PhI(4-C6H4OMe)](SCN)) vary from 0.9 to 8.5 kcal/mol.
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40
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Jalilov A, Deats S, Albukhari M, Zeller M, Rosokha SV. Intermolecular Interactions between Halogen‐Substituted
p
‐Benzoquinones and Halide Anions: Anion‐π Complexes versus Halogen Bonding. Chempluschem 2020; 85:441-449. [DOI: 10.1002/cplu.202000012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Revised: 02/25/2020] [Indexed: 01/07/2023]
Affiliation(s)
- Almaz Jalilov
- Department of Chemistry King Fahd University of Petroleum and Minerals Dhahran Saudi Arabia 31261
| | - Spencer Deats
- Department of Chemistry Ball State University Muncie IN USA 47306
| | - Muath Albukhari
- Department of Chemistry King Fahd University of Petroleum and Minerals Dhahran Saudi Arabia 31261
| | - Matthias Zeller
- Department of Chemistry Purdue University West Lafayette IN USA 47907
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41
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Eliseeva AA, Ivanov DM, Novikov AS, Rozhkov AV, Kornyakov IV, Dubovtsev AY, Kukushkin VY. Hexaiododiplatinate(ii) as a useful supramolecular synthon for halogen bond involving crystal engineering. Dalton Trans 2020; 49:356-367. [DOI: 10.1039/c9dt04221k] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
By performing combined XRD and theoretical studies, we established the modes of REWGI⋯I–Pt XBs with [Pt2(μ-I)2I4]2−acting as an XB acceptor.
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Affiliation(s)
- Anastasiya A. Eliseeva
- Institute of Chemistry
- Saint Petersburg State University
- 199034 Saint Petersburg
- Russian Federation
| | - Daniil M. Ivanov
- Institute of Chemistry
- Saint Petersburg State University
- 199034 Saint Petersburg
- Russian Federation
| | - Alexander S. Novikov
- Institute of Chemistry
- Saint Petersburg State University
- 199034 Saint Petersburg
- Russian Federation
| | - Anton V. Rozhkov
- Institute of Chemistry
- Saint Petersburg State University
- 199034 Saint Petersburg
- Russian Federation
| | - Ilya V. Kornyakov
- Institute of Earth Sciences
- Saint Petersburg State University
- 199034 Saint Petersburg
- Russian Federation
| | - Alexey Yu. Dubovtsev
- Institute of Chemistry
- Saint Petersburg State University
- 199034 Saint Petersburg
- Russian Federation
| | - Vadim Yu. Kukushkin
- Institute of Chemistry
- Saint Petersburg State University
- 199034 Saint Petersburg
- Russian Federation
- Institute of Macromolecular Compounds
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42
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Kostenko EA, Baykov SV, Novikov AS, Boyarskiy VP. Nucleophilic properties of the positively charged metal center in the solid state structure of Palladium(II)-Terpyridine complex. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.126957] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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43
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Suslonov VV, Eliseeva AA, Novikov AS, Ivanov DM, Dubovtsev AY, Bokach NA, Kukushkin VY. Tetrachloroplatinate(ii) anion as a square-planar tecton for crystal engineering involving halogen bonding. CrystEngComm 2020. [DOI: 10.1039/d0ce00576b] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The tetrachloroplatinate(ii) anion behaves as a useful XB-accepting tecton toward sigma-hole-donating organohalide species.
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Affiliation(s)
- Vitalii V. Suslonov
- Institute of Chemistry
- Saint Petersburg State University
- Universitetskaya Nab. 7/9
- Saint Petersburg
- Russian Federation
| | - Anastasiya A. Eliseeva
- Institute of Chemistry
- Saint Petersburg State University
- Universitetskaya Nab. 7/9
- Saint Petersburg
- Russian Federation
| | - Alexander S. Novikov
- Institute of Chemistry
- Saint Petersburg State University
- Universitetskaya Nab. 7/9
- Saint Petersburg
- Russian Federation
| | - Daniil M. Ivanov
- Institute of Chemistry
- Saint Petersburg State University
- Universitetskaya Nab. 7/9
- Saint Petersburg
- Russian Federation
| | - Alexey Yu. Dubovtsev
- Institute of Chemistry
- Saint Petersburg State University
- Universitetskaya Nab. 7/9
- Saint Petersburg
- Russian Federation
| | - Nadezhda A. Bokach
- Institute of Chemistry
- Saint Petersburg State University
- Universitetskaya Nab. 7/9
- Saint Petersburg
- Russian Federation
| | - Vadim Yu. Kukushkin
- Institute of Chemistry
- Saint Petersburg State University
- Universitetskaya Nab. 7/9
- Saint Petersburg
- Russian Federation
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