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Li H, Wang J, Warr GG, Atkin R. Nanostructure and Dynamics of the Locally Concentrated Ionic Liquid 2:1 (wt:wt) HMIM FAP:TFTFE and HMIM FAP on Graphite and Gold Electrodes as a Function of Potential. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024:e2403109. [PMID: 39105361 DOI: 10.1002/smll.202403109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 07/26/2024] [Indexed: 08/07/2024]
Abstract
Video-rate atomic force microscopy (AFM) is used to record the near-surface nanostructure and dynamics of one pure ionic liquid (IL), 1-hexyl-3-methylimidazolium tris(pentafluoroethyl)trifluorophosphate (HMIM FAP), and a locally-concentrated IL comprising HMIM FAP with the low viscosity diluent 1,1,2,2-tetrafluoroethyl 2,2,2-trifluoroethyl ether (TFTFE), on highly oriented pyrolytic graphite (HOPG) and Au(111) electrodes as a function of potential. Over the potential range measured (open-circuit potential ± 1 V), different near-surface nanostructures are observed. For pure HMIM FAP, globular aggregates align in rows on HOPG, whereas elongated and worm-like nanostructures form on Au(111). For 2:1 (wt:wt) HMIM FAP:TFTFE, larger and less defined diluent swollen IL aggregates are present on both electrodes. Long-lived near-surface nanostructures for HMIM FAP and the 2:1 (wt:wt) HMIM FAP:TFTFE persist on both electrodes. 2:1 (wt:wt) HMIM FAP:TFTFE mixture diffuses more rapidly than pure HMIM FAP on both electrodes with obviously higher diffusion coefficients on HOPG than on Au(111) due to weaker electrostatic and solvophobic interactions between near-surface aggregates and Stern layer ions. These outcomes provide valuable insights for a wide range of IL applications in interface sciences, including electrolytes, catalysts, lubricants, and sensors.
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Affiliation(s)
- Hua Li
- School of Molecular Sciences, The University of Western Australia, Perth, WA, 6009, Australia
- Centre for Microscopy, Characterisation and Analysis, The University of Western Australia, Perth, WA, 6009, Australia
| | - Jianan Wang
- School of Molecular Sciences, The University of Western Australia, Perth, WA, 6009, Australia
| | - Gregory G Warr
- School of Chemistry and Sydney Nano Institute, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Rob Atkin
- School of Molecular Sciences, The University of Western Australia, Perth, WA, 6009, Australia
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Li Q, Zhu G, Liu Z, Xu J. Molecular dynamics simulation studies on the ionic liquid N-butylpyridinium tetrafluoroborate on the gold surface. Heliyon 2024; 10:e32710. [PMID: 38975103 PMCID: PMC11225740 DOI: 10.1016/j.heliyon.2024.e32710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 05/26/2024] [Accepted: 06/07/2024] [Indexed: 07/09/2024] Open
Abstract
The study of solid/liquid interface is of great significance for understanding various phenomena such as the nanostructure of the interface, liquid wetting, crystal growth and nucleation. In this work, the nanostructure of the pyridinium ionic liquid [BPy]BF4 on different gold surfaces was studied by molecular dynamics simulation. The results indicate that the density of the ionic liquids near the gold surface is significantly higher than that in the bulk phase. Cation's tail (the alkyl chain) orients parallel to the surface under all studied conditions. Cation's head (the pyridine ring) orientation varies from parallel to perpendicular, which depends on the temperature and corrugation of the Au(hkl) surface. Interestingly, analysis of simulated mass and number densities revealed that surface corrugation randomizes the cations packing. On smooth Au(111) and Au(100) surfaces, parallel and perpendicular orientations are well distinguished for densely packed cations. While on corrugated Au(110), cations' packing density and order are decreased. Overall, this study explores the adsorption effect of the gold surface on ionic liquids, providing some valuable insights into their behavior on the solid/liquid interface.
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Affiliation(s)
- Qiang Li
- Anhui Province Key Laboratory for Control and Applications of Optoelectronic Information Materials, School of Physics and Electronic Information, Anhui Normal University, Wuhu, 241002, China
- Faculty of Engineering, Anhui Sanlian University, Hefei, 230601, China
| | - Guanglai Zhu
- Anhui Province Key Laboratory for Control and Applications of Optoelectronic Information Materials, School of Physics and Electronic Information, Anhui Normal University, Wuhu, 241002, China
| | - Zhicong Liu
- Anhui Province Key Laboratory for Control and Applications of Optoelectronic Information Materials, School of Physics and Electronic Information, Anhui Normal University, Wuhu, 241002, China
| | - Jianqiang Xu
- Anhui Province Key Laboratory for Control and Applications of Optoelectronic Information Materials, School of Physics and Electronic Information, Anhui Normal University, Wuhu, 241002, China
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Li H, Wang J, Warr GG, Atkin R. Effect of Potential on the Nanostructure Dynamics of Ethylammonium Nitrate at a Graphite Electrode. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2306011. [PMID: 37806754 DOI: 10.1002/smll.202306011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 09/20/2023] [Indexed: 10/10/2023]
Abstract
Video-rate atomic force microscopy (AFM) is used to study the near-surface nanostructure dynamics of the ionic liquid ethylammonium nitrate (EAN) at a highly oriented pyrolytic graphite (HOPG) electrode as a function of potential in real-time for the first time. The effects of varying the surface potential and adding 10 wt% water on the nanostructure diffusion coefficient are probed. For both EAN and the 90 wt% EAN-water mixture, disk-like features ≈9 nm in diameter and 1 nm in height form above the Stern layer at all potentials. The nanostructure diffusion coefficient increases with potential (from OCP -0.5 V to OCP +0.5 V) and with added water. Nanostructure dynamics depends on both the magnitude and direction of the potential change. Upon switching the potential from OCP -0.5 V to OCP +0.5 V, a substantial increase in the diffusion coefficients is observed, likely due to the absence of solvophobic interactions between the nitrate (NO3 - ) anions and the ethylammonium (EA+ ) cations in the near-surface region. When the potential is reversed, EA+ is attracted to the Stern layer to replace NO3 - , but its movement is hindered by solvophobic attractions. The outcomes will aid applications, including electrochemical devices, catalysts, and lubricants.
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Affiliation(s)
- Hua Li
- School of Molecular Sciences, The University of Western Australia, Perth, Western Australia, 6009, Australia
- Centre for Microscopy, Characterisation and Analysis, The University of Western Australia, Perth, Western Australia, 6009, Australia
| | - Jianan Wang
- School of Molecular Sciences, The University of Western Australia, Perth, Western Australia, 6009, Australia
| | - Gregory G Warr
- School of Chemistry and Sydney Nano Institute, The University of Sydney, Sydney, New South Wales, 2006, Australia
| | - Rob Atkin
- School of Molecular Sciences, The University of Western Australia, Perth, Western Australia, 6009, Australia
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Influence of Metal Salts Addition on Physical and Electrochemical Properties of Ethyl and Propylammonium Nitrate. Int J Mol Sci 2022; 23:ijms232416040. [PMID: 36555674 PMCID: PMC9781049 DOI: 10.3390/ijms232416040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 12/12/2022] [Accepted: 12/13/2022] [Indexed: 12/23/2022] Open
Abstract
In this work, we deepen in the characterization of two protic ionic liquids (PILs), ethylammonium nitrate (EAN) and propylammonium nitrate (PAN). With this aim, we determined the influence of inorganic nitrate salts addition on their physical properties and their electrochemical potential window (EPW). Thus, experimental measurements of electrical conductivity, density, viscosity, refractive index and surface tension of mixtures of {EAN or PAN + LiNO3, Ca(NO3)2, Mg(NO3)2 or Al(NO3)3} at a temperature range between 5 and 95 °C are presented first, except for the last two properties which were measured at 25 °C. In the second part, the corresponding EPWs were determined at 25 °C by linear sweep voltammetry using three different electrochemical cells. Effect of the salt addition was associated mainly with the metal cation characteristics, so, generally, LiNO3 showed the lower influence, followed by Ca(NO3)2, Mg(NO3)2 or Al(NO3)3. The results obtained for the EAN + LiNO3 mixtures, along with those from a previous work, allowed us to develop novel predictive equations for most of the presented physical properties as functions of the lithium salt concentration, the temperature and the water content. Electrochemical results showed that a general order of EPW can be established for both PILs, although exceptions related to measurement conditions and the properties of the mixtures were found.
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Ubovich M, Egorov AV, Chizhik VI. Effect of Al(NO3)3 Addition on Molecular Mobility in Ethylammonium Nitrate According to Molecular Dynamics Simulation Data. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2022. [DOI: 10.1134/s0036024422070330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kilymis D, Bartók AP, Pickard CJ, Forse AC, Merlet C. Efficient prediction of nucleus independent chemical shifts for polycyclic aromatic hydrocarbons. Phys Chem Chem Phys 2020; 22:13746-13755. [PMID: 32537616 DOI: 10.1039/d0cp01705a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Nuclear Magnetic Resonance (NMR) is one of the most powerful experimental techniques to characterize the structure of molecules and confined liquids. Nevertheless, the complexity of the systems under investigation usually requires complementary computational studies to interpret the NMR results. In this work we focus on polycyclic aromatic hydrocarbons (PAHs), an important class of organic molecules which have been commonly used as simple analogues for the spectroscopic properties of more complex systems, such as porous disordered carbons. We use Density Functional Theory (DFT) to calculate 13C chemical shifts and Nucleus Independent Chemical Shifts (NICS) for 34 PAHs. The results show a clear molecular size dependence of the two quantities, as well as the convergence of the 13C NMR shifts towards the values observed for graphene. We then present two computationally cheap models for the prediction of NICS in simple PAHs. We show that while a simple dipolar model fails to produce accurate values, a perturbative tight-binding approach can be successfully applied for the prediction of NICS in this series of molecules, including some non-planar ones containing 5- and 7-membered rings. This model, one to two orders of magnitude faster than DFT calculations, is very promising and can be further refined in order to study more complex systems.
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Affiliation(s)
- Dimitrios Kilymis
- CIRIMAT, Université de Toulouse, CNRS, Université Toulouse 3 - Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse cedex 9, France. and Réseau sur le Stockage Électrochimique de l'Énergie (RS2E), Fédération de Recherche CNRS 3459, HUB de l'Énergie, Rue Baudelocque, 80039 Amiens, France
| | - Albert P Bartók
- Warwick Centre for Predictive Modelling, Department of Physics and School of Engineering, University of Warwick, Coventry, CV4 7AL, UK and Rutherford Appleton Laboratory, Scientific Computing Department, Science and Technology Facilities Council, Didcot, OX11 0QX, UK
| | - Chris J Pickard
- Department of Materials Science and Metallurgy, University of Cambridge, UK and Advanced Institute for Materials Research, Tohoku University, Aoba, Sendai 980-8577, Japan
| | - Alexander C Forse
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK and Department of Chemistry, Department of Chemical and Biomolecular Engineering, and Berkeley Energy and Climate Institute, University of California, Berkeley, CA94720, USA
| | - Céline Merlet
- CIRIMAT, Université de Toulouse, CNRS, Université Toulouse 3 - Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse cedex 9, France. and Réseau sur le Stockage Électrochimique de l'Énergie (RS2E), Fédération de Recherche CNRS 3459, HUB de l'Énergie, Rue Baudelocque, 80039 Amiens, France
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Dongerdiye R, Kamat P, Jain P, Warang P, Devendra R, Wasekar N, Sharma R, Mhaskar K, Madkaikar MR, Manglani MV, Kedar PS. Red cell adenylate kinase deficiency in India: identification of two novel missense mutations (c.71A>G and c.413G>A). J Clin Pathol 2019; 72:393-398. [PMID: 30918013 DOI: 10.1136/jclinpath-2019-205718] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 02/21/2019] [Accepted: 02/25/2019] [Indexed: 02/03/2023]
Abstract
Adenylate kinase (AK) deficiency is a rare erythroenzymopathy associated with hereditary nonspherocytic haemolytic anaemia along with mental/psychomotor retardation in few cases. Diagnosis of AK deficiency depends on the decreased level of enzyme activity in red cell and identification of a mutation in the AK1 gene. Until, only eight mutations causing AK deficiency have been reported in the literature. We are reporting two novel missense mutation (c.71A > G and c.413G > A) detected in the AK1 gene by next-generation sequencing (NGS) in a 6-year-old male child from India. Red cell AK enzyme activity was found to be 30% normal. We have screened a total of 32 family members of the patient and showed reduced red cell enzyme activity and confirm mutations by Sanger's sequencing. On the basis of Sanger sequencing, we suggest that the proband has inherited a mutation in AK1 gene exon 4 c.71A > G (p.Gln24Arg) from paternal family and exon 6 c.413G > A (p.Arg138His) from maternal family. Bioinformatics tools, such as SIFT, Polymorphism Phenotyping v.2, Mutation Taster, MutPred, also confirmed the deleterious effect of both the mutations. Molecular modelling suggests that the structural changes induced by p.Gln24Arg and p.Arg138His are pathogenic variants having a direct impact on the structural arrangement of the region close to the active site of the enzyme. In conclusion, NGS will be the best solution for diagnosis of very rare disorders leading to better management of the disease. This is the first report of the red cell AK deficiency from the Indian population.
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Affiliation(s)
- Rashmi Dongerdiye
- Department of Haematogenetics, National Institute of Immunohaematology, Mumbai, India
| | - Pranoti Kamat
- MCGM Comprehensive Thalassemia Care Pediatric Hematology-Oncology and Bone Marrow Transplantation Centre, Mumbai, India
| | - Punit Jain
- MCGM Comprehensive Thalassemia Care Pediatric Hematology-Oncology and Bone Marrow Transplantation Centre, Mumbai, India
| | - Prashant Warang
- Department of Haematogenetics, National Institute of Immunohaematology, Mumbai, India
| | - Rati Devendra
- Department of Haematogenetics, National Institute of Immunohaematology, Mumbai, India
| | - Nilesh Wasekar
- MCGM Comprehensive Thalassemia Care Pediatric Hematology-Oncology and Bone Marrow Transplantation Centre, Mumbai, India
| | - Ratna Sharma
- MCGM Comprehensive Thalassemia Care Pediatric Hematology-Oncology and Bone Marrow Transplantation Centre, Mumbai, India
| | - Ketaki Mhaskar
- MCGM Comprehensive Thalassemia Care Pediatric Hematology-Oncology and Bone Marrow Transplantation Centre, Mumbai, India
| | | | - Mamta V Manglani
- MCGM Comprehensive Thalassemia Care Pediatric Hematology-Oncology and Bone Marrow Transplantation Centre, Mumbai, India
| | - Prabhakar S Kedar
- Department of Haematogenetics, National Institute of Immunohaematology, Mumbai, India
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Gómez-González V, Docampo-Álvarez B, Montes-Campos H, Otero JC, Lago EL, Cabeza O, Gallego LJ, Varela LM. Solvation of Al3+ cations in bulk and confined protic ionic liquids: a computational study. Phys Chem Chem Phys 2018; 20:19071-19081. [DOI: 10.1039/c8cp02933d] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nanostructured solvation of Al3+ in an EAN ionic liquid, forming octahedral complexes with nitrate anions.
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Affiliation(s)
- Víctor Gómez-González
- Grupo de Nanomateriales
- Fotónica y Materia Blanda
- Departamento de Física de Partículas y Departamento de Física Aplicada
- Facultade de Física
- Universidade de Santiago de Compostela
| | - Borja Docampo-Álvarez
- Grupo de Nanomateriales
- Fotónica y Materia Blanda
- Departamento de Física de Partículas y Departamento de Física Aplicada
- Facultade de Física
- Universidade de Santiago de Compostela
| | - Hadrián Montes-Campos
- Grupo de Nanomateriales
- Fotónica y Materia Blanda
- Departamento de Física de Partículas y Departamento de Física Aplicada
- Facultade de Física
- Universidade de Santiago de Compostela
| | - Juan Carlos Otero
- Universidad de Málaga
- Andalucía Tech
- Facultad de Ciencias
- Departamento de Química Física
- Unidad Asociada CSIC
| | - Elena López Lago
- Grupo de Nanomateriales
- Fotónica y Materia Blanda
- Departamento de Física de Partículas y Departamento de Física Aplicada
- Facultade de Física
- Universidade de Santiago de Compostela
| | - Oscar Cabeza
- Departamento de Física y Ciencias de la Tierra
- Facultade de Ciencias
- Universidade da Coruña
- Campus A Zapateira s/n
- E-15071 A Coruña
| | - Luis J. Gallego
- Grupo de Nanomateriales
- Fotónica y Materia Blanda
- Departamento de Física de Partículas y Departamento de Física Aplicada
- Facultade de Física
- Universidade de Santiago de Compostela
| | - Luis M. Varela
- Grupo de Nanomateriales
- Fotónica y Materia Blanda
- Departamento de Física de Partículas y Departamento de Física Aplicada
- Facultade de Física
- Universidade de Santiago de Compostela
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