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For: Tanaka M, Tanimura Y. Multistate electron transfer dynamics in the condensed phase: Exact calculations from the reduced hierarchy equations of motion approach. J Chem Phys 2010;132:214502. [DOI: 10.1063/1.3428674] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
Number Cited by Other Article(s)
1
Guan W, Bao P, Peng J, Lan Z, Shi Q. mpsqd: A matrix product state based Python package to simulate closed and open system quantum dynamics. J Chem Phys 2024;161:122501. [PMID: 39324531 DOI: 10.1063/5.0226214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Accepted: 09/06/2024] [Indexed: 09/27/2024]  Open
2
Humphries BS, Kinslow JC, Green D, Jones GA. Role of Quantum Information in HEOM Trajectories. J Chem Theory Comput 2024;20:5383-5395. [PMID: 38889316 PMCID: PMC11238535 DOI: 10.1021/acs.jctc.4c00144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 06/04/2024] [Accepted: 06/04/2024] [Indexed: 06/20/2024]
3
Zhang D, Zuo L, Ye L, Chen ZH, Wang Y, Xu RX, Zheng X, Yan Y. Hierarchical equations of motion approach for accurate characterization of spin excitations in quantum impurity systems. J Chem Phys 2023;158:014106. [PMID: 36610957 DOI: 10.1063/5.0131739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
4
Humphries BS, Green D, Jones GA. The influence of a Hamiltonian vibration vs a bath vibration on the 2D electronic spectra of a homodimer. J Chem Phys 2022;156:084103. [DOI: 10.1063/5.0077404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
5
Li T, Yan Y, Shi Q. A low-temperature quantum Fokker-Planck equation that improvesthe numerical stability of the hierarchical equations of motion for the Brownian oscillator spectral density. J Chem Phys 2022;156:064107. [DOI: 10.1063/5.0082108] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
6
Zhang D, Ding X, Zhang HD, Zheng X, Yan Y. Adiabatic terminator for fermionic hierarchical equations of motion. CHINESE J CHEM PHYS 2021. [DOI: 10.1063/1674-0068/cjcp2110212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
7
Lai Y, Geva E. On simulating the dynamics of electronic populations and coherences via quantum master equations based on treating off-diagonal electronic coupling terms as a small perturbation. J Chem Phys 2021;155:204101. [PMID: 34852488 DOI: 10.1063/5.0069313] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
8
Nakamura K, Tanimura Y. Optical response of laser-driven charge-transfer complex described by Holstein-Hubbard model coupled to heat baths: Hierarchical equations of motion approach. J Chem Phys 2021;155:064106. [PMID: 34391366 DOI: 10.1063/5.0060208] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
9
Breuil G, Mangaud E, Lasorne B, Atabek O, Desouter-Lecomte M. Funneling dynamics in a phenylacetylene trimer: Coherent excitation of donor excitonic states and their superposition. J Chem Phys 2021;155:034303. [PMID: 34293889 DOI: 10.1063/5.0056351] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
10
Ueno S, Tanimura Y. Modeling and Simulating the Excited-State Dynamics of a System with Condensed Phases: A Machine Learning Approach. J Chem Theory Comput 2021;17:3618-3628. [PMID: 33999606 DOI: 10.1021/acs.jctc.1c00104] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
11
Borrelli R, Gelin MF. Finite temperature quantum dynamics of complex systems: Integrating thermo‐field theories and tensor‐train methods. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2021. [DOI: 10.1002/wcms.1539] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
12
Cainelli M, Tanimura Y. Exciton transfer in organic photovoltaic cells: A role of local and nonlocal electron–phonon interactions in a donor domain. J Chem Phys 2021;154:034107. [DOI: 10.1063/5.0036590] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Tanimura Y. Numerically "exact" approach to open quantum dynamics: The hierarchical equations of motion (HEOM). J Chem Phys 2021;153:020901. [PMID: 32668942 DOI: 10.1063/5.0011599] [Citation(s) in RCA: 163] [Impact Index Per Article: 54.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
14
Yan Y, Xing T, Shi Q. A new method to improve the numerical stability of the hierarchical equations of motion for discrete harmonic oscillator modes. J Chem Phys 2020;153:204109. [DOI: 10.1063/5.0027962] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
15
Acharyya N, Ovcharenko R, Fingerhut BP. On the role of non-diagonal system-environment interactions in bridge-mediated electron transfer. J Chem Phys 2020;153:185101. [PMID: 33187441 DOI: 10.1063/5.0027976] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Han L, Ullah A, Yan YA, Zheng X, Yan Y, Chernyak V. Stochastic equation of motion approach to fermionic dissipative dynamics. I. Formalism. J Chem Phys 2020;152:204105. [DOI: 10.1063/1.5142164] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
17
Mangaud E, Lasorne B, Atabek O, Desouter-Lecomte M. Statistical distributions of the tuning and coupling collective modes at a conical intersection using the hierarchical equations of motion. J Chem Phys 2019;151:244102. [DOI: 10.1063/1.5128852] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
18
Green D, Humphries BS, Dijkstra AG, Jones GA. Quantifying non-Markovianity in underdamped versus overdamped environments and its effect on spectral lineshape. J Chem Phys 2019;151:174112. [DOI: 10.1063/1.5119300] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
19
Madrid-Úsuga D, Susa CE, Reina JH. Room temperature quantum coherence vs. electron transfer in a rhodanine derivative chromophore. Phys Chem Chem Phys 2019;21:12640-12648. [PMID: 31155625 DOI: 10.1039/c9cp01398a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
20
Richter M, Fingerhut BP. Coupled excitation energy and charge transfer dynamics in reaction centre inspired model systems. Faraday Discuss 2019;216:72-93. [PMID: 31012450 DOI: 10.1039/c8fd00189h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
21
Han L, Zhang HD, Zheng X, Yan Y. On the exact truncation tier of fermionic hierarchical equations of motion. J Chem Phys 2018;148:234108. [PMID: 29935503 DOI: 10.1063/1.5034776] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
22
Kananenka AA, Sun X, Schubert A, Dunietz BD, Geva E. A comparative study of different methods for calculating electronic transition rates. J Chem Phys 2018;148:102304. [DOI: 10.1063/1.4989509] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
23
Sakamoto S, Tanimura Y. Exciton-Coupled Electron Transfer Process Controlled by Non-Markovian Environments. J Phys Chem Lett 2017;8:5390-5394. [PMID: 29039960 DOI: 10.1021/acs.jpclett.7b01535] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
24
Dijkstra AG, Prokhorenko VI. Simulation of photo-excited adenine in water with a hierarchy of equations of motion approach. J Chem Phys 2017;147:064102. [DOI: 10.1063/1.4997433] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
25
Ikeda T, Tanimura Y. Probing photoisomerization processes by means of multi-dimensional electronic spectroscopy: The multi-state quantum hierarchical Fokker-Planck equation approach. J Chem Phys 2017;147:014102. [DOI: 10.1063/1.4989537] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
26
Song K, Shi Q. Theoretical study of photoinduced proton coupled electron transfer reaction using the non-perturbative hierarchical equations of motion method. J Chem Phys 2017. [DOI: 10.1063/1.4982928] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
27
Fujihashi Y, Chen L, Ishizaki A, Wang J, Zhao Y. Effect of high-frequency modes on singlet fission dynamics. J Chem Phys 2017;146:044101. [DOI: 10.1063/1.4973981] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
28
Kramer T, Rodríguez M, Zelinskyy Y. Modeling of Transient Absorption Spectra in Exciton–Charge-Transfer Systems. J Phys Chem B 2017;121:463-470. [DOI: 10.1021/acs.jpcb.6b09858] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
29
Ding JJ, Zhang HD, Wang Y, Xu RX, Zheng X, Yan Y. Minimum-exponents ansatz for molecular dynamics and quantum dissipation. J Chem Phys 2016;145:204110. [DOI: 10.1063/1.4967964] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
30
Zhang PP, Eisfeld A. Non-Perturbative Calculation of Two-Dimensional Spectra Using the Stochastic Hierarchy of Pure States. J Phys Chem Lett 2016;7:4488-4494. [PMID: 27775345 DOI: 10.1021/acs.jpclett.6b02111] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
31
When do perturbative approaches accurately capture the dynamics of complex quantum systems? Sci Rep 2016;6:28204. [PMID: 27335176 PMCID: PMC4917862 DOI: 10.1038/srep28204] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Accepted: 05/25/2016] [Indexed: 12/20/2022]  Open
32
Ye L, Wang X, Hou D, Xu RX, Zheng X, Yan Y. HEOM-QUICK: a program for accurate, efficient, and universal characterization of strongly correlated quantum impurity systems. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1269] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
33
Sun X, Geva E. Nonequilibrium Fermi’s Golden Rule Charge Transfer Rates via the Linearized Semiclassical Method. J Chem Theory Comput 2016;12:2926-41. [DOI: 10.1021/acs.jctc.6b00236] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
34
Dijkstra AG, Tanimura Y. Linear and third- and fifth-order nonlinear spectroscopies of a charge transfer system coupled to an underdamped vibration. J Chem Phys 2016;142:212423. [PMID: 26049443 DOI: 10.1063/1.4917025] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Iles-Smith J, Dijkstra AG, Lambert N, Nazir A. Energy transfer in structured and unstructured environments: Master equations beyond the Born-Markov approximations. J Chem Phys 2016;144:044110. [DOI: 10.1063/1.4940218] [Citation(s) in RCA: 82] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
36
Sun X, Geva E. Exact vs. asymptotic spectral densities in the Garg-Onuchic-Ambegaokar charge transfer model and its effect on Fermi's golden rule rate constants. J Chem Phys 2016;144:044106. [PMID: 26827201 DOI: 10.1063/1.4940308] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
37
Firmino T, Mangaud E, Cailliez F, Devolder A, Mendive-Tapia D, Gatti F, Meier C, Desouter-Lecomte M, de la Lande A. Quantum effects in ultrafast electron transfers within cryptochromes. Phys Chem Chem Phys 2016;18:21442-57. [DOI: 10.1039/c6cp02809h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
38
Mangaud E, de la Lande A, Meier C, Desouter-Lecomte M. Electron transfer within a reaction path model calibrated by constrained DFT calculations: application to mixed-valence organic compounds. Phys Chem Chem Phys 2015;17:30889-903. [PMID: 26041466 DOI: 10.1039/c5cp01194a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
39
Jain A, Subotnik JE. Surface hopping, transition state theory, and decoherence. II. Thermal rate constants and detailed balance. J Chem Phys 2015;143:134107. [DOI: 10.1063/1.4930549] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
40
Kato A, Tanimura Y. Quantum heat transport of a two-qubit system: Interplay between system-bath coherence and qubit-qubit coherence. J Chem Phys 2015;143:064107. [DOI: 10.1063/1.4928192] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
41
Chen L, Zhao Y, Tanimura Y. Dynamics of a One-Dimensional Holstein Polaron with the Hierarchical Equations of Motion Approach. J Phys Chem Lett 2015;6:3110-3115. [PMID: 26267210 DOI: 10.1021/acs.jpclett.5b01368] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
42
Tsuchimoto M, Tanimura Y. Spins Dynamics in a Dissipative Environment: Hierarchal Equations of Motion Approach Using a Graphics Processing Unit (GPU). J Chem Theory Comput 2015;11:3859-65. [DOI: 10.1021/acs.jctc.5b00488] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
43
Migliore A, Naaman R, Beratan DN. Sensing of molecules using quantum dynamics. Proc Natl Acad Sci U S A 2015;112:E2419-28. [PMID: 25911636 PMCID: PMC4434700 DOI: 10.1073/pnas.1502000112] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
44
Liu H, Zhu L, Bai S, Shi Q. Reduced quantum dynamics with arbitrary bath spectral densities: hierarchical equations of motion based on several different bath decomposition schemes. J Chem Phys 2015;140:134106. [PMID: 24712779 DOI: 10.1063/1.4870035] [Citation(s) in RCA: 87] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
45
Tanimura Y. Real-time and imaginary-time quantum hierarchal Fokker-Planck equations. J Chem Phys 2015;142:144110. [DOI: 10.1063/1.4916647] [Citation(s) in RCA: 94] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
46
Liu J, Sun K, Wang X, Zhao Y. Quantifying non-Markovianity for a chromophore-qubit pair in a super-Ohmic bath. Phys Chem Chem Phys 2015;17:8087-96. [PMID: 25729785 DOI: 10.1039/c4cp04922e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
47
Quantum speed limits in open systems: non-Markovian dynamics without rotating-wave approximation. Sci Rep 2015;5:8444. [PMID: 25676589 PMCID: PMC4649631 DOI: 10.1038/srep08444] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Accepted: 01/20/2015] [Indexed: 12/20/2022]  Open
48
Hughes KH, Cahier B, Martinazzo R, Tamura H, Burghardt I. Non-Markovian reduced dynamics of ultrafast charge transfer at an oligothiophene–fullerene heterojunction. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.06.015] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
49
Tanimura Y. Reduced hierarchical equations of motion in real and imaginary time: Correlated initial states and thermodynamic quantities. J Chem Phys 2014;141:044114. [DOI: 10.1063/1.4890441] [Citation(s) in RCA: 121] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
50
Sun KW, Zhao Y. Dissipative dynamics of two-level systems in low temperature glasses. J Phys Chem A 2014;118:2220-7. [PMID: 24580530 DOI: 10.1021/jp5000717] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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