Vibrational spectroscopic signatures of hydrogen bond induced NH stretch–bend Fermi-resonance in amines: The methylamine clusters and other N–H⋯N hydrogen-bonded complexes

Growth mechanism of aromatic prebiotic molecules: insights from different processes of ion-molecule reactions in benzonitrile-ammonia and benzonitrile-methylamine clusters

Benzonitrile (BN, C6H5CN) has been detected in the cold molecular cloud Taurus molecular cloud-1 (TMC-1) in 2018, which is suggested to be a precursor in the formation of more complex nitrogen-containing aromatic interstellar compounds. In this study, we utilized mass-selected infrared (IR) photodissociation spectroscopy and quantum chemical calculations to investigate the structures and gaseous ion-molecule reactions of benzonitrile-ammonia (BN-NH3) and benzonitrile-methylamine (BN-MA) clusters. The spectral observations indicate that the cyclic hydrogen bonding structure predominates in both neutral clusters. After VUV (118 nm) single-photon ionization, a new C-N covalent bond formed between BN and NH3 in the (BN-NH3)+ cluster. However, proton sharing constitutes the primary structure of the (BN-MA)+ cluster. The two nitrogen-containing interstellar molecules react with BN to yield distinct products due to difference in charge distribution and molecular polarity in the ionized clusters. The reactions of BN with other molecules contribute to our understanding of the growth mechanisms of complex interstellar molecules.

Slowing Down the "Magic Bullet": Encapsulation of Imatinib in Fe-MOF for Cardiotoxicity Reduction and Improvement in Anticancer Activity

Imatinib, a small molecule kinase inhibitor, is used as a cancer growth blocker. However, one of its most serious side effects is congestive cardiac failure. Reducing drug toxicity may be achieved through the use of drug delivery systems. Biocompatible metal-organic framework (MOF) materials, namely FeMIL-100 and FeMIL-101-NH2, were employed as potential imatinib carriers. They efficiently delivered the drug as an anticancer agent while minimizing cardiotoxicity. Notably, the release of imatinib from FeMIL-100 was rapid in acidic conditions and slower in pH-neutral environments, allowing targeted delivery to cancer cells. The carrier's pH-dependent stability governed the drug release mechanism. Two release models-Korsmeyer-Peppas and Weibull-were fitted to the experimental data and discussed in terms of drug release from a rigid microporous matrix. Cytotoxicity tests were conducted on two cell lines: HL60 (a model cell line for acute myeloid leukemia) and H9c2 (a cell line for cardiomyocytes). Overall, the metal-organic framework (MOF) carriers mitigated imatinib's adverse effects without compromising its effectiveness.

Hydrogen bond network structures of protonated dimethylamine clusters H+(DMA)n (n = 3-7)

Infrared spectroscopy of protonated dimethylamine clusters, H+(DMA)n, (n = 3-7), and their Ar-tagged clusters was performed in the NH and CH stretching vibrational region to explore their hydrogen bond network structures. A stable isomer search and vibrational spectral simulations of the clusters were also carried out to support the interpretations of the observed spectra. Weakly hydrogen-bonded NH stretching vibrational bands, which are characteristic of cyclic structures of small-sized protonated clusters, are observed in the spectra of the Ar-tagged clusters of n ≥ 5, while only linear chain type structures are suggested for the Ar-tagged clusters of n = 3-4 and the bare clusters of all the sizes. These results demonstrate that the size and temperature dependence of the hydrogen bond network structures of the protonated dimethylamine clusters is analogous to that of protonated monohydric alcohol clusters.

In Situ IR Spectroscopy Studies of Atomic Layer-Deposited SnO2 on Formamidinium-Based Lead Halide Perovskite

Perovskite photovoltaics has achieved conversion efficiencies of 26.0% by optimizing the optoelectronic properties of the absorber and its interfaces with charge transport layers (CTLs). However, commonly adopted organic CTLs can lead to parasitic absorption and device instability. Therefore, metal oxides like atomic layer-deposited (ALD) SnO2 in combination with fullerene-based electron transport layers have been introduced to enhance mechanical and thermal stability. Instead, when ALD SnO2 is directly processed on the absorber, i.e., without the fullerene layer, chemical modifications of the inorganic fraction of the perovskite occur, compromising the device performance. This study focuses on the organic fraction, particularly the formamidinium cation (FA+), in a CsFAPb(I,Br)3 perovskite. By employing in situ infrared spectroscopy, we investigate the impact of ALD processing on the perovskite, such as vacuum level, temperature, and exposure to half and full ALD cycles using tetrakis(dimethylamido)-Sn(IV) (TDMA-Sn) and H2O. We observe that exposing the absorber to vacuum conditions or water half-cycles has a negligible effect on the chemistry of the perovskite. However, prolonged exposure at 100 °C for 90 min results in a loss of 0.7% of the total formamidinium-related vibrational features compared to the pristine perovskite. Supported by density functional theory calculations, we speculate that FA+ deprotonates and that formamidine desorbs from the perovskite surface. Furthermore, the interaction between TDMA-Sn and FA+ induces more decomposition of the perovskite surface compared to vacuum, temperature, or H2O exposure. During the exposure to 10 ALD half-cycles of TDMA-Sn, 4% of the total FA+-related infrared features are lost compared to the pristine perovskite. Additionally, IR spectroscopy suggests the formation and trapping of sym-triazine, i.e., a decomposition product of FA+. These studies enable to decouple the effects occurring during direct ALD processing on the perovskite and highlight the crucial role of the Sn precursor in affecting the perovskite surface chemistry and compromising the device performance.

Approaching the "Zundel" Limit: Tuning the Vibrational Coupling in N2H+Ng, Ng = {He, Ne, Ar, Kr, Xe, and Rn}

The diazenylium ion (N₂H⁺) is a ubiquitous ion in dense molecular clouds. This ion is often used as a dense gas tracer in outer space. Most of the previous works on diazenylium ion have focused on the shared-proton stretch band, ν_H⁺. In this work, we have performed reduced-dimensional calculations to investigate the vibrational structure of N₂H⁺Ng, Ng = {He, Ne, Ar, Kr, Xe, and Rn}. We demonstrate a few interesting things about this system. First, the vibrational coupling in N₂H⁺ can be tuned to switch on interesting anharmonic effects such as Fermi resonance or combination bands by tagging it with different noble gases. Second, a comparison of the vibrational spectrum from N₂H⁺He to N₂H⁺Rn shows that the ν_H⁺ can be swept from an "Eigen-like" to a "Zundel-like" limiting case. Anharmonic calculations were performed using a multilevel approach, which utilized the MP2 and CCSD(T) levels of theories. Binding energies for the elimination of Ng in N₂H⁺Ng are also reported.

A Handheld Visible Resonance Raman Analyzer Used in Intraoperative Detection of Human Glioma

There is still a lack of reliable intraoperative tools for glioma diagnosis and to guide the maximal safe resection of glioma. We report continuing work on the optical biopsy method to detect glioma grades and assess glioma boundaries intraoperatively using the VRR-LRRTM Raman analyzer, which is based on the visible resonance Raman spectroscopy (VRR) technique. A total of 2220 VRR spectra were collected during surgeries from 63 unprocessed fresh glioma tissues using the VRR-LRRTM Raman analyzer. After the VRR spectral analysis, we found differences in the native molecules in the fingerprint region and in the high-wavenumber region, and differences between normal (control) and different grades of glioma tissues. A principal component analysis–support vector machine (PCA-SVM) machine learning method was used to distinguish glioma tissues from normal tissues and different glioma grades. The accuracy in identifying glioma from normal tissue was over 80%, compared with the gold standard of histopathology reports of glioma. The VRR-LRRTM Raman analyzer may be a new label-free, real-time optical molecular pathology tool aiding in the intraoperative detection of glioma and identification of tumor boundaries, thus helping to guide maximal safe glioma removal and adjacent healthy tissue preservation.

Anharmonic IR spectra of solvated ammonium and aminium ions: resemblance between water and bisulfate solvations

In this work, we analyze the vibrational spectra of ammonium, methylammonium, and dimethylammonium ions solvated by either water molecules or bisulfate anions using anharmonic vibrational algorithms. Rich and complicated spectral features in the 2700-3200 cm^-1 region of the experimental spectra of these clusters are attributed to originate from strong Fermi resonance between hydrogen-bonded NH stretching fundamentals and NH bending overtones. Additional weaker bands around 2500-2600 cm^-1 in solvated aminium ions are assigned to the combination tones involving the CH-NH (methyl-amino) rocking modes. Furthermore, the qualitative resemblance in band positions and spectral patterns between two-water-solvated and two-bisulfate-solvated cations suggest a common vibrational coupling scheme beneath the two seemingly different micro-solvation environments.

Spectral Signatures of Protonated Noble Gas Clusters of Ne, Ar, Kr, and Xe: From Monomers to Trimers

The structures and spectral features of protonated noble gas clusters are examined using a first principles approach. Protonated noble gas monomers (NgH⁺) and dimers (NgH⁺Ng) have a linear structure, while the protonated noble gas trimers (Ng₃H⁺) can have a T-shaped or linear structure. Successive binding energies for these complexes are calculated at the CCSD(T)/CBS level of theory. Anharmonic simulations for the dimers and trimers unveil interesting spectral features. The symmetric NgH⁺Ng are charactized by a set of progression bands, which involves one quantum of the asymmetric Ng-H⁺ stretch with multiple quanta of the symmetric Ng-H⁺ stretch. Such a spectral signature is very robust and is predicted to be observed in both T-shaped and linear isomers of Ng₃H⁺. Meanwhile, for selected asymmetric NgH⁺Ng’, a Fermi resonance interaction involving the first overtone of the proton bend with the proton stretch is predicted to occur in ArH⁺Kr and XeH⁺Kr.

An ab initio anharmonic approach to IR, Raman and SFG spectra of the solvated methylammonium ion

The methylammonium ion (CH₃NH₃⁺, or noted as MA-H⁺) is one of the smallest organic ammonium ions that play important roles in organic-inorganic halide perovskites. Despite the simple structure, the vibrational spectra of MA-H⁺ exhibit complicated features in the 3 μm region which are sensitive to the solvation environment. In the present work, we have applied the ab initio anharmonic algorithm at the CCSD/aug-cc-pVDZ level to simulate the IR and Raman spectra of the solvated methylammonium ion, MA-H⁺⋯X₃, where X denotes the solvent molecules, to understand the Fermi resonance mechanism in which the overtones of NH bending modes are coupled with the fundamentals of NH stretching modes. The spectral features of the solvated clusters with proper solvent species resemble those observed in the perovskite crystal, indicating that they have similar solvation environments and hydrogen bond interactions. Therefore, a linkage between the gas-phase cluster models and the condensed-phase materials can be established, and our simulations and anharmonic analyses help in interpreting the spectral assignments of the observed IR and Raman spectra of perovskites reliably. Furthermore, we have extended this approach to the SFG spectra to demonstrate the selective appearance of bands depending on both the beam polarization configurations and the symmetry of vibrational modes.

Intraoperative detection of human meningioma using a handheld visible resonance Raman analyzer

To report for the first time the preliminary results for the evaluation of a VRR-LRR™ analyzer based on visible resonance Raman technique to identify human meningioma grades and margins intraoperatively. Unprocessed primary and recurrent solid human meningeal tissues were collected from 33 patients and underwent Raman analysis during surgeries. A total of 1180 VRR spectra were acquired from fresh solid tissues using a VRR-LRR™ analyzer. A confocal HR Evolution (HORIBA, France SAS) Raman system with 532-nm excitation wavelength was also used to collect data for part of the ex vivo samples after they were thawed from - 80 °C for comparison. The preliminary analysis led to the following observations. (1) The intensity ratio of VRR peaks of protein to fatty acid (I₂₉₃₄/I₂₈₈₈) decreased with the increase of meningioma grade. (2) The ratio of VRR peaks of phosphorylated protein to amid I (I₁₅₈₈/I₁₆₃₉) decreased for the higher grade of meningioma. (3) Three RR vibration modes at 1378, 3174, and 3224 cm^-1 which were related to the molecular vibrational bands of oxy-hemeprotein, amide B, and amide A protein significantly changed in peak intensities in the two types of meningioma tissues compared to normal tissue. (4) The changes in the intensities of VRR modes of carotenoids at 1156 and 1524 cm^-1 were also found in the meningioma boundary. The VRR-LRR™ analyzer demonstrates a new approach for label-free, rapid, and objective identification of primary human meningioma in quasi-clinical settings. The accuracy for detecting meningioma tissues using support vector machines (SVMs) was over 70% based on Raman peaks of key biomolecules and up to 100% using principal component analysis (PCA).

Fermi resonance switching in KrH+Rg and XeH+Rg (Rg = Ne, Ar, Kr, and Xe)

Matrix isolation experiments have been successfully employed to extensively study the infrared spectrum of several proton-bound rare gas complexes. Most of these studies have focused on the spectral signature for the H⁺ stretch (ν₃) and its combination bands with the intermolecular stretch coordinate (ν₁). However, little attention has been paid to the Fermi resonance interaction between the H⁺ stretch (ν₃) and H⁺ bend overtone (2ν₂) in the asymmetric proton-bound rare gas dimers, RgH⁺Rg'. In this work, we have investigated this interaction on KrH⁺Rg and XeH⁺Rg with Rg = (Ne, Ar, Kr, and Xe). A multilevel potential energy surface (PES) was used to simulate the vibrational structure of these complexes. This PES is a dual-level comprising of second-order Møller-Plesset perturbation theory and coupled-cluster singles doubles with perturbative triples [CCSD(T)] levels of ab initio theories. We found that when both the combination bands (nν₁ + ν₃) and bend overtone 2ν₂ compete to borrow intensity from the ν₃ band, the latter wins over the former, which then results in the suppression of the nν₁ + ν₃ bands. The current simulations offer new assignments for the ArH⁺Xe and KrH⁺Xe spectra. Complete basis set (CBS) binding energies for these complexes were also calculated at the CCSD(T)/CBS level.

Anharmonic Coupling Revealed by the Vibrational Spectra of Solvated Protonated Methanol: Fermi Resonance, Combination Bands, and Isotope Effect

Intriguing vibrational features of solvated protonated methanol between 2400-3800 cm^-1 are recorded by infrared predissociation spectroscopy. Positions of absorption bands corresponding to OH stretching modes are sensitive to changes in solvation environments, thus leading to changes in these vibrational features. Two anharmonic coupling mechanisms, Fermi resonance (FR) contributed by bending overtones and combination band (CB) associated with intermolecular stretching modes, are known to lead to band splitting of OH stretching fundamentals in solvated hydronium and ammonium. Theoretical analyses based on the ab initio anharmonic algorithm not only well reproduce the experimentally observed features but also elucidate the magnitudes of such couplings and the resulting interplay between these two mechanisms, which provide convincing assignments of the spectral patterns. Moreover, while the hydroxyl group plays the leading role in all the above-mentioned features, the role of the methyl group is also analyzed. Through the H/D isotope substitution, we identify overtones of the methyl-hydroxyl rocking modes and their participation in FR.

Understanding Fermi resonances in the complex vibrational spectra of the methyl groups in methylamines

Vibrational spectra of the methyl groups in mono-methylamine (MMA), dimethylamine (DMA), and trimethylamine (TMA) monomers and their clusters were measured in three experimental set-ups to capture their complex spectral features as a result of bend/umbrella-stretch Fermi resonance (FR). Multiple bands were observed between 2800 and 3000 cm-1 corresponding to the methyl groups for MMA and DMA. On the other hand, the corresponding spectrum of TMA is relatively simple, exhibiting only four prominent bands in the same frequency window, even though TMA has a larger number of methyl groups. The discrete variable representation (DVR) based ab initio anharmonic algorithm with potential energy surface (PES) at CCSD/aug-cc-pVDZ quality is able to capture all the experimentally observed spectral features across all three amines, and the constructed vibrational Hamiltonian was used to analyze the couplings that give rise to the observed FR patterns. It was observed that the vibrational coupling among CH stretch modes on different methyl groups is weak (less than 2 cm-1) and stronger vibrational coupling is found to localize within a methyl group. In MMA and DMA, the complex feature between 2850 and 2950 cm-1 is a consequence of closely packed overtone states that gain intensities by mixing with the stretching modes. The simplification of the spectral pattern of TMA can be understood by the red-shift of the symmetric CH3 stretching modes by about 80 cm-1 relative to MMA, which causes the symmetric CH3 stretch to shift outside the FR window.