1
|
Zhao T, Matthews DA. Analytic Gradients for Equation-of-Motion Coupled Cluster with Single, Double, and Perturbative Triple Excitations. J Chem Theory Comput 2024. [PMID: 39214857 DOI: 10.1021/acs.jctc.4c00752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Understanding the process of molecular photoexcitation is crucial in various fields, including drug development, materials science, photovoltaics, and more. The electronic vertical excitation energy is a critical property, for example in determining the singlet-triplet gap of chromophores. However, a full understanding of excited-state processes requires additional explorations of the excited-state potential energy surface and electronic properties, which is greatly aided by the availability of analytic energy gradients. Owing to its robust high accuracy over a wide range of chemical problems, equation-of-motion coupled cluster with single and double excitations (EOM-CCSD) is a powerful method for predicting excited-state properties, and the implementation of analytic gradients of many EOM-CCSD variants (excitation energies, ionization potentials, electron attachment energies, etc.) along with numerous successful applications highlights the flexibility of the method. In specific cases where a higher level of accuracy is needed or in more complex electronic structures, the inclusion of triple excitations becomes essential, for example, in the EOM-CCSD* approach of Saeh and Stanton. In this work, we derive and implement for the first time the analytic gradients of EOMEE-CCSD*, which also provides a template for analytic gradients of related excited-state methods with perturbative triple excitations. The capabilities of analytic EOMEE-CCSD* gradients are illustrated by several representative examples.
Collapse
Affiliation(s)
- Tingting Zhao
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75205, United States
| | - Devin A Matthews
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75205, United States
| |
Collapse
|
2
|
Avanessian C, Yarkony DR. The anion photoelectron spectrum and diabatization of tetrazolyl. J Chem Phys 2024; 160:214312. [PMID: 38842086 DOI: 10.1063/5.0214635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Accepted: 05/20/2024] [Indexed: 06/07/2024] Open
Abstract
The potential energy surface of tetrazolyl [cyclic (N4CH)] has a conical intersection seam between the two lowest-energy electronic states near the ground state minimum geometry. This work treats that molecule. The potential energy surfaces used in this study are based on a least-squares fitting procedure that includes ab initio energies, energy gradients, and derivative couplings described using polynomials up to fourth-order and ab initio data obtained from multireference configuration interaction wave functions. A five-electronic-state description was generated with a root mean square absolute energy error of 9.6 cm-1, compared to 326.8 cm-1 when only second-order terms were used. The time-independent multimode vibronic coupling in the KDC approximation was used to simulate and analyze the anion ultraviolet photoelectron spectrum of tetrazolide.
Collapse
Affiliation(s)
- Chris Avanessian
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, USA
| | - David R Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, USA
| |
Collapse
|
3
|
Mukherjee S, Mattos RS, Toldo JM, Lischka H, Barbatti M. Prediction Challenge: Simulating Rydberg photoexcited cyclobutanone with surface hopping dynamics based on different electronic structure methods. J Chem Phys 2024; 160:154306. [PMID: 38624122 DOI: 10.1063/5.0203636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 03/28/2024] [Indexed: 04/17/2024] Open
Abstract
This research examines the nonadiabatic dynamics of cyclobutanone after excitation into the n → 3s Rydberg S2 state. It stems from our contribution to the Special Topic of the Journal of Chemical Physics to test the predictive capability of computational chemistry against unseen experimental data. Decoherence-corrected fewest-switches surface hopping was used to simulate nonadiabatic dynamics with full and approximated nonadiabatic couplings. Several simulation sets were computed with different electronic structure methods, including a multiconfigurational wavefunction [multiconfigurational self-consistent field (MCSCF)] specially built to describe dissociative channels, multireference semiempirical approach, time-dependent density functional theory, algebraic diagrammatic construction, and coupled cluster. MCSCF dynamics predicts a slow deactivation of the S2 state (10 ps), followed by an ultrafast population transfer from S1 to S0 (<100 fs). CO elimination (C3 channel) dominates over C2H4 formation (C2 channel). These findings radically differ from the other methods, which predicted S2 lifetimes 10-250 times shorter and C2 channel predominance. These results suggest that routine electronic structure methods may hold low predictive power for the outcome of nonadiabatic dynamics.
Collapse
Affiliation(s)
| | - Rafael S Mattos
- Aix Marseille University, CNRS, ICR, Marseille 13397, France
| | - Josene M Toldo
- Aix Marseille University, CNRS, ICR, Marseille 13397, France
| | - Hans Lischka
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, USA
| | - Mario Barbatti
- Aix Marseille University, CNRS, ICR, Marseille 13397, France
- Institut Universitaire de France, Paris 75231, France
| |
Collapse
|
4
|
Li Manni G, Fdez. Galván I, Alavi A, Aleotti F, Aquilante F, Autschbach J, Avagliano D, Baiardi A, Bao JJ, Battaglia S, Birnoschi L, Blanco-González A, Bokarev SI, Broer R, Cacciari R, Calio PB, Carlson RK, Carvalho Couto R, Cerdán L, Chibotaru LF, Chilton NF, Church JR, Conti I, Coriani S, Cuéllar-Zuquin J, Daoud RE, Dattani N, Decleva P, de Graaf C, Delcey M, De Vico L, Dobrautz W, Dong SS, Feng R, Ferré N, Filatov(Gulak) M, Gagliardi L, Garavelli M, González L, Guan Y, Guo M, Hennefarth MR, Hermes MR, Hoyer CE, Huix-Rotllant M, Jaiswal VK, Kaiser A, Kaliakin DS, Khamesian M, King DS, Kochetov V, Krośnicki M, Kumaar AA, Larsson ED, Lehtola S, Lepetit MB, Lischka H, López Ríos P, Lundberg M, Ma D, Mai S, Marquetand P, Merritt ICD, Montorsi F, Mörchen M, Nenov A, Nguyen VHA, Nishimoto Y, Oakley MS, Olivucci M, Oppel M, Padula D, Pandharkar R, Phung QM, Plasser F, Raggi G, Rebolini E, Reiher M, Rivalta I, Roca-Sanjuán D, Romig T, Safari AA, Sánchez-Mansilla A, Sand AM, Schapiro I, Scott TR, Segarra-Martí J, Segatta F, Sergentu DC, Sharma P, Shepard R, Shu Y, Staab JK, Straatsma TP, Sørensen LK, Tenorio BNC, Truhlar DG, Ungur L, Vacher M, Veryazov V, Voß TA, Weser O, Wu D, Yang X, Yarkony D, Zhou C, Zobel JP, Lindh R. The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry. J Chem Theory Comput 2023; 19:6933-6991. [PMID: 37216210 PMCID: PMC10601490 DOI: 10.1021/acs.jctc.3c00182] [Citation(s) in RCA: 76] [Impact Index Per Article: 76.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Indexed: 05/24/2023]
Abstract
The developments of the open-source OpenMolcas chemistry software environment since spring 2020 are described, with a focus on novel functionalities accessible in the stable branch of the package or via interfaces with other packages. These developments span a wide range of topics in computational chemistry and are presented in thematic sections: electronic structure theory, electronic spectroscopy simulations, analytic gradients and molecular structure optimizations, ab initio molecular dynamics, and other new features. This report offers an overview of the chemical phenomena and processes OpenMolcas can address, while showing that OpenMolcas is an attractive platform for state-of-the-art atomistic computer simulations.
Collapse
Affiliation(s)
- Giovanni Li Manni
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Ignacio Fdez. Galván
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Ali Alavi
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
- Yusuf Hamied
Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Flavia Aleotti
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Francesco Aquilante
- Theory and
Simulation of Materials (THEOS) and National Centre for Computational
Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jochen Autschbach
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
| | - Davide Avagliano
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Alberto Baiardi
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Jie J. Bao
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Stefano Battaglia
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Letitia Birnoschi
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | - Alejandro Blanco-González
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - Sergey I. Bokarev
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
- Chemistry
Department, School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Ria Broer
- Theoretical
Chemistry, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Roberto Cacciari
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Paul B. Calio
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Rebecca K. Carlson
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Rafael Carvalho Couto
- Division
of Theoretical Chemistry and Biology, School of Engineering Sciences
in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Luis Cerdán
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
- Instituto
de Óptica (IO−CSIC), Consejo
Superior de Investigaciones Científicas, 28006, Madrid, Spain
| | - Liviu F. Chibotaru
- Department
of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Nicholas F. Chilton
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | | | - Irene Conti
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Sonia Coriani
- Department
of Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, 2800 Kongens Lyngby, Denmark
| | - Juliana Cuéllar-Zuquin
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Razan E. Daoud
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Nike Dattani
- HPQC Labs, Waterloo, N2T 2K9 Ontario Canada
- HPQC College, Waterloo, N2T 2K9 Ontario Canada
| | - Piero Decleva
- Istituto
Officina dei Materiali IOM-CNR and Dipartimento di Scienze Chimiche
e Farmaceutiche, Università degli
Studi di Trieste, I-34121 Trieste, Italy
| | - Coen de Graaf
- Department
of Physical and Inorganic Chemistry, Universitat
Rovira i Virgili, Tarragona 43007, Spain
- ICREA, Pg. Lluís
Companys 23, 08010 Barcelona, Spain
| | - Mickaël
G. Delcey
- Division
of Theoretical Chemistry and Biology, School of Engineering Sciences
in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Luca De Vico
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Werner Dobrautz
- Chalmers
University of Technology, Department of Chemistry
and Chemical Engineering, 41296 Gothenburg, Sweden
| | - Sijia S. Dong
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry and Chemical Biology, Department of Physics, and Department
of Chemical Engineering, Northeastern University, Boston, Massachusetts 02115, United States
| | - Rulin Feng
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
- Department
of Chemistry, Fudan University, Shanghai 200433, China
| | - Nicolas Ferré
- Institut
de Chimie Radicalaire (UMR-7273), Aix-Marseille
Univ, CNRS, ICR 13013 Marseille, France
| | | | - Laura Gagliardi
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Marco Garavelli
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Leticia González
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Yafu Guan
- State Key
Laboratory of Molecular Reaction Dynamics and Center for Theoretical
Computational Chemistry, Dalian Institute
of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
| | - Meiyuan Guo
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Matthew R. Hennefarth
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Matthew R. Hermes
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Chad E. Hoyer
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Miquel Huix-Rotllant
- Institut
de Chimie Radicalaire (UMR-7273), Aix-Marseille
Univ, CNRS, ICR 13013 Marseille, France
| | - Vishal Kumar Jaiswal
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Andy Kaiser
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Danil S. Kaliakin
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - Marjan Khamesian
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Daniel S. King
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Vladislav Kochetov
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Marek Krośnicki
- Institute
of Theoretical Physics and Astrophysics, Faculty of Mathematics, Physics
and Informatics, University of Gdańsk, ul Wita Stwosza 57, 80-952, Gdańsk, Poland
| | | | - Ernst D. Larsson
- Division
of Theoretical Chemistry, Chemical Centre, Lund University, P.O. Box 124, SE-22100, Lund, Sweden
| | - Susi Lehtola
- Molecular
Sciences Software Institute, Blacksburg, Virginia 24061, United States
- Department
of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 University of Helsinki, Finland
| | - Marie-Bernadette Lepetit
- Condensed
Matter Theory Group, Institut Néel, CNRS UPR 2940, 38042 Grenoble, France
- Theory
Group, Institut Laue Langevin, 38042 Grenoble, France
| | - Hans Lischka
- Department
of Chemistry and Biochemistry, Texas Tech
University, Lubbock, Texas 79409-1061, United States
| | - Pablo López Ríos
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Marcus Lundberg
- Department
of Chemistry − Ångström Laboratory, Uppsala University, SE-75120 Uppsala, Sweden
| | - Dongxia Ma
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Sebastian Mai
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Philipp Marquetand
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | | | - Francesco Montorsi
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Maximilian Mörchen
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Artur Nenov
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Vu Ha Anh Nguyen
- Department
of Chemistry, National University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Yoshio Nishimoto
- Graduate
School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Meagan S. Oakley
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Massimo Olivucci
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Markus Oppel
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Daniele Padula
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Riddhish Pandharkar
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Quan Manh Phung
- Department
of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
| | - Felix Plasser
- Department
of Chemistry, Loughborough University, Loughborough, LE11 3TU, U.K.
| | - Gerardo Raggi
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Quantum
Materials and Software LTD, 128 City Road, London, EC1V 2NX, United Kingdom
| | - Elisa Rebolini
- Scientific
Computing Group, Institut Laue Langevin, 38042 Grenoble, France
| | - Markus Reiher
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Ivan Rivalta
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Daniel Roca-Sanjuán
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Thies Romig
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Arta Anushirwan Safari
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Aitor Sánchez-Mansilla
- Department
of Physical and Inorganic Chemistry, Universitat
Rovira i Virgili, Tarragona 43007, Spain
| | - Andrew M. Sand
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry and Biochemistry, Butler University, Indianapolis, Indiana 46208, United States
| | - Igor Schapiro
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Thais R. Scott
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
- Department
of Chemistry, University of California, Irvine, California 92697, United States
| | - Javier Segarra-Martí
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Francesco Segatta
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Dumitru-Claudiu Sergentu
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
- Laboratory
RA-03, RECENT AIR, A. I. Cuza University of Iaşi, RA-03 Laboratory (RECENT AIR), Iaşi 700506, Romania
| | - Prachi Sharma
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Ron Shepard
- Chemical
Sciences and Engineering Division, Argonne
National Laboratory, Lemont, Illinois 60439, USA
| | - Yinan Shu
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Jakob K. Staab
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | - Tjerk P. Straatsma
- National
Center for Computational Sciences, Oak Ridge
National Laboratory, Oak Ridge, Tennessee 37831-6373, United States
- Department
of Chemistry and Biochemistry, University
of Alabama, Tuscaloosa, Alabama 35487-0336, United States
| | | | - Bruno Nunes Cabral Tenorio
- Department
of Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, 2800 Kongens Lyngby, Denmark
| | - Donald G. Truhlar
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Liviu Ungur
- Department
of Chemistry, National University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Morgane Vacher
- Nantes
Université, CNRS, CEISAM, UMR 6230, F-44000 Nantes, France
| | - Valera Veryazov
- Division
of Theoretical Chemistry, Chemical Centre, Lund University, P.O. Box 124, SE-22100, Lund, Sweden
| | - Torben Arne Voß
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Oskar Weser
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Dihua Wu
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Xuchun Yang
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - David Yarkony
- Department
of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Chen Zhou
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - J. Patrick Zobel
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Roland Lindh
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Uppsala
Center for Computational Chemistry (UC3), Uppsala University, PO Box 576, SE-751 23 Uppsala. Sweden
| |
Collapse
|
5
|
Rizo L, Janesko BG. Reimagining the Wave Function in Density Functional Theory: Exploring Strongly Correlated States in Pancake-Bonded Radical Dimers. J Phys Chem A 2023; 127:3684-3691. [PMID: 37053451 DOI: 10.1021/acs.jpca.2c08616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Pancake bonding between π-conjugated radicals challenges conventional electronic structure approximations, due to the presence of both dispersion (van der Waals) interactions and "strong" electron correlation. Here we use a reimagined wave function-in-density functional theory (DFT) approach to model pancake bonds. Our generalized self-interaction correction extends DFT's reference system of noninteracting electrons, by introducing electron-electron interactions within an active space. We show that a small variation on our previous derivation recovers a DFT-corrected complete active space method proposed by Pijeau and Hohenstein. Comparison of the two approaches shows that the latter provides reasonable dissociation curves for single bonds and pancake bonds, including excited states inaccessible to conventional linear response time-dependent DFT. The results motivate broader adoption of wavefunction-in-DFT approaches for modeling pancake bonds.
Collapse
Affiliation(s)
- Luis Rizo
- Intense Laser Physics Theory Unit, Illinois State University, Normal, Illinois 61790, United States
| | - Benjamin G Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, 2800 S. University Drive, Fort Worth, Texas 75039, United States
| |
Collapse
|
6
|
Hanscam R, Neuscamman E. Applying Generalized Variational Principles to Excited-State-Specific Complete Active Space Self-consistent Field Theory. J Chem Theory Comput 2022; 18:6608-6621. [PMID: 36215108 DOI: 10.1021/acs.jctc.2c00639] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We employ a generalized variational principle to improve the stability, reliability, and precision of fully excited-state-specific complete active space self-consistent field theory. Compared to previous approaches that similarly seek to tailor this ansatz's orbitals and configuration interaction expansion for an individual excited state, we find the present approach to be more resistant to root flipping and better at achieving tight convergence to an energy stationary point. Unlike state-averaging, this approach allows orbital shapes to be optimal for individual excited states, which is especially important for charge-transfer states and some doubly excited states. We demonstrate the convergence and state-targeting abilities of this method in LiH, ozone, and MgO, showing in the latter that it is capable of finding three excited-state energy stationary points that no previous method has been able to locate.
Collapse
Affiliation(s)
- Rebecca Hanscam
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Eric Neuscamman
- Department of Chemistry, University of California, Berkeley, California 94720, United States.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| |
Collapse
|
7
|
Abraham V, Mayhall NJ. Coupled Electron Pair-Type Approximations for Tensor Product State Wave Functions. J Chem Theory Comput 2022; 18:4856-4864. [PMID: 35878319 DOI: 10.1021/acs.jctc.2c00589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Size extensivity, defined as the correct scaling of energy with system size, is a desirable property for any many-body method. Traditional configuration interaction (CI) methods are not size extensive, hence the error increases as the system gets larger. Coupled electron pair approximation (CEPA) methods can be constructed as simple extensions of a truncated CI that ensures size extensivity. One of the major issues with the CEPA and its variants is that singularities arise in the amplitude equations when the system starts to be strongly correlated. In this work, we extend the traditional Slater determinant based coupled electron pair approaches like CEPA-0, averaged coupled-pair functional, and average quadratic coupled-cluster to a new formulation based on tensor product states (TPS). We show that a TPS basis can often be chosen such that it removes the singularities that commonly destroy the accuracy of CEPA based methods. A suitable TPS representation can be formed by partitioning the system into separate disjoint clusters and forming the final wave function as the tensor product of the many body states of these clusters. We demonstrate the application of these methods on simple bond breaking systems such as CH4 and F2 where determinant based CEPA methods fail. We further apply the TPS-CEPA approach to stillbene isomerization and few planar π-conjugated systems. Overall, the results show that the TPS-CEPA method can remove the singularities and provide improved numerical results compared to common electronic structure methods.
Collapse
Affiliation(s)
- Vibin Abraham
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Nicholas J Mayhall
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24060, United States
| |
Collapse
|
8
|
Shen Y, Yarkony DR. Unified Description of the Jahn-Teller Effect in Molecules with Only C s Symmetry: Cyclohexoxy in Its Full 48-Dimensional Internal Coordinates. J Phys Chem A 2021; 126:61-67. [PMID: 34965116 DOI: 10.1021/acs.jpca.1c09123] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The two lowest potential energy surfaces of cyclohexoxy which are coupled by conical intersections and the spin-orbit interaction are determined in the full 48-dimensional internal coordinate space using a feedforward neural network to fit a diabatic potential energy matrix. The electronic structure data are obtained at the multireference configuration interaction with single- and double-excitation level. Underlying parallels between these coupled surfaces and those of the alkoxy radicals methoxy and isopropoxy are established. Earlier work by Dillon and Yarkony is extended. While the parallels would have been challenging to appreciate using the concept of the Jahn-Teller active modes, they are readily seen in terms of two internal modes centered at the conical intersection: g the energy difference gradient vector and h the interstate coupling gradient vector. In other words, g and h vectors provide a unified description of the Jahn-Teller effect in molecules exhibiting C3v and quasi-C3v symmetries. A spectral simulation in the full 48-vibrational-internal coordinate space is reported. This spectrum is obtained using recently developed algorithms designed to increase the size of the systems that can be treated with a time-independent vibronic coupling approach.
Collapse
Affiliation(s)
- Yifan Shen
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - David R Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| |
Collapse
|
9
|
Matsika S. Electronic Structure Methods for the Description of Nonadiabatic Effects and Conical Intersections. Chem Rev 2021; 121:9407-9449. [PMID: 34156838 DOI: 10.1021/acs.chemrev.1c00074] [Citation(s) in RCA: 61] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Nonadiabatic effects are ubiquitous in photophysics and photochemistry, and therefore, many theoretical developments have been made to properly describe them. Conical intersections are central in nonadiabatic processes, as they promote efficient and ultrafast nonadiabatic transitions between electronic states. A proper theoretical description requires developments in electronic structure and specifically in methods that describe conical intersections between states and nonadiabatic coupling terms. This review focuses on the electronic structure aspects of nonadiabatic processes. We discuss the requirements of electronic structure methods to describe conical intersections and nonadiabatic couplings, how the most common excited state methods perform in describing these effects, and what the recent developments are in expanding the methodology and implementing nonadiabatic couplings.
Collapse
Affiliation(s)
- Spiridoula Matsika
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States
| |
Collapse
|
10
|
Parravicini V, Jagau TC. Embedded equation-of-motion coupled-cluster theory for electronic excitation, ionisation, electron attachment, and electronic resonances. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1943029] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Valentina Parravicini
- Department of Chemistry, KU Leuven, Leuven, BelgiumThis article is dedicated to Professor John Stanton on the occasion of his 60th birthday
| | - Thomas-C. Jagau
- Department of Chemistry, KU Leuven, Leuven, BelgiumThis article is dedicated to Professor John Stanton on the occasion of his 60th birthday
| |
Collapse
|
11
|
Rankine CD. Ultrafast excited-state dynamics of promising nucleobase ancestor 2,4,6-triaminopyrimidine. Phys Chem Chem Phys 2021; 23:4007-4017. [PMID: 33554987 DOI: 10.1039/d0cp05609j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The ultrafast excited-state dynamics of 2,4,6-triaminopyrimidine - thought to be a promising candidate for a proto-RNA nucleobase - have been investigated via static multireference quantum-chemical calculations and mixed-quantum-classical/trajectory surface-hopping dynamics with a focus on the lowest-lying electronic states of the singlet manifold and with a view towards understanding the UV(C)/UV(B) photostability of the molecule. Ultrafast internal conversion channels have been identified that connect the lowest-lying ππ* electronically-excited state of 2,4,6-triaminopyrimidine with the ground electronic state, and non-radiative decay has been observed to take place on the picosecond timescale via a ππ* out-of-plane NH2 ("oop-NH2") minimum-energy crossing point. The short excited-state lifetime is competitive with the excited-state lifetimes of the canonical pyrimidine nucleobases, affirming the promise of 2,4,6-triaminopyrimidine as an ancestor. Evidence for energy-dependent excited-state dynamics is presented, and the open question of intersystem crossing is discussed speculatively.
Collapse
Affiliation(s)
- Conor D Rankine
- School of Natural and Environmental Sciences, Newcastle University, Newcastle-upon-Tyne, NE1 7RU, UK.
| |
Collapse
|
12
|
Shen Y, Yarkony DR. Compact Bases for Vibronic Coupling in Spectral Simulations: The Photoelectron Spectrum of Cyclopentoxide in the Full 39 Internal Modes. J Phys Chem Lett 2020; 11:7245-7252. [PMID: 32787311 DOI: 10.1021/acs.jpclett.0c02199] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
We report an algorithm to automatically generate compact multimode vibrational bases for the Köppel-Domcke-Cederbaum (KDC) vibronic coupling wave function used in spectral simulations of moderate-sized molecules. As a full quantum method, the size of the vibronic expansion grows exponentially with respect to the number of vibrational modes, necessitating compact bases for moderate-sized systems. The problem of generating such a basis consists of two parts: one is the choice of vibrational normal modes, and the other is the number of phonons allowed in each mode. A previously developed final-state-biased technique addresses the former part, and this work focuses on the latter part: proposing an algorithm for generating an optimal phonon distribution. By virtue of this phonon distribution, compact and affordable bases can be automatically generated for systems with on the order of 15 atoms. Our algorithm is applied to determine the nonadiabatic photoelectron spectrum of cyclopentoxide in the full 39 internal modes.
Collapse
Affiliation(s)
- Yifan Shen
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - David R Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| |
Collapse
|
13
|
Shen Y, Yarkony DR. Construction of Quasi-diabatic Hamiltonians That Accurately Represent ab Initio Determined Adiabatic Electronic States Coupled by Conical Intersections for Systems on the Order of 15 Atoms. Application to Cyclopentoxide Photoelectron Detachment in the Full 39 Degrees of Freedom. J Phys Chem A 2020; 124:4539-4548. [PMID: 32374600 DOI: 10.1021/acs.jpca.0c02763] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present, for systems of moderate dimension, a fitting framework to construct quasi-diabatic Hamiltonians that accurately represent ab initio adiabatic electronic structure data including the effects of conical intersections. The framework introduced here minimizes the difference between the fit prediction and the ab initio data obtained in the adiabatic representation, which is singular at a conical intersection seam. We define a general and flexible merit function to allow arbitrary representations and propose a representation to measure the fit-ab initio difference at geometries near electronic degeneracies. A fit Hamiltonian may behave poorly in insufficiently sampled regions, in which case a machine learning theory analysis of the fit representation suggests a regularization to address the deficiency. Our fitting framework including the regularization is used to construct the full 39-dimensional coupled diabatic potential energy surfaces for cyclopentoxy relevant to cyclopentoxide photoelectron detachment.
Collapse
Affiliation(s)
- Yifan Shen
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - David R Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| |
Collapse
|
14
|
Chakraborty P, Liu Y, Weinacht T, Matsika S. Excited state dynamics of cis,cis-1,3-cyclooctadiene: Non-adiabatic trajectory surface hopping. J Chem Phys 2020; 152:174302. [PMID: 32384830 DOI: 10.1063/5.0005558] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have performed trajectory surface hopping dynamics for cis,cis-1,3-cyclooctadiene to investigate the photochemical pathways involved after being excited to the S1 state. Our calculations reveal ultrafast decay to the ground state, facilitated by conical intersections involving distortions around the double bonds. The main distortions are localized on one double bond, involving twisting and pyramidalization of one of the carbons of that double bond (similar to ethylene), while a limited number of trajectories decay via delocalized (non-local) twisting of both double bonds. The interplay between local and non-local distortions is important in our understanding of photoisomerization in conjugated systems. The calculations show that a broad range of the conical intersection seam space is accessed during the non-adiabatic events. Several products formed on the ground state have also been observed.
Collapse
Affiliation(s)
- Pratip Chakraborty
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - Yusong Liu
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - Thomas Weinacht
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - Spiridoula Matsika
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| |
Collapse
|
15
|
Wang J, Durbeej B. How accurate are TD‐DFT excited‐state geometries compared to DFT ground‐state geometries? J Comput Chem 2020; 41:1718-1729. [DOI: 10.1002/jcc.26213] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 04/07/2020] [Accepted: 04/09/2020] [Indexed: 01/18/2023]
Affiliation(s)
- Jun Wang
- Division of Theoretical Chemistry, IFMLinköping University Linköping Sweden
- Institut de Química Computacional i Catàlisi, Facultat de CiènciesUniversitat de Girona Girona Spain
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFMLinköping University Linköping Sweden
| |
Collapse
|
16
|
Park JW, Al-Saadon R, MacLeod MK, Shiozaki T, Vlaisavljevich B. Multireference Electron Correlation Methods: Journeys along Potential Energy Surfaces. Chem Rev 2020; 120:5878-5909. [PMID: 32239929 DOI: 10.1021/acs.chemrev.9b00496] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Multireference electron correlation methods describe static and dynamical electron correlation in a balanced way and, therefore, can yield accurate and predictive results even when single-reference methods or multiconfigurational self-consistent field theory fails. One of their most prominent applications in quantum chemistry is the exploration of potential energy surfaces. This includes the optimization of molecular geometries, such as equilibrium geometries and conical intersections and on-the-fly photodynamics simulations, both of which depend heavily on the ability of the method to properly explore the potential energy surface. Because such applications require nuclear gradients and derivative couplings, the availability of analytical nuclear gradients greatly enhances the scope of quantum chemical methods. This review focuses on the developments and advances made in the past two decades. A detailed account of the analytical nuclear gradient and derivative coupling theories is presented. Emphasis is given to the software infrastructure that allows one to make use of these methods. Notable applications of multireference electron correlation methods to chemistry, including geometry optimizations and on-the-fly dynamics, are summarized at the end followed by a discussion of future prospects.
Collapse
Affiliation(s)
- Jae Woo Park
- Department of Chemistry, Chungbuk National University, Chungdae-ro 1, Cheongju 28644, Korea
| | - Rachael Al-Saadon
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Matthew K MacLeod
- Workday, 4900 Pearl Circle East, Suite 100, Boulder, Colorado 80301, United States
| | - Toru Shiozaki
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Quantum Simulation Technologies, Inc., 625 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States
| | - Bess Vlaisavljevich
- Department of Chemistry, University of South Dakota, 414 East Clark Street, Vermillion, South Dakota 57069, United States
| |
Collapse
|
17
|
Hydrogen-bonded contact ion pair in gaseous chloroethane: a multi-reference configuration interaction with singles and doubles (MR-CISD) study including extensivity corrections. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2561-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
18
|
Zhu H, Gao C, Filatov M, Zou W. Mössbauer isomer shifts and effective contact densities obtained by the exact two-component (X2C) relativistic method and its local variants. Phys Chem Chem Phys 2020; 22:26776-26786. [DOI: 10.1039/d0cp04549g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A standalone program to calculate scalar relativistic effective contact densities.
Collapse
Affiliation(s)
- Hong Zhu
- Institute of Modern Physics
- Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers
- Xi'an
- P. R. China
| | - Chun Gao
- Institute of Modern Physics
- Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers
- Xi'an
- P. R. China
| | - Michael Filatov
- Department of Chemistry
- Kyungpook National University
- Daegu 702-701
- South Korea
| | - Wenli Zou
- Institute of Modern Physics
- Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers
- Xi'an
- P. R. China
| |
Collapse
|
19
|
Belcher LT, Kedziora GS, Weeks DE. Analytic non-adiabatic derivative coupling terms for spin-orbit MRCI wavefunctions. I. Formalism. J Chem Phys 2019; 151:234104. [PMID: 31864254 DOI: 10.1063/1.5126800] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Analytic gradients of electronic eigenvalues require one calculation per nuclear geometry, compared to at least 3n + 1 calculations for finite difference methods, where n is the number of nuclei. Analytic nonadiabatic derivative coupling terms (DCTs), which are calculated in a similar fashion, are used to remove nondiagonal contributions to the kinetic energy operator, leading to more accurate nuclear dynamics calculations than those that employ the Born-Oppenheimer approximation, i.e., that assume off-diagonal contributions are zero. The current methods and underpinnings for calculating both of these quantities, gradients and DCTs, for the State-Averaged MultiReference Configuration Interaction with Singles and Doubles (MRCI-SD) wavefunctions in COLUMBUS are reviewed. Before this work, these methods were not available for wavefunctions of a relativistic MRCI-SD Hamiltonian. Calculation of these terms is critical in successfully modeling the dynamics of systems that depend on transitions between potential energy surfaces split by the spin-orbit operator, such as diode-pumped alkali lasers. A formalism for calculating the transition density matrices and analytic derivative coupling terms for such systems is presented.
Collapse
Affiliation(s)
- Lachlan T Belcher
- Laser and Optics Research Center, Department of Physics, US Air Force Academy, Colorado Springs, Colorado 80840, USA
| | - Gary S Kedziora
- HPCMP PETTT/SAIC, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, USA
| | - David E Weeks
- Department of Engineering Physics, Air Force Institute of Technology, Wright-Patterson AFB, Ohio 45433, USA
| |
Collapse
|
20
|
Ryazantsev MN, Nikolaev DM, Struts AV, Brown MF. Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins. J Membr Biol 2019; 252:425-449. [PMID: 31570961 DOI: 10.1007/s00232-019-00095-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Accepted: 09/10/2019] [Indexed: 12/20/2022]
Abstract
Computational chemistry provides versatile methods for studying the properties and functioning of biological systems at different levels of precision and at different time scales. The aim of this article is to review the computational methodologies that are applicable to rhodopsins as archetypes for photoactive membrane proteins that are of great importance both in nature and in modern technologies. For each class of computational techniques, from methods that use quantum mechanics for simulating rhodopsin photophysics to less-accurate coarse-grained methodologies used for long-scale protein dynamics, we consider possible applications and the main directions for improvement.
Collapse
Affiliation(s)
- Mikhail N Ryazantsev
- Institute of Chemistry, Saint Petersburg State University, 26 Universitetskii pr, Saint Petersburg, Russia, 198504
| | - Dmitrii M Nikolaev
- Saint-Petersburg Academic University - Nanotechnology Research and Education Centre RAS, Saint Petersburg, Russia, 194021
| | - Andrey V Struts
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, 85721, USA.,Laboratory of Biomolecular NMR, Saint Petersburg State University, Saint Petersburg, Russia, 199034
| | - Michael F Brown
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, 85721, USA. .,Department of Physics, University of Arizona, Tucson, AZ, 85721, USA.
| |
Collapse
|
21
|
Fang C, Durbeej B. Calculation of Free-Energy Barriers with TD-DFT: A Case Study on Excited-State Proton Transfer in Indigo. J Phys Chem A 2019; 123:8485-8495. [DOI: 10.1021/acs.jpca.9b05163] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Changfeng Fang
- Center for Optics Research and Engineering (CORE), Shandong University, Qingdao 266237, China
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83 Linköping, Sweden
| |
Collapse
|
22
|
Shepard R, Brozell SR. The all configuration mean energy multiconfiguration self-consistent-field method. I. Equal configuration weights. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1635275] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ron Shepard
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| | - Scott R. Brozell
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, USA
| |
Collapse
|
23
|
Pereira Rodrigues G, Lopes de Lima TM, de Andrade RB, Ventura E, do Monte SA, Barbatti M. Photoinduced Formation of H-Bonded Ion Pair in HCFC-133a. J Phys Chem A 2019; 123:1953-1961. [DOI: 10.1021/acs.jpca.8b12482] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gessenildo Pereira Rodrigues
- Universidade Federal da Paraíba, 58059-900, João Pessoa-PB, Brazil
- Faculdade Rebouças, 58406-040, Campina Grande-PB, Brazil
| | | | | | - Elizete Ventura
- Universidade Federal da Paraíba, 58059-900, João Pessoa-PB, Brazil
| | | | | |
Collapse
|
24
|
Plasser F, Gómez S, Menger MFSJ, Mai S, González L. Highly efficient surface hopping dynamics using a linear vibronic coupling model. Phys Chem Chem Phys 2018; 21:57-69. [PMID: 30306987 DOI: 10.1039/c8cp05662e] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
We report an implementation of the linear vibronic coupling (LVC) model within the surface hopping dynamics approach and present utilities for parameterizing this model in a blackbox fashion. This results in an extremely efficient method to obtain qualitative and even semi-quantitative information about the photodynamical behavior of a molecule, and provides a new route toward benchmarking the results of surface hopping computations. The merits and applicability of the method are demonstrated in a number of applications. First, the method is applied to the SO2 molecule showing that it is possible to compute its absorption spectrum beyond the Condon approximation, and that all the main features and timescales of previous on-the-fly dynamics simulations of intersystem crossing are reproduced while reducing the computational effort by three orders of magnitude. The dynamics results are benchmarked against exact wavepacket propagations on the same LVC potentials and against a variation of the electronic structure level. Four additional test cases are presented to exemplify the broader applicability of the model. The photodynamics of the isomeric adenine and 2-aminopurine molecules are studied and it is shown that the LVC model correctly predicts ultrafast decay in the former and an extended excited-state lifetime in the latter. Futhermore, the method correctly predicts ultrafast intersystem crossing in the modified nucleobase 2-thiocytosine and its absence in 5-azacytosine while it fails to describe the ultrafast internal conversion to the ground state in the latter.
Collapse
Affiliation(s)
- Felix Plasser
- Department of Chemistry, Loughborough University, Loughborough, LE11 3TU, UK.
| | | | | | | | | |
Collapse
|
25
|
Filatov M, Min SK, Kim KS. Non-adiabatic dynamics of ring opening in cyclohexa-1,3-diene described by an ensemble density-functional theory method. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1519200] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Michael Filatov
- Department of Chemistry, School of Natural Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Korea
| | - Seung Kyu Min
- Department of Chemistry, School of Natural Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Korea
| | - Kwang S. Kim
- Department of Chemistry, School of Natural Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Korea
| |
Collapse
|
26
|
de Medeiros VC, de Andrade RB, P. Rodrigues G, Bauerfeldt GF, Ventura E, Barbatti M, do Monte SA. Photochemistry of CF3Cl: Quenching of Charged Fragments Is Caused by Nonadiabatic Effects. J Chem Theory Comput 2018; 14:4844-4855. [DOI: 10.1021/acs.jctc.8b00457] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Vanessa C. de Medeiros
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, Paraíba 58.059-900, Brazil
| | - Railton B. de Andrade
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, Paraíba 58.059-900, Brazil
| | - Gessenildo P. Rodrigues
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, Paraíba 58.059-900, Brazil
| | - Glauco F. Bauerfeldt
- Departamento de Química, Instituto de Ciências Exatas, UFRRJ, Pavilhão Roberto Alvahydo (PQ), sala 44. km 7, Rodovia Br 465, Seropédica, Rio de Janeiro 23890-000, Brazil
| | - Elizete Ventura
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, Paraíba 58.059-900, Brazil
| | | | - Silmar A. do Monte
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, Paraíba 58.059-900, Brazil
| |
Collapse
|
27
|
Lischka H, Nachtigallová D, Aquino AJA, Szalay PG, Plasser F, Machado FBC, Barbatti M. Multireference Approaches for Excited States of Molecules. Chem Rev 2018; 118:7293-7361. [DOI: 10.1021/acs.chemrev.8b00244] [Citation(s) in RCA: 197] [Impact Index Per Article: 32.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Hans Lischka
- School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, P.R. China
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Dana Nachtigallová
- Institute of Organic Chemistry and Biochemistry v.v.i., The Czech Academy of Sciences, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
- Regional Centre of Advanced Technologies and Materials, Palacký University, 78371 Olomouc, Czech Republic
| | - Adélia J. A. Aquino
- School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, P.R. China
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
- Institute for Soil Research, University of Natural Resources and Life Sciences Vienna, Peter-Jordan-Strasse 82, A-1190 Vienna, Austria
| | - Péter G. Szalay
- ELTE Eötvös Loránd University, Laboratory of Theoretical Chemistry, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary
| | - Felix Plasser
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
- Department of Chemistry, Loughborough University, Leicestershire LE11 3TU, United Kingdom
| | - Francisco B. C. Machado
- Departamento de Química, Instituto Tecnológico de Aeronáutica, São José dos Campos 12228-900, São Paulo, Brazil
| | | |
Collapse
|
28
|
Crespo-Otero R, Barbatti M. Recent Advances and Perspectives on Nonadiabatic Mixed Quantum–Classical Dynamics. Chem Rev 2018; 118:7026-7068. [DOI: 10.1021/acs.chemrev.7b00577] [Citation(s) in RCA: 301] [Impact Index Per Article: 50.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
| | | |
Collapse
|
29
|
Hu H, Zhang B, Luxon A, Scott T, Wang B, Parish CA. An Extended Multireference Study of the Singlet and Triplet States of the 9,10-didehydroanthracene Diradical. J Phys Chem A 2018; 122:3688-3696. [DOI: 10.1021/acs.jpca.8b01233] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hui Hu
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, United States
| | - Boyi Zhang
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, United States
| | - Adam Luxon
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, United States
| | - Thais Scott
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, United States
| | - Baoshan Wang
- College of Chemistry and Molecular Sciences, Wuhan University, Wuhan, Hubei Province 430072, P.R. China
| | - Carol A. Parish
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173, United States
| |
Collapse
|
30
|
Szabla R, Góra RW, Šponer J. Ultrafast excited-state dynamics of isocytosine. Phys Chem Chem Phys 2018; 18:20208-18. [PMID: 27346684 DOI: 10.1039/c6cp01391k] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The alternative nucleobase isocytosine has long been considered as a plausible component of hypothetical primordial informational polymers. To examine this hypothesis we investigated the excited-state dynamics of the two most abundant forms of isocytosine in the gas phase (keto and enol). Our surface-hopping nonadiabatic molecular dynamics simulations employing the algebraic diagrammatic construction to the second order [ADC(2)] method for the electronic structure calculations suggest that both tautomers undergo efficient radiationless deactivation to the electronic ground state with time constants which amount to τketo = 182 fs and τenol = 533 fs. The dominant photorelaxation pathways correspond to ring-puckering (ππ* surface) and C[double bond, length as m-dash]O stretching/N-H tilting (nπ* surface) for the enol and keto forms respectively. Based on these findings, we infer that isocytosine is a relatively photostable compound in the gas phase and in these terms resembles biologically relevant nucleobases. The estimated S1 [radiolysis arrow - arrow with voltage kink] T1 intersystem crossing rate constant of 8.02 × 10(10) s(-1) suggests that triplet states might also play an important role in the overall excited-state dynamics of the keto tautomer. The reliability of ADC(2)-based surface-hopping molecular dynamics simulations was tested against multireference quantum-chemical calculations and the potential limitations of the employed ADC(2) approach are briefly discussed.
Collapse
Affiliation(s)
- Rafał Szabla
- Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 61265, Brno, Czech Republic.
| | - Robert W Góra
- Department of Physical and Quantum Chemistry, Faculty of Chemistry, Wrocław University of Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Jiří Šponer
- Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 61265, Brno, Czech Republic. and CEITEC-Central European Institute of Technology, Masaryk University, Campus Bohunice, Kamenice 5, CZ-62500 Brno, Czech Republic
| |
Collapse
|
31
|
Liu F, Du L, Lan Z, Gao J. Hydrogen bond dynamics governs the effective photoprotection mechanism of plant phenolic sunscreens. Photochem Photobiol Sci 2017; 16:211-219. [PMID: 27982141 DOI: 10.1039/c6pp00367b] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Sinapic acid derivatives are important sunscreen species in natural plants, which could provide protection from solar UV radiation. Using a combination of ultrafast excited state dynamics, together with classical molecular dynamics studies, we demonstrate that there is direct coupling of hydrogen bond motion with excited state photoprotection dynamics as part of the basic mechanism in solution. Beyond the intra-molecular degree of freedom, the inter-molecular motions on all timescales are potentially important for the photochemical or photophysical events, ranging from the ultrafast hydrogen bond motion to solvent rearrangements. This provides not only an enhanced understanding of the anomalous experimental spectroscopic results, but also the key idea in the development of sunscreen agents with improved photo-chemical properties. We suggest that the hydrogen bond dynamics coupled excited state photoprotection mechanism may also be possible in a broad range of bio-related molecules in the condensed phase.
Collapse
Affiliation(s)
- Fang Liu
- Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan, 430070, P.R. China.
| | - Likai Du
- Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan, 430070, P.R. China.
| | - Zhenggang Lan
- Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, P. R. China
| | - Jun Gao
- Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan, 430070, P.R. China.
| |
Collapse
|
32
|
Luo C, Dong W, Gu Y. Theory-guided access to efficient photodegradation of the simplest perfluorocarboxylic acid: Trifluoroacetic acid. CHEMOSPHERE 2017; 181:26-36. [PMID: 28419898 DOI: 10.1016/j.chemosphere.2017.03.118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Revised: 03/18/2017] [Accepted: 03/27/2017] [Indexed: 06/07/2023]
Abstract
The photodegradation approaches of perfluorocarboxylic acids have attracted considerable attention and have been developed extensively. However, the reaction channels along which the perfluorocarboxylic acid molecules dissociate remain to be deciphered by means of the quantum chemical method at the electronically excited state level of theory until now. Here we report the photodissociation mechanism of the simplest perfluorocarboxylic acid, trifluoroacetic acid, using the complete active space self-consistent field (CASSCF) and the multi-configurational second-order perturbation (CASPT2) methods. The CC and CO α bond fission channels were both taken into account. Based on the constructed potential energy surfaces, it is concluded that the CC α bond fission, which would probably account for further degradations and mineralizations, may mainly take place in the triplet manifolds via intersystem crossing from the S1 state. Thus, taking the computational results of the simple member of perfluorocarboxylic acids as a rational clue, strategies to enhance intersystem crossing process efficiencies of the photodegradation of perfluorocarboxylic acids can be developed.
Collapse
Affiliation(s)
- Cheng Luo
- Harbin Institute of Technology Shenzhen Graduate School, Shenzhen Key Laboratory of Water Resource Utilization and Environmental Pollution Control, Shenzhen 518055, China
| | - Wenyi Dong
- Harbin Institute of Technology Shenzhen Graduate School, Shenzhen Key Laboratory of Water Resource Utilization and Environmental Pollution Control, Shenzhen 518055, China.
| | - Yurong Gu
- Harbin Institute of Technology Shenzhen Graduate School, Shenzhen Key Laboratory of Water Resource Utilization and Environmental Pollution Control, Shenzhen 518055, China
| |
Collapse
|
33
|
Carlos Borin A, Mai S, Marquetand P, González L. Ab initio molecular dynamics relaxation and intersystem crossing mechanisms of 5-azacytosine. Phys Chem Chem Phys 2017; 19:5888-5894. [DOI: 10.1039/c6cp07919a] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Nonadiabatic SHARC dynamics simulations reveal the molecular deformations involved in the photodeactivation pathways of 5-azacytosine.
Collapse
Affiliation(s)
- Antonio Carlos Borin
- Department of Fundamental Chemistry
- Institute of Chemistry
- University of São Paulo
- NAP-PhotoTech the USP Consortium for Photochemical Technology
- São Paulo
| | - Sebastian Mai
- Institute of Theoretical Chemistry
- Faculty of Chemistry
- University of Vienna
- 1090 Vienna
- Austria
| | - Philipp Marquetand
- Institute of Theoretical Chemistry
- Faculty of Chemistry
- University of Vienna
- 1090 Vienna
- Austria
| | - Leticia González
- Institute of Theoretical Chemistry
- Faculty of Chemistry
- University of Vienna
- 1090 Vienna
- Austria
| |
Collapse
|
34
|
Oruganti B, Fang C, Durbeej B. Assessment of a composite CC2/DFT procedure for calculating 0–0 excitation energies of organic molecules. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1235736] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Baswanth Oruganti
- Division of Theoretical Chemistry, IFM, Linköping University, Linköping, Sweden
| | - Changfeng Fang
- Division of Theoretical Chemistry, IFM, Linköping University, Linköping, Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFM, Linköping University, Linköping, Sweden
| |
Collapse
|
35
|
Du L, Lan Z. An On-the-Fly Surface-Hopping Program JADE for Nonadiabatic Molecular Dynamics of Polyatomic Systems: Implementation and Applications. J Chem Theory Comput 2016; 11:1360-74. [PMID: 26574348 DOI: 10.1021/ct501106d] [Citation(s) in RCA: 89] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Nonadiabatic dynamics simulations have rapidly become an indispensable tool for understanding ultrafast photochemical processes in complex systems. Here, we present our recently developed on-the-fly nonadiabatic dynamics package, JADE, which allows researchers to perform nonadiabatic excited-state dynamics simulations of polyatomic systems at an all-atomic level. The nonadiabatic dynamics is based on Tully's surface-hopping approach. Currently, several electronic structure methods (CIS, TDHF, TDDFT(RPA/TDA), and ADC(2)) are supported, especially TDDFT, aiming at performing nonadiabatic dynamics on medium- to large-sized molecules. The JADE package has been interfaced with several quantum chemistry codes, including Turbomole, Gaussian, and Gamess (US). To consider environmental effects, the Langevin dynamics was introduced as an easy-to-use scheme into the standard surface-hopping dynamics. The JADE package is mainly written in Fortran for greater numerical performance and Python for flexible interface construction, with the intent of providing open-source, easy-to-use, well-modularized, and intuitive software in the field of simulations of photochemical and photophysical processes. To illustrate the possible applications of the JADE package, we present a few applications of excited-state dynamics for various polyatomic systems, such as the methaniminium cation, fullerene (C20), p-dimethylaminobenzonitrile (DMABN) and its primary amino derivative aminobenzonitrile (ABN), and 10-hydroxybenzo[h]quinoline (10-HBQ).
Collapse
Affiliation(s)
- Likai Du
- Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences , Qingdao, 266101 Shandong, People's Republic of China.,University of Chinese Academy of Sciences , Beijing 100049, People's Republic of China.,The Qingdao Key Lab of Solar Energy Utilization and Energy Storage Technology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences , Qingdao, 266101 Shandong, People's Republic of China
| | - Zhenggang Lan
- Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences , Qingdao, 266101 Shandong, People's Republic of China.,University of Chinese Academy of Sciences , Beijing 100049, People's Republic of China.,The Qingdao Key Lab of Solar Energy Utilization and Energy Storage Technology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences , Qingdao, 266101 Shandong, People's Republic of China
| |
Collapse
|
36
|
Fdez. Galván I, Delcey MG, Pedersen TB, Aquilante F, Lindh R. Analytical State-Average Complete-Active-Space Self-Consistent Field Nonadiabatic Coupling Vectors: Implementation with Density-Fitted Two-Electron Integrals and Application to Conical Intersections. J Chem Theory Comput 2016; 12:3636-53. [DOI: 10.1021/acs.jctc.6b00384] [Citation(s) in RCA: 82] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | - Mickaël G. Delcey
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Kenneth
S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Thomas Bondo Pedersen
- Centre
for Theoretical and Computational Chemistry, Department of Chemistry, University of Oslo, P.O.
Box 1033 Blindern, 0315 Oslo, Norway
| | - Francesco Aquilante
- Dipartimento
di Chimica “G. Ciamician”, Università di Bologna, Via F. Selmi 2, IT-40126 Bologna, Italy
| | | |
Collapse
|
37
|
Guo X, Yuan H, Zhu Q, An B, Zhang J. Ab initioinsights on photophysics of 9-methylhypoxanthine. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1164348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
38
|
Guo X, Yuan H, An B, Zhu Q, Zhang J. Ultrafast excited-state deactivation of 9-methylhypoxanthine in aqueous solution: A QM/MM MD study. J Chem Phys 2016; 144:154306. [DOI: 10.1063/1.4946103] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Xugeng Guo
- Institute of Environmental and Analytical Sciences, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, People’s Republic of China
| | - Huijuan Yuan
- Institute of Environmental and Analytical Sciences, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, People’s Republic of China
| | - Beibei An
- Institute of Environmental and Analytical Sciences, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, People’s Republic of China
| | - Qiuling Zhu
- Institute of Environmental and Analytical Sciences, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, People’s Republic of China
| | - Jinglai Zhang
- Institute of Environmental and Analytical Sciences, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, People’s Republic of China
| |
Collapse
|
39
|
Rankine CD, Nunes JPF, Robinson MS, Lane PD, Wann DA. A theoretical investigation of internal conversion in 1,2-dithiane using non-adiabatic multiconfigurational molecular dynamics. Phys Chem Chem Phys 2016; 18:27170-27174. [PMID: 27722509 DOI: 10.1039/c6cp05518d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Non-adiabatic multireference molecular dynamics simulations have revealed a motion in 1,2-dithiane that activates on absorption of light in the mid-UV and expedites the S1/S0 internal conversion process.
Collapse
Affiliation(s)
- C. D. Rankine
- Department of Chemistry
- University of York
- Heslington
- UK
| | | | | | - P. D. Lane
- Department of Chemistry
- University of York
- Heslington
- UK
| | - D. A. Wann
- Department of Chemistry
- University of York
- Heslington
- UK
| |
Collapse
|
40
|
Du L, Lan Z. Ultrafast structural flattening motion in photoinduced excited state dynamics of a bis(diimine) copper(i) complex. Phys Chem Chem Phys 2016; 18:7641-50. [DOI: 10.1039/c5cp06861d] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The intriguing ultrafast photoinduced structural change dynamics of a prototypical Cu(i) complex, namely, [Cu(dmp)2]+ (dmp = 2,9-dimethyl-1,10-phenanthroline), is investigated based on the theoretical analysis of static and dynamical calculations at the all-atomic level.
Collapse
Affiliation(s)
- Likai Du
- Key Laboratory of Biobased Materials
- Qingdao Institute of Bioenergy and Bioprocess Technology
- Chinese Academy of Sciences
- Qingdao
- People's Republic of China
| | - Zhenggang Lan
- Key Laboratory of Biobased Materials
- Qingdao Institute of Bioenergy and Bioprocess Technology
- Chinese Academy of Sciences
- Qingdao
- People's Republic of China
| |
Collapse
|
41
|
de Medeiros VC, de Andrade RB, Leitão EFV, Ventura E, Bauerfeldt GF, Barbatti M, do Monte SA. Photochemistry of CH3Cl: Dissociation and CH···Cl Hydrogen Bond Formation. J Am Chem Soc 2015; 138:272-80. [PMID: 26653216 DOI: 10.1021/jacs.5b10573] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
State-of-the-art electronic structure calculations (MR-CISD) are used to map five different dissociation channels of CH3Cl along the C-Cl coordinate: (i) CH3(X̃(2)A2″) + Cl((2)P), (ii) CH3(3s(2)A1') + Cl((2)P), (iii) CH3(+)((1)A1') + Cl(-)((1)S), (iv) CH3(3p(2)E') + Cl((2)P), and (v) CH3(3p(2)A2″) + Cl((2)P). By the first time these latter four dissociation channels, accessible upon VUV absorption, are described. The corresponding dissociation limits, obtained at the MR-CISD+Q level, are 3.70, 9.50, 10.08, 10.76, and 11.01 eV. The first channel can be accessed through nσ* and n3s states, while the second channel can be accessed through n(e)3s, n(e)3p(σ), and σ3s states. The third channel, corresponding to the CH3(+) + Cl(-) ion-pair, is accessed through n(e)3p(e) states. The fourth is accessed through n(e)3p(e), n(e)3p(σ), and σ3p(σ), while the fifth through σ3p(e) and σ(CH)σ* states. The population of the diverse channels is controlled by two geometrical spots, where intersections between multiple states allow a cascade of nonadiabatic events. The ion-pair dissociation occurs through formation of CH3(+)···Cl(-)and H2CH(+)···Cl(-) intermediate complexes bound by 3.69 and 4.65 eV. The enhanced stability of the H2CH(+)···Cl(-) complex is due to a CH···Cl hydrogen bond. A time-resolved spectroscopic setup is proposed to detect those complexes.
Collapse
Affiliation(s)
- Vanessa C de Medeiros
- Departamento de Química, CCEN, Universidade Federal da Paraíba , João Pessoa, PB 58059-900, Brazil
| | - Railton B de Andrade
- Departamento de Química, CCEN, Universidade Federal da Paraíba , João Pessoa, PB 58059-900, Brazil
| | - Ezequiel F V Leitão
- Departamento de Química, CCEN, Universidade Federal da Paraíba , João Pessoa, PB 58059-900, Brazil
| | - Elizete Ventura
- Departamento de Química, CCEN, Universidade Federal da Paraíba , João Pessoa, PB 58059-900, Brazil
| | - Glauco F Bauerfeldt
- Departamento de Química, Instituto de Ciências Exatas, UFRRJ, Pavilhão Roberto Alvahydo (PQ) , sala 44. km 7, Rodovia Br 465, Seropédica, RJ 23890-000, Brazil
| | - Mario Barbatti
- Aix Marseille Université , CNRS, ICR UMR7273, 13397 Marseille, France
| | - Silmar A do Monte
- Departamento de Química, CCEN, Universidade Federal da Paraíba , João Pessoa, PB 58059-900, Brazil
| |
Collapse
|
42
|
de Andrade RB, Vieira Leitão EF, de Souza MAF, Ventura E, do Monte SA. Effect of methylation on relative energies of tautomers and on the intramolecular proton transfer barriers of protonated nitrosamine: A MR-CISD study. J Comput Chem 2015; 36:2027-36. [PMID: 26171999 DOI: 10.1002/jcc.24007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2015] [Accepted: 06/22/2015] [Indexed: 01/09/2023]
Abstract
MR-CISD, MR-CISD+Q, and MR-AQCC calculations have been performed on the minima and transition states (corresponding to intramolecular proton transfer between the protonation sites) of the ground state of protonated nitrosamine and N,N-dimethylnitrosamine. Our highest level results (MR-AQCC/cc-pVTZ) for the smaller system indicate that protonation on the N amino (2a) is practically as favorable as the most favorable protonation on the O atom (1a). They also suggest that protonation on the nitroso N atom (2c) is ∼14.5 kcal/mol less favorable than 1a. Results obtained at the MR-CISD+Q/cc-pVTZ level indicate that the effect of methylation on the relative energies of the tautomers is, in order of importance, 2a > 2c and increases their energies by ∼17.5 and 4.8 kcal/mol, respectively. They also indicate that methylation alters significantly the intramolecular proton transfer barriers. The largest differences between the common geometric parameters of both systems have been found for 2a.
Collapse
Affiliation(s)
| | | | | | - Elizete Ventura
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, PB, 58.059-900, Brazil
| | - Silmar Andrade do Monte
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, PB, 58.059-900, Brazil
| |
Collapse
|
43
|
Nikiforov A, Gamez JA, Thiel W, Huix-Rotllant M, Filatov M. Assessment of approximate computational methods for conical intersections and branching plane vectors in organic molecules. J Chem Phys 2015; 141:124122. [PMID: 25273427 DOI: 10.1063/1.4896372] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Quantum-chemical computational methods are benchmarked for their ability to describe conical intersections in a series of organic molecules and models of biological chromophores. Reference results for the geometries, relative energies, and branching planes of conical intersections are obtained using ab initio multireference configuration interaction with single and double excitations (MRCISD). They are compared with the results from more approximate methods, namely, the state-interaction state-averaged restricted ensemble-referenced Kohn-Sham method, spin-flip time-dependent density functional theory, and a semiempirical MRCISD approach using an orthogonalization-corrected model. It is demonstrated that these approximate methods reproduce the ab initio reference data very well, with root-mean-square deviations in the optimized geometries of the order of 0.1 Å or less and with reasonable agreement in the computed relative energies. A detailed analysis of the branching plane vectors shows that all currently applied methods yield similar nuclear displacements for escaping the strong non-adiabatic coupling region near the conical intersections. Our comparisons support the use of the tested quantum-chemical methods for modeling the photochemistry of large organic and biological systems.
Collapse
Affiliation(s)
- Alexander Nikiforov
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Jose A Gamez
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Miquel Huix-Rotllant
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Michael Filatov
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany
| |
Collapse
|
44
|
Lu Z, Beckstead AA, Kohler B, Matsika S. Excited State Relaxation of Neutral and Basic 8-Oxoguanine. J Phys Chem B 2015; 119:8293-301. [DOI: 10.1021/acs.jpcb.5b03565] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Zhen Lu
- Department
of Chemistry, Temple University, Philadelphia, Pennsylvania 19122-6081, United States
| | - Ashley A. Beckstead
- Department
of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717, United States
| | - Bern Kohler
- Department
of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717, United States
| | - Spiridoula Matsika
- Department
of Chemistry, Temple University, Philadelphia, Pennsylvania 19122-6081, United States
| |
Collapse
|
45
|
Hu W, Chan GKL. Excited-State Geometry Optimization with the Density Matrix Renormalization Group, as Applied to Polyenes. J Chem Theory Comput 2015; 11:3000-9. [DOI: 10.1021/acs.jctc.5b00174] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Weifeng Hu
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Garnet Kin-Lic Chan
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| |
Collapse
|
46
|
Georgieva I, Aquino AJA, Plasser F, Trendafilova N, Köhn A, Lischka H. Intramolecular Charge-Transfer Excited-State Processes in 4-(N,N-Dimethylamino)benzonitrile: The Role of Twisting and the πσ* State. J Phys Chem A 2015; 119:6232-43. [PMID: 25989536 PMCID: PMC4476306 DOI: 10.1021/acs.jpca.5b03282] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
![]()
The
structural processes leading to dual fluorescence of 4-(dimethylamino)benzonitrile
in the gas phase and in acetonitrile solvent were investigated using
a combination of multireference configuration interaction (MRCI) and
the second-order algebraic diagrammatic construction (ADC(2)) methods.
Solvent effects were included on the basis of the conductor-like screening
model. The MRCI method was used for computing the nonadiabatic interaction
between the two lowest excited ππ* states (S2(La, CT) and S1(Lb, LE)) and the
corresponding minimum on the crossing seam (MXS) whereas the ADC(2)
calculations were dedicated to assessing the role of the πσ*
state. The MXS structure was found to have a twisting angle of ∼50°.
The branching space does not contain the twisting motion of the dimethylamino
group and thus is not directly involved in the deactivation process
from S2 to S1. Polar solvent effects are not
found to have a significant influence on this situation. Applying Cs symmetry restrictions, the ADC(2) calculations
show that CCN bending leads to a strong stabilization and to significant
charge transfer (CT). Nevertheless, this structure is not a minimum
but converts to the local excitation (LE) structure on releasing the
symmetry constraint. These findings suggest that the main role in
the dynamics is played by the nonadiabatic interaction of the LE and
CT states and that the main source for the dual fluorescence is the
twisted internal charge-transfer state in addition to the LE state.
Collapse
Affiliation(s)
- Ivelina Georgieva
- †Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - Adélia J A Aquino
- ‡Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, United States.,§Institute for Theoretical Chemistry, University of Vienna, A-1090 Vienna, Austria
| | - Felix Plasser
- §Institute for Theoretical Chemistry, University of Vienna, A-1090 Vienna, Austria
| | - Natasha Trendafilova
- †Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - Andreas Köhn
- ∥Institute for Theoretical Chemistry, University of Stuttgart, 70569 Stuttgart, Germany
| | - Hans Lischka
- ‡Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, United States.,§Institute for Theoretical Chemistry, University of Vienna, A-1090 Vienna, Austria
| |
Collapse
|
47
|
Poterya V, Nachtigallová D, Lengyel J, Fárník M. Photodissociation of aniline N–H bonds in clusters of different nature. Phys Chem Chem Phys 2015; 17:25004-13. [DOI: 10.1039/c5cp04485e] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The solvent effects on the photodissociation of aniline in cluster environments have been investigated by H-photofragment velocity map imaging at 243 nm, mass spectrometry after electron ionization, and ab initio calculations.
Collapse
Affiliation(s)
- Viktoriya Poterya
- J. Heyrovský Institute of Physical Chemistry v.v.i
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Dana Nachtigallová
- Institute of Organic Chemistry and Biochemistry v.v.i
- Czech Academy of Sciences
- 16610 Prague 6
- Czech Republic
| | - Jozef Lengyel
- J. Heyrovský Institute of Physical Chemistry v.v.i
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry v.v.i
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| |
Collapse
|
48
|
Zhang D, Peng D, Zhang P, Yang W. Analytic gradients, geometry optimization and excited state potential energy surfaces from the particle-particle random phase approximation. Phys Chem Chem Phys 2014; 17:1025-38. [PMID: 25410624 DOI: 10.1039/c4cp04109g] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The energy gradient for electronic excited states is of immense interest not only for spectroscopy but also for the theoretical study of photochemical reactions. We present the analytic excited state energy gradient of the particle-particle random phase approximation (pp-RPA). The analytic gradient formula is developed from an approach similar to that of time-dependent density-functional theory (TDDFT). The formula is verified for both the Hartree-Fock and (Generalized) Kohn-Sham reference states via comparison with finite difference results. The excited state potential energy surfaces and optimized geometries of some small molecules are investigated, yielding results of similar or better quality compared to adiabatic TDDFT. The singlet-to-triplet instability in TDDFT resulting in underestimated energies of the lowest triplet states is eliminated by pp-RPA. Charge transfer excitations and double excitations, which are challenging for most adiabatic TDDFT methods, can be reasonably well captured by pp-RPA. Within this framework, ground state potential energy surfaces of stretched single bonds can also be described well.
Collapse
Affiliation(s)
- Du Zhang
- Department of Chemistry, Duke University, Durham, NC 27708, USA.
| | | | | | | |
Collapse
|
49
|
Cui ZH, Lischka H, Beneberu HZ, Kertesz M. Double pancake bonds: pushing the limits of strong π-π stacking interactions. J Am Chem Soc 2014; 136:12958-65. [PMID: 25203200 PMCID: PMC4183611 DOI: 10.1021/ja505624y] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Indexed: 11/30/2022]
Abstract
The concept of a double-bonded pancake bonding mechanism is introduced to explain the extremely short π-π stacking contacts in dimers of dithiatriazines. While ordinary single pancake bonds occur between radicals and already display significantly shorter interatomic distances in comparison to van der Waals (vdW) contacts, the double-bonded pancake dimer is based on diradicaloid or antiaromatic molecules and exhibits even shorter and stronger intermolecular bonds that breach into the range of extremely stretched single bonds in terms of bond distances and binding energies. These properties give rise to promising possibilities in the design of new materials with high electrical conductivity and for the field of spintronics. The analysis of the double pancake bond is based on cutting edge electron correlation theory combining multireference (nondynamical) effects and dispersion (dynamical) contributions in a balanced way providing accurate interaction energies and distributions of unpaired spins. It is also shown that the present examples do not stand isolated but that similar mechanisms operate in several analogous nonradical molecular systems to form double-bonded π-stacking pancake dimers. We report on the amazing properties of a new type of stacking interaction mechanism between π conjugated molecules in the form of a "double pancake bond" which breaks the record for short intermolecular distances and provides formidable strength for some π-π stacking interactions.
Collapse
Affiliation(s)
- Zhong-hua Cui
- Department
of Chemistry, Georgetown University, 37th and O Streets, NW, Washington, D.C. 20057-1227, United States
| | - Hans Lischka
- Department
of Chemistry and Biochemistry, Texas Tech
University, Lubbock, Texas 79409-1061, United States
- Institute
for Theoretical Chemistry, University of
Vienna, A-1090 Vienna, Austria
| | - Habtamu Z. Beneberu
- Department
of Chemistry, Georgetown University, 37th and O Streets, NW, Washington, D.C. 20057-1227, United States
- Department
of Chemistry, University of the District
of Columbia, Washington, D.C. 20008, United
States
| | - Miklos Kertesz
- Department
of Chemistry, Georgetown University, 37th and O Streets, NW, Washington, D.C. 20057-1227, United States
| |
Collapse
|
50
|
Ou Q, Fatehi S, Alguire E, Shao Y, Subotnik JE. Derivative couplings between TDDFT excited states obtained by direct differentiation in the Tamm-Dancoff approximation. J Chem Phys 2014; 141:024114. [DOI: 10.1063/1.4887256] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Qi Ou
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Shervin Fatehi
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Ethan Alguire
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Yihan Shao
- Q-Chem, Inc., 6601 Owens Drive, Suite 105, Pleasanton, California 94588, USA
| | - Joseph E. Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| |
Collapse
|