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Alsharif MA, Khan D, Ahmed N, Mukhtar S, Khan P, Hassan MI, Almalki ASA, Obaid RJ. Pharmacological Activities of Novel Chromene Derivatives as Calcium/Calmodulin Dependent Protein Kinase IV (CAMKIV) Inhibitors. ChemistrySelect 2020. [DOI: 10.1002/slct.201904096] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Meshari A. Alsharif
- Department of Chemistry Faculty of Science University of Tabuk Tabuk- 71491 Saudi Arabia
| | - Danish Khan
- Department of Chemistry Indian Institute of Technology Roorkee,Roorkee- 247 667 Uttarakhand India
| | - Naseem Ahmed
- Department of Chemistry Indian Institute of Technology Roorkee,Roorkee- 247 667 Uttarakhand India
| | - Sayeed Mukhtar
- Department of Chemistry Faculty of Science University of Tabuk Tabuk- 71491 Saudi Arabia
| | - Parvez Khan
- Centre for Interdisciplinary research in Basic Sciences, Jamia Millia Islamia New Delhi- 110025 India
| | - Md. Imtaiyaz Hassan
- Centre for Interdisciplinary research in Basic Sciences, Jamia Millia Islamia New Delhi- 110025 India
| | | | - Rami J. Obaid
- Chemistry Department, Faculty of Applied Science Umm Al-Qura University Makkah- 21955 Saudi Arabia
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2
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Zhong H, Zhang YJ, Shan XB. Exploring binding modes of the selected inhibitors to phosphodiesterase delta by all-atom molecular dynamics simulations and free energy calculations. J Biomol Struct Dyn 2019; 37:2415-2429. [DOI: 10.1080/07391102.2018.1491417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Hui Zhong
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, People’s Republic of China
| | - Yan-Jun Zhang
- School of Physics, Huazhong University of Science and Technology, Hubei, People’s Republic of China
| | - Xiao-Bin Shan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, People’s Republic of China
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3
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Akparov VK, Timofeev VI, Khaliullin IG, Konstantinova GE, Kuranova IP, Rakitina TV, Švedas VK. Mobile Loop in the Active Site of Metallocarboxypeptidases as an Underestimated Determinant of Substrate Specificity. BIOCHEMISTRY (MOSCOW) 2019; 83:1594-1602. [PMID: 30878033 DOI: 10.1134/s0006297918120167] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
It is generally accepted that the primary specificity of metallocarboxypeptidases is mainly determined by the structure of the so-called primary specificity pocket. However, the G215S/A251G/T257A/D260G/T262D mutant of carboxypeptidase T from Thermoactinomyces vulgaris (CPT) with the primary specificity pocket fully reproducing the one in pancreatic carboxypeptidase B (CPB) retained the broad, mainly hydrophobic substrate specificity of the wild-type enzyme. In order to elucidate factors affecting substrate specificity of metallocarboxypeptidases and the reasons for the discrepancy with the established views, we have solved the structure of the complex of the CPT G215S/A251G/T257A/D260G/T262D mutant with the transition state analogue N-sulfamoyl-L-phenylalanine at a resolution of 1.35 Å and compared it with the structure of similar complex formed by CPB. The comparative study revealed a previously underestimated structural determinant of the substrate specificity of metallocarboxypeptidases and showed that even if substitution of five amino acid residues in the primary specificity pocket results in its almost complete structural correspondence to the analogous pocket in CPB, this does not lead to fundamental changes in the substrate specificity of the mutant enzyme due to the differences in the structure of the mobile loop located at the active site entrance that affects the substrate-induced conformational rearrangements of the active site.
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Affiliation(s)
- V Kh Akparov
- State Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia.
| | - V I Timofeev
- Shubnikov Institute of Crystallography, Crystallography and Photonics Federal Scientific Research Center, Russian Academy of Sciences, Moscow, 119333, Russia. .,Kurchatov Institute National Research Center, Moscow, 123098, Russia
| | - I G Khaliullin
- Laboratory of Ion and Molecular Physics, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region, 141700, Russia.
| | - G E Konstantinova
- State Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia
| | - I P Kuranova
- Shubnikov Institute of Crystallography, Crystallography and Photonics Federal Scientific Research Center, Russian Academy of Sciences, Moscow, 119333, Russia. .,Kurchatov Institute National Research Center, Moscow, 123098, Russia
| | - T V Rakitina
- Kurchatov Institute National Research Center, Moscow, 123098, Russia. .,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Laboratory of Hormonal Regulation Proteins, Russian Academy of Sciences, Moscow, 117997, Russia
| | - V K Švedas
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, 119991, Russia.
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Rakhshani S, Rezvani AR, Dušek M, Eigner V. Design and fabrication of novel thiourea coordination compounds as potent inhibitors of bacterial growth. J Antibiot (Tokyo) 2019; 72:260-270. [PMID: 30755737 DOI: 10.1038/s41429-019-0147-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Revised: 12/19/2018] [Accepted: 01/16/2019] [Indexed: 11/09/2022]
Abstract
A new thiourea ligand (HL), namely N-(4-chlorophenyl)morpholine-4-carbothioamide and its Co(III), Ni(II) and Ag(I) complexes (1a, 1b and 1c) were synthesized and investigated by Fourier-transform infrared, 1H NMR and UV-visible spectroscopies. The compounds HL and 1c were characterized by single-crystal X-ray crystallography revealing the triclinic space group P[Formula: see text] for both compounds. The inhibitory effect of HL ligand, 1a, 1b, and 1c complexes was investigated with in vitro tests on Gram-positive and Gram-negative bacteria. For the 1c complex, the results showed that the coordination of the HL to Ag(I) ion increased its antibacterial effect especially against E. coli. The assays also indicated that for the same bacteria strains, the new complexes showed higher activity than the ligand, with the relative activity 1c > 1b > 1a > HL. Moreover, all samples were more suitable antimicrobial agents against the Gram-negative than those of the Gram-positive bacteria. Eventually, the relationship between the structure and bactericidal activities of these specimens was examined by calculating frontier molecular orbital (HOMO and LUMO) energies using density functional theory method at the 6-31 G*/LANL2DZ level of theory.
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Affiliation(s)
- Sajjad Rakhshani
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, P.O. Box 98135-674, Iran
| | - Ali Reza Rezvani
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, P.O. Box 98135-674, Iran.
| | - Michal Dušek
- Institute of Physics, Academy of Sciences of the Czech Republic, Na Slovance 2, 182 21, Praha 8, Czech Republic
| | - Václav Eigner
- Institute of Physics, Academy of Sciences of the Czech Republic, Na Slovance 2, 182 21, Praha 8, Czech Republic
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Agrawal SB, Ghosh D, Gaikwad SM. Investigation of structural and saccharide binding transitions of Bauhinia purpurea and Wisteria floribunda lectins. Arch Biochem Biophys 2019; 662:134-142. [DOI: 10.1016/j.abb.2018.12.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 11/19/2018] [Accepted: 12/03/2018] [Indexed: 11/28/2022]
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6
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Theoretical investigations of human acetylcholinesterase inhibition efficiency by neurotoxic organophosphorus compounds. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.05.072] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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7
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Bernhardt PV, Bilyj JK, Brosius V, Chernyshov D, Deeth RJ, Foscato M, Jensen VR, Mertes N, Riley MJ, Törnroos KW. Spin Crossover in a Hexaamineiron(II) Complex: Experimental Confirmation of a Computational Prediction. Chemistry 2018; 24:5082-5085. [PMID: 29315883 PMCID: PMC5988046 DOI: 10.1002/chem.201705439] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Indexed: 11/08/2022]
Abstract
Single crystal structural analysis of [FeII (tame)2 ]Cl2 ⋅MeOH (tame=1,1,1-tris(aminomethyl)ethane) as a function of temperature reveals a smooth crossover between a high temperature high-spin octahedral d6 state and a low temperature low-spin ground state without change of the symmetry of the crystal structure. The temperature at which the high and low spin states are present in equal proportions is T1/2 =140 K. Single crystal, variable-temperature optical spectroscopy of [FeII (tame)2 ]Cl2 ⋅MeOH is consistent with this change in electronic ground state. These experimental results confirm the spin activity predicted for [FeII (tame)2 ]2+ during its de novo artificial evolution design as a spin-crossover complex [Chem. Inf. MODEL 2015, 55, 1844], offering the first experimental validation of a functional transition-metal complex predicted by such in silico molecular design methods. Additional quantum chemical calculations offer, together with the crystal structure analysis, insight into the role of spin-passive structural components. A thermodynamic analysis based on an Ising-like mean field model (Slichter-Drickammer approximation) provides estimates of the enthalpy, entropy and cooperativity of the crossover between the high and low spin states.
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Affiliation(s)
- Paul V. Bernhardt
- School of Chemistry and Molecular BiosciencesUniversity of QueenslandBrisbane4072Australia
| | - Jessica K. Bilyj
- School of Chemistry and Molecular BiosciencesUniversity of QueenslandBrisbane4072Australia
| | - Victor Brosius
- School of Chemistry and Molecular BiosciencesUniversity of QueenslandBrisbane4072Australia
| | - Dmitry Chernyshov
- European Synchrotron Radiation Facility71 Avenue des MartyrsGrenoble38000France
| | - Robert J. Deeth
- Department of ChemistryUniversity of WarwickCoventryCV4 7ALUK
- Present address: Department of ChemistryUniversity of Bath, Claverton DownBathBA2 7AYUK
| | - Marco Foscato
- Department of ChemistryUniversity of BergenAllégaten 415007BergenNorway
| | - Vidar R. Jensen
- Department of ChemistryUniversity of BergenAllégaten 415007BergenNorway
| | - Nicole Mertes
- School of Chemistry and Molecular BiosciencesUniversity of QueenslandBrisbane4072Australia
| | - Mark J. Riley
- School of Chemistry and Molecular BiosciencesUniversity of QueenslandBrisbane4072Australia
| | - Karl W. Törnroos
- Department of ChemistryUniversity of BergenAllégaten 415007BergenNorway
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Rakhshani S, Rezvani AR, Dušek M, Eigner V. Design and synthesis of novel thiourea metal complexes with controllable antibacterial properties. Appl Organomet Chem 2018. [DOI: 10.1002/aoc.4342] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sajjad Rakhshani
- Department of Chemistry; University of Sistan and Baluchestan; PO Box 98135-674 Zahedan Iran
| | - Ali Reza Rezvani
- Department of Chemistry; University of Sistan and Baluchestan; PO Box 98135-674 Zahedan Iran
| | - Michal Dušek
- Institute of Physics; Academy of Sciences of the Czech Republic; Na Slovance 2 182 21 Praha 8 Czech Republic
| | - Václav Eigner
- Institute of Physics; Academy of Sciences of the Czech Republic; Na Slovance 2 182 21 Praha 8 Czech Republic
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Jha P, Chaturvedi S, Kaul A, Pant P, Anju A, Pal S, Jain N, Mishra AK. Design, physico-chemical and pre-clinical evaluation of a homo-bivalent 99mTc-(BTZ)2DTPA radioligand for targeting dimeric 5-HT1A/5-HT7 receptors. NEW J CHEM 2018. [DOI: 10.1039/c8nj00089a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
A 99mTc-labelled bis-benzothiazolone-DTPA radio-complex as a SPECT neuroimaging agent.
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Affiliation(s)
- Preeti Jha
- Department of Chemistry
- Indian Institute of Technology Delhi (IITD)
- India
- Division of Cyclotron and Radiopharmaceutical Sciences
- Institute of Nuclear Medicine and Allied Sciences
| | - Shubhra Chaturvedi
- Division of Cyclotron and Radiopharmaceutical Sciences
- Institute of Nuclear Medicine and Allied Sciences
- Defence Research and Development Organization
- Delhi-110054
- India
| | - Ankur Kaul
- Division of Cyclotron and Radiopharmaceutical Sciences
- Institute of Nuclear Medicine and Allied Sciences
- Defence Research and Development Organization
- Delhi-110054
- India
| | - Pradeep Pant
- Department of Chemistry
- Indian Institute of Technology Delhi (IITD)
- India
| | - Anju Anju
- Division of Cyclotron and Radiopharmaceutical Sciences
- Institute of Nuclear Medicine and Allied Sciences
- Defence Research and Development Organization
- Delhi-110054
- India
| | - Sunil Pal
- Division of Cyclotron and Radiopharmaceutical Sciences
- Institute of Nuclear Medicine and Allied Sciences
- Defence Research and Development Organization
- Delhi-110054
- India
| | - Nidhi Jain
- Department of Chemistry
- Indian Institute of Technology Delhi (IITD)
- India
| | - Anil K. Mishra
- Division of Cyclotron and Radiopharmaceutical Sciences
- Institute of Nuclear Medicine and Allied Sciences
- Defence Research and Development Organization
- Delhi-110054
- India
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