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Guzmán-Lagunes F, Martínez-dlCruz L, Wongsirichot P, Winterburn J, Montiel C. Production of polyhydroxybutyrate by coupled saccharification-fermentation of inulin. Bioprocess Biosyst Eng 2024; 47:119-129. [PMID: 38006410 PMCID: PMC10776465 DOI: 10.1007/s00449-023-02953-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 11/15/2023] [Indexed: 11/27/2023]
Abstract
Inulin is a fructose-based polysaccharide that can be found in several plant species, from grass and onions to chicory roots; thus, it has the potential to be an excellent renewable source of fructose for several industrial applications. Among them, inulin hydrolysis can be coupled to a fermentation operation to produce polyhydroxybutyrate (PHB) using Cupriavidus necator H16. This work reports the PHB production process involving chicory root inulin hydrolysis using inulinase Novozym 960 followed by a C. necator fermentation. It was found that the maximum saccharification (95% wt.) was reached at 269 U/ginulin after 90 min. The hydrolysates obtained were then inoculated with C. necator, leading to a biomass concentration of 4 g/L with 30% (w/w) polymer accumulation. Although PHB production was low, during the first hours, the cell growth and polymer accumulation detected did not coincide with a fructose concentration decrease, suggesting a simultaneous saccharification and fermentation process, potentially alleviating the product inhibition inherent to the inulinase-fructose system. The characterization of the obtained PHB showed a polymer with more homogeneous values of Mw, and better thermal stability than PHB produced using pure fructose as a fermentation substrate. The results obtained demonstrate a viable alternative carbon substrate for PHB production, opening the possibility for inulin-rich renewable feedstock valorization.
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Affiliation(s)
- Fernando Guzmán-Lagunes
- Food Sciences and Biotechnology Department, Faculty of Chemistry, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Lorena Martínez-dlCruz
- Department of Physical Chemistry, Faculty of Chemistry, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Phavit Wongsirichot
- Department of Chemical Engineering, Faculty of Science and Engineering, The University of Manchester, Manchester, UK
| | - James Winterburn
- Department of Chemical Engineering, Faculty of Science and Engineering, The University of Manchester, Manchester, UK
| | - Carmina Montiel
- Food Sciences and Biotechnology Department, Faculty of Chemistry, Universidad Nacional Autónoma de México, Mexico City, Mexico.
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2
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Canatar M, Tufan HNG, Ünsal SBE, Koc CY, Ozcan A, Kucuk G, Basmak S, Yatmaz E, Germec M, Yavuz I, Turhan I. Inulinase and fructooligosaccharide production from carob using Aspergillus niger A42 (ATCC 204447) under solid-state fermentation conditions. Int J Biol Macromol 2023:125520. [PMID: 37353118 DOI: 10.1016/j.ijbiomac.2023.125520] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 06/06/2023] [Accepted: 06/20/2023] [Indexed: 06/25/2023]
Abstract
This study aimed to the production of inulinase and fructooligosaccharides (FOSs) from carob under the solid-state fermentation (SSF) conditions by using Plackett-Burman Design (PBD). Based on the results the maximum inulinase and specific inulinase activities were 249.98 U/mL and 318.29 U/mg protein, respectively. When the fructooligosaccharide (FOS) results were evaluated, the maximum values of 1,1,1-Kestopentaose, 1,1-Kestotetraose, and 1-Kestose were 182.01, 506.16, 132.16 ppm while the lowest and highest total FOS values were 179.35 and 516.66 ppm, respectively. On the other hand, it was observed that the maximum inulinase activity was found at the center points of the design. Therefore, validation fermentations were carried out at center point conditions. Subsequently, the yielded bulk enzyme extracts were partially purified using Spin-X UF membranes with 10, 30, and 50 kDa cut-off values. After purification, the maximum inulinase activity was 247.30 U/mg using a 50 kDa cut-off value. Followed by this process, the purified enzyme was used to produce FOSs and the results indicated that the maximum total FOS amount was 28,712.70 ppm. Consequently, this study successfully demonstrates that Aspergillus niger A42 inulinase produced from carob under the SSF conditions can be used in FOSs production.
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Affiliation(s)
- Muge Canatar
- Manavgat Vocational School, Akdeniz University, Manavgat, Antalya 07600, Turkey
| | | | | | - Cansu Yılmazer Koc
- Department of Food Engineering, Akdeniz University, Antalya 07058, Turkey
| | - Ali Ozcan
- Department of Food Engineering, Akdeniz University, Antalya 07058, Turkey
| | - Gokce Kucuk
- Department of Food Engineering, Akdeniz University, Antalya 07058, Turkey
| | - Selin Basmak
- Department of Food Engineering, Akdeniz University, Antalya 07058, Turkey
| | - Ercan Yatmaz
- Göynük Culinary Arts Vocational School, Akdeniz University, Kemer, Antalya 07994, Turkey
| | - Mustafa Germec
- Department of Food Engineering, Akdeniz University, Antalya 07058, Turkey
| | - Ibrahim Yavuz
- Technical Sciences Vocational School, Department Of Plant And Animal Production, Organic Agriculture Pr, Akdeniz University, Antalya 07058, Turkey
| | - Irfan Turhan
- Department of Food Engineering, Akdeniz University, Antalya 07058, Turkey.
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3
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Rhizopus oryzae Inulinase Production and Characterization with Application in Chicory Root Saccharification. MICROBIOLOGY RESEARCH 2023. [DOI: 10.3390/microbiolres14010024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023] Open
Abstract
The objective of this study was to create a fermentation process for the production of inulinase, an important enzyme with numerous applications in the food and pharmaceutical industries, using low-cost agricultural waste as substrates for Rhizopus oryzae NRRL 3563. High titer inulinase production in chicory roots by Rhizopus oryzae in a submerged culture was accomplished using a statistical experimental design. A two-level Plackett–Burman design followed by a three-level Box–Behnken design producing a high inulinase titer of 1085.11 U/mL, 2.83-fold the maximum level, was obtained in the screening experiment. The optimal levels were as follows: chicory root, 10 g/L; NaNO3, 5 g/L; and KCl, 0.2 g/L. The produced inulinase enzyme was purified using 70% ammonium sulfate precipitation and ultra-filtration causing 3.63-fold purification with 60% activity recovery. The enzyme had a molecular weight of approximately 130 KDa. The purified enzyme showed optimum activity at 50 °C and pH 6.0. The pH stability range was three to six and the temperature stability was up 70 °C. The purified inulinase could hydrolyze inulin and sucrose, but not cellobiose or soluble starch. Km and Vmax for inulin were determined to be 0.8 mg/mL and 50,000 U/mg, respectively. The two-level Plackett–Burman design was applied followed by a Box–Behnken model for optimization of fermentation conditions. Accordingly, the optimal combination of fermentation was a reaction time of seven hours, a temperature of 60 °C, and an enzyme concentration of 40,000 U/mL, which resulted in a 58.07% saccharification yield. The characteristics of the enzyme and its kinetic parameters suggested that it was highly effective in the fermentation of inulin and inulin-containing substrates. Additionally, it raises the potential of using inulinase enzymes in pharmaceutical and food industries.
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4
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Germec M, Turhan I. Predictive modeling and sensitivity analysis to estimate the experimental data of inulinase fermentation by Aspergillus niger grown on sugar beet molasses-based medium optimized using Plackett-Burman Design. Biotechnol Appl Biochem 2022; 69:2399-2421. [PMID: 34847250 DOI: 10.1002/bab.2291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 11/23/2021] [Indexed: 12/27/2022]
Abstract
The present work aimed to model Aspergillus niger inulinase fermentation performed in the medium using sigmoidal functions, validate the selected models using an independent set of the experimental values, and perform a sensitivity analysis of the selected models. Based on the results, the selected models were Stannard and Fitzhugh models for substrate consumption (R2 = 0.9976 and 0.9974, respectively), Huang model for inulinase production (R2 = 0.9967), Weibull model for invertase-type production (R2 = 0.9963), and modified logistic model for invertase-type activity/inulinase activity ratio (R2 = 0.9292) with high R2 values (>0.90). Kinetics predicted by particularly selected models mentioned above fit well with the experimental kinetic results. Besides, validation of the selected models with an independent set of the experimental data indicated that they gave satisfying results with high R2 values for consumption and production (R2 > 0.90). Sensitivity analysis of the selected models showed that the yielded R2 values (R2 ≥ 0.9775) were in good agreement with those obtained from the selected models. Consequently, A. niger inulinase fermentation was successfully modeled and the selected models were successfully validated with an independent set of the observed data. Besides, the sensitivity analysis also verified the reliability of the selected models. Those models can serve as universal equations to describe the A. niger inulinase fermentation.
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Affiliation(s)
- Mustafa Germec
- Department of Food Engineering, Faculty of Engineering, Akdeniz University, Antalya, Turkey
| | - Irfan Turhan
- Department of Food Engineering, Faculty of Engineering, Akdeniz University, Antalya, Turkey
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Lian D, Zhuang S, Shui C, Zheng S, Ma Y, Sun Z, Porras-Domínguez JR, Öner ET, Liang M, Van den Ende W. Characterization of inulolytic enzymes from the Jerusalem artichoke-derived Glutamicibacter mishrai NJAU-1. Appl Microbiol Biotechnol 2022; 106:5525-5538. [PMID: 35896838 DOI: 10.1007/s00253-022-12088-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 07/17/2022] [Accepted: 07/20/2022] [Indexed: 11/28/2022]
Abstract
The rhizosphere context of inulin-accumulating plants, such as Jerusalem artichoke (Helianthus tuberosus), is an ideal starting basis for the discovery of inulolytic enzymes with potential for bio fructose production. We isolated a Glutamicibacter mishrai NJAU-1 strain from this context, showing exo-inulinase activity, releasing fructose from fructans. The growth conditions (pH 9.0; 15 °C) were adjusted, and the production of inulinase by Glutamicibacter mishrai NJAU-1 increased by 90% (0.32 U/mL). Intriguingly, both levan and inulin, but not fructose and sucrose, induced the production of exo-inulinase activity. Two exo-inulinase genes (inu1 and inu2) were cloned and heterologously expressed in Pichia pastoris. While INU2 preferentially hydrolyzed longer inulins, the smallest fructan 1-kestose appeared as the preferred substrate for INU1, also efficiently degrading nystose and sucrose. Active site docking studies with GFn- and Fn-type small inulins (G is glucose, F is fructose, and n is the number of β (2-1) bound fructose moieties) revealed subtle substrate differences between INU1 and INU2. A possible explanation about substrate specificity and INU's protein structure is then suggested. KEY POINTS: • A Glutamicibacter mishrai strain harbored exo-inulinase activity. • Fructans induced the inulolytic activity in G. mishrai while the inulolytic activity was optimized at pH 9.0 and 15 °C. • Two exo-inulinases with differential substrate specificity were characterized.
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Affiliation(s)
- Dan Lian
- Jiangsu Key Lab of Marine Biology, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Shuo Zhuang
- Jiangsu Key Lab of Marine Biology, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Chen Shui
- Jiangsu Key Lab of Marine Biology, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Shicheng Zheng
- Jiangsu Key Lab of Marine Biology, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Yanhong Ma
- Institute of Agro-Product Processing, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, Jiangsu, China
| | - Zongjiu Sun
- College of Grassland and Environmental Sciences, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang, China
| | - Jaime R Porras-Domínguez
- Laboratory of Molecular Plant Biology and KU Leuven Plant Institute, KU Leuven, Kasteelpark Arenberg 31, 3001, Louvain, Belgium
| | - Ebru Toksoy Öner
- Department of Bioengineering, Faculty of Engineering, Marmara University, Istanbul, 34722, Turkey
| | - Mingxiang Liang
- Jiangsu Key Lab of Marine Biology, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China.
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology and KU Leuven Plant Institute, KU Leuven, Kasteelpark Arenberg 31, 3001, Louvain, Belgium
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6
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Cen X, Zhang R, He L, Tang X, Wu Q, Zhou J, Huang Z. Deletion of the Loop Linking Two Domains of Exo-Inulinase InuAMN8 Diminished the Enzymatic Thermo-Halo-Alcohol Tolerance. Front Microbiol 2022; 13:924447. [PMID: 35814689 PMCID: PMC9260423 DOI: 10.3389/fmicb.2022.924447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Accepted: 05/31/2022] [Indexed: 11/27/2022] Open
Abstract
Inulin is the rich water-soluble storage polysaccharide after starch in nature, and utilization of inulin through hydrolysis of exo-inulinases has attracted much attention. Thermo-halo-alcohol tolerance is essential for exo-inulinase applications, while no report reveals the molecular basis involved in halo-alcohol tolerance of exo-inulinases via experimental data. In this study, two loops of exo-inulinase InuAMN8, including the loop built with 360GHVRLGPQP368 linking domains of Glyco_hydro_32N and Glyco_hydro_32C and another loop built with 169GGAG172 in the catalytic domain, were deleted to generate mutants MutG360Δ9 and MutG169Δ4, respectively. After heterologous expression, purification, and dialysis, InuAMN8, MutG169Δ4, and MutG360Δ9 showed half-lives of 144, 151, and 7 min at 50°C, respectively. InuAMN8 and MutG169Δ4 were very stable, while MutG360Δ9 showed a half-life of approximately 60 min in 5.0% (w/v) NaCl, and they showed half-lives of approximately 60 min in 25.0, 25.0, and 5.0% (w/v) ethanol, respectively. Structural analysis indicated that two cation-π bonds, which contributed to thermal properties of InuAMN8 at high temperatures, broke in MutG360Δ9. Four basic amino acid residues were exposed to the structural surface of MutG360Δ9 and formed positive and neutral electrostatic potential that caused detrimental effects on halo-alcohol tolerance. The study may provide a better understanding of the loop-function relationships that are involved in thermo-halo-alcohol adaptation of enzymes in extreme environment.
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Affiliation(s)
- Xiaolong Cen
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University, Kunming, China
- College of Life Sciences, Yunnan Normal University, Kunming, China
- Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, China
- Key Laboratory of Yunnan Provincial Education Department for Plateau Characteristic Food Enzymes, Yunnan Normal University, Kunming, China
| | - Rui Zhang
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University, Kunming, China
- College of Life Sciences, Yunnan Normal University, Kunming, China
- Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, China
- Key Laboratory of Yunnan Provincial Education Department for Plateau Characteristic Food Enzymes, Yunnan Normal University, Kunming, China
| | - Limei He
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University, Kunming, China
- College of Life Sciences, Yunnan Normal University, Kunming, China
- Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, China
- Key Laboratory of Yunnan Provincial Education Department for Plateau Characteristic Food Enzymes, Yunnan Normal University, Kunming, China
| | - Xianghua Tang
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University, Kunming, China
- College of Life Sciences, Yunnan Normal University, Kunming, China
- Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, China
- Key Laboratory of Yunnan Provincial Education Department for Plateau Characteristic Food Enzymes, Yunnan Normal University, Kunming, China
| | - Qian Wu
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University, Kunming, China
- College of Life Sciences, Yunnan Normal University, Kunming, China
- Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, China
- Key Laboratory of Yunnan Provincial Education Department for Plateau Characteristic Food Enzymes, Yunnan Normal University, Kunming, China
| | - Junpei Zhou
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University, Kunming, China
- College of Life Sciences, Yunnan Normal University, Kunming, China
- Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, China
- Key Laboratory of Yunnan Provincial Education Department for Plateau Characteristic Food Enzymes, Yunnan Normal University, Kunming, China
- *Correspondence: Junpei Zhou, ,
| | - Zunxi Huang
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Yunnan Normal University, Kunming, China
- College of Life Sciences, Yunnan Normal University, Kunming, China
- Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, China
- Key Laboratory of Yunnan Provincial Education Department for Plateau Characteristic Food Enzymes, Yunnan Normal University, Kunming, China
- Zunxi Huang,
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7
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Nath S, Kango N. Recent Developments in Industrial Mycozymes: A Current Appraisal. Mycology 2022; 13:81-105. [PMID: 35711326 PMCID: PMC9196846 DOI: 10.1080/21501203.2021.1974111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Fungi, being natural decomposers, are the most potent, ubiquitous and versatile sources of industrial enzymes. About 60% of market share of industrial enzymes is sourced from filamentous fungi and yeasts. Mycozymes (myco-fungus; zymes-enzymes) are playing a pivotal role in several industrial applications and a number of potential applications are in the offing. The field of mycozyme production, while maintaining the old traditional methods, has also witnessed a sea change due to advents in recombinant DNA technology, optimisation protocols, fermentation technology and systems biology. Consolidated bioprocessing of abundant lignocellulosic biomass and complex polysaccharides is being explored at an unprecedented pace and a number of mycozymes of diverse fungal origins are being explored using suitable platforms. The present review attempts to revisit the current status of various mycozymes, screening and production strategies and applications thereof.
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Affiliation(s)
- Suresh Nath
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar, MP, India
| | - Naveen Kango
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar, MP, India
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8
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Ojwach J, Adetunji AI, Mutanda T, Mukaratirwa S. Oligosaccharides production from coprophilous fungi: An emerging functional food with potential health-promoting properties. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2022; 33:e00702. [PMID: 35127459 PMCID: PMC8803601 DOI: 10.1016/j.btre.2022.e00702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Revised: 01/08/2022] [Accepted: 01/13/2022] [Indexed: 11/26/2022]
Abstract
Functional foods are essential food products that possess health-promoting properties for the treatment of infectious diseases. In addition, they provide energy and nutrients, which are required for growth and survival. They occur as prebiotics or dietary supplements, including oligosaccharides, processed foods, and herbal products. However, oligosaccharides are more efficiently recognized and utilized, as they play a fundamental role as functional ingredients with great potential to improve health in comparison to other dietary supplements. They are low molecular weight carbohydrates with a low degree of polymerization. They occur as fructooligosaccharide (FOS), inulooligosaccharadie (IOS), and xylooligosaccahride (XOS), depending on their monosaccharide units. Oligosaccharides are produced by acid or chemical hydrolysis. However, this technique is liable to several drawbacks, including inulin precipitation, high processing temperature, low yields, and high production costs. As a consequence, the application of microbial enzymes for oligosaccharide production is recognized as a promising strategy. Microbial enzymatic production of FOS and IOS occurs by submerged or solid-state fermentation in the presence of suitable substrates (sucrose, inulin) and catalyzed by fructosyltransferases and inulinases. Incorporation of FOS and IOS enriches the rheological and physiological characteristics of foods. They are used as low cariogenic sugar substitutes, suitable for diabetics, and as prebiotics, probiotics and nutraceutical compounds. In addition, these oligosaccharides are employed as anticancer, antioxidant agents and aid in mineral absorption, lipid metabolism, immune regulation etc. This review, therefore, focuses on the occurrence, physico-chemical characteristics, and microbial enzymatic synthesis of FOS and IOS from coprophilous fungi. In addition, the potential health benefits of these oligosaccharides were discussed in detail.
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Affiliation(s)
- Jeff Ojwach
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, United Kingdom
- Department of Biodiversity and Conservation Biology, Faculty of Natural Science, University of the Western Cape, Private Bag X17 Bellville 7530, South Africa
- School of Life Sciences, College of Agriculture Engineering and Science, University of KwaZulu-Natal (Westville Campus), Private Bag X54001, Durban 4000, South Africa
| | - Adegoke Isiaka Adetunji
- School of Life Sciences, College of Agriculture Engineering and Science, University of KwaZulu-Natal (Westville Campus), Private Bag X54001, Durban 4000, South Africa
| | - Taurai Mutanda
- Centre for Algal Biotechnology, Department of Nature Conservation, Faculty of Natural Sciences, Mangosuthu University of Technology, P.O. Box 12363, Jacobs 4026, Durban, South Africa
| | - Samson Mukaratirwa
- School of Life Sciences, College of Agriculture Engineering and Science, University of KwaZulu-Natal (Westville Campus), Private Bag X54001, Durban 4000, South Africa
- One Health Center for Zoonoses and Tropical Veterinary Medicine, Ross University, School of Veterinary Medicine, P.O. Box 334, Basseterre, St. Kitts, West Indies
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9
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Li F, Wang M, Chi Z, Zhang Z, Wang X, Xing M, Chi Z, Liu G. A novel transcriptional activation mechanism of inulinase gene in Kluyveromyces marxianus involving a glycolysis regulator KmGcr1p with unique and functional Q-rich repeats. Mol Microbiol 2022; 117:1063-1079. [PMID: 35218085 DOI: 10.1111/mmi.14889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 02/18/2022] [Accepted: 02/21/2022] [Indexed: 11/28/2022]
Abstract
Kluyveromyces marxianus is the most suitable fungus for inulinase industrial production. However, the underlying transcriptional activation mechanism of the inulinase gene (INU1) is hitherto unclear. Here, we undertook genetic and biochemical analyses to elucidate that a glycolysis regulator KmGcr1p with unique Q-rich repeats is the key transcriptional activator of INU1. We determined that INU1 and glycolytic genes share similar transcriptional activation patterns, and that inulinase activity is induced by fermentable carbon sources including the hydrolysis products of inulin (fructose and glucose), which suggests a novel model of product feedback activation. Furthermore, all four CT-boxes in the INU1 promoter are important for KmGcr1p DNA binding in vitro, but the most downstream CT-box 1 primarily confers upstream activating sequence activity in vivo. More intriguingly, the use of artificial and natural GCR1 mutants suggests that the Q-rich repeats act as a functional module to maintain KmGcr1p transcriptional activity by contributing to its solubility and DNA binding affinity. Altogether, this study uncovers a novel transcriptional activation mechanism for the inulinase gene that is different from the previous understanding for filamentous fungi, but might have universal significance among inulinase-producing yeasts, thereby leading to a better understanding of the regulation mechanism of yeast inulinase genes.
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Affiliation(s)
- Fengyi Li
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China
| | - Mengqi Wang
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China
| | - Zhe Chi
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China.,Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Zhaoxuan Zhang
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China
| | - Xiaoxiang Wang
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China
| | - Mengdan Xing
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China
| | - Zhenming Chi
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China.,Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.,Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, China
| | - Guanglei Liu
- College of Marine Life Science, Ocean University of China, Yushan Road, No. 5, Qingdao, Shandong, China.,Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.,Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, China
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10
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He L, Zhang R, Shen J, Miao Y, Zeng C, Tang X, Wu Q, Zhou J, Huang Z. Improving the low-temperature properties of an exo-inulinase via the deletion of a loop fragment located in its catalytic pocket. ELECTRON J BIOTECHN 2022. [DOI: 10.1016/j.ejbt.2021.09.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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11
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Tsujikawa Y, Ishikawa S, Sakane I, Yoshida KI, Osawa R. Identification of genes encoding a novel ABC transporter in Lactobacillus delbrueckii for inulin polymers uptake. Sci Rep 2021; 11:16007. [PMID: 34362962 PMCID: PMC8346543 DOI: 10.1038/s41598-021-95356-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 07/26/2021] [Indexed: 02/07/2023] Open
Abstract
Lactobacillus delbrueckii JCM 1002T grows on highly polymerized inulin-type fructans as its sole carbon source. When it was grown on inulin, a > 10 kb long gene cluster inuABCDEF (Ldb1381-1386) encoding a plausible ABC transporter was suggested to be induced, since a transcriptome analysis revealed that the fourth gene inuD (Ldb1384) was up-regulated most prominently. Although Bacillus subtilis 168 is originally unable to utilize inulin, it became to grow on inulin upon heterologous expression of inuABCDEF. When freshly cultured cells of the recombinant B. subtilis were then densely suspended in buffer containing inulin polymers and incubated, inulin gradually disappeared from the buffer and accumulated in the cells without being degraded, whereas levan-type fructans did not disappear. The results imply that inuABCDEF might encode a novel ABC transporter in L. delbrueckii to "monopolize" inulin polymers selectively, thereby, providing a possible advantage in competition with other concomitant inulin-utilizing bacteria.
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Affiliation(s)
- Yuji Tsujikawa
- Central Research Institute, ITO EN, Ltd., 21 Mekami, Makinohara, Shizuoka 421-0516 Japan ,grid.31432.370000 0001 1092 3077Department of Bioresource Science, Graduate School of Agricultural Science, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501 Japan
| | - Shu Ishikawa
- grid.31432.370000 0001 1092 3077Department of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada, Kobe 657-8501 Japan
| | - Iwao Sakane
- Central Research Institute, ITO EN, Ltd., 21 Mekami, Makinohara, Shizuoka 421-0516 Japan
| | - Ken-ichi Yoshida
- grid.31432.370000 0001 1092 3077Department of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada, Kobe 657-8501 Japan
| | - Ro Osawa
- grid.31432.370000 0001 1092 3077Department of Bioresource Science, Graduate School of Agricultural Science, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501 Japan
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12
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Choukade R, Kango N. Production, properties, and applications of fructosyltransferase: a current appraisal. Crit Rev Biotechnol 2021; 41:1178-1193. [PMID: 34015988 DOI: 10.1080/07388551.2021.1922352] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
BACKGROUND Fructosyltransferases (FTases) are drawing increasing attention due to their application in prebiotic fructooligosaccharide (FOS) generation. FTases have been reported to occur in a variety of microorganisms but are predominantly found in filamentous fungi. These are employed at the industrial scale for generating FOS which make the key ingredient in functional food supplements and nutraceuticals due to their bifidogenic and various other health-promoting properties. SCOPE AND APPROACH This review is aimed to discuss recent developments made in the area of FTase production, characterization, and application in order to present a comprehensive account of their present status to the reader. Structural features, catalytic mechanisms, and FTase improvement strategies have also been discussed in order to provide insight into these aspects. KEY FINDINGS AND CONCLUSIONS Although FTases occur in several plants and microorganisms, fungal FTases are being exploited commercially for industrial-scale FOS generation. Several fungal FTases have been characterized and heterologously expressed. However, considerable scope exists for improved production and application of FTases for cost-effective production of prebiotic FOS.HIGHLIGHTSFructosyltrasferase (FTase) is a key enzyme in fructo-oligosaccharide (FOS) generationDevelopments in the production, properties, and functional aspects of FTasesMolecular modification and immobilization strategies for improved FOS generationFructosyltransferases are innovation hotspots in the food and nutraceutical industries.
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Affiliation(s)
- Ritumbhara Choukade
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar, India
| | - Naveen Kango
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar, India
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Rawat HK, Soni H, Suryawanshi RK, Choukade R, Prajapati BP, Kango N. Exo-inulinase production from Aspergillus fumigatus NFCCI 2426: purification, characterization, and immobilization for continuous fructose production. J Food Sci 2021; 86:1778-1790. [PMID: 33884619 DOI: 10.1111/1750-3841.15681] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 02/11/2021] [Accepted: 02/15/2021] [Indexed: 11/28/2022]
Abstract
Aspergillus fumigatus was found to produce thermostable exo-inulinase (EC 3.8.1.80; 38 U/ml) on inulin-rich infusions. Exo-inulinase (14.6 U/mg) was immobilized on glutaraldehyde activated Ca-alginate beads for continuous generation of fructose by hydrolyzing sucrose, chicory, and dandelion substrates. Immobilization of enzyme was confirmed by microscopic and spectroscopic techniques. The exo-inulinase was purified using ion-exchange (1.30-folds) and size-exclusion chromatography (2.71-folds). The purified exo-inulinase showed 64 kDa band on gel and was optimally active at 60 °C and pH 6.0. Kinetic constants, Km and Vmax of purified exo-inulinase, were 5.88 mM and 1.66 µM/min, respectively, and its relative activity was found to be enhanced (125.8%) in the presence of calcium ion. Immobilized preparation was utilized for continuous generation of fructose from chicory juice (26 to 70%) and dandelion root extracts (16 to 24%) by recycling upto five cycles, respectively. In comparison to other sweeteners, such as sucrose, fructose is considered as a healthy alternative. The present study demonstrated the use of immobilized exo-inulinase in continuous generation of fructose from some underutilized plant sources that can be used in food industry. PRACTICAL APPLICATION: Thermostable exo-inulinase produced by A. fumigatus was immobilized on calcium alginate matrix and was employed for continuous hydrolysis of chicory juice and dandelion root extract for generation of fructose syrup.
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Affiliation(s)
- Hemant Kumar Rawat
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar (A Central University), Madhya Pradesh, India
| | - Hemant Soni
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar (A Central University), Madhya Pradesh, India
- Division of Microbiology, Central Ayurveda Research Institute (CARI), Jhansi, Uttar Pradesh, India
| | - Rahul Kumar Suryawanshi
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar (A Central University), Madhya Pradesh, India
| | - Ritumbhara Choukade
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar (A Central University), Madhya Pradesh, India
| | - Bhanu Pratap Prajapati
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar (A Central University), Madhya Pradesh, India
| | - Naveen Kango
- Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya, Sagar (A Central University), Madhya Pradesh, India
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14
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Huang Y, Li L, Chi Y, Sha Y, Wang R, Xu Z, Xu X, Li S, Gao Z, Xu H. Fusion and secretory expression of an exo-inulinase and a d-allulose 3-epimerase to produce d-allulose syrup from inulin. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2021; 101:693-702. [PMID: 32700446 DOI: 10.1002/jsfa.10682] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Revised: 07/16/2020] [Accepted: 07/22/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND This study developed a feasible catalytic method for d-allulose syrup production using a fusion enzyme, either in free or immobilized form, through hydrolysis of inulin extracted from Jerusalem artichoke tubers. RESULTS d-Allulose 3-epimerase (DAE) was actively expressed in secretory form by fusing with the extracellular exo-inulinase CSCA in Escherichia coli BL21 (DE3). The best linker ligating the two enzymes was a flexible peptide containing 12 residues (GSAGSAAGSGEF). At 55 °C and pH 8.0, and as with the addition of 1 mmol L-1 Mn2+ , the CSCA-linkerE-DAE fusion enzyme obtained through high cell-density cultivation displayed a maximal exo-inulinase activity of 21.8 U mg-1 and resulted in a yield of 6.3 g L-1 d-allulose and 39.2 g L-1 d-fructose using 60 g L-1 inulin as the raw material. Catechol-modified alginate with titanium ions (Alg(Ti)PDA) was found to be a promising immobilization material for the fusion enzyme. After conversion for 8 days, the Alg(Ti)PDA-immobilized CSCA-linkerE-DAE (8 U g-1 ) completed 24 reaction cycles and retained over 80% of its original activity. Each reaction obtained an average of 19.8 g L-1 d-allulose and 32.7 g L-1 D-fructose from 60 g L-1 inulin. CONCLUSION This study shed light on a feasible and cost-effective approach for the production of syrup containing d-allulose and D-fructose with inulin as the raw material via the use of a CSCA and DAE fusion enzyme. This syrup is of added value as a functional sweetener. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Yueyuan Huang
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Liangfei Li
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Yaowei Chi
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Yuanyuan Sha
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Rui Wang
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Zheng Xu
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Xiaoqi Xu
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Sha Li
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Zhen Gao
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Hong Xu
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
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15
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Optimization of inulinase production by a newly isolated Penicillium amphipolaria strain using solid-state fermentation of hardy sugarcane stems. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2020.101875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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16
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Prakash Kamble P, Shivaji Suryawanshi S, Vishnu Kore M, Irani N, Prafulla Jadhav J, Chand Attar Y. Bioconversion of Weedy Waste into Sugary Wealth. Microorganisms 2020. [DOI: 10.5772/intechopen.91316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
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17
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Germec M, Gürler HN, Ozcan A, Erkan SB, Karahalil E, Turhan I. Medium optimization and kinetic modeling for the production of Aspergillus niger inulinase. Bioprocess Biosyst Eng 2019; 43:217-232. [DOI: 10.1007/s00449-019-02219-1] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Accepted: 09/16/2019] [Indexed: 11/25/2022]
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18
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Yousefi-Mokri M, Sharafi A, Rezaei S, Sadeghian-Abadi S, Imanparast S, Mogharabi-Manzari M, Amanzadeh Y, Faramarzi MA. Enzymatic hydrolysis of inulin by an immobilized extremophilic inulinase from the halophile bacterium Alkalibacillus filiformis. Carbohydr Res 2019; 483:107746. [DOI: 10.1016/j.carres.2019.107746] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 07/12/2019] [Accepted: 07/12/2019] [Indexed: 01/12/2023]
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19
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Identification, soluble expression, and characterization of a novel endo-inulinase from Lipomyces starkeyi NRRL Y-11557. Int J Biol Macromol 2019; 137:537-544. [DOI: 10.1016/j.ijbiomac.2019.06.096] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2019] [Revised: 06/12/2019] [Accepted: 06/13/2019] [Indexed: 01/13/2023]
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20
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Germec M, Turhan I. Evaluation of carbon sources for the production of inulinase by Aspergillus niger A42 and its characterization. Bioprocess Biosyst Eng 2019; 42:1993-2005. [PMID: 31414183 DOI: 10.1007/s00449-019-02192-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 08/07/2019] [Indexed: 11/30/2022]
Abstract
Inulinases are used for the production of high-fructose syrup and fructooligosaccharides, and are widely utilized in food and pharmaceutical industries. In this study, different carbon sources were screened for inulinase production by Aspergillus niger in shake flask fermentation. Optimum working conditions of the enzyme were determined. Additionally, some properties of produced enzyme were determined [activation (Ea)/inactivation (Eia) energies, Q10 value, inactivation rate constant (kd), half-life (t1/2), D value, Z value, enthalpy (ΔH), free energy (ΔG), and entropy (ΔS)]. Results showed that sugar beet molasses (SBM) was the best in the production of inulinase, which gave 383.73 U/mL activity at 30 °C, 200 rpm and initial pH 5.0 for 10 days with 2% (v/v) of the prepared spore solution. Optimum working conditions were 4.8 pH, 60 °C, and 10 min, which yielded 604.23 U/mL, 1.09 inulinase/sucrase ratio, and 2924.39 U/mg. Additionally, Ea and Eia of inulinase reaction were 37.30 and 112.86 kJ/mol, respectively. Beyond 60 °C, Q10 values of inulinase dropped below one. At 70 and 80 °C, t1/2 of inulinase was 33.6 and 7.2 min; therefore, inulinase is unstable at high temperatures, respectively. Additionally, t1/2, D, ΔH, ΔG values of inulinase decreased with the increase in temperature. Z values of inulinase were 7.21 °C. Negative values of ΔS showed that enzymes underwent a significant process of aggregation during denaturation. Consequently, SBM is a promising carbon source for inulinase production by A. niger. Also, this is the first report on the determination of some properties of A. niger A42 (ATCC 204,447) inulinase.
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Affiliation(s)
- Mustafa Germec
- Department of Food Engineering, Akdeniz University, 07058, Antalya, Turkey
| | - Irfan Turhan
- Department of Food Engineering, Akdeniz University, 07058, Antalya, Turkey.
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21
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Enzymatic preparation of fructooligosaccharides-rich burdock syrup with enhanced antioxidative properties. ELECTRON J BIOTECHN 2019. [DOI: 10.1016/j.ejbt.2019.04.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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22
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Mao W, Han Y, Wang X, Zhao X, Chi Z, Chi Z, Liu G. A new engineered endo-inulinase with improved activity and thermostability: Application in the production of prebiotic fructo-oligosaccharides from inulin. Food Chem 2019; 294:293-301. [PMID: 31126466 DOI: 10.1016/j.foodchem.2019.05.062] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 04/15/2019] [Accepted: 05/07/2019] [Indexed: 12/18/2022]
Abstract
To construct a high-performance engineered endo-inulinase for fructo-oligosaccharides (FOS) production from inulin, an inulin binding module (IBM) was fused into either N- or C-terminal of an endo-inulinase. After heterologous expression, purification and characterization, the C-terminal fusion one (Eninu-IBM) with better activity, thermostability and inulin binding ability was employed for high-temperature in situ inulin hydrolysis in a 10-L fermentor. During this process, Eninu-IBM was first efficiently produced by the yeast cells at 28 °C for 96 h, and subsequently 1600 g unsterilized inulin per liter fermentation liquor was directly supplemented into the bioreactor for FOS production at 60 °C for 2 h. Finally, high purity of FOS (91.4%) were obtained with FOS titer, yield and productivity of 717.3 g/L, 0.912 gFOS/gInulin and 358.6 g/L/h, respectively. The in vitro prebiotic assay indicated that the final FOS products with main polymerization degrees of 3-5 were preferably fermented by beneficial bifidobacteria and lactobacilli.
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Affiliation(s)
- Weian Mao
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Yaozu Han
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Xiaoxiang Wang
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Xiaoxue Zhao
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Zhe Chi
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
| | - Zhenimg Chi
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
| | - Guanglei Liu
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China.
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23
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Sakibaev FA, Holyavka MG, Makin SM, Artyukhov VG. An In silico Search for the Sites of Potential Binding with Charged and Hydrophobic Carriers in the Molecules of Endoinulinase from Aspergillus ficuum and Exoinulinase from Aspergillus awamori. Biophysics (Nagoya-shi) 2019. [DOI: 10.1134/s0006350919030199] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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24
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Choukade R, Kango N. Characterization of a mycelial fructosyltransferase from Aspergillus tamarii NKRC 1229 for efficient synthesis of fructooligosaccharides. Food Chem 2019; 286:434-440. [PMID: 30827630 DOI: 10.1016/j.foodchem.2019.02.025] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Revised: 02/04/2019] [Accepted: 02/06/2019] [Indexed: 01/09/2023]
Abstract
An efficient system for biotransformation of sucrose to fructooligosaccharides (FOS) was obtained using Aspergillus tamarii NKRC 1229 mycelial fructosyltransferase (m-FTase). Zymographic analysis confirmed mycelial localization of the FTase (36 U/g) and lyophilized fungal pellets were used for bioconversion. m-FTase had molecular weight ∼75 kDa with optimum activity at pH 7.0 and 20 °C. FOS production after parametric optimization (sucrose - 50% w/v, m-FTase dose - 4.5% w/v, inoculum age - 48 h and incubation time - 24 h) reached 325 g/L (55% yield) with 14% residual sucrose, 25% glucose and 6% fructose. FTase activity was enhanced after pre-treatment with organic solvents and SDS. FOS was purified in a single step using gel filtration matrix, Bio-Gel P2. FOS was characterized using Diffusion ordered spectroscopy-Nuclear Magnetic Resonance (1H DOSY-NMR) and Fourier-transform infrared spectroscopy (FTIR). Continuous generation of FOS was achieved using recyclable mycelia upto 10 consecutive cycles.
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Affiliation(s)
- Ritumbhara Choukade
- Enzyme Technology and Molecular Catalysis Laboratory, Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar, Madhya Pradesh 470003, India.
| | - Naveen Kango
- Enzyme Technology and Molecular Catalysis Laboratory, Department of Microbiology, Dr. Harisingh Gour Vishwavidyalaya (A Central University), Sagar, Madhya Pradesh 470003, India.
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25
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Singh RS, Singh T, Larroche C. Biotechnological applications of inulin-rich feedstocks. BIORESOURCE TECHNOLOGY 2019; 273:641-653. [PMID: 30503580 DOI: 10.1016/j.biortech.2018.11.031] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Revised: 11/05/2018] [Accepted: 11/08/2018] [Indexed: 06/09/2023]
Abstract
Inulin is a naturally occurring second largest storage polysaccharide with a wide range of applications in pharmaceutical and food industries. It is a robust polysaccharide which consists of a linear chain of β-2, 1-linked-d-fructofuranose molecules terminated with α-d-glucose moiety at the reducing end. It is present in tubers, bulbs and tuberous roots of more than 36,000 plants belonging to both monocotyledonous and dicotyledonous families. Jerusalem artichoke, chicory, dahlia, asparagus, etc. are important inulin-rich plants. Inulin is a potent substrate and inducer for the production of inulinases. Inulin/inulin-rich feedstocks can be used for the production of fructooligosaccharides and high-fructose syrup. Additionally, inulin-rich feedstocks can also be exploited for the production of other industrially important products like acetone, butanol, bioethanol, single cell proteins, single cell oils, 2, 3-butanediol, sorbitol, mannitol, etc. Current review highlights the biotechnological potential of inulin-rich feedstocks for the production of various industrially important products.
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Affiliation(s)
- R S Singh
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala 147 002, Punjab, India.
| | - Taranjeet Singh
- Carbohydrate and Protein Biotechnology Laboratory, Department of Biotechnology, Punjabi University, Patiala 147 002, Punjab, India
| | - Christian Larroche
- Université Clermont Auvergne, Institut Pascal, UMR, CNRS 6602, and Labex, IMobS3, 4 Avenue Blaise Pascal, TSA 60026, CS 60026, F-63178 Aubiere Cedex, France
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26
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Das D, Bhat M R, Selvaraj R. Review of inulinase production using solid-state fermentation. ANN MICROBIOL 2019. [DOI: 10.1007/s13213-019-1436-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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27
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Functional analysis of Mig1 and Rag5 as expressional regulators in thermotolerant yeast Kluyveromyces marxianus. Appl Microbiol Biotechnol 2018; 103:395-410. [DOI: 10.1007/s00253-018-9462-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 07/30/2018] [Accepted: 10/09/2018] [Indexed: 11/30/2022]
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28
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Zheng Z, Xu Q, Liu P, Zhou F, Ouyang J. Enhanced Inulin Saccharification by Self-Produced Inulinase from a Newly Isolated Penicillium sp. and its Application in D-Lactic Acid Production. Appl Biochem Biotechnol 2018; 186:122-131. [PMID: 29524039 DOI: 10.1007/s12010-018-2730-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2018] [Accepted: 02/26/2018] [Indexed: 11/26/2022]
Abstract
In order to find an alternative for commercial inulinase, a strain XL01 identified as Penicillium sp. was screened for inulinase production. The broth after cultivated was centrifuged, filtered, and used as crude enzyme for the following saccharification. At pH 5.0 and 50 °C, the crude enzyme released 84.9 g/L fructose and 20.7 g/L glucose from 120 g/L inulin in 72 h. In addition, simultaneous saccharification and fermentation of chicory flour for D-lactic acid production was carried out using the self-produced crude inulinase and Lactobacillus bulgaricus CGMCC 1.6970. A high D-lactic acid titer and productivity of 122.0 g/L and 1.69 g/(L h) was achieved from 120 g/L chicory flour in 72 h. The simplicity for inulinase production and the high efficiency for D-lactic acid fermentation provide a perspective and profitable industrial biotechnology for utilization of the inulin-rich biomass.
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Affiliation(s)
- Zhaojuan Zheng
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing, 210037, People's Republic of China
- College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, People's Republic of China
| | - Qianqian Xu
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing, 210037, People's Republic of China
| | - Peng Liu
- College of Forestry, Nanjing Forestry University, Nanjing, 210037, People's Republic of China
| | - Fan Zhou
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing, 210037, People's Republic of China
| | - Jia Ouyang
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing, 210037, People's Republic of China.
- College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, People's Republic of China.
- Key Laboratory of Forest Genetics and Biotechnology of the Ministry of Education, Nanjing, 210037, People's Republic of China.
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Chikkerur J, Samanta AK, Dhali A, Kolte AP, Roy S, Maria P. In Silico evaluation and identification of fungi capable of producing endo-inulinase enzyme. PLoS One 2018; 13:e0200607. [PMID: 30001376 PMCID: PMC6042768 DOI: 10.1371/journal.pone.0200607] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Accepted: 06/29/2018] [Indexed: 11/28/2022] Open
Abstract
The enzyme endo-inulinase hydrolyzes inulin to short chain fructooligosaccharides (FOS) that are potential prebiotics with many health promoting benefits. Although the raw materials for inulin production are inexpensive and readily available, commercial production of FOS from inulin is limited due to inadequate availability of the enzyme source. This study aimed to identify the fungi capable of producing endo-inulinase based on the in silico analysis of proteins retrieved from non-redundant protein sequence database. The endo-inulinase of Aspergillus ficuum was used as reference sequence. The amino acid sequences with >90% sequence coverage, belonging to different fungi were retrieved from the database and used for constructing three-dimensional (3D) protein models using SWISS-MODEL and Bagheerath H. The 3D models of comparable quality as that of the reference endo-inulinase were selected based on QMEAN Z score. The selected models were evaluated and validated for different structural and functional qualities using Pro-Q, ProSA, PSN-QA, VERIFY-3D, PROCHECK, PROTSAV metaserver, STRAP, molecular docking, and molecular dynamic simulation analyses. A total of 230 proteins belonging to 53 fungal species exhibited sequence coverage >90%. Sixty one protein sequences with >60% sequence identity were modeled as endo-inulinase with higher QMEAN Z Score. The evaluations and validations of these 61 selected models for different structural and functional qualities revealed that 60 models belonging to 22 fungal species exhibited native like structure and unique motifs and residues as that of the reference endo-inulinase. Further, these models also exhibited similar kind of interaction between the active site around the conserved glutamate residue and substrate as that of the reference endo-inulinase. In conclusion, based on the current study, 22 fungal species could be identified as endo-inulinase producer. Nevertheless, further biological assessment of their capability for producing endo-inulinase is imminent if they are to be used for commercial endo-inulinase production for application in FOS industry.
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Affiliation(s)
- Jayaram Chikkerur
- Animal Nutrition Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
- Department of Microbiology, School of Sciences, Jain University, Bengaluru, Karnataka, India
- * E-mail:
| | - Ashis Kumar Samanta
- Animal Nutrition Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - Arindam Dhali
- Bioenergetics and Environmental Sciences Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - Atul Purushottam Kolte
- Animal Nutrition Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - Sohini Roy
- Animal Nutrition Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
- Department of Microbiology, School of Sciences, Jain University, Bengaluru, Karnataka, India
| | - Pratheepa Maria
- Division of Genomic Resources, ICAR-National Bureau of Agricultural Insect Resources, Bengaluru, Karnataka, India
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Ribeiro GCDA, Fernandes P, de Assis SA. Production, characterization, and immobilization of inulinase produced by Pseudozyma sp. (CCMB 306). CHEM ENG COMMUN 2018. [DOI: 10.1080/00986445.2018.1430575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Geise Camila de Araujo Ribeiro
- Enzymology and Fermentation Technology Laboratory, Health Department, State University of Feira de Santana, Feira de Santana, Bahia, Brazil
| | - Pedro Fernandes
- Faculty of Engineering, Lusófona University, Lisboa, Portugal
- Department of Bioengineering, IBB - Institute for Bioengineering and Biosciences, Instituto Superior Técnico, University of Lisbon, Lisboa, Portugal
| | - Sandra Aparecida de Assis
- Enzymology and Fermentation Technology Laboratory, Health Department, State University of Feira de Santana, Feira de Santana, Bahia, Brazil
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Afriat-Jurnou L, Cohen R, Paluy I, Ben-Adiva R, Yadid I. Directed evolution of an endoinulinase from Talaromyces purpureogenus
toward efficient production of inulooligosaccharides. Biotechnol Prog 2018; 34:868-877. [DOI: 10.1002/btpr.2618] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Revised: 01/25/2018] [Indexed: 12/17/2022]
Affiliation(s)
- Livnat Afriat-Jurnou
- MIGAL- Galilee Research Institute; Kiryat-Shmona 11016 Israel
- Faculty of Sciences and Technology; Tel-Hai Academic College; Upper Galilee 12208 Israel
| | - Rami Cohen
- MIGAL- Galilee Research Institute; Kiryat-Shmona 11016 Israel
| | - Irina Paluy
- MIGAL- Galilee Research Institute; Kiryat-Shmona 11016 Israel
| | - Ran Ben-Adiva
- MIGAL- Galilee Research Institute; Kiryat-Shmona 11016 Israel
| | - Itamar Yadid
- MIGAL- Galilee Research Institute; Kiryat-Shmona 11016 Israel
- Faculty of Sciences and Technology; Tel-Hai Academic College; Upper Galilee 12208 Israel
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de Beer DM, Botes M, Cloete TE. The microbial community of a biofilm contact reactor for the treatment of winery wastewater. J Appl Microbiol 2018; 124:598-610. [PMID: 29193551 DOI: 10.1111/jam.13654] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Revised: 10/26/2017] [Accepted: 11/02/2017] [Indexed: 12/01/2022]
Abstract
AIMS To utilize a three-tiered approach to provide insight into the microbial community structure, the spatial distribution and the metabolic capabilities of organisms of a biofilm in the two towers of a high-rate biological contact reactor treating winery wastewater. METHODS AND RESULTS Next-generation sequencing indicated that bacteria primarily responsible for the removal of carbohydrates, sugars and alcohol were more abundant in tower 1 than tower 2 while nitrifying and denitrifying bacteria were more abundant in tower 2. Yeast populations differed in each tower. Fluorescent in situ hybridization coupled with confocal microscopy showed distribution of organisms confirming an oxygen gradient across the biofilm depth. The Biolog system (ECO plates) specified the different carbon-metabolizing profiles of the two biofilms. CONCLUSIONS The three-tiered approach confirmed that the addition of a second subunit to the bioreactor, expanded the treatment capacity by augmenting the microbial and metabolic diversity of the system, improving the treatment scope of the system. SIGNIFICANCE AND IMPACT OF THE STUDY A three-tiered biofilm analysis provided data required to optimize the design of a bioreactor to provide favourable conditions for the development of a microbial consortium, which has optimal waste removal properties for the treatment requirements at hand.
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Affiliation(s)
- D M de Beer
- Department of Biochemistry, Stellenbosch University, Stellenbosch, South Africa
| | - M Botes
- Department of Microbiology, Stellenbosch University, Stellenbosch, South Africa
| | - T E Cloete
- Department of Microbiology, Stellenbosch University, Stellenbosch, South Africa
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High-efficient production of fructo-oligosaccharides from inulin by a two-stage bioprocess using an engineered Yarrowia lipolytica strain. Carbohydr Polym 2017; 173:592-599. [DOI: 10.1016/j.carbpol.2017.06.043] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2017] [Revised: 06/09/2017] [Accepted: 06/10/2017] [Indexed: 01/12/2023]
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Kuanyshev N, Adamo GM, Porro D, Branduardi P. The spoilage yeastZygosaccharomyces bailii: Foe or friend? Yeast 2017; 34:359-370. [DOI: 10.1002/yea.3238] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Revised: 05/12/2017] [Accepted: 05/15/2017] [Indexed: 12/30/2022] Open
Affiliation(s)
- Nurzhan Kuanyshev
- Department of Biotechnology and Biosciences; University of Milano-Bicocca; Piazza della Scienza 2 Milano 20126 Italy
| | - Giusy M. Adamo
- Department of Biotechnology and Biosciences; University of Milano-Bicocca; Piazza della Scienza 2 Milano 20126 Italy
| | - Danilo Porro
- Department of Biotechnology and Biosciences; University of Milano-Bicocca; Piazza della Scienza 2 Milano 20126 Italy
| | - Paola Branduardi
- Department of Biotechnology and Biosciences; University of Milano-Bicocca; Piazza della Scienza 2 Milano 20126 Italy
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Hughes SR, Qureshi N, López-Núñez JC, Jones MA, Jarodsky JM, Galindo-Leva LÁ, Lindquist MR. Utilization of inulin-containing waste in industrial fermentations to produce biofuels and bio-based chemicals. World J Microbiol Biotechnol 2017; 33:78. [PMID: 28341907 DOI: 10.1007/s11274-017-2241-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2016] [Accepted: 03/06/2017] [Indexed: 12/18/2022]
Abstract
Inulins are polysaccharides that belong to an important class of carbohydrates known as fructans and are used by many plants as a means of storing energy. Inulins contain 20 to several thousand fructose units joined by β-2,1 glycosidic bonds, typically with a terminal glucose unit. Plants with high concentrations of inulin include: agave, asparagus, coffee, chicory, dahlia, dandelion, garlic, globe artichoke, Jerusalem artichoke, jicama, onion, wild yam, and yacón. To utilize inulin as its carbon and energy source directly, a microorganism requires an extracellular inulinase to hydrolyze the glycosidic bonds to release fermentable monosaccharides. Inulinase is produced by many microorganisms, including species of Aspergillus, Kluyveromyces, Penicillium, and Pseudomonas. We review various inulinase-producing microorganisms and inulin feedstocks with potential for industrial application as well as biotechnological efforts underway to develop sustainable practices for the disposal of residues from processing inulin-containing crops. A multi-stage biorefinery concept is proposed to convert cellulosic and inulin-containing waste produced at crop processing operations to valuable biofuels and bioproducts using Kluyveromyces marxianus, Yarrowia lipolytica, Rhodotorula glutinis, and Saccharomyces cerevisiae as well as thermochemical treatments.
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Affiliation(s)
- Stephen R Hughes
- Renewable Product Technology Research Unit, United States Department of Agriculture (USDA), Agricultural Research Service (ARS), National Center for Agricultural Utilization Research (NCAUR), 1815 North University Street, Peoria, IL, 61604, USA.
| | - Nasib Qureshi
- Bioenergy Research Unit, USDA, ARS, NCAUR, 1815 North University Street, Peoria, IL, 61604, USA
| | - Juan Carlos López-Núñez
- National Coffee Research Centre (Cenicafe), National Federation of Coffee Growers of Colombia (FNC), Cenicafé Planalto Km 4 vía Antigua Chinchiná, Manizales, Caldas, Colombia
| | - Marjorie A Jones
- Department of Chemistry, Illinois State University, Normal, IL, 61790, USA
| | - Joshua M Jarodsky
- Department of Chemistry, Illinois State University, Normal, IL, 61790, USA
| | - Luz Ángela Galindo-Leva
- National Coffee Research Centre (Cenicafe), National Federation of Coffee Growers of Colombia (FNC), Cenicafé Planalto Km 4 vía Antigua Chinchiná, Manizales, Caldas, Colombia
| | - Mitchell R Lindquist
- Renewable Product Technology Research Unit, United States Department of Agriculture (USDA), Agricultural Research Service (ARS), National Center for Agricultural Utilization Research (NCAUR), 1815 North University Street, Peoria, IL, 61604, USA
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Rawat HK, Soni H, Kango N, Kumar CG. Continuous generation of fructose from Taraxacum officinale tap root extract and inulin by immobilized inulinase in a packed-bed reactor. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2017. [DOI: 10.1016/j.bcab.2016.11.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Riquelme C, Enes Dapkevicius MDL, Miller AZ, Charlop-Powers Z, Brady S, Mason C, Cheeptham N. Biotechnological potential of Actinobacteria from Canadian and Azorean volcanic caves. Appl Microbiol Biotechnol 2016; 101:843-857. [DOI: 10.1007/s00253-016-7932-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Revised: 09/07/2016] [Accepted: 10/12/2016] [Indexed: 12/26/2022]
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Endoinulinase production by a new endoinulinase producer Aspergillus tritici BGPUP6 using a low cost substrate. Int J Biol Macromol 2016; 92:1113-1122. [DOI: 10.1016/j.ijbiomac.2016.08.026] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Revised: 08/03/2016] [Accepted: 08/08/2016] [Indexed: 11/20/2022]
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Deletion of loop fragment adjacent to active site diminishes the stability and activity of exo-inulinase. Int J Biol Macromol 2016; 92:1234-1241. [DOI: 10.1016/j.ijbiomac.2016.08.039] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2016] [Revised: 08/04/2016] [Accepted: 08/11/2016] [Indexed: 11/20/2022]
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Holyavka M, Evstigneev M, Artyukhov V, Savin V. Development of heterogeneous preparation with inulinase for tubular reactor systems. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.molcatb.2016.03.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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43
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Holyavka M, Artyukhov V, Kovaleva T. Structural and functional properties of inulinases: A review. BIOCATAL BIOTRANSFOR 2016. [DOI: 10.1080/10242422.2016.1196486] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Zhou SH, Liu Y, Zhao YJ, Chi Z, Chi ZM, Liu GL. Enhanced exo-inulinase activity and stability by fusion of an inulin-binding module. Appl Microbiol Biotechnol 2016; 100:8063-74. [DOI: 10.1007/s00253-016-7587-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Revised: 04/24/2016] [Accepted: 04/28/2016] [Indexed: 01/14/2023]
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45
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Singh RS, Singh RP, Kennedy JF. Recent insights in enzymatic synthesis of fructooligosaccharides from inulin. Int J Biol Macromol 2016; 85:565-72. [DOI: 10.1016/j.ijbiomac.2016.01.026] [Citation(s) in RCA: 91] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Revised: 01/04/2016] [Accepted: 01/06/2016] [Indexed: 01/11/2023]
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Xu Y, Zheng Z, Xu Q, Yong Q, Ouyang J. Efficient Conversion of Inulin to Inulooligosaccharides through Endoinulinase from Aspergillus niger. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:2612-2618. [PMID: 26961750 DOI: 10.1021/acs.jafc.5b05908] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Inulooligosaccharides (IOS) represent an important class of oligosaccharides at industrial scale. An efficient conversion of inulin to IOS through endoinulinase from Aspergillus niger is presented. A 1482 bp codon optimized gene fragment encoding endoinulinase from A. niger DSM 2466 was cloned into pPIC9K vector and was transformed into Pichia pastoris KM71. Maximum activity of the recombinant endoinulinase, 858 U/mL, was obtained at 120 h of the high cell density fermentation process. The optimal conditions for inulin hydrolysis using the recombinant endoinulinase were investigated. IOS were harvested with a high concentration of 365.1 g/L and high yield up to 91.3%. IOS with different degrees of polymerization (DP, mainly DP 3-6) were distributed in the final reaction products.
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Affiliation(s)
| | | | | | | | - Jia Ouyang
- Key Laboratory of Forest Genetics & Biotechnology of the Ministry of Education , Nanjing, People's Republic of China
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Yao Z, Guo J, Tang W, Sun Z, Hou Y, Li X. Production of a single cyclic type of fructooligosaccharide structure by inulin-degrading Paenibacillus sp. LX16 newly isolated from Jerusalem artichoke root. Microb Biotechnol 2016; 9:419-29. [PMID: 26996537 PMCID: PMC4835578 DOI: 10.1111/1751-7915.12358] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2015] [Revised: 01/21/2016] [Accepted: 01/29/2016] [Indexed: 11/28/2022] Open
Abstract
A novel inulin‐degrading bacterium was isolated from a soil sample collected on Jerusalem artichoke roots. It is a Gram‐positive, aerobic, motile and central endospore‐forming straight rod, and exhibits phenotypic properties being consistent with its classification in the genus Paenibacillus. The predominant cellular fatty acids were anteiso‐C15:0, C16:0 and anteiso‐C17:0. This strain represents a novel species of the genus Paenibacillus on the basis of phenotypic data together with phylogenetic analysis, and it is here designated as LX16 and deposited in China centre for type collection, China (= CCTCC 2015256). Strain LX16 could produce a cyclofructooligosaccharide fructanotransferase catalysing the formation of one type of fructooligosaccharide (FOS) from inulin. The FOS was identified as a cyclofructooligosaccharide with a degree of polymerization of 6. Such homology in inulin degradation products may be beneficial for the functional FOS production.
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Affiliation(s)
- Zhihua Yao
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China
| | - Jiqiang Guo
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China
| | - Wenzhu Tang
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China
| | - Zhen Sun
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China
| | - Yingmin Hou
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China
| | - Xianzhen Li
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China
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48
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Rawat HK, Soni H, Treichel H, Kango N. Biotechnological potential of microbial inulinases: Recent perspective. Crit Rev Food Sci Nutr 2016; 57:3818-3829. [DOI: 10.1080/10408398.2016.1147419] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Hemant Kumar Rawat
- Department of Applied Microbiology and Biotechnology, Dr. Harisingh Gour University, Sagar (M.P.), India
| | - Hemant Soni
- Department of Applied Microbiology and Biotechnology, Dr. Harisingh Gour University, Sagar (M.P.), India
| | - Helen Treichel
- Universidade Federal da Fronteira Sul-Campus de Erechim, Erechim, Brazil
| | - Naveen Kango
- Department of Applied Microbiology and Biotechnology, Dr. Harisingh Gour University, Sagar (M.P.), India
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Yedahalli SS, Rehmann L, Bassi A. Expression of exo-inulinase gene from Aspergillus niger 12 in E. coli strain Rosetta-gami B (DE3) and its characterization. Biotechnol Prog 2016; 32:629-37. [PMID: 26833959 DOI: 10.1002/btpr.2238] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2014] [Revised: 01/27/2016] [Indexed: 11/08/2022]
Abstract
Inulin is a linear carbohydrate polymer of fructose subunits (2-60) with terminal glucose units, produced as carbon storage in selected plants. It cannot directly be taken up by most microorganisms due to its large size, unless prior hydrolysis through inulinase enzymes occurs. The hydrolyzed inulin can be taken up by microbes and/or recovered and used industrially for the production of high fructose syrup, inulo-oligosaccharides, biofuel, and nutraceuticals. Cell-free enzymatic hydrolysis would be desirable for industrial applications, hence the recombinant expression, purification and characterization of an Aspergillus niger derived exo-inulinase was investigated in this study. The eukaroyototic exo-inulinase of Aspergillus niger 12 has been expressed, for the first time, in an E. coli strain [Rosetta-gami B (DE3)]. The molecular weight of recombinant exo-inulinase was estimated to be ∼81 kDa. The values of Km and Vmax of the recombinant exo-inulinase toward inulin were 5.3 ± 1.1 mM and 402.1 ± 53.1 µmol min(-1) mg(-1) protein, respectively. Towards sucrose the corresponding values were 12.20 ± 1.6 mM and 902.8 ± 40.2 µmol min(-1) mg(-1) protein towards sucrose. The S/I ratio was 2.24 ± 0.7, which is in the range of native inulinase. The optimum temperature and pH of the recombinant exo-inulinase towards inulin was 55°C and 5.0, while they were 50°C and 5.5 towards sucrose. The recombinant exo-inulinase activity towards inulin was enhanced by Cu(2+) and reduced by Fe(2+) , while its activity towards sucrose was enhanced by Co(2+) and reduced by Zn(2+) . © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:629-637, 2016.
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Affiliation(s)
- Shreyas S Yedahalli
- Dept. of Chemical and Biochemical Engineering, University of Western Ontario, London, Ontario, N6A 5B9, Canada
| | - Lars Rehmann
- Dept. of Chemical and Biochemical Engineering, Faculty of Engineering, University of Western Ontario, London, Ontario, N6A 5B9, Canada
| | - Amarjeet Bassi
- Dept. of Chemical and Biochemical Engineering, Faculty of Engineering, University of Western Ontario, London, Ontario, N6A 5B9, Canada
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Shen J, Zhang R, Li J, Tang X, Li R, Wang M, Huang Z, Zhou J. Characterization of an exo-inulinase from Arthrobacter: a novel NaCl-tolerant exo-inulinase with high molecular mass. Bioengineered 2016; 6:99-105. [PMID: 25695343 DOI: 10.1080/21655979.2015.1019686] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
Abstract
A glycoside hydrolase family 32 exo-inulinase gene was cloned from Arthrobacter sp. HJ7 isolated from saline soil located in Heijing town. The gene encodes an 892-residue polypeptide with a calculated mass of 95.1 kDa and a high total frequency of amino acid residues G, A, and V (30.0%). Escherichia coli BL21 (DE3) cells were used as hosts to express the exo-inulinase gene. The recombinant exo-inulinase (rInuAHJ7) showed an apparently maximal activity at pH 5.0-5.5 and 40-45°C. The addition of 1.0 and 10.0 mM Zn(2+) and Pb(2+) had little or no effect on the enzyme activity. rInuAHJ7 exhibited good salt tolerance, retaining more than 98% inulinase activity at a concentration of 3.0%-20.0% (w/v) NaCl. Fructose was the main product of inulin, levan, and Jerusalem artichoke tubers hydrolyzed by the enzyme. The present study is the first to report the identification and characterization of an Arthrobacter sp exo-inulinase showing a high molecular mass of 95.1 kDa and NaCl tolerance. These results suggest that the exo-inulinase might be an alternative material for potential applications in processing seafood and other foods with high saline contents, such as marine algae, pickles, and sauces.
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Affiliation(s)
- Jidong Shen
- a Engineering Research Center of Sustainable Development and Utilization of Biomass Energy; Ministry of Education ; Yunnan Normal University ; Kunming , PR China
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