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Tang J, Han Y, Pei L, Gu W, Qiu R, Wang S, Ma Q, Gan Y, Tang M. Comparative analysis of the rhizosphere microbiome and medicinally active ingredients of Atractylodes lancea from different geographical origins. Open Life Sci 2023; 18:20220769. [PMID: 38027226 PMCID: PMC10668115 DOI: 10.1515/biol-2022-0769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 10/18/2023] [Accepted: 10/22/2023] [Indexed: 12/01/2023] Open
Abstract
This study aimed to explore the important role of the rhizosphere microbiome in the quality of Atractylodes lancea (Thunb.) DC. (A. lancea). The rhizosphere microbial community of A. lancea at two sampling sites was studied using metagenomic technology. The results of α-diversity analysis showed that the rhizosphere microbial richness and diversity were higher in the Maoshan area. The higher abundance of core microorganisms of the rhizosphere, especially Penicillium and Streptomyces, in the Maoshan area compared with those in the Yingshan area might be an important factor affecting the yield of A. lancea. Redundancy analysis illustrated that the available phosphorus had a significant effect on the rhizosphere microbial community structure of A. lancea. We also showed that the plant-microbe and microbe-microbe interactions were closer in the Maoshan area than in the Yingshan area, and Streptomyces were the main contributors to the potential functional difference between the two regions. A. lancea in the Maoshan area had a high content of atractylodin and atractylon, which might be related to the enhanced abundance of Streptomyces, Candidatus-Solibacter, and Frankia. Taken together, this study provided theoretical insights into the interaction between medicinal plants and the rhizosphere microbiome and provides a valuable reference for studying beneficial microbes of A. lancea.
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Affiliation(s)
- Junjie Tang
- School of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Qixia District, Jiangsu, Nanjing, 210023, China
| | - Yun Han
- Suzhou TCM Hospital Affiliated to Nanjing University of Chinese Medicine, Suzhou, 215002, China
| | - Lingfeng Pei
- School of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Qixia District, Jiangsu, Nanjing, 210023, China
| | - Wei Gu
- School of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Qixia District, Jiangsu, Nanjing, 210023, China
- Jiangsu Collaborative Innovation Center of Chinese Medicinal Resources Industrialization,
Nanjing, 210023, China
| | - Rongli Qiu
- School of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Qixia District, Jiangsu, Nanjing, 210023, China
| | - Sheng Wang
- State Key Laboratory of Dao-di Herbs, Beijng, 100700, China
| | - Qihan Ma
- Suzhou TCM Hospital Affiliated to Nanjing University of Chinese Medicine, Suzhou, 215002, China
| | - Yifu Gan
- School of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Qixia District, Jiangsu, Nanjing, 210023, China
| | - Min Tang
- School of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Qixia District, Jiangsu, Nanjing, 210023, China
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Tarasova EV, Luchnikova NA, Grishko VV, Ivshina IB. Actinomycetes as Producers of Biologically Active Terpenoids: Current Trends and Patents. Pharmaceuticals (Basel) 2023; 16:872. [PMID: 37375819 PMCID: PMC10301674 DOI: 10.3390/ph16060872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 06/04/2023] [Accepted: 06/05/2023] [Indexed: 06/29/2023] Open
Abstract
Terpenes and their derivatives (terpenoids and meroterpenoids, in particular) constitute the largest class of natural compounds, which have valuable biological activities and are promising therapeutic agents. The present review assesses the biosynthetic capabilities of actinomycetes to produce various terpene derivatives; reports the main methodological approaches to searching for new terpenes and their derivatives; identifies the most active terpene producers among actinomycetes; and describes the chemical diversity and biological properties of the obtained compounds. Among terpene derivatives isolated from actinomycetes, compounds with pronounced antifungal, antiviral, antitumor, anti-inflammatory, and other effects were determined. Actinomycete-produced terpenoids and meroterpenoids with high antimicrobial activity are of interest as a source of novel antibiotics effective against drug-resistant pathogenic bacteria. Most of the discovered terpene derivatives are produced by the genus Streptomyces; however, recent publications have reported terpene biosynthesis by members of the genera Actinomadura, Allokutzneria, Amycolatopsis, Kitasatosporia, Micromonospora, Nocardiopsis, Salinispora, Verrucosispora, etc. It should be noted that the use of genetically modified actinomycetes is an effective tool for studying and regulating terpenes, as well as increasing productivity of terpene biosynthesis in comparison with native producers. The review includes research articles on terpene biosynthesis by Actinomycetes between 2000 and 2022, and a patent analysis in this area shows current trends and actual research directions in this field.
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Affiliation(s)
- Ekaterina V. Tarasova
- Perm Federal Research Center, Ural Branch of the Russian Academy of Sciences, 13A Lenina Str., 614990 Perm, Russia; (N.A.L.); (V.V.G.); (I.B.I.)
| | - Natalia A. Luchnikova
- Perm Federal Research Center, Ural Branch of the Russian Academy of Sciences, 13A Lenina Str., 614990 Perm, Russia; (N.A.L.); (V.V.G.); (I.B.I.)
- Department of Microbiology and Immunology, Perm State University, 15 Bukirev Str., 614990 Perm, Russia
| | - Victoria V. Grishko
- Perm Federal Research Center, Ural Branch of the Russian Academy of Sciences, 13A Lenina Str., 614990 Perm, Russia; (N.A.L.); (V.V.G.); (I.B.I.)
| | - Irina B. Ivshina
- Perm Federal Research Center, Ural Branch of the Russian Academy of Sciences, 13A Lenina Str., 614990 Perm, Russia; (N.A.L.); (V.V.G.); (I.B.I.)
- Department of Microbiology and Immunology, Perm State University, 15 Bukirev Str., 614990 Perm, Russia
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Martínez-Treviño SH, Uc-Cetina V, Fernández-Herrera MA, Merino G. Prediction of Natural Product Classes Using Machine Learning and 13C NMR Spectroscopic Data. J Chem Inf Model 2020; 60:3376-3386. [DOI: 10.1021/acs.jcim.0c00293] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Saúl H. Martínez-Treviño
- Departamento de Fı́sica Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex, 97310 Mérida, Mexico
| | - Víctor Uc-Cetina
- Facultad de Matemáticas, Universidad Autónoma de Yucatán, Av. Industrias no contaminantes, S/N, 97119 Mérida, Yucatán, Mexico
| | - María A. Fernández-Herrera
- Departamento de Fı́sica Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex, 97310 Mérida, Mexico
| | - Gabriel Merino
- Departamento de Fı́sica Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex, 97310 Mérida, Mexico
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Yang ZD, Li ZJ, Zhao JW, Sun JH, Yang LJ, Shu ZM. Secondary Metabolites and PI3K Inhibitory Activity of Colletotrichum gloeosporioides, a Fungal Endophyte of Uncaria rhynchophylla. Curr Microbiol 2019; 76:904-908. [PMID: 31104137 DOI: 10.1007/s00284-019-01707-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Accepted: 05/13/2019] [Indexed: 10/26/2022]
Abstract
In the present study, nine compounds (1-9) were isolated from Colletotrichum gloeosporioides (an endophytic fungus from Uncaria rhynchophylla) which was cultured in wheat bran medium. Their structures were elucidated as 4-Epi-14-hydroxy-10, 23-dihydro-24, 25-dehydroaflavinine (1), 10, 23-Dihydro-24,25 -dehydro-21-oxoaflavinine (2), Ergosterol (3), Ergosterol peroxide (4), Mellein (5), 4, 5-dihydroblumenol A (6), Colletotrichine A (7), Cyclo(L-leucyl-L-leucyl) (8), and Brevianamide F (9) based on NMR spectral data, as well as comparing with previous literature data. This is the first report about the isolation of compounds 1-2, 6, and 8-9 from Colletotrichum genus. All compounds were tested for their phosphoinositide 3-kinase (PI3Kα) inhibitory activity. Compounds 8 and 9 showed potent PI3K α inhibitory activity with IC50 values of 38.1 and 4.8 µM, respectively, while the other compounds showed very weak activity at a concentration of 20 µg/mL.
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Affiliation(s)
- Zhong-Duo Yang
- School of Life Science and Engineering, Lanzhou University of Technology, 287 Lan Gong Pin Road, Qi Li He Block, Lanzhou, 730050, Gansu Province, People's Republic of China.
| | - Zhi-Jie Li
- School of Life Science and Engineering, Lanzhou University of Technology, 287 Lan Gong Pin Road, Qi Li He Block, Lanzhou, 730050, Gansu Province, People's Republic of China
| | - Jun-Wen Zhao
- School of Life Science and Engineering, Lanzhou University of Technology, 287 Lan Gong Pin Road, Qi Li He Block, Lanzhou, 730050, Gansu Province, People's Republic of China
| | - Jian-Hui Sun
- School of Life Science and Engineering, Lanzhou University of Technology, 287 Lan Gong Pin Road, Qi Li He Block, Lanzhou, 730050, Gansu Province, People's Republic of China
| | - Li-Jun Yang
- School of Life Science and Engineering, Lanzhou University of Technology, 287 Lan Gong Pin Road, Qi Li He Block, Lanzhou, 730050, Gansu Province, People's Republic of China
| | - Zong-Mei Shu
- School of Life Science and Engineering, Lanzhou University of Technology, 287 Lan Gong Pin Road, Qi Li He Block, Lanzhou, 730050, Gansu Province, People's Republic of China.,The Provincial Education Key Laboratory of Screening, Evaluation and Advanced Processing of Traditional Chinese Medicine and Tibetan Medicine, School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, 730050, People's Republic of China
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