1
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Kim EJ, Doh H, Yang J, Eyun SI. The occurrence of positive selection on BicA transporter of Microcystis aeruginosa. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 283:116795. [PMID: 39083868 DOI: 10.1016/j.ecoenv.2024.116795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 07/10/2024] [Accepted: 07/24/2024] [Indexed: 08/02/2024]
Abstract
The rapid growth of cyanobacteria, particularly Microcystis aeruginosa, poses a significant threat to global water security. The proliferation of toxic Microcystis aeruginosa raises concerns due to its potential harm to human health and socioeconomic impacts. Dense blooms contribute to spatiotemporal inorganic carbon depletion, promoting interest in the roles of carbon-concentrating mechanisms (CCMs) for competitive carbon uptake. Despite the importance of HCO3- transporters, genetic evaluations and functional predictions in M. aeruginosa remain insufficient. In this study, we explored the diversity of HCO3- transporters in the genomes of 46 strains of M. aeruginosa, assessing positive selection for each. Intriguingly, although the Microcystis BicA transporter became a partial gene in 23 out of 46 genomic strains, we observed significant positive sites. Structural analyses, including predicted 2D and 3D models, confirmed the structural conservation of the Microcystis BicA transporter. Our findings suggest that the Microcystis BicA transport likely plays a crucial role in competitive carbon uptake, emphasizing its ecological significance. The ecological function of the Microcystis BicA transport in competitive growth during cyanobacterial blooms raises important questions. Future studies require experimental confirmation to better understand the role of the Microcysits BicA transporter in cyanobacterial blooms dynamics.
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Affiliation(s)
- Eun-Jeong Kim
- Department of Life Science, Chung-Ang University, Seoul 06974, Korea
| | - Huijeong Doh
- Department of Life Science, Chung-Ang University, Seoul 06974, Korea
| | - Jihye Yang
- Department of Life Science, Chung-Ang University, Seoul 06974, Korea
| | - Seong-Il Eyun
- Department of Life Science, Chung-Ang University, Seoul 06974, Korea.
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2
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Bi X, Wei P, Wang Q, Duan L, Dai W, Chen R, Zhang D. Duplex Real-Time Fluorescent Quantitative PCR Assays for the Detection of Toxigenic Microcystis Genotypes Based on SNP/InDel Variation in mcy Gene Cluster. Curr Microbiol 2024; 81:275. [PMID: 39020143 DOI: 10.1007/s00284-024-03797-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 07/03/2024] [Indexed: 07/19/2024]
Abstract
In this study, the toxigenic characteristics of 14 strains of Microcystis were analyzed, and single nucleotide polymorphism (SNP) and insertion/deletion (InDel) loci in microcystin synthetase (mcy) gene clusters were screened. Based on SNP and InDel loci associated with the toxigenic characteristics, primers and TaqMan or Cycling fluorescent probes were designed to develop duplex real-time fluorescent quantitative PCR (FQ-PCR) assays. After evaluating specificity and sensitivity, these assays were applied to detect the toxigenic Microcystis genotypes in a shrimp pond where Microcystis blooms occurred. The results showed a total of 2155 SNP loci and 66 InDel loci were obtained, of which 12 SNP loci and 5 InDel loci were associated with the toxigenic characteristics. Three duplex real-time FQ-PCR assays were developed, each of which could quantify two genotypes of toxigenic Microcystis. These FQ-PCR assays were highly specific, and two Cycling assays were more sensitive than TaqMan assay. In the shrimp pond, six genotypes of toxigenic Microcystis were detected using the developed FQ-PCR assays, indicating that above genotyping assays have the potential for quantitative analysis of the toxigenic Microcystis genotypes in natural water.
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Affiliation(s)
- Xiangdong Bi
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, College of Fishery, Tianjin Agricultural University, Tianjin, China
| | - Peng Wei
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, College of Fishery, Tianjin Agricultural University, Tianjin, China
| | - Qian Wang
- Institute of Crop Germplasm and Biotechnology, Tianjin Academy of Agricultural Sciences, Tianjin, China
| | - Lijin Duan
- Institute of Crop Germplasm and Biotechnology, Tianjin Academy of Agricultural Sciences, Tianjin, China
| | - Wei Dai
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, College of Fishery, Tianjin Agricultural University, Tianjin, China.
| | - Rui Chen
- Institute of Crop Germplasm and Biotechnology, Tianjin Academy of Agricultural Sciences, Tianjin, China
| | - Dajuan Zhang
- Key Laboratory of Aquatic-Ecology and Aquaculture of Tianjin, College of Fishery, Tianjin Agricultural University, Tianjin, China
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3
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Yang C, Ding M, Hou K, Feng J, Li X, Pan X, Yang C, Zhang X, Guo J, Dai X. Dissolved organic matter, calcium ion and extracellular polymeric substances on living associated bacteria of Microcystis colony are crucial for unicellular Microcystis to efficiently form colonies. JOURNAL OF HAZARDOUS MATERIALS 2024; 471:134352. [PMID: 38677120 DOI: 10.1016/j.jhazmat.2024.134352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Revised: 03/30/2024] [Accepted: 04/17/2024] [Indexed: 04/29/2024]
Abstract
Microcystis typically forms colonies under natural conditions, which contributes to occurrence and prevalence of algal blooms. The colonies consist of Microcystis and associated bacteria (AB), embedded in extracellular polymeric substances (EPS). Previous studies indicate that AB can induce Microcystis to form colonies, however the efficiency is generally low and results in a uniform morphotype. In this study, by using filtrated natural water, several AB strains induced unicellular M. aeruginosa to form colonies resembling several Microcystis morphotypes. The mechanisms were investigated with Methylobacterium sp. Z5. Ca2+ was necessary for Z5 to induce Microcystis to form colonies, while dissolved organic matters (DOM) facilitated AB to agglomerate Microcystis to form large colonies. EPS of living Z5, mainly the aromatic protein components, played a key role in colony induction. Z5 initially aggregated Microcystis via the bridging effects of Ca2+ and DOM, followed by the induction of EPS synthesis and secretion in Microcystis. In this process, the colony forming mode shifted from cell adhesion to a combination of cell adhesion and cell division. Intriguingly, Z5 drove the genomic rearrangement of Microcystis by upregulating some transposase genes. This study unveiled a novel mechanism about Microcystis colony formation and identified a new driver of Microcystis genomic evolution.
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Affiliation(s)
- Chunyan Yang
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Mengyue Ding
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Kaiyu Hou
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Junzhou Feng
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Xu Li
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Xiaoyi Pan
- Key Laboratory of Healthy Freshwater Aquaculture, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Zhejiang Institute of Freshwater Fisheries, Huzhou 313001, China
| | - Caiyun Yang
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Xiaohui Zhang
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Jianlin Guo
- Key Laboratory of Healthy Freshwater Aquaculture, Ministry of Agriculture and Rural Affairs, Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Zhejiang Institute of Freshwater Fisheries, Huzhou 313001, China
| | - Xianzhu Dai
- Chongqing Key Laboratory of Bio-Resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China; National Base of International S&T Collaboration on Water Environmental Monitoring and Simulation in TGR Region (WEMST), 400716 Chongqing, China.
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4
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de la Rosa F, Pezzoni M, De Troch M, Costa CS, Hernando M. Effects of temperature up-shift and UV-A radiation on fatty acids content and expression of desaturase genes in cyanobacteria Microcystis aeruginosa: stress tolerance and acclimation responses. Photochem Photobiol Sci 2024; 23:1167-1178. [PMID: 38717721 DOI: 10.1007/s43630-024-00584-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Accepted: 04/23/2024] [Indexed: 06/18/2024]
Abstract
Temperature up-shift and UV-A radiation effects on growth, lipid damage, fatty acid (FA) composition and expression of desaturase genes desA and desB were investigated in the cyanobacteria Microcystis aeruginosa. Although UV-A damaging effect has been well documented, reports on the interactive effects of UV radiation exposure and warming on cyanobacteria are scarce. Temperature and UV-A doses were selected based on the physiological responses previously obtained by studies with the same M. aeruginosa strain used in this study. Cells pre-grown at 26 °C were incubated at the same temperature or 29 °C and exposed to UV-A + PAR and only PAR for 9 days. Growth rate was significantly affected by UV-A radiation independently of the temperature throughout the experiment. High temperature produced lipid damage significantly higher throughout the experiment, decreasing at day 9 as compared to 26 °C. In addition, the cells grown at 29 °C under UV-A displayed a decrease in polyunsaturated FA (PUFA) levels, with ω3 PUFA being mostly affected at the end of exposure. Previously, we reported that UV-A-induced lipid damage affects differentially ω3 and ω6 PUFAs. We report that UV-A radiation leads to an upregulation of desA, possibly due to lipid damage. In addition, the temperature up-shift upregulates desA and desB regardless of the radiation. The lack of lipid damage for UV-A on ω3 could explain the lack of transcription induction of desB. The significant ω6 decrease at 26 °C in cells exposed to UV-A could be due to the lack of upregulation of desA.
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Affiliation(s)
- Florencia de la Rosa
- Instituto de Ciencias Básicas y Experimentales, Universidad de Morón, General Machado 914, 1708, Morón, Buenos Aires, Argentina.
- CONICET, 2290, Godoy Cruz, Buenos Aires, Argentina.
| | - Magdalena Pezzoni
- CONICET, 2290, Godoy Cruz, Buenos Aires, Argentina
- Departamento de Radiobiología, Comisión Nacional de Energía Atómica (CNEA), Centro Atómico Constituyentes, Av. Gral. Paz 1499, 1650, San Martín, Buenos Aires, Argentina
| | - Marleen De Troch
- Faculty of Sciences, Marine Biology, Ghent University, Krijgslaan 281-S8, Ghent, Belgium
| | - Cristina S Costa
- Departamento de Radiobiología, Comisión Nacional de Energía Atómica (CNEA), Centro Atómico Constituyentes, Av. Gral. Paz 1499, 1650, San Martín, Buenos Aires, Argentina
| | - Marcelo Hernando
- CONICET, 2290, Godoy Cruz, Buenos Aires, Argentina
- Departamento de Radiobiología, Comisión Nacional de Energía Atómica (CNEA), Centro Atómico Constituyentes, Av. Gral. Paz 1499, 1650, San Martín, Buenos Aires, Argentina
- Red de Investigación de Estresores Marinos-Costeros en América Latina y El Caribe, REMARCO, Mar del Plata, Argentina
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5
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Minnick MF. Functional Roles and Genomic Impact of Miniature Inverted-Repeat Transposable Elements (MITEs) in Prokaryotes. Genes (Basel) 2024; 15:328. [PMID: 38540387 PMCID: PMC10969869 DOI: 10.3390/genes15030328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 02/27/2024] [Accepted: 03/01/2024] [Indexed: 06/14/2024] Open
Abstract
Prokaryotic genomes are dynamic tapestries that are strongly influenced by mobile genetic elements (MGEs), including transposons (Tn's), plasmids, and bacteriophages. Of these, miniature inverted-repeat transposable elements (MITEs) are undoubtedly the least studied MGEs in bacteria and archaea. This review explores the diversity and distribution of MITEs in prokaryotes and describes what is known about their functional roles in the host and involvement in genomic plasticity and evolution.
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Affiliation(s)
- Michael F Minnick
- Program in Cellular, Molecular and Microbial Biology, Division of Biological Sciences, University of Montana, Missoula, MT 59812, USA
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6
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Baylous HR, Gladfelter MF, Gardner MI, Foley M, Wilson AE, Steffen MM. Indole-3-acetic acid promotes growth in bloom-forming Microcystis via an antioxidant response. HARMFUL ALGAE 2024; 133:102575. [PMID: 38485434 DOI: 10.1016/j.hal.2024.102575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 01/05/2024] [Accepted: 01/05/2024] [Indexed: 03/19/2024]
Abstract
Interactions between bacteria and phytoplankton in the phycosphere facilitate and constrain biogeochemical cycling in aquatic ecosystems. Indole-3-acetic acid (IAA) is a bacterially produced chemical signal that promotes growth of phytoplankton and plants. Here, we explored the impact of IAA on bloom-forming cyanobacteria and their associated bacteria. Exposure to IAA and its precursor, tryptophan, resulted in a strong growth response in a bloom of the freshwater cyanobacterium, Microcystis. Metatranscriptome analysis revealed the induction of an antioxidant response in Microcystis upon exposure to IAA, potentially allowing populations to increase photosynthetic rate and overcome internally generated reactive oxygen. Our data reveal that co-occurring bacteria within the phycosphere microbiome exhibit a division of labor for supportive functions, such as nutrient mineralization and transport, vitamin synthesis, and reactive oxygen neutralization. These complex dynamics within the Microcystis phycosphere microbiome are an example of interactions within a microenvironment that can have ecosystem-scale consequences.
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Affiliation(s)
- Hunter R Baylous
- Department of Biology, James Madison University, Harrisonburg, VA 22801, USA
| | - Matthew F Gladfelter
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, Auburn, AL 36849, USA
| | - Malia I Gardner
- Department of Biology, James Madison University, Harrisonburg, VA 22801, USA
| | - Madalynn Foley
- Department of Biology, James Madison University, Harrisonburg, VA 22801, USA
| | - Alan E Wilson
- School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, Auburn, AL 36849, USA
| | - Morgan M Steffen
- Department of Biology, James Madison University, Harrisonburg, VA 22801, USA.
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7
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Liu H, Lv H, Xu H, Rao D, Zhang J, Sun B. Is monochloramine pre-oxidation a viable strategy for enhancing the treatment efficiency of algae-laden water with conventional drinking water treatment process? CHEMOSPHERE 2024; 352:141312. [PMID: 38311043 DOI: 10.1016/j.chemosphere.2024.141312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Revised: 01/24/2024] [Accepted: 01/25/2024] [Indexed: 02/06/2024]
Abstract
Algal blooms worldwide pose many challenges to drinking water production. Pre-oxidation with NaClO, KMnO4, or ozone is commonly used to enhance algal removal in conventional drinking water treatment processes. However, these currently utilized oxidation methods often result in significant algal cell lysis or impede the operation of the subsequent units. Higher algal removal with pre-chlorination in algal solutions prepared with natural water, compared to those prepared with ultrapure water, has been observed. In the present studies, preliminary findings indicate that ammonium in natural water alters chlorine species to NH2Cl, leading to improved treatment efficiency. NH2Cl with 1.5-3.0 mg∙L-1 as Cl2 with an oxidation time of 3-7 h significantly enhancing algal removal by coagulation. The selective oxidation of surface-absorbed organic matter (S-AOM) by NH2Cl, followed by the subsequent peeling off of this material from the algal surface, leading to an increase in zeta potential from -20.2 mV to -3.8 mV, constitutes the primary mechanism of enhanced algal removal through coagulation. These peeled S-AOM retained their large molecular weight and acted as polymer aids. Compared with NaClO and KMnO4, NH2Cl displays the best performance in improving algal removal, avoiding cell lysis, and decreasing the potential for nitrogenous disinfection byproducts formation under the reaction conditions used in this study. Notably, in major Chinese cities, water purification plants commonly rely on suburban lakes or reservoirs as water sources, necessitating the transportation of raw water over long distances for times up to several hours. These conditions favor the implementation of NH2Cl pre-oxidation. The collective results indicate the potential of NH2Cl oxidation as a viable pretreatment strategy for algal contamination during water treatment processes.
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Affiliation(s)
- Han Liu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao, Shandong, 266237, PR China
| | - Huanyu Lv
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao, Shandong, 266237, PR China
| | - Hangzhou Xu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao, Shandong, 266237, PR China
| | - Dandan Rao
- Department of Chemical and Environmental Engineering, University of California, Riverside, A235 Bourns Hall, 3401 Watkins Drive, Riverside, CA, 92521, United States
| | - Jian Zhang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao, Shandong, 266237, PR China; College of Safety and Environmental Engineering, Shandong University of Science and Technology, Qingdao, Shandong, 266590, PR China.
| | - Bo Sun
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao, Shandong, 266237, PR China.
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8
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Moore LR, Caspi R, Campbell DA, Casey JR, Crevecoeur S, Lea-Smith DJ, Long B, Omar NM, Paley SM, Schmelling NM, Torrado A, Zehr JP, Karp PD. CyanoCyc cyanobacterial web portal. Front Microbiol 2024; 15:1340413. [PMID: 38357349 PMCID: PMC10864581 DOI: 10.3389/fmicb.2024.1340413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 01/11/2024] [Indexed: 02/16/2024] Open
Abstract
CyanoCyc is a web portal that integrates an exceptionally rich database collection of information about cyanobacterial genomes with an extensive suite of bioinformatics tools. It was developed to address the needs of the cyanobacterial research and biotechnology communities. The 277 annotated cyanobacterial genomes currently in CyanoCyc are supplemented with computational inferences including predicted metabolic pathways, operons, protein complexes, and orthologs; and with data imported from external databases, such as protein features and Gene Ontology (GO) terms imported from UniProt. Five of the genome databases have undergone manual curation with input from more than a dozen cyanobacteria experts to correct errors and integrate information from more than 1,765 published articles. CyanoCyc has bioinformatics tools that encompass genome, metabolic pathway and regulatory informatics; omics data analysis; and comparative analyses, including visualizations of multiple genomes aligned at orthologous genes, and comparisons of metabolic networks for multiple organisms. CyanoCyc is a high-quality, reliable knowledgebase that accelerates scientists' work by enabling users to quickly find accurate information using its powerful set of search tools, to understand gene function through expert mini-reviews with citations, to acquire information quickly using its interactive visualization tools, and to inform better decision-making for fundamental and applied research.
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Affiliation(s)
| | - Ron Caspi
- SRI International, Menlo Park, CA, United States
| | | | - John R. Casey
- Lawrence Livermore National Laboratory, Physical and Life Sciences Directorate, Livermore, CA, United States
| | - Sophie Crevecoeur
- Watershed Hydrology and Ecology Research Division, Environment and Climate Change Canada, Burlington, ON, Canada
| | - David J. Lea-Smith
- School of Biological Sciences, University of East Anglia, Norwich, United Kingdom
| | - Bin Long
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, United States
| | | | | | | | - Alejandro Torrado
- Institute of Plant Biochemistry and Photosynthesis, University of Seville and Spanish National Research Council, Sevilla, Spain
| | - Jonathan P. Zehr
- Ocean Sciences Department, University of California, Santa Cruz, Santa Cruz, CA, United States
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Cheng W, Hwang S, Guo Q, Qian L, Liu W, Yu Y, Liu L, Tao Y, Cao H. The Special and General Mechanism of Cyanobacterial Harmful Algal Blooms. Microorganisms 2023; 11:microorganisms11040987. [PMID: 37110410 PMCID: PMC10144548 DOI: 10.3390/microorganisms11040987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 03/27/2023] [Accepted: 03/29/2023] [Indexed: 04/29/2023] Open
Abstract
Cyanobacterial harmful algal blooms (CyanoHABs) are longstanding aquatic hazards worldwide, of which the mechanism is not yet fully understood, i.e., the process in which cyanobacteria establish dominance over coexisting algae in the same eutrophic waters. The dominance of CyanoHABs represents a deviation from their low abundance under conventional evolution in the oligotrophic state, which has been the case since the origin of cyanobacteria on early Earth. To piece together a comprehensive mechanism of CyanoHABs, we revisit the origin and adaptive radiation of cyanobacteria in oligotrophic Earth, demonstrating ubiquitous adaptive radiation enabled by corresponding biological functions under various oligotrophic conditions. Next, we summarize the biological functions (ecophysiology) which drive CyanoHABs and ecological evidence to synthesize a working mechanism at the population level (the special mechanism) for CyanoHABs: CyanoHABs are the consequence of the synergistic interaction between superior cyanobacterial ecophysiology and elevated nutrients. Interestingly, these biological functions are not a result of positive selection by water eutrophication, but an adaptation to a longstanding oligotrophic state as all the genes in cyanobacteria are under strong negative selection. Last, to address the relative dominance of cyanobacteria over coexisting algae, we postulate a "general" mechanism of CyanoHABs at the community level from an energy and matter perspective: cyanobacteria are simpler life forms and thus have lower per capita nutrient demand for growth than coexisting eukaryotic algae. We prove this by comparing cyanobacteria and eukaryotic algae in cell size and structure, genome size, size of genome-scale metabolic networks, cell content, and finally the golden standard-field studies with nutrient supplementation in the same waters. To sum up, the comprehensive mechanism of CyanoHABs comprises a necessary condition, which is the general mechanism, and a sufficient condition, which is the special mechanism. One prominent prediction based on this tentative comprehensive mechanism is that eukaryotic algal blooms will coexist with or replace CyanoHABs if eutrophication continues and goes over the threshold nutrient levels for eukaryotic algae. This two-fold comprehensive mechanism awaits further theoretic and experimental testing and provides an important guide to control blooms of all algal species.
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Affiliation(s)
- Wenduo Cheng
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
| | - Somin Hwang
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
| | - Qisen Guo
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
| | - Leyuan Qian
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
| | - Weile Liu
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
| | - Yang Yu
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
| | - Li Liu
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
| | - Yi Tao
- Guangdong Provincial Engineering Research Center for Urban Water Recycling and Environmental Safety, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Huansheng Cao
- Division of Natural and Applied Sciences, Duke Kunshan University, 8 Duke Ave, Kunshan 215316, China
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10
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Hou X, Yan Y, Wang Y, Jiang T, Zhang X, Dai X, Igarashi Y, Luo F, Yang C. An insight into algicidal characteristics of Bacillus altitudinis G3 from dysfunctional photosystem and overproduction of reactive oxygen species. CHEMOSPHERE 2023; 310:136767. [PMID: 36241112 DOI: 10.1016/j.chemosphere.2022.136767] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 09/20/2022] [Accepted: 10/03/2022] [Indexed: 06/16/2023]
Abstract
Cyanobacterial blooms negatively affect aquatic ecosystems and human health. Algicidal bacteria can efficiently kill bloom-causing cyanobacteria. Bacillus altitudinis G3 isolated from Dianchi Lake shows high algicidal activity against Microcystis aeruginosa. In this study, we investigated its algicidal characteristics including attack mode, photosynthesis responses, and source and the contribution of reactive oxygen species (ROS). The results showed that G3 efficiently and specifically killed M. aeruginosa mainly by releasing both thermolabile and thermostable algicidal substances, which exhibited the highest algicidal activity (99.8%, 72 h) in bacterial mid-logarithmic growth phase. The algicidal ratio under full-light conditions (99.5%, 60 h) was significantly higher than under dark conditions (<20%, P < 0.001). G3 filtrate caused photosystem dysfunction by decreasing photosynthetic efficiency, as indicated by significantly decreased Fv/Fm and PIABS (P < 0.001) values. It also inhibited photosynthetic electron transfer as indicated by significantly decreased rETR (P < 0.001), especially QA- downstream, as revealed by significantly decreased φEo and ψo, and increased Mo (P < 0.001). These results indicated that the algicidal activity of G3 filtrate is light-dependent, and the cyanobacterial photosystem is an important target. Cyanobacterial ROS and malondialdehyde contents greatly increased by 37.1% and 208% at 36 h, respectively. ROS levels decreased by 49.2% (9 h) when diuron (3-(3-4-dichlorophenyl)-1,1-dimethylurea) partially blocked photosynthetic electron transport from QA to QB. Therefore, excessive ROS were produced from disrupted photosynthesis, especially the inhibited electron transport area in QA- downstream, and caused severe lipid peroxidation with significantly increased MDA content and oxidative stress in cyanobacteria. The ROS scavenger N-acetyl-l-cysteine significantly decreased both cyanobacterial ROS levels (34%) and algicidal ratio (52%, P < 0.05) at 39 h. Thus, excessive ROS production due to G3 filtrate administration significantly contributed to its algicidal effect. G3 could be an excellent algicide to control M. aeruginosa blooms in waters under suitable light conditions.
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Affiliation(s)
- Xiping Hou
- Chongqing Key Lab of Bio-resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Yaoyao Yan
- Chongqing Key Lab of Bio-resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Yuqin Wang
- Interdisciplinary Research Centre for Agriculture Green Development in Yangtze River Basin, College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Tao Jiang
- Interdisciplinary Research Centre for Agriculture Green Development in Yangtze River Basin, College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Xiaohui Zhang
- Chongqing Key Lab of Bio-resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Xianzhu Dai
- Chongqing Key Lab of Bio-resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Yasuo Igarashi
- Chongqing Key Lab of Bio-resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing, 400715, China
| | - Feng Luo
- Chongqing Key Lab of Bio-resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing, 400715, China.
| | - Caiyun Yang
- Chongqing Key Lab of Bio-resource Development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing, 400715, China; Interdisciplinary Research Centre for Agriculture Green Development in Yangtze River Basin, College of Resources and Environment, Southwest University, Chongqing, 400715, China.
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11
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Le VV, Srivastava A, Ko SR, Ahn CY, Oh HM. Microcystis colony formation: Extracellular polymeric substance, associated microorganisms, and its application. BIORESOURCE TECHNOLOGY 2022; 360:127610. [PMID: 35840029 DOI: 10.1016/j.biortech.2022.127610] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 07/06/2022] [Accepted: 07/07/2022] [Indexed: 06/15/2023]
Abstract
Microcystis sp., amongst the most prevalent bloom-forming cyanobacteria, is typically found as a colonial form with multiple microorganisms embedded in the mucilage known as extracellular polymeric substance. The colony-forming ability of Microcystis has been thoroughly investigated, as has the connection between Microcystis and other microorganisms, which is crucial for colony development. The following are the key subjects to comprehend Microcystis bloom in depth: 1) key issues related to the Microcystis bloom, 2) features and functions of extracellular polymeric substance, as well as diversity of associated microorganisms, and 3) applications of Microcystis-microorganisms interaction including bloom control, polluted water bioremediation, and bioactive compound production. Future research possibilities and recommendations regarding Microcystis-microorganism interactions and their significance in Microcystis colony formation are also explored. More information on such interactions, as well as the mechanism of Microcystis colony formation, can bring new insights into cyanobacterial bloom regulation and a better understanding of the aquatic ecosystem.
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Affiliation(s)
- Ve Van Le
- Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea; Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon 34141, Republic of Korea
| | - Ankita Srivastava
- Department of Botany, Siddharth University, Kapilvastu, Siddharth Nagar 272202, Uttar Pradesh, India
| | - So-Ra Ko
- Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Chi-Yong Ahn
- Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea; Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon 34141, Republic of Korea
| | - Hee-Mock Oh
- Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea; Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon 34141, Republic of Korea.
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12
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Sandwich Hybridization Assay for In Situ Real-Time Cyanobacterial Detection and Monitoring: A Review. BIOSENSORS 2022; 12:bios12080640. [PMID: 36005037 PMCID: PMC9405892 DOI: 10.3390/bios12080640] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 08/02/2022] [Accepted: 08/11/2022] [Indexed: 11/17/2022]
Abstract
As cyanobacterial harmful algal bloom (cHAB) events increase in scale, severity, frequency, and duration around the world, rapid and accurate monitoring and characterization tools have become critically essential for regulatory and management decision-making. The composition of cHAB-forming cyanobacteria community can change significantly over time and space and be altered by sample preservation and transportation, making in situ monitoring necessary to obtain real-time and localized information. Sandwich hybridization assay (SHA) utilizes capture oligonucleotide probes for sensitive detection of target-specific nucleic acid sequences. As an amplification-free molecular biology technology, SHA can be adapted for in-situ, real-time or near real-time detection and qualitatively or semi-quantitatively monitoring of cHAB-forming cyanobacteria, owing to its characteristics such as being rapid, portable, inexpensive, and amenable to automation, high sensitivity, specificity and robustness, and multiplexing (i.e., detecting multiple targets simultaneously). Despite its successful application in the monitoring of marine and freshwater phytoplankton, there is still room for improvement. The ability to identify a cHAB community rapidly would decrease delays in cyanotoxin analyses, reduce costs, and increase sample throughput, allowing for timely actions to improve environmental and human health and the understanding of short- and long-term bloom dynamics. Real-time detection and quantitation of HAB-forming cyanobacteria is essential for improving environmental and public health and reducing associated costs. We review and propose to apply SHA for in situ cHABs monitoring.
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13
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Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity. THE ISME JOURNAL 2022; 16:1921-1931. [PMID: 35459792 PMCID: PMC9296519 DOI: 10.1038/s41396-022-01242-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 04/05/2022] [Accepted: 04/08/2022] [Indexed: 01/01/2023]
Abstract
The plasticity of bacterial and archaeal genomes makes examining their ecological and evolutionary dynamics both exciting and challenging. The same mechanisms that enable rapid genomic change and adaptation confound current approaches for recovering complete genomes from metagenomes. Here, we use strain-specific patterns of DNA methylation to resolve complex bacterial genomes from long-read metagenomic data of a marine microbial consortium, the “pink berries” of the Sippewissett Marsh (USA). Unique combinations of restriction-modification (RM) systems encoded by the bacteria produced distinctive methylation profiles that were used to accurately bin and classify metagenomic sequences. Using this approach, we finished the largest and most complex circularized bacterial genome ever recovered from a metagenome (7.9 Mb with >600 transposons), the finished genome of Thiohalocapsa sp. PB-PSB1 the dominant bacteria in the consortia. From genomes binned by methylation patterns, we identified instances of horizontal gene transfer between sulfur-cycling symbionts (Thiohalocapsa sp. PB-PSB1 and Desulfofustis sp. PB-SRB1), phage infection, and strain-level structural variation. We also linked the methylation patterns of each metagenome-assembled genome with encoded DNA methyltransferases and discovered new RM defense systems, including novel associations of RM systems with RNase toxins.
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14
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Contributions on Lindane Degradation by Microcystis aeruginosa PCC 7806. WATER 2022. [DOI: 10.3390/w14081219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Cyanobacteria are able to tolerate, and even metabolize, moderate doses of organochlorine pesticides, such as lindane (γ-hexachlorocyclohexane), one of the most persistent and widely used in recent decades. Previous work showed that Microcystis aeruginosa PCC 7806 degrades lindane and that, in the presence of the pesticide, microcystin synthesis is enhanced. In this work, using in silico approaches, we have identified in M. aeruginosa putative homologues of the lin genes, involved in lindane degradation in Sphingobium japonicum UT26S. Real-time RT-PCR assays showed that the putative linC gene was induced in the presence of 7 mg/L of lindane. Additionally, prxA, encoding a peroxiredoxin, and involved in oxidative stress response, was also induced when lindane was present. Taking into account these results, M. aeruginosa PCC 7806 may degrade lindane through a metabolic pathway involving a putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase encoded by a linC homologue. However, the low similarity of the other potential lin homologues suggest the existence of an alternative pathway different to that of heterotrophic microorganisms such as S. japonicum.
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15
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Chakdar H, Thapa S, Srivastava A, Shukla P. Genomic and proteomic insights into the heavy metal bioremediation by cyanobacteria. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127609. [PMID: 34772552 DOI: 10.1016/j.jhazmat.2021.127609] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 10/16/2021] [Accepted: 10/24/2021] [Indexed: 06/13/2023]
Abstract
Heavy metals (HMs) pose a global ecological threat due to their toxic effects on aquatic and terrestrial life. Effective remediation of HMs from the environment can help to restore soil's fertility and ecological vigor, one of the key Sustainable Development Goals (SDG) set by the United Nations. The cyanobacteria have emerged as a potential option for bioremediation of HMs due to their unique adaptations and robust metabolic machineries. Generally, cyanobacteria deploy multifarious mechanisms such as biosorption, bioaccumulation, activation of metal transporters, biotransformation and induction of detoxifying enzymes to sequester and minimize the toxic effects of heavy metals. Therefore, understanding the physiological responses and regulation of adaptation mechanisms at molecular level is necessary to unravel the candidate genes and proteins which can be manipulated to improve the bioremediation efficiency of cyanobacteria. Chaperons, cellular metabolites (extracellular polymers, biosurfactants), transcriptional regulators, metal transporters, phytochelatins and metallothioneins are some of the potential targets for strain engineering. In the present review, we have discussed the potential of cyanobacteria for HM bioremediation and provided a deeper insight into their genomic and proteomic regulation of various tolerance mechanisms. These approaches might pave new possibilities of implementing genetic engineering strategies for improving bioremediation efficiency with a future perspective.
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Affiliation(s)
- Hillol Chakdar
- Microbial Technology Unit II, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau 275103, Uttar Pradesh, India
| | - Shobit Thapa
- Microbial Technology Unit II, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau 275103, Uttar Pradesh, India
| | - Amit Srivastava
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, ID 47907-2048, United States
| | - Pratyoosh Shukla
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India; Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand University, Rohtak 124001, Haryana, India.
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16
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Harada KI. [Elucidation of Phenomena Involving Cyanobacteria in Freshwater Ecosystem by Chemically Ecological Approach]. YAKUGAKU ZASSHI 2022; 142:39-64. [PMID: 34980750 DOI: 10.1248/yakushi.21-00146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Lakes Sagami and Tsukui are reservoirs constructed by connecting to the Sagami River. Because of eutrophication of the lakes, cyanobacteria have appeared every year. This review deals with phenomena related to occurrence of cyanobacteria that have been observed for 40 years since 1974 at the lakes. These 40 years of observations raised three interesting issues including the retention of cyanobacteria on their surfaces. These phenomena have been attributed to the usual factors, such as illuminance, nutrition and water temperature, but our research results suggested that they cannot be resolved without the introduction of another factor. We have attempted to elucidate various phenomena involving cyanobacteria in lake ecosystems by chemical ecological methods using volatile organic compounds (VOCs) produced by the cyanobacteria as indicators. One of the VOCs, β-cyclocitral, was significantly involved in the above phenomena, which was considered to be produced by the carotenoid cleavage dioxygenase (CCD) of the cyanobacteria. β-Cyclocitral was not produced in the two known CCDs, but two additional CCDs to Microcystis aeruginosa participated to produce the β-cyclocitral. These CCDs did not directly produce β-cyclocitral, but it was accumulated in cells as their precursors. The released β-cyclocitral underwent a Baeyer-Villiger-like oxidation. It was speculated that Microcystis activated the CCD genes through density stress and produced β-cyclocitral, which acted as an allelopathic substance. As a result, the number of cells of cyanobacteria decreased, and the resulting nitrogen and phosphorus were fed to the living cyanobacteria. It is postulated that this "quorum sensing" was functioning in the above-mentioned issues.
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17
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Valadez-Cano C, Hawkes K, Calvaruso R, Reyes-Prieto A, Lawrence J. Amplicon-based and metagenomic approaches provide insights into toxigenic potential in understudied Atlantic Canadian lakes. Facets (Ott) 2022. [DOI: 10.1139/facets-2021-0109] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Cyanobacterial blooms and their toxigenic potential threaten freshwater resources worldwide. In Atlantic Canada, despite an increase of cyanobacterial blooms in the last decade, little is known about the toxigenic potential and the taxonomic affiliation of bloom-forming cyanobacteria. In this study, we employed polymerase chain reaction (PCR) and metagenomic approaches to assess the potential for cyanotoxin and other bioactive metabolite production in Harvey Lake (oligotrophic) and Washademoak Lake (mesotrophic) in New Brunswick, Canada, during summer and early fall months. The PCR survey detected the potential for microcystin (hepatotoxin) and anatoxin-a (neurotoxin) production in both lakes, despite a cyanobacterial bloom only being visible in Washademoak. Genus-specific PCR associated microcystin production potential with the presence of Microcystis in both lakes. The metagenomic strategy provided insight into temporal variations in the microbial communities of both lakes. It also permitted the recovery of a near-complete Microcystis aeruginosa genome with the genetic complement to produce microcystin and other bioactive metabolites such as piricyclamide, micropeptin/cyanopeptolin, and aeruginosin. Our approaches demonstrate the potential for production of a diverse complement of bioactive compounds and establish important baseline data for future studies of understudied lakes, which are frequently affected by cyanobacterial blooms.
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Affiliation(s)
- Cecilio Valadez-Cano
- Department of Biology, University of New Brunswick, PO Box 4400, Fredericton, NB, E3B 5A3, Canada
| | - Kristen Hawkes
- Department of Biology, University of New Brunswick, PO Box 4400, Fredericton, NB, E3B 5A3, Canada
| | - Rossella Calvaruso
- Department of Biology, University of New Brunswick, PO Box 4400, Fredericton, NB, E3B 5A3, Canada
| | - Adrian Reyes-Prieto
- Department of Biology, University of New Brunswick, PO Box 4400, Fredericton, NB, E3B 5A3, Canada
| | - Janice Lawrence
- Department of Biology, University of New Brunswick, PO Box 4400, Fredericton, NB, E3B 5A3, Canada
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18
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Qian Y, Okano K, Kodato M, Arai M, Yanagiya T, Li Q, Amano C, Ruike K, Itayama T, Iwami N, Utsumi M, Lei Z, Zhang Z, Sugiura N, Shimizu K. Dynamics of the prokaryotic and eukaryotic microbial community during a cyanobacterial bloom. Biosci Biotechnol Biochem 2021; 86:78-91. [PMID: 34661632 DOI: 10.1093/bbb/zbab179] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 10/06/2021] [Indexed: 11/14/2022]
Abstract
Toxic cyanobacterial blooms frequently develop in eutrophic freshwater bodies worldwide. Microcystis species produce microcystins (MCs) as a cyanotoxin. Certain bacteria that harbor the mlr gene cluster, especially mlrA, are capable of degrading MCs. However, MC-degrading bacteria may possess or lack mlr genes (mlr+ and mlr- genotypes, respectively). In this study, we investigated the genotype that predominantly contributes to biodegradation and cyanobacterial predator community structure with change in total MC concentration in an aquatic environment. The 2 genotypes coexisted but mlr+ predominated, as indicated by the negative correlation between mlrA gene copy abundance and total MC concentration. At the highest MC concentrations, predation pressure by Phyllopoda, Copepoda, and Monogononta (rotifers) was reduced; thus, MCs may be toxic to cyanobacterial predators. The results suggest that cooperation between MC-degrading bacteria and predators may reduce Microcystis abundance and MC concentration.
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Affiliation(s)
- Yilin Qian
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
| | - Kunihiro Okano
- Department of Biological Environment, Faculty of Bioresource Sciences, Akita Prefectural University, Nakano Shimoshinjo, Akita City, Akita, Japan
| | - Miwa Kodato
- Faculty of Life Sciences, Toyo University, Gunma, Japan
| | - Michiko Arai
- Faculty of Life Sciences, Toyo University, Gunma, Japan
| | - Takeru Yanagiya
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
| | - Qintong Li
- Faculty of Life Sciences, Toyo University, Gunma, Japan
| | - Chie Amano
- Faculty of Life Sciences, Toyo University, Gunma, Japan
- Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| | - Kakeru Ruike
- Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
| | - Tomoaki Itayama
- Graduate School of Engineering, Nagasaki University, Nagasaki, Japan
| | - Norio Iwami
- School of Science and Engineering, Meisei University, Hino, Tokyo, Japan
| | - Motoo Utsumi
- Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
- Sustainability Research Center, University of Tsukuba, Ibaraki, Japan
| | - Zhongfang Lei
- Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
| | - Zhenya Zhang
- Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
| | - Norio Sugiura
- Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
| | - Kazuya Shimizu
- Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan
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19
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Qi J, Ma B, Miao S, Liu R, Hu C, Qu J. Pre-oxidation enhanced cyanobacteria removal in drinking water treatment: A review. J Environ Sci (China) 2021; 110:160-168. [PMID: 34593187 DOI: 10.1016/j.jes.2021.03.040] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 03/15/2021] [Indexed: 06/13/2023]
Abstract
Cyanobacterial bloom has many adverse effects on source water quality and drinking water production. The traditional water treatment process can hardly achieve satisfactory removal of algae cells. This review examines the impact of pre-oxidation on the removal of cyanobacteria by solid-liquid separation processes. It was reported that the introduction of chemical oxidants such as chlorine, potassium permanganate, and ozone in algae-laden water pretreatment could improve algae removal by the subsequent solid-liquid separation processes. However, over dosed oxidants can result in more serious water quality risks due to significant algae cell lysis and undesirable intracellular organic matter release. It was suggested that moderate pre-oxidation may enhance the removal of cyanobacteria without damaging algae cells. In this article, effects of moderate pretreatment on the solid-liquid separation processes (sedimentation, dissolved air flotation, and membrane filtration) are reviewed.
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Affiliation(s)
- Jing Qi
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Baiwen Ma
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shiyu Miao
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ruiping Liu
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Chengzhi Hu
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Jiuhui Qu
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
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20
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Huo D, Gan N, Geng R, Cao Q, Song L, Yu G, Li R. Cyanobacterial blooms in China: diversity, distribution, and cyanotoxins. HARMFUL ALGAE 2021; 109:102106. [PMID: 34815019 DOI: 10.1016/j.hal.2021.102106] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 09/14/2021] [Accepted: 09/14/2021] [Indexed: 06/13/2023]
Abstract
Cyanobacterial blooms, which refer to the massive growth of harmful cyanobacteria, have altered the global freshwater ecosystems during the past decades. China has the largest population in the world, and it is suffering from the harmful effect of water eutrophication and cyanobacterial blooms along with rapid development of the economy and society. Research on cyanobacterial blooms and cyanotoxins in China have been overwhelmingly enhanced and emphasized during the past decades. In the present review, the research on cyanobacterial blooms in China is generally introduced, including the history of cyanobacterial bloom studies, the diversity of the bloom-forming cyanobacteria species (BFCS), and cyanotoxin studies in China. Most studies have focused on Microcystis, its blooms, and microcystins. Newly emerging blooms with the dominance of non-Microcystis BFCS have been gradually expanding to wide regions in China. Understanding the basic features of these non-Microcystis BFCS and their blooms, including their diversity, occurrence, physio-ecology, and harmful metabolites, will provide direction on future studies of cyanobacterial blooms in China.
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Affiliation(s)
- Da Huo
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, PR China
| | - Nanqin Gan
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, PR China
| | - Ruozhen Geng
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, PR China; University of Chinese Academy of Sciences, Beijing 400049, PR China
| | - Qi Cao
- Tianjin Key Laboratory of Aqua-Ecology and Aquaculture, College of Fisheries, Tianjin Agricultural University, Tianjin 300384, PR China
| | - Lirong Song
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, PR China
| | - Gongliang Yu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, PR China
| | - Renhui Li
- College of Life and Environmental Sciences, Wenzhou University, Wenzhou 325000, PR China.
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21
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Hoke AK, Reynoso G, Smith MR, Gardner MI, Lockwood DJ, Gilbert NE, Wilhelm SW, Becker IR, Brennan GJ, Crider KE, Farnan SR, Mendoza V, Poole AC, Zimmerman ZP, Utz LK, Wurch LL, Steffen MM. Genomic signatures of Lake Erie bacteria suggest interaction in the Microcystis phycosphere. PLoS One 2021; 16:e0257017. [PMID: 34550975 PMCID: PMC8457463 DOI: 10.1371/journal.pone.0257017] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 08/20/2021] [Indexed: 11/18/2022] Open
Abstract
Microbial interactions in harmful algal bloom (HAB) communities have been examined in marine systems, but are poorly studied in fresh waters. To investigate HAB-microbe interactions, we isolated bacteria with close associations to bloom-forming cyanobacteria, Microcystis spp., during a 2017 bloom in the western basin of Lake Erie. The genomes of five isolates (Exiguobacterium sp. JMULE1, Enterobacter sp. JMULE2, Deinococcus sp. JMULE3, Paenibacillus sp. JMULE4, and Acidovorax sp. JMULE5.) were sequenced on a PacBio Sequel system. These genomes ranged in size from 3.1 Mbp (Exiguobacterium sp. JMULE1) to 5.7 Mbp (Enterobacter sp. JMULE2). The genomes were analyzed for genes relating to critical metabolic functions, including nitrogen reduction and carbon utilization. All five of the sequenced genomes contained genes that could be used in potential signaling and nutrient exchange between the bacteria and cyanobacteria such as Microcystis. Gene expression signatures of algal-derived carbon utilization for two isolates were identified in Microcystis blooms in Lake Erie and Lake Tai (Taihu) at low levels, suggesting these organisms are active and may have a functional role during Microcystis blooms in aggregates, but were largely missing from whole water samples. These findings build on the growing evidence that the bacterial microbiome associated with bloom-forming algae have the functional potential to contribute to nutrient exchange within bloom communities and interact with important bloom formers like Microcystis.
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Affiliation(s)
- Alexa K. Hoke
- James Madison University, Harrisonburg, VA, United States of America
| | - Guadalupe Reynoso
- James Madison University, Harrisonburg, VA, United States of America
- Virginia Tech, Blacksburg, VA, United States of America
| | - Morgan R. Smith
- James Madison University, Harrisonburg, VA, United States of America
- Texas A&M University, College Station, TX, United States of America
| | - Malia I. Gardner
- James Madison University, Harrisonburg, VA, United States of America
| | | | - Naomi E. Gilbert
- James Madison University, Harrisonburg, VA, United States of America
- University of Tennessee, Knoxville, TN, United States of America
| | | | | | - Grant J. Brennan
- James Madison University, Harrisonburg, VA, United States of America
| | | | - Shannon R. Farnan
- James Madison University, Harrisonburg, VA, United States of America
| | - Victoria Mendoza
- James Madison University, Harrisonburg, VA, United States of America
| | - Alison C. Poole
- James Madison University, Harrisonburg, VA, United States of America
| | | | - Lucy K. Utz
- James Madison University, Harrisonburg, VA, United States of America
| | - Louie L. Wurch
- James Madison University, Harrisonburg, VA, United States of America
| | - Morgan M. Steffen
- James Madison University, Harrisonburg, VA, United States of America
- * E-mail:
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22
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Zeng Y, Wang J, Yang C, Ding M, Hamilton PB, Zhang X, Yang C, Zhnag L, Dai X. A Streptomyces globisporus strain kills Microcystis aeruginosa via cell-to-cell contact. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 769:144489. [PMID: 33465632 DOI: 10.1016/j.scitotenv.2020.144489] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2020] [Revised: 12/08/2020] [Accepted: 12/09/2020] [Indexed: 06/12/2023]
Abstract
Cyanobacterial harmful algal blooms (CyanoHABs) bring economic loss, damage aquatic ecosystems, and produce cyanobacterial toxins that threaten human health. Algicidal bacteria as pathogens can expediate the decline of CyanoHABs. In this study, a Streptomyces globisporus strain (designated G9), isolated from soil near a eutrophic pond, showed high algicidal activity against Microcystis aeruginosa. Experimental results show that G9 preyed on Microcystis through cell-to-cell contact: (1) the hyphae of G9 killed cyanobacterial cells by twining around them, while cells beyond the reach of G9 hyphae were in normal shapes; (2) No algicides were detectable in the supernatant of G9 cultures or G9-Microcystis cocultures. The algicidal ratio of G9 to M. aeruginosa reached 96.7% after 6 days. G9 selectively killed the tested cyanobacterial strains, while it had only minor impacts on the growth of tested Chlorophyceae. Differential gene expression studies show that G9 affected the expression of key genes of M. aeruginosa involved in photosynthesis, microcystin synthesis and cellular emergency responses. Further, the microcystin-LR content decreased gradually with G9 treatment. As the first reported Streptomyces sp. with algicidal (predation) activity requiring cell-to-cell contact with target prey, G9 is a good candidate for the exploration of additional cyanobacteria-bacteria interactions and the development of novel strategies to control CyanoHABs.
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Affiliation(s)
- Yudie Zeng
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Jiayu Wang
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Chunyan Yang
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Mengyue Ding
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Paul B Hamilton
- Canadian Museum of Nature, 240 McLeod Street, Ottawa, Ontario K1P 6P4, Canada
| | - Xiaohui Zhang
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Caiyun Yang
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Lei Zhnag
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Xianzhu Dai
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China.
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Pound HL, Wilhelm SW. Tracing the active genetic diversity of Microcystis and Microcystis phage through a temporal survey of Taihu. PLoS One 2020; 15:e0244482. [PMID: 33370358 PMCID: PMC7769430 DOI: 10.1371/journal.pone.0244482] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 12/11/2020] [Indexed: 01/08/2023] Open
Abstract
Harmful algal blooms are commonly thought to be dominated by a single genus, but they are not homogenous communities. Current approaches, both molecular and culture-based, often overlook fine-scale variations in community composition that can influence bloom dynamics. We combined homology-based searches (BLASTX) and phylogenetics to distinguish and quantify Microcystis host and phage members across a summer season during a 2014 Microcystis- dominated bloom that occurred in Lake Tai (Taihu), China. We found 47 different genotypes of the Microcystis-specific DNA-dependent RNA polymerase (rpoB), which included several morphospecies. Microcystis flos-aquae and Microcystis wesenbergii accounted for ~86% of total Microcystis transcripts, while the more commonly studied Microcystis aeruginosa only accounted for ~7%. Microcystis genotypes were classified into three temporal groups according to their expression patterns across the course of the bloom: early, constant and late. All Microcystis morphospecies were present in each group, indicating that expression patterns were likely dictated by competition driven by environmental factors, not phylogeny. We identified three primary Microcystis-infecting phages based on the viral terminase, including a novel Siphoviridae phage that may be capable of lysogeny. Within our dataset, Myoviridae phages consistent with those infecting Microcystis in a lytic manner were positively correlated to the early host genotypes, while the Siphoviridae phages were positively correlated to the late host genotypes, when the Myoviridae phages express putative genetic markers for lysogeny. The expression of genes in the microcystin-encoding mcy cassette was estimated using mcyA, which revealed 24 Microcystis-specific genotypes that were negatively correlated to the early host genotypes. Of all environmental factors measured, pH best described the temporal shift in the Microcystis community genotypic composition, promoting hypotheses regarding carbon concentration mechanisms and oxidative stress. Our work expounds on the complexity of HAB events, using a well-studied dataset to highlight the need for increased resolution of community dynamics.
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Affiliation(s)
- Helena L. Pound
- Department of Microbiology, The University of Tennessee, Knoxville, Tennessee, United States of America
| | - Steven W. Wilhelm
- Department of Microbiology, The University of Tennessee, Knoxville, Tennessee, United States of America
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24
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Jeong Y, Cho SH, Lee H, Choi HK, Kim DM, Lee CG, Cho S, Cho BK. Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria. Microorganisms 2020; 8:E1849. [PMID: 33255283 PMCID: PMC7761380 DOI: 10.3390/microorganisms8121849] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 11/15/2020] [Accepted: 11/23/2020] [Indexed: 12/16/2022] Open
Abstract
Cyanobacteria, given their ability to produce various secondary metabolites utilizing solar energy and carbon dioxide, are a potential platform for sustainable production of biochemicals. Until now, conventional metabolic engineering approaches have been applied to various cyanobacterial species for enhanced production of industrially valued compounds, including secondary metabolites and non-natural biochemicals. However, the shortage of understanding of cyanobacterial metabolic and regulatory networks for atmospheric carbon fixation to biochemical production and the lack of available engineering tools limit the potential of cyanobacteria for industrial applications. Recently, to overcome the limitations, synthetic biology tools and systems biology approaches such as genome-scale modeling based on diverse omics data have been applied to cyanobacteria. This review covers the synthetic and systems biology approaches for advanced metabolic engineering of cyanobacteria.
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Affiliation(s)
- Yujin Jeong
- Department of Biological Sciences and KAIST Institutes for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea; (Y.J.); (S.-H.C.)
| | - Sang-Hyeok Cho
- Department of Biological Sciences and KAIST Institutes for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea; (Y.J.); (S.-H.C.)
| | - Hookeun Lee
- Institute of Pharmaceutical Research, College of Pharmacy, Gachon University, Incheon 21999, Korea;
| | | | - Dong-Myung Kim
- Department of Chemical Engineering and Applied Chemistry, Chungnam National University, Daejeon 34134, Korea;
| | - Choul-Gyun Lee
- Department of Biological Engineering, Inha University, Incheon 22212, Korea;
| | - Suhyung Cho
- Department of Biological Sciences and KAIST Institutes for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea; (Y.J.); (S.-H.C.)
| | - Byung-Kwan Cho
- Department of Biological Sciences and KAIST Institutes for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea; (Y.J.); (S.-H.C.)
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25
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Sandrini G, Piel T, Xu T, White E, Qin H, Slot PC, Huisman J, Visser PM. Sensitivity to hydrogen peroxide of the bloom-forming cyanobacterium Microcystis PCC 7806 depends on nutrient availability. HARMFUL ALGAE 2020; 99:101916. [PMID: 33218441 DOI: 10.1016/j.hal.2020.101916] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 10/02/2020] [Accepted: 10/07/2020] [Indexed: 06/11/2023]
Abstract
Application of low concentrations of hydrogen peroxide (H2O2) is a relatively new and promising method to selectively suppress harmful cyanobacterial blooms, while minimizing effects on eukaryotic organisms. However, it is still unknown how nutrient limitation affects the sensitivity of cyanobacteria to H2O2. In this study, we compare effects of H2O2 on the microcystin-producing cyanobacterium Microcystis PCC 7806 under light-limited but nutrient-replete conditions, nitrogen (N) limitation and phosphorus (P) limitation. Microcystis was first grown in chemostats to acclimate to these different experimental conditions, and subsequently transferred to batch cultures where they were treated with a range of H2O2 concentrations (0-10 mg L-1) while exposed to high light (100 µmol photons m-2 s-1) or low light (15 µmol photons m-2 s-1). Our results show that, at low light, N- and P-limited Microcystis were less sensitive to H2O2 than light-limited but nutrient-replete Microcystis. A significantly higher expression of the genes encoding for anti-oxidative stress enzymes (2-cys-peroxiredoxin, thioredoxin A and type II peroxiredoxin) was observed prior to and after the H2O2 treatment for both N- and P-limited Microcystis, which may explain their increased resistance against H2O2. At high light, Microcystis was more sensitive to H2O2 than at low light, and differences in the decline of the photosynthetic yield between nutrient-replete and nutrient-limited Microcystis exposed to H2O2 were less pronounced. Leakage of microcystin was stronger and faster from nutrient-replete than from N- and P-limited Microcystis. Overall, this study provides insight in the sensitivity of harmful cyanobacteria to H2O2 under various environmental conditions.
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Affiliation(s)
- Giovanni Sandrini
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Tim Piel
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Tianshuo Xu
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Emily White
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Hongjie Qin
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Pieter C Slot
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Jef Huisman
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands
| | - Petra M Visser
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, the Netherlands.
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26
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McKindles KM, Manes MA, DeMarco JR, McClure A, McKay RM, Davis TW, Bullerjahn GS. Dissolved Microcystin Release Coincident with Lysis of a Bloom Dominated by Microcystis spp. in Western Lake Erie Attributed to a Novel Cyanophage. Appl Environ Microbiol 2020; 86:e01397-20. [PMID: 32859600 PMCID: PMC7642080 DOI: 10.1128/aem.01397-20] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 08/25/2020] [Indexed: 11/20/2022] Open
Abstract
Western Lake Erie (Laurentian Great Lakes) is prone to annual cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis spp. that often yield microcystin toxin concentrations exceeding the federal EPA recreational contact advisory of 8 μg liter-1 In August 2014, microcystin levels were detected in finished drinking water above the World Health Organization 1.0 μg liter-1 threshold for consumption, leading to a 2-day disruption in the supply of drinking water for >400,000 residents of Toledo, Ohio (USA). Subsequent metatranscriptomic analysis of the 2014 bloom event provided evidence that release of toxin into the water supply was likely caused by cyanophage lysis that transformed a portion of the intracellular microcystin pool into the dissolved fraction, rendering it more difficult to eliminate during treatment. In August 2019, a similar increase in dissolved microcystins at the Toledo water intake was coincident with a viral lytic event caused by a phage consortium different in composition from what was detected following the 2014 Toledo water crisis. The most abundant viral sequence in metagenomic data sets was a scaffold from a putative member of the Siphoviridae, distinct from the Ma-LMM01-like Myoviridae that are typically documented to occur in western Lake Erie. This study provides further evidence that viral activity in western Lake Erie plays a significant role in transformation of microcystins from the particulate to the dissolved fraction and therefore requires monitoring efforts from local water treatment plants. Additionally, identification of multiple lytic cyanophages will enable the development of a quantitative PCR toolbox to assess viral activity during cHABs.IMPORTANCE Viral attack on cHABs may contribute to changes in community composition during blooms, as well as bloom decline, yet loss of bloom biomass does not eliminate the threat of cHAB toxicity. Rather, it may increase risks to the public by delivering a pool of dissolved toxin directly into water treatment utilities when the dominating Microcystis spp. are capable of producing microcystins. Detecting, characterizing, and quantifying the major cyanophages involved in lytic events will assist water treatment plant operators in making rapid decisions regarding the pool of microcystins entering the plant and the corresponding best practices to neutralize the toxin.
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Affiliation(s)
- Katelyn M McKindles
- Department of Biological Sciences and Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA
| | - Makayla A Manes
- Department of Biological Sciences and Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA
| | - Jonathan R DeMarco
- Department of Biological Sciences and Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA
| | - Andrew McClure
- Division of Water Treatment for the City of Toledo, Toledo, Ohio, USA
| | - R Michael McKay
- Department of Biological Sciences and Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA
- Great Lakes Institute for Environmental Research, University of Windsor, Windsor, Ontario, Canada
| | - Timothy W Davis
- Department of Biological Sciences and Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA
- Center for Great Lakes and Watershed Studies, Bowling Green State University, Bowling Green, Ohio, USA
| | - George S Bullerjahn
- Department of Biological Sciences and Great Lakes Center for Fresh Waters and Human Health, Bowling Green State University, Bowling Green, Ohio, USA
- Center for Great Lakes and Watershed Studies, Bowling Green State University, Bowling Green, Ohio, USA
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27
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Yuan J, Kim HJ, Filstrup CT, Guo B, Imerman P, Ensley S, Yoon KJ. Utility of a PCR-based method for rapid and specific detection of toxigenic Microcystis spp. in farm ponds. J Vet Diagn Invest 2020; 32:369-381. [PMID: 32306863 PMCID: PMC7377613 DOI: 10.1177/1040638720916156] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Microcystis is a widespread freshwater cyanobacterium that can produce microcystin, a potent hepatotoxin harmful to animals and humans. Therefore, it is crucial to monitor for the presence of toxigenic Microcystis spp. to provide early warning of potential microcystin contamination. Microscopy, which has been used traditionally to identify Microcystis spp., cannot differentiate toxigenic from non-toxigenic Microcystis. We developed a PCR-based method to detect toxigenic Microcystis spp. based on detection of the microcystin synthetase C (mcyC) gene and 16S rRNA gene. Specificity was validated against toxic and nontoxic M. aeruginosa strains, as well as 4 intergeneric freshwater cyanobacterial strains. Analytical sensitivity was as low as 747 fg/µL genomic DNA (or 3 cells/µL) for toxic M. aeruginosa. Furthermore, we tested 60 water samples from 4 farm ponds providing drinking water to swine facilities in the midwestern United States using this method. Although all water samples were positive for Microcystis spp. (i.e., 16S rRNA gene), toxigenic Microcystis spp. were detected in only 34 samples (57%). Seventeen water samples contained microcystin (0.1-9.1 μg/L) determined with liquid chromatography-mass spectrometry, of which 14 samples (82%) were positive for mcyC. A significant correlation was found between the presence of toxigenic Microcystis spp. and microcystin in water samples (p = 0.0004). Our PCR method can be a low-cost molecular tool for rapid and specific identification of toxigenic Microcystis spp. in farm ponds, improving detection of microcystin contamination, and ensuring water safety for farm animals.
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Affiliation(s)
- Jian Yuan
- Departments of Veterinary Diagnostic and Production Animal Medicine (Yuan, Guo, Imerman, Ensley, Yoon), Iowa State University, Ames, IA
- Food Science and Human Nutrition (Kim), Iowa State University, Ames, IA
- Ecology, Evolution and Organismal Biology (Filstrup), Iowa State University, Ames, IA
- Current addresses: Department of Anatomy and Physiology, Kansas State University, Manhattan, KS (Ensley)
- Department of Food Engineering, Mokpo National University, Muan, Republic of Korea (Kim)
- Large Lakes Observatory and Minnesota Sea Grant, University of Minnesota–Duluth, Duluth, MN (Filstrup)
| | - Hyun-Joong Kim
- Departments of Veterinary Diagnostic and Production Animal Medicine (Yuan, Guo, Imerman, Ensley, Yoon), Iowa State University, Ames, IA
- Food Science and Human Nutrition (Kim), Iowa State University, Ames, IA
- Ecology, Evolution and Organismal Biology (Filstrup), Iowa State University, Ames, IA
- Current addresses: Department of Anatomy and Physiology, Kansas State University, Manhattan, KS (Ensley)
- Department of Food Engineering, Mokpo National University, Muan, Republic of Korea (Kim)
- Large Lakes Observatory and Minnesota Sea Grant, University of Minnesota–Duluth, Duluth, MN (Filstrup)
| | - Christopher T. Filstrup
- Departments of Veterinary Diagnostic and Production Animal Medicine (Yuan, Guo, Imerman, Ensley, Yoon), Iowa State University, Ames, IA
- Food Science and Human Nutrition (Kim), Iowa State University, Ames, IA
- Ecology, Evolution and Organismal Biology (Filstrup), Iowa State University, Ames, IA
- Current addresses: Department of Anatomy and Physiology, Kansas State University, Manhattan, KS (Ensley)
- Department of Food Engineering, Mokpo National University, Muan, Republic of Korea (Kim)
- Large Lakes Observatory and Minnesota Sea Grant, University of Minnesota–Duluth, Duluth, MN (Filstrup)
| | - Baoqing Guo
- Departments of Veterinary Diagnostic and Production Animal Medicine (Yuan, Guo, Imerman, Ensley, Yoon), Iowa State University, Ames, IA
- Food Science and Human Nutrition (Kim), Iowa State University, Ames, IA
- Ecology, Evolution and Organismal Biology (Filstrup), Iowa State University, Ames, IA
- Current addresses: Department of Anatomy and Physiology, Kansas State University, Manhattan, KS (Ensley)
- Department of Food Engineering, Mokpo National University, Muan, Republic of Korea (Kim)
- Large Lakes Observatory and Minnesota Sea Grant, University of Minnesota–Duluth, Duluth, MN (Filstrup)
| | - Paula Imerman
- Departments of Veterinary Diagnostic and Production Animal Medicine (Yuan, Guo, Imerman, Ensley, Yoon), Iowa State University, Ames, IA
- Food Science and Human Nutrition (Kim), Iowa State University, Ames, IA
- Ecology, Evolution and Organismal Biology (Filstrup), Iowa State University, Ames, IA
- Current addresses: Department of Anatomy and Physiology, Kansas State University, Manhattan, KS (Ensley)
- Department of Food Engineering, Mokpo National University, Muan, Republic of Korea (Kim)
- Large Lakes Observatory and Minnesota Sea Grant, University of Minnesota–Duluth, Duluth, MN (Filstrup)
| | - Steve Ensley
- Departments of Veterinary Diagnostic and Production Animal Medicine (Yuan, Guo, Imerman, Ensley, Yoon), Iowa State University, Ames, IA
- Food Science and Human Nutrition (Kim), Iowa State University, Ames, IA
- Ecology, Evolution and Organismal Biology (Filstrup), Iowa State University, Ames, IA
- Current addresses: Department of Anatomy and Physiology, Kansas State University, Manhattan, KS (Ensley)
- Department of Food Engineering, Mokpo National University, Muan, Republic of Korea (Kim)
- Large Lakes Observatory and Minnesota Sea Grant, University of Minnesota–Duluth, Duluth, MN (Filstrup)
| | - Kyoung-Jin Yoon
- Kyoung-Jin Yoon, Veterinary Medical Research Institute, 1907 ISU-C Drive, Ames, IA 50011.
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28
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Wei Y, Xia X. Unique Shine-Dalgarno Sequences in Cyanobacteria and Chloroplasts Reveal Evolutionary Differences in Their Translation Initiation. Genome Biol Evol 2020; 11:3194-3206. [PMID: 31621842 PMCID: PMC6847405 DOI: 10.1093/gbe/evz227] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/15/2019] [Indexed: 12/12/2022] Open
Abstract
Microorganisms require efficient translation to grow and replicate rapidly, and translation is often rate-limited by initiation. A prominent feature that facilitates translation initiation in bacteria is the Shine-Dalgarno (SD) sequence. However, there is much debate over its conservation in Cyanobacteria and in chloroplasts which presumably originated from endosymbiosis of ancient Cyanobacteria. Elucidating the utilization of SD sequences in Cyanobacteria and in chloroplasts is therefore important to understand whether 1) SD role in Cyanobacterial translation has been reduced prior to chloroplast endosymbiosis or 2) translation in Cyanobacteria and in plastid has been subjected to different evolutionary pressures. To test these alternatives, we employed genomic, proteomic, and transcriptomic data to trace differences in SD usage among Synechocystis species, Microcystis aeruginosa, cyanophages, Nicotiana tabacum chloroplast, and Arabidopsis thaliana chloroplast. We corrected their mis-annotated 16S rRNA 3' terminus using an RNA-Seq-based approach to determine their SD/anti-SD locational constraints using an improved measurement DtoStart. We found that cyanophages well-mimic Cyanobacteria in SD usage because both have been under the same selection pressure for SD-mediated initiation. Whereas chloroplasts lost this similarity because the need for SD-facilitated initiation has been reduced in plastids having much reduced genome size and different ribosomal proteins as a result of host-symbiont coevolution. Consequently, SD sequence significantly increases protein expression in Cyanobacteria but not in chloroplasts, and only Cyanobacterial genes compensate for a lack of SD sequence by having weaker secondary structures at the 5' UTR. Our results suggest different evolutionary pressures operate on translation initiation in Cyanobacteria and in chloroplast.
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Affiliation(s)
- Yulong Wei
- Department of Biology, University of Ottawa, Ontario, Canada
| | - Xuhua Xia
- Department of Biology, University of Ottawa, Ontario, Canada.,Ottawa Institute of Systems Biology, University of Ottawa, Ontario, Canada
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29
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Khumalo MJ, Nzuza N, Padayachee T, Chen W, Yu JH, Nelson DR, Syed K. Comprehensive Analyses of Cytochrome P450 Monooxygenases and Secondary Metabolite Biosynthetic Gene Clusters in Cyanobacteria. Int J Mol Sci 2020; 21:ijms21020656. [PMID: 31963856 PMCID: PMC7014017 DOI: 10.3390/ijms21020656] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2019] [Revised: 01/13/2020] [Accepted: 01/15/2020] [Indexed: 12/12/2022] Open
Abstract
The prokaryotic phylum Cyanobacteria are some of the oldest known photosynthetic organisms responsible for the oxygenation of the earth. Cyanobacterial species have been recognised as a prosperous source of bioactive secondary metabolites with antibacterial, antiviral, antifungal and/or anticancer activities. Cytochrome P450 monooxygenases (CYPs/P450s) contribute to the production and diversity of various secondary metabolites. To better understand the metabolic potential of cyanobacterial species, we have carried out comprehensive analyses of P450s, predicted secondary metabolite biosynthetic gene clusters (BGCs), and P450s located in secondary metabolite BGCs. Analysis of the genomes of 114 cyanobacterial species identified 341 P450s in 88 species, belonging to 36 families and 79 subfamilies. In total, 770 secondary metabolite BGCs were found in 103 cyanobacterial species. Only 8% of P450s were found to be part of BGCs. Comparative analyses with other bacteria Bacillus, Streptomyces and mycobacterial species have revealed a lower number of P450s and BGCs and a percentage of P450s forming part of BGCs in cyanobacterial species. A mathematical formula presented in this study revealed that cyanobacterial species have the highest gene-cluster diversity percentage compared to Bacillus and mycobacterial species, indicating that these diverse gene clusters are destined to produce different types of secondary metabolites. The study provides fundamental knowledge of P450s and those associated with secondary metabolism in cyanobacterial species, which may illuminate their value for the pharmaceutical and cosmetics industries.
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Affiliation(s)
- Makhosazana Jabulile Khumalo
- Department of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Zululand, KwaDlangezwa 3886, South Africa; (M.J.K.); (N.N.); (T.P.)
| | - Nomfundo Nzuza
- Department of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Zululand, KwaDlangezwa 3886, South Africa; (M.J.K.); (N.N.); (T.P.)
| | - Tiara Padayachee
- Department of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Zululand, KwaDlangezwa 3886, South Africa; (M.J.K.); (N.N.); (T.P.)
| | - Wanping Chen
- Department of Molecular Microbiology and Genetics, University of Göttingen, 37077 Göttingen, Germany;
| | - Jae-Hyuk Yu
- Department of Bacteriology, University of Wisconsin-Madison, 3155 MSB, 1550 Linden Drive, Madison, WI 53706, USA;
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - David R. Nelson
- Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA
- Correspondence: (D.R.N.); (K.S.)
| | - Khajamohiddin Syed
- Department of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Zululand, KwaDlangezwa 3886, South Africa; (M.J.K.); (N.N.); (T.P.)
- Correspondence: (D.R.N.); (K.S.)
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30
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Draft Genome Sequence of the Non-Microcystin-Producing Microcystis aeruginosa Strain KLA2, Isolated from a Freshwater Reservoir in Northern California, USA. Microbiol Resour Announc 2020; 9:9/3/e01086-19. [PMID: 31948955 PMCID: PMC6965573 DOI: 10.1128/mra.01086-19] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We report a draft genome sequence for Microcystis aeruginosa KLA2. The total draft genome size is 5,213,465 bp with a GC content of 42.5%. The genome does not have genes indicative of microcystin production but does contain genes indicative of production of several other secondary metabolites. We report a draft genome sequence for Microcystis aeruginosa KLA2. The total draft genome size is 5,213,465 bp with a GC content of 42.5%. The genome does not have genes indicative of microcystin production but does contain genes indicative of production of several other secondary metabolites.
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31
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Hennon GMM, Dyhrman ST. Progress and promise of omics for predicting the impacts of climate change on harmful algal blooms. HARMFUL ALGAE 2020; 91:101587. [PMID: 32057337 DOI: 10.1016/j.hal.2019.03.005] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Accepted: 03/10/2019] [Indexed: 06/10/2023]
Abstract
Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have transformed that data landscape of many fields including the study of HABs. Advances in technology have facilitated the creation of many publicly available omics datasets that are complementary and shed new light on the mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. With the ever-increasing omics databases, leveraging these data for understanding climate-driven HAB dynamics will be increasingly powerful.
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Affiliation(s)
- Gwenn M M Hennon
- Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States; College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States
| | - Sonya T Dyhrman
- Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States; Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States.
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32
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Yamaguchi H, Suzuki S, Osana Y, Kawachi M. Genomic Characteristics of the Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa NIES-102. J Genomics 2020; 8:1-6. [PMID: 31892993 PMCID: PMC6930136 DOI: 10.7150/jgen.40978] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 11/20/2019] [Indexed: 01/10/2023] Open
Abstract
Microcystis aeruginosa, a bloom-forming cyanobacterium distributed mainly in freshwater environments, can be divided into at least 12 groups (A-K and X) based on multi-locus phylogenetic analyses. In this study, we characterized the genome of microcystin-producing M. aeruginosa NIES-102, assigned to group A, isolated from Lake Kasumigaura, Japan. The complete genome sequence of M. aeruginosa NIES-102 comprised a 5.87-Mbp circular chromosome containing 5,330 coding sequences. The genome was the largest among all sequenced genomes for the species. In a comparison with the genome of M. aeruginosa NIES-843, which belongs to the same group, the microcystin biosynthetic gene cluster and CRISPR-Cas locus were highly similar. A synteny analysis revealed small-scale rearrangements between the two genomes. Genes encoding transposases were more abundant in these two genomes than in other Microcystis genomes. Our results improve our understanding of structural genomic changes and adaptation to a changing environment in the species.
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Affiliation(s)
- Haruyo Yamaguchi
- Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506, Japan
| | - Shigekatsu Suzuki
- Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506, Japan
| | - Yasunori Osana
- Department of Electrical and Electronics Engineering, University of the Ryukyus, 1 Senbaru, Nishihara-cho, Okinawa 903-0213, Japan
| | - Masanobu Kawachi
- Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506, Japan
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Control of the buoyancy of Microcystis aeruginosa via colony formation induced by regulating extracellular polysaccharides and cationic ions. SN APPLIED SCIENCES 2019. [DOI: 10.1007/s42452-019-1637-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
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Gao Y, Shimizu K, Amano C, Wang X, Pham TL, Sugiura N, Utsumi M. Response of microcystin biosynthesis and its biosynthesis gene cluster transcription in Microcystis aeruginosa on electrochemical oxidation. ENVIRONMENTAL TECHNOLOGY 2019; 40:3593-3601. [PMID: 29806796 DOI: 10.1080/09593330.2018.1482371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Accepted: 05/23/2018] [Indexed: 06/08/2023]
Abstract
Microcystin-LR (MC-LR), which is one of the most commonly found microcystins (MCs) in fresh water, has been proved to be a potential tumour promoter and classified as 2B by the International Agency for Research on Cancer. MC-LR decomposition and inhibition of MC-LR production in Microcystis aeruginosa were investigated under electrolysis condition using an electrolysis cell consisting of Ti/Pt electrodes and Nafion membrane. The relationship between the decrease in MC-LR concentration and transcription of MC-LR synthesis gene clusters was determined by performing real-time reverse transcription polymerase chain reaction (RT-qPCR) to monitor changes in the levels of transcription encoding mcyB and mcyD (cDNA to DNA) in M. aeruginosa NIES 1086 under electrolysis condition and three different conditions (i.e. oxygenated, air aerated and unaerated) as controls. Cell density decreased from day 2 under electrolysis than under the three controls. Intracellular MC-LR concentration was approximately 33 fg cell-1 under electrolysis from days 4 to 8, while those in the other conditions ranged in 40-50 fg cell-1. The mcyB transcription continuously decreased from day 2 to nondetectable level in day 6 under electrolysis, while this transcription was stabilised under the three controls. This result suggested that oxidative stress, such as hydroxyl radicals, played an important role in the down-regulation of mcyB and mcyD gene transcription level and the MC-LR concentration and cell density of M. aeruginosa.
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Affiliation(s)
- Yu Gao
- College of Chemical and Environmental Engineering, Shandong University of Science and Technology , Qingdao , People's Republic of China
- Graduate School of Life and Environment Science, University of Tsukuba , Tsukuba , Japan
| | - Kazuya Shimizu
- Faculty of Life Science, Toyo University , Gunma , Japan
| | - Chie Amano
- Graduate School of Life and Environment Science, University of Tsukuba , Tsukuba , Japan
- Department of Limnology and Bio-Oceanography, University of Vienna , Wien , Austria
| | - Xin Wang
- Graduate School of Life and Environment Science, University of Tsukuba , Tsukuba , Japan
- School of Envrionment and Energy, Peking University , Shenzhen , People's Republic of China
| | - Thanh Luu Pham
- Graduate School of Life and Environment Science, University of Tsukuba , Tsukuba , Japan
| | - Norio Sugiura
- Graduate School of Life and Environment Science, University of Tsukuba , Tsukuba , Japan
- Malaysia-Japan International Institute of Technology, University Technology Malaysia , Johor Bahru , Malaysia
| | - Motoo Utsumi
- Graduate School of Life and Environment Science, University of Tsukuba , Tsukuba , Japan
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Tu J, Chen L, Gao S, Zhang J, Bi C, Tao Y, Lu N, Lu Z. Obtaining Genome Sequences of Mutualistic Bacteria in Single Microcystis Colonies. Int J Mol Sci 2019; 20:ijms20205047. [PMID: 31614621 PMCID: PMC6829522 DOI: 10.3390/ijms20205047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2019] [Revised: 10/09/2019] [Accepted: 10/10/2019] [Indexed: 01/01/2023] Open
Abstract
Cells of Microcystis are associated with heterotrophic bacteria and organized in colonies in natural environment, which are basic elements in the mass occurrence of cyanobacterial species. Analyzing these colonies by using metagenomics is helpful to understand species composition and relationship. Meanwhile, the difference in population abundance among Microcystis colonies could be used to recover genome bins from metagenome assemblies. Herein, we designed a pipeline to obtain high-quality genomes of mutualistic bacteria from single natural Microcystis colonies. Single colonies were lysed, and then amplified by using multiple displacement amplification to overcome the DNA quantity limit. A two-step assembly was performed after sequencing and scaffolds were grouped into putative bins based on their differential-coverage among species. We analyzed six natural colonies of three prevailing Microcystis species from Lake Taihu. Clustering results proved that colonies of the same species were similar in the microbial community composition. Eight putative population genome bins with wide bacterial diversity and different GC content were identified based on coverage difference among colonies. At the phylum level, proteobacteria was the most abundant besides cyanobacteria. Six of the population bins were further refined into nearly complete genomes (completeness > 90%).
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Affiliation(s)
- Jing Tu
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
| | - Liang Chen
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
| | - Shen Gao
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
| | - Junyi Zhang
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
- Wuxi Environmental Monitoring Center, Wuxi 210096, China.
| | - Changwei Bi
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
| | - Yuhan Tao
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
| | - Na Lu
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
| | - Zuhong Lu
- State Key Lab of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
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Schweitzer-Natan O, Ofek-Lalzar M, Sher D, Sukenik A. Particle-Associated Microbial Community in a Subtropical Lake During Thermal Mixing and Phytoplankton Succession. Front Microbiol 2019; 10:2142. [PMID: 31572346 PMCID: PMC6753980 DOI: 10.3389/fmicb.2019.02142] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 08/30/2019] [Indexed: 12/11/2022] Open
Abstract
Ecosystem dynamics in monomictic lakes are characterized by seasonal thermal mixing and stratification. These physical processes bring about seasonal variations in nutrients and organic matter fluxes, affecting the biogeochemical processes that occur in the water column. Physical and chemical dynamics are generally reflected in seasonal structural changes in the phytoplankton and bacterio-plankton community. In this study, we analyzed, using 16S rRNA amplicon sequencing, the structure of the bacterial community associated with large particles (>20 μm) in Lake Kinneret (Sea of Galilee, Israel), and its associations to phytoplankton populations. The study was carried out during late winter and early spring, a highly dynamic period in terms of thermal mixing, nutrient availability, and shifts in phytoplankton composition. Structural changes in the bacterioplankton population corresponded with limnological variations in the lake. In terms of the entire heterotrophic community, the structural patterns of particle-associated bacteria were mainly correlated with abiotic factors such as pH, ammonia, water temperature and nitrate. However, analysis of microbial taxon-specific correlations with phytoplankton species revealed a strong potential link between specific bacterial populations and the presence of different phytoplankton species, such as the cyanobacterium Microcystis, as well as the dinoflagellates Peridinium and Peridiniopsis. We found that Brevundimonas, a common freshwater genus, and Bdellovibrio, a well-known Gram-negative bacteria predator, were positively associated to Microcystis, suggesting a potentially important role of these three taxa in the microbial ecology of the lake. Our results show that the dynamics of environmental abiotic conditions, rather than specific phytoplankton assemblages, are the main factors positively correlated with changes in the community structure as a whole. Nevertheless, some specific bacteria may interact and be linked with specific phytoplankton, which may potentially control the dynamic patterns of the microbial community.
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Affiliation(s)
- Orna Schweitzer-Natan
- Kinneret Limnological Laboratory, Israel Oceanographic and Limnological Research, Haifa, Israel
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | | | - Daniel Sher
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | - Assaf Sukenik
- Kinneret Limnological Laboratory, Israel Oceanographic and Limnological Research, Haifa, Israel
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Davenport EJ, Neudeck MJ, Matson PG, Bullerjahn GS, Davis TW, Wilhelm SW, Denney MK, Krausfeldt LE, Stough JMA, Meyer KA, Dick GJ, Johengen TH, Lindquist E, Tringe SG, McKay RML. Metatranscriptomic Analyses of Diel Metabolic Functions During a Microcystis Bloom in Western Lake Erie (United States). Front Microbiol 2019; 10:2081. [PMID: 31551998 PMCID: PMC6746948 DOI: 10.3389/fmicb.2019.02081] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 08/23/2019] [Indexed: 12/02/2022] Open
Abstract
This study examined diel shifts in metabolic functions of Microcystis spp. during a 48-h Lagrangian survey of a toxin-producing cyanobacterial bloom in western Lake Erie in the aftermath of the 2014 Toledo Water Crisis. Transcripts mapped to the genomes of recently sequenced lower Great Lakes Microcystis isolates showed distinct patterns of gene expression between samples collected across day (10:00 h, 16:00 h) and night (22:00 h, 04:00 h). Daytime transcripts were enriched in functions related to Photosystem II (e.g., psbA), nitrogen and phosphate acquisition, cell division (ftsHZ), heat shock response (dnaK, groEL), and uptake of inorganic carbon (rbc, bicA). Genes transcribed during nighttime included those involved in phycobilisome protein synthesis and Photosystem I core subunits. Hierarchical clustering and principal component analysis (PCA) showed a tightly clustered group of nighttime expressed genes, whereas daytime transcripts were separated from each other over the 48-h duration. Lack of uniform clustering within the daytime transcripts suggested that the partitioning of gene expression in Microcystis is dependent on both circadian regulation and physicochemical changes within the environment.
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Affiliation(s)
- Emily J. Davenport
- Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, United States,Cooperative Institute for Great Lakes Research (CIGLR), University of Michigan, Ann Arbor, MI, United States
| | - Michelle J. Neudeck
- Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, United States
| | - Paul G. Matson
- Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, United States
| | - George S. Bullerjahn
- Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, United States,*Correspondence: George S. Bullerjahn,
| | - Timothy W. Davis
- Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, United States
| | - Steven W. Wilhelm
- Department of Microbiology, The University of Tennessee, Knoxville, Knoxville, TN, United States
| | - Maddie K. Denney
- Graduate School of Genome Science and Technology, The University of Tennessee, Knoxville, Knoxville, TN, United States
| | - Lauren E. Krausfeldt
- Department of Microbiology, The University of Tennessee, Knoxville, Knoxville, TN, United States
| | - Joshua M. A. Stough
- Department of Microbiology, The University of Tennessee, Knoxville, Knoxville, TN, United States
| | - Kevin A. Meyer
- Cooperative Institute for Great Lakes Research (CIGLR), University of Michigan, Ann Arbor, MI, United States,Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, United States
| | - Gregory J. Dick
- Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, United States
| | - Thomas H. Johengen
- Cooperative Institute for Great Lakes Research (CIGLR), University of Michigan, Ann Arbor, MI, United States
| | - Erika Lindquist
- U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA, United States
| | - Susannah G. Tringe
- U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA, United States
| | - Robert Michael L. McKay
- Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, United States,Great Lakes Institute for Environmental Research, University of Windsor, Windsor, ON, Canada
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Wang Z, Gui H, Luo Z, Zhen Z, Yan C, Xing B. Dissolved organic phosphorus enhances arsenate bioaccumulation and biotransformation in Microcystis aeruginosa. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 252:1755-1763. [PMID: 31295694 DOI: 10.1016/j.envpol.2019.06.126] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 06/29/2019] [Accepted: 06/29/2019] [Indexed: 06/09/2023]
Abstract
Only limited information is available on the effects of dissolved organic phosphorus (DOP) on arsenate (As(V)) bioaccumulation and biotransformation in organisms. In this study, we examined the influence of three different DOP forms (β-sodium glycerophosphate (βP), adenosine 5'-triphosphate (ATP), and D-Glucose-6-phosphate disodium (GP) salts) and inorganic phosphate (IP) on As(V) toxicity, accumulation, and biotransformation in Microcystis aeruginosa. Results showed that M. aeruginosa utilized the three DOP forms to sustain its growth. At a subcellular level, the higher phosphorus (P) distribution in metal-sensitive fractions (MSF) observed in the IP treatments could explain the comparatively lower toxic stress of algae compared to the DOP treatments. Meanwhile, the higher MSF distribution of arsenic (As) in M. aeruginosa in the presence of DOP could explain the higher toxicity with lower 96-h half maximal effective concentration (EC50) values. Although we observed As(V) and P discrimination in M. aeruginosa under IP treatments with high intracellular P/As, we did not find this discrimination under the DOP treatments. As accumulation in algal cells was therefore greatly enhanced by DOP, especially βP, given its lower transformation rate to phosphate compared to ATP and GP in media. Additionally, As(V) reduction and, subsequently, As(III) methylation were greatly facilitated in M. aeruginosa by the presence of DOP, particularly GP, which was confirmed by the higher relative expression of its two functional genes (arsC and arsM). Our findings indicate that As(V) accumulation and its subsequent biotransformation were enhanced by organic P forms, which provides new insight into how DOP modulates As metabolism in algae.
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Affiliation(s)
- Zhenhong Wang
- College of Chemistry and Environment, Fujian Province Key Laboratory of Modern Analytical Science and Separation Technology, Minnan Normal University, Zhangzhou 363000, China; National Engineering Research Center of Coal Mine Water Hazard Controlling (Suzhou University), Suzhou, Anhui, 234000, China; Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003, USA.
| | - Herong Gui
- National Engineering Research Center of Coal Mine Water Hazard Controlling (Suzhou University), Suzhou, Anhui, 234000, China
| | - Zhuanxi Luo
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003, USA.
| | - Zhuo Zhen
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Changzhou Yan
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Baoshan Xing
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003, USA
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Jackrel SL, White JD, Evans JT, Buffin K, Hayden K, Sarnelle O, Denef VJ. Genome evolution and host‐microbiome shifts correspond with intraspecific niche divergence within harmful algal bloom‐forming
Microcystis aeruginosa. Mol Ecol 2019; 28:3994-4011. [DOI: 10.1111/mec.15198] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 01/31/2023]
Affiliation(s)
- Sara L. Jackrel
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
| | - Jeffrey D. White
- Department of Biology Framingham State University Framingham MA USA
- Department of Fisheries and Wildlife Michigan State University East Lansing MI USA
| | - Jacob T. Evans
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
| | - Kyle Buffin
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
| | - Kristen Hayden
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
| | - Orlando Sarnelle
- Department of Fisheries and Wildlife Michigan State University East Lansing MI USA
| | - Vincent J. Denef
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
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40
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Yu Y, Zeng Y, Li J, Yang C, Zhang X, Luo F, Dai X. An algicidal Streptomyces amritsarensis strain against Microcystis aeruginosa strongly inhibits microcystin synthesis simultaneously. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 650:34-43. [PMID: 30195130 DOI: 10.1016/j.scitotenv.2018.08.433] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2018] [Revised: 08/29/2018] [Accepted: 08/31/2018] [Indexed: 06/08/2023]
Abstract
Microcystis aeruginosa and hepatotoxic microcystins produced by it have posed a severe threat to aquatic ecological security and human health. In this study a Streptomyces amritsarensis HG-16, showing high algicidal activity against M. aeruginosa and strong inhibitory effect on microcystin synthesis, was obtained by screening some anti-Fusarium sp. microbial strains isolated before in our laboratory. HG-16 bound cyanobacterial cells by mycelia to form flocs and killed M. aeruginosa by secreting active substances, which were proteinase K resistant and stable in the temperature range of 35-75 °C and pH range of 3-11. HG-16 removed M. aeruginosa of 105 and 106 cell mL-1 cell densities in similar rate and was active against all the tested harmful unicellular and filamentous cyanobacteria. Results of differential gene expression analysis indicated that HG-16 affected the photosynthesis system and microcystin synthesis of M. aeruginosa. Accordingly, the algicidal activity of HG-16 was light-dependent, and microcystin synthesis of M. aeruginosa decreased by 91.2% with HG-16 treatment. Thus, it is promising to utilize HG-16 to mitigate harmful cyanobacterial blooms, inhibit microcystin synthesis and control plant disease caused by Fusarium.spp. through irrigating farmland with eutrophic water applied HG-16.
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Affiliation(s)
- Yan Yu
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Yudie Zeng
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Jing Li
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Caiyun Yang
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Xiaohui Zhang
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Feng Luo
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China.
| | - Xianzhu Dai
- Chongqing Key Laboratory of Bio-resource development for Bioenergy, College of Resources and Environment, Southwest University, Chongqing 400715, China.
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41
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Cullen A, Pearson LA, Mazmouz R, Liu T, Soeriyadi AH, Ongley SE, Neilan BA. Heterologous expression and biochemical characterisation of cyanotoxin biosynthesis pathways. Nat Prod Rep 2019; 36:1117-1136. [DOI: 10.1039/c8np00063h] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This review discusses cyanotoxin biosynthetic pathways and highlights the heterologous expression and biochemical studies used to characterise them.
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Affiliation(s)
- Alescia Cullen
- School of Environmental and Life Sciences
- University of Newcastle
- Callaghan 2308
- Australia
| | - Leanne A. Pearson
- School of Environmental and Life Sciences
- University of Newcastle
- Callaghan 2308
- Australia
| | - Rabia Mazmouz
- School of Environmental and Life Sciences
- University of Newcastle
- Callaghan 2308
- Australia
| | - Tianzhe Liu
- School of Biotechnology and Biomolecular Sciences
- The University of New South Wales
- Sydney 2052
- Australia
| | - Angela H. Soeriyadi
- School of Biotechnology and Biomolecular Sciences
- The University of New South Wales
- Sydney 2052
- Australia
| | - Sarah E. Ongley
- School of Environmental and Life Sciences
- University of Newcastle
- Callaghan 2308
- Australia
| | - Brett A. Neilan
- School of Environmental and Life Sciences
- University of Newcastle
- Callaghan 2308
- Australia
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42
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Mikheyeva TM, Adamovich BV, Zhukova TV, Savich IV, Belykh OI, Sorokovikova EG, Kuzmin AV, Fedorova GA, Kovalevskaya RZ, Selivonchik IN, Dubko NV, Luk’yanova EV. Phytoplankton of Lake Bol’shie Shvakshty (Belarus) during the Shift of the Ecosystem from a Macrophyte–Weakly Eutrophic to a Phytoplankton–Hypereutrophic State. CONTEMP PROBL ECOL+ 2018. [DOI: 10.1134/s1995425518060057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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43
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Sun LW, Jiang WJ, Zhang JY, Wang WQ, Du Y, Sato H, Kawachi M, Yu R. Identification and detection sensitivity of Microcystis aeruginosa from mixed and field samples using MALDI-TOF MS. ENVIRONMENTAL MONITORING AND ASSESSMENT 2018; 190:712. [PMID: 30415457 DOI: 10.1007/s10661-018-7093-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Accepted: 10/30/2018] [Indexed: 06/09/2023]
Abstract
To verify the applicability of identifying Microcystis aeruginosa by matrix-assisted laser desorption-ionization-time-of-flight mass spectrometry (MALDI-TOF MS), mixed and field samples were employed to study the sensitivity and the analysis power, respectively. Series diluted samples and artificially mixed samples by the M. aeruginosa NIES-843 strain were designed to verify the sensitivity. The lowest detection limit was 1.955 × 106 cells in pure samples, while for mixed samples, the lowest detection limit and ratio of NIES-843 strain were 2.88 × 106 cells and 33.7%, respectively. The results provided a reference for the reasonable volume of the water sample in which the M. aeruginosa could be detected. Ribosomal protein biomarkers for identifying M. aeruginosa which were successfully detected from the field samples in Taihu Lake, indicated that the identification of M. aeruginosa by MALDI-TOF MS could be applied in field samples. Furthermore, different genetic types of M. aeruginosa strains were also detected at different locations in Taihu Lake, which revealed the diversity of M. aeruginosa and the detection power of MALDI-TOF MS at the strain level for the field samples. The sensitivity and detection power in the analysis of M. aeruginosa by the MALDI-TOF MS demonstrated the applicability of this method in routine environmental monitoring.
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Affiliation(s)
- Li-Wei Sun
- School of Energy & Environment, Southeast University, Nanjing, Jiangsu, China.
- Taihu Lake Water Environment Engineering Research Center (Wuxi), Southeast University, Wuxi, Jiangsu, China.
| | - Wen-Jing Jiang
- School of Energy & Environment, Southeast University, Nanjing, Jiangsu, China
- Taihu Lake Water Environment Engineering Research Center (Wuxi), Southeast University, Wuxi, Jiangsu, China
| | - Jun-Yi Zhang
- Wuxi Environmental Monitoring Center, Wuxi, Jiangsu, China
| | - Wen-Qian Wang
- School of Energy & Environment, Southeast University, Nanjing, Jiangsu, China
- Taihu Lake Water Environment Engineering Research Center (Wuxi), Southeast University, Wuxi, Jiangsu, China
| | - Yang Du
- School of Energy & Environment, Southeast University, Nanjing, Jiangsu, China
- Taihu Lake Water Environment Engineering Research Center (Wuxi), Southeast University, Wuxi, Jiangsu, China
| | - Hiroaki Sato
- Polymer Chemistry Group, Research Institute for Sustainable Chemistry, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki, Japan
| | - Masanobu Kawachi
- Biodiversity Resource Conservation Section, Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan
| | - Ran Yu
- School of Energy & Environment, Southeast University, Nanjing, Jiangsu, China.
- Taihu Lake Water Environment Engineering Research Center (Wuxi), Southeast University, Wuxi, Jiangsu, China.
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44
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Tang X, Krausfeldt LE, Shao K, LeCleir GR, Stough JMA, Gao G, Boyer GL, Zhang Y, Paerl HW, Qin B, Wilhelm SW. Seasonal Gene Expression and the Ecophysiological Implications of Toxic Microcystis aeruginosa Blooms in Lake Taihu. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:11049-11059. [PMID: 30168717 DOI: 10.1021/acs.est.8b01066] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Harmful cyanobacterial blooms represent an increasing threat to freshwater resources globally. Despite increased research, the physiological basis of how the dominant bloom-forming cyanobacteria, Microcystis spp., proliferate and then maintain high population densities through changing environmental conditions is poorly understood. In this study, we examined the transcriptional profiles of the microbial community in Lake Taihu, China at 9 stations sampled monthly from June to October in 2014. To target Microcystis populations, we collected metatranscriptomic data and mapped reads to the M. aeruginosa NIES 843 genome. Our results revealed significant temporal gene expression patterns, with many genes separating into either early or late bloom clusters. About one-third of genes observed from M. aeruginosa were differentially expressed between these two clusters. Conductivity and nutrient availability appeared to be the environmental factors most strongly associated with these temporal gene expression shifts. Compared with the early bloom season (June and July), genes involved in N and P transport, energy metabolism, translation, and amino acid biosynthesis were down-regulated during the later season (August to October). In parallel, genes involved in regulatory functions as well as transposases and the production of microcystin and extracellular polysaccharides were up-regulated in the later season. Our observation indicates an eco-physiological shift occurs within the Microcystis spp. transcriptome as cells move from the rapid growth of early summer to bloom maintenance in late summer and autumn.
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Affiliation(s)
- Xiangming Tang
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment , Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences , Nanjing , Jiangsu 210008 , China
| | - Lauren E Krausfeldt
- Department of Microbiology , University of Tennessee , Knoxville , Tennessee 37996 , United States
| | - Keqiang Shao
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment , Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences , Nanjing , Jiangsu 210008 , China
| | - Gary R LeCleir
- Department of Microbiology , University of Tennessee , Knoxville , Tennessee 37996 , United States
| | - Joshua M A Stough
- Department of Microbiology , University of Tennessee , Knoxville , Tennessee 37996 , United States
| | - Guang Gao
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment , Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences , Nanjing , Jiangsu 210008 , China
| | - Gregory L Boyer
- Department of Chemistry , SUNY College of Environmental Science and Forestry , Syracuse , New York 13210 , United States
| | - Yunlin Zhang
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment , Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences , Nanjing , Jiangsu 210008 , China
| | - Hans W Paerl
- Institute of Marine Sciences , The University of North Carolina at Chapel Hill , Morehead City , North Carolina 28557 , United States
- College of Environment , Hohai University , Nanjing , Jiangsu 210098 , China
| | - Boqiang Qin
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment , Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences , Nanjing , Jiangsu 210008 , China
| | - Steven W Wilhelm
- Department of Microbiology , University of Tennessee , Knoxville , Tennessee 37996 , United States
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45
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Beversdorf LJ, Rude K, Weirich CA, Bartlett SL, Seaman M, Kozik C, Biese P, Gosz T, Suha M, Stempa C, Shaw C, Hedman C, Piatt JJ, Miller TR. Analysis of cyanobacterial metabolites in surface and raw drinking waters reveals more than microcystin. WATER RESEARCH 2018; 140:280-290. [PMID: 29729580 DOI: 10.1016/j.watres.2018.04.032] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Revised: 04/10/2018] [Accepted: 04/14/2018] [Indexed: 05/26/2023]
Abstract
Freshwater cyanobacterial blooms are becoming increasingly problematic in regions that rely on surface waters for drinking water production. Microcystins (MCs) are toxic peptides produced by multiple cyanobacterial genera with a global occurrence. Cyanobacteria also produce a variety of other toxic and/or otherwise bioactive peptides (TBPs) that have gained less attention including cyanopeptolins (Cpts), anabaenopeptins (Apts), and microginins (Mgn). In this study, we compared temporal and spatial trends of four MCs (MCLR, MCRR, MCYR, MCLA), three Cpts (Cpt1020, Cpt1041, Cpt1007), two Apts (AptF, AptB), and Mgn690 in raw drinking water and at six surface water locations above these drinking water intakes in a eutrophic lake. All four MC congeners and five of six TBPs were detected in lake and raw drinking water. Across all samples, MCLR was the most frequently detected metabolite (100% of samples) followed by MCRR (97%) > Cpt1007 (74%) > MCYR (69%) > AptF (67%) > MCLA (61%) > AptB (54%) > Mgn690 (29%) and Cpt1041 (15%). Mean concentrations of MCs, Apts, and Cpts into two drinking water intakes were 3.9 ± 4.7, 0.14 ± 0.21, and 0.38 ± 0.92, respectively. Mean concentrations in surface water were significantly higher (p < 0.05) than in drinking water intakes for MCs but not for Cpts and Apts. Temporal trends in MCs, Cpts, and Apts in the two raw drinking water intakes were significantly correlated (p < 0.05) with measures of cell abundance (chlorophyll-a, Microcystis cell density), UV absorbance, and turbidity in surface water. This study expands current information about cyanobacterial TBPs that occur in lakes and that enter drinking water treatment plants and underscores the need to determine the fate of less studied cyanobacterial metabolites during drinking water treatment that may exacerbate toxicity of more well-known cyanobacterial toxins.
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Affiliation(s)
- Lucas J Beversdorf
- Joseph J. Zilber School of Public Health, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
| | - Kayla Rude
- Department of Chemistry, Carroll University, Waukesha, WI, USA
| | - Chelsea A Weirich
- Joseph J. Zilber School of Public Health, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
| | - Sarah L Bartlett
- Joseph J. Zilber School of Public Health, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
| | - Mary Seaman
- Joseph J. Zilber School of Public Health, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
| | - Christine Kozik
- Department of Biological Sciences, University of Wisconsin - Milwaukee, WI, USA
| | - Peter Biese
- Menasha Drinking Water Treatment Plant, Menasha, WI, USA
| | - Timothy Gosz
- Menasha Drinking Water Treatment Plant, Menasha, WI, USA
| | - Michael Suha
- Appleton Drinking Water Treatment Plant, Menasha, WI, USA
| | | | | | - Curtis Hedman
- Wisconsin State Laboratory of Hygiene, Madison, WI, USA
| | - Joseph J Piatt
- Department of Chemistry, Carroll University, Waukesha, WI, USA
| | - Todd R Miller
- Joseph J. Zilber School of Public Health, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
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46
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Qu J, Shen L, Zhao M, Li W, Jia C, Zhu H, Zhang Q. Determination of the Role of Microcystis aeruginosa in Toxin Generation Based on Phosphoproteomic Profiles. Toxins (Basel) 2018; 10:toxins10070304. [PMID: 30041444 PMCID: PMC6070999 DOI: 10.3390/toxins10070304] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Revised: 07/12/2018] [Accepted: 07/17/2018] [Indexed: 01/06/2023] Open
Abstract
Microcystis aeruginosa is the most common species responsible for toxic cyanobacterial blooms and is considered a significant contributor to the production of cyanotoxins, particularly the potent liver toxins called microcystins. Numerous studies investigating Microcystis spp. blooms have revealed their deleterious effects in freshwater environments. However, the available knowledge regarding the global phosphoproteomics of M. aeruginosa and their regulatory roles in toxin generation is limited. In this study, we conducted comparative phosphoproteomic profiling of non-toxic and toxin-producing strains of M. aeruginosa. We identified 59 phosphorylation sites in 37 proteins in a non-toxic strain and 26 phosphorylation sites in 18 proteins in a toxin-producing strain. The analysis of protein phosphorylation abundances and functions in redox homeostasis, energy metabolism, light absorption and photosynthesis showed marked differences between the non-toxic and toxin-producing strains of M. aeruginosa, indicating that these processes are strongly related to toxin generation. Moreover, the protein-protein interaction results indicated that BJ0JVG8 can directly interact with the PemK-like toxin protein B0JQN8. Thus, the phosphorylation of B0JQN8 appears to be associated with the regulatory roles of toxins in physiological activity.
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Affiliation(s)
- Jiangqi Qu
- Beijing Key Laboratory of Fishery Biotechnology, Beijing Fisheries Research Institute, Beijing 100068, China.
| | - Liping Shen
- State key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing 100871, China.
| | - Meng Zhao
- Beijing Key Laboratory of Fishery Biotechnology, Beijing Fisheries Research Institute, Beijing 100068, China.
| | - Wentong Li
- Beijing Key Laboratory of Fishery Biotechnology, Beijing Fisheries Research Institute, Beijing 100068, China.
| | - Chengxia Jia
- Beijing Key Laboratory of Fishery Biotechnology, Beijing Fisheries Research Institute, Beijing 100068, China.
| | - Hua Zhu
- Beijing Key Laboratory of Fishery Biotechnology, Beijing Fisheries Research Institute, Beijing 100068, China.
| | - Qingjing Zhang
- Beijing Key Laboratory of Fishery Biotechnology, Beijing Fisheries Research Institute, Beijing 100068, China.
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47
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Hu C, Ludsin SA, Martin JF, Dittmann E, Lee J. Mycosporine-like amino acids (MAAs)-producing Microcystis in Lake Erie: Development of a qPCR assay and insight into its ecology. HARMFUL ALGAE 2018; 77:1-10. [PMID: 30005796 DOI: 10.1016/j.hal.2018.05.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2018] [Revised: 04/22/2018] [Accepted: 05/24/2018] [Indexed: 06/08/2023]
Abstract
Mycosporine-like amino acids (MAAs) are UV-absorbing metabolites found in cyanobacteria. While their protective role from UV in Microcystis has been studied in a laboratory setting, a full understanding of the ecology of MAA-producing versus non-MAA-producing Microcystis in natural environments is lacking. This study presents a new tool for quantifying MAA-producing Microcystis and applies it to obtain insight into the dynamics of MAA-producing and non-MAA-producing Microcystis in Lake Erie. This study first developed a sensitive, specific TaqMan real-time PCR assay that targets MAA synthetase gene C (mysC) of Microcystis (quantitative range: 1.7 × 101 to 1.7 × 107 copies/assay). Using this assay, Microcystis was quantified with a MAA-producing genotype (mysC+) in water samples (n = 96) collected during March-November 2013 from 21 Lake Erie sites (undetectable - 8.4 × 106 copies/ml). The mysC+ genotype comprised 0.3-37.8% of the Microcystis population in Lake Erie during the study period. The proportion of the mysC+ genotype during high solar UV irradiation periods (mean = 18.8%) was significantly higher than that during lower UV periods (mean = 9.7%). Among the MAAs, shinorine (major) and porphyra (minor) were detected with HPLC-PDA-MS/MS from the Microcystis isolates and water samples. However, no significant difference in the MAA concentrations existed between higher and lower solar UV periods when the MAA concentrations were normalized with Microcystis mysC abundance. Collectively, this study's findings suggest that the MAA-producing Microcystis are present in Lake Erie, and they may be ecologically advantageous under high UV conditions, but not to the point that they exclusively predominate over the non-MAA-producers.
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Affiliation(s)
- Chenlin Hu
- Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, OH, USA
| | - Stuart A Ludsin
- Aquatic Ecology Laboratory, Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
| | - Jay F Martin
- Department of Food, Agricultural and Biological Engineering, and Ohio Sea Grant College Program, The Ohio State University, Columbus, OH, USA
| | - Elke Dittmann
- Department of Microbiology, University of Potsdam, Potsdam-Golm, Germany
| | - Jiyoung Lee
- Division of Environmental Health Sciences, College of Public Health, The Ohio State University, Columbus, OH, USA; Department of Food Science and Technology, The Ohio State University, Columbus, OH, USA.
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48
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Tanabe Y, Hodoki Y, Sano T, Tada K, Watanabe MM. Adaptation of the Freshwater Bloom-Forming Cyanobacterium Microcystis aeruginosa to Brackish Water Is Driven by Recent Horizontal Transfer of Sucrose Genes. Front Microbiol 2018; 9:1150. [PMID: 29922255 PMCID: PMC5996124 DOI: 10.3389/fmicb.2018.01150] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 05/14/2018] [Indexed: 12/13/2022] Open
Abstract
Microcystis aeruginosa is a bloom-forming cyanobacterium found in eutrophic water bodies worldwide. M. aeruginosa blooms usually occur in freshwater; however, they have also been reported to occur in brackish water. Because M. aeruginosa often produces the cyanotoxin microcystin, they are a major concern to public health and environment. Despite this, the ecology, genomic basis, and evolutionary process underlying the M. aeruginosa bloom invasion from fresh to brackish water have been poorly investigated. Hence, in the present study, we have sequenced and characterized genomes of two newly discovered salt-tolerant M. aeruginosa strains obtained from Japanese brackish water lakes (Lakes Shinji and Tofutsu). Both genomes contain a set of genes for the synthesis of osmolyte sucrose (sppA, spsA, and susA), hitherto identified in only one strain (PCC 7806) of M. aeruginosa. Chemical and gene expression analyses confirmed sucrose accumulation induced by salt. A comprehensive genetic survey of >200 strains indicated that sucrose genes are extremely rare in M. aeruginosa. Most surprisingly, comparative genome analyses of the three strains indicated extremely low genetic diversity in the sucrose genes compared with other core genome genes, suggesting very recent acquisitions via horizontal transfer. Invasion of M. aeruginosa blooms into brackish water may be a recent event triggered by anthropogenic eutrophication of brackish water.
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Affiliation(s)
- Yuuhiko Tanabe
- Algae Biomass and Energy System R&D Center, University of Tsukuba, Tsukuba, Japan
| | | | - Tomoharu Sano
- Center for Environmental Measurement and Analysis, National Institute for Environmental Studies, Tsukuba, Japan
| | - Kiyoshi Tada
- Algae Biomass and Energy System R&D Center, University of Tsukuba, Tsukuba, Japan
| | - Makoto M Watanabe
- Algae Biomass and Energy System R&D Center, University of Tsukuba, Tsukuba, Japan
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49
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Huo D, Chen Y, Zheng T, Liu X, Zhang X, Yu G, Qiao Z, Li R. Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation Sequencing. Front Microbiol 2018; 9:971. [PMID: 29867874 PMCID: PMC5962762 DOI: 10.3389/fmicb.2018.00971] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Accepted: 04/25/2018] [Indexed: 11/17/2022] Open
Abstract
Microcystis is one of the most common and dominant bloom-forming cyanobacteria in freshwater worldwide. The method for genotype detection based on traditional molecular cloning is expensive and time consuming and generates a limited number of sequences. In this study, a high-throughput sequencing (HTS) method was developed to detect the internal transcribed spacer (ITS) regions between 16S and 23S rRNA region of Microcystis populations along a typical water system in Yuqiao Reservoir-Haihe River in Tianjin, northern China. A total of 629,341 reads were obtained and clustered into 2005 operational taxonomic units (OTUs). Analysis of alpha diversity indices showed that the Haihe River is more diverse than Yuqiao Reservoir. In general, the two water areas exhibit a clear differentiation pattern in OTU abundance, sharing genotypes from a small part of Yuqiao Reservoir with those in the Haihe River. Phylogenetic analysis further indicated the possible flexible evolution of Microcystis genotypes occurring in the research areas. This study provides the first exhaustive description of HTS method for detection of ITS region to evaluate Microcystis intra-species diversity and relationship.
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Affiliation(s)
- Da Huo
- National Demonstration Center for Experimental Aqua-ecology and Aquaculture Education, Department of Fisheries Sciences, Tianjin Agricultural University, Tianjin, China
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Youxin Chen
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Tao Zheng
- National Demonstration Center for Experimental Aqua-ecology and Aquaculture Education, Department of Fisheries Sciences, Tianjin Agricultural University, Tianjin, China
| | - Xiang Liu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Xinyue Zhang
- National Demonstration Center for Experimental Aqua-ecology and Aquaculture Education, Department of Fisheries Sciences, Tianjin Agricultural University, Tianjin, China
| | - Gongliang Yu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Zhiyi Qiao
- National Demonstration Center for Experimental Aqua-ecology and Aquaculture Education, Department of Fisheries Sciences, Tianjin Agricultural University, Tianjin, China
| | - Renhui Li
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
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50
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Zhao L, Song Y, Li L, Gan N, Brand JJ, Song L. The highly heterogeneous methylated genomes and diverse restriction-modification systems of bloom-forming Microcystis. HARMFUL ALGAE 2018; 75:87-93. [PMID: 29778228 DOI: 10.1016/j.hal.2018.04.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Revised: 04/08/2018] [Accepted: 04/08/2018] [Indexed: 06/08/2023]
Abstract
The occurrence of harmful Microcystis blooms is increasing in frequency in a myriad of freshwater ecosystems. Despite considerable research pertaining to the cause and nature of these blooms, the molecular mechanisms behind the cosmopolitan distribution and phenotypic diversity in Microcystis are still unclear. We compared the patterns and extent of DNA methylation in three strains of Microcystis, PCC 7806SL, NIES-2549 and FACHB-1757, using Single Molecule Real-Time (SMRT) sequencing technology. Intact restriction-modification (R-M) systems were identified from the genomes of these strains, and from two previously sequenced strains of Microcystis, NIES-843 and TAIHU98. A large number of methylation motifs and R-M genes were identified in these strains, which differ substantially among different strains. Of the 35 motifs identified, eighteen had not previously been reported. Strain NIES-843 contains a larger number of total putative methyltransferase genes than have been reported previously from any bacterial genome. Genomic comparisons reveal that methyltransferases (some partial) may have been acquired from the environment through horizontal gene transfer.
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Affiliation(s)
- Liang Zhao
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yulong Song
- Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Lin Li
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, PR China
| | - Nanqin Gan
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, PR China
| | - Jerry J Brand
- The UTEX Culture Collection of Algae, University of Texas at Austin, Austin, TX, 78712, USA
| | - Lirong Song
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, PR China.
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