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Jeba JA, Devi SN. Efficient graph cut optimization using hybrid kernel functions for segmentation of FDG uptakes in fused PET/CT images. Appl Soft Comput 2019. [DOI: 10.1016/j.asoc.2019.105815] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Johnson PB, Young LA, Lamichhane N, Patel V, Chinea FM, Yang F. Quantitative imaging: Correlating image features with the segmentation accuracy of PET based tumor contours in the lung. Radiother Oncol 2017; 123:257-262. [PMID: 28433412 DOI: 10.1016/j.radonc.2017.03.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2016] [Revised: 03/02/2017] [Accepted: 03/12/2017] [Indexed: 10/19/2022]
Abstract
The purpose of this study was to investigate the correlation between image features extracted from PET images and the accuracy of manually drawn lesion contours in the lung. Such correlations are interesting in that they could potentially be used in predictive models to help guide physician contouring. In this work, 26 synthetic PET datasets were created using an anthropomorphic phantom and Monte Carlo simulation. Manual contours of simulated lesions were provided by 10 physicians. Contour accuracy was quantified using five commonly used similarity metrics which were then correlated with several features extracted from the images. Features were sub-divided into three groups using intensity, geometry, and texture as categorical descriptors. When averaged among the participants, the results showed relatively strong correlations with complexity and contrastI (r≥0.65, p<0.001), and moderate correlations with several other image features (r≥0.5, p<0.01). The predictive nature of these correlations was improved through stepwise regression and the creation of multi-feature models. Imaging features were also correlated with the standard deviation of contouring error in order to investigate inter-observer variability. Several features were consistently identified as influential including integral of mean curvature and complexity. These relationships further the understanding as to what causes variation in the contouring of PET positive lesions.
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Affiliation(s)
- Perry B Johnson
- Radiation Oncology/Biomedical Engineering, University of Miami, Miami, FL, USA
| | - Lori A Young
- Radiation Oncology, University of Washington, Seattle, WA, USA
| | | | - Vivek Patel
- Radiation Oncology, University of Miami, Miami, FL, USA
| | | | - Fei Yang
- Radiation Oncology, University of Miami, Miami, FL, USA.
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Ikushima K, Arimura H, Jin Z, Yabu-Uchi H, Kuwazuru J, Shioyama Y, Sasaki T, Honda H, Sasaki M. Computer-assisted framework for machine-learning-based delineation of GTV regions on datasets of planning CT and PET/CT images. JOURNAL OF RADIATION RESEARCH 2017; 58:123-134. [PMID: 27609193 PMCID: PMC5321188 DOI: 10.1093/jrr/rrw082] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Revised: 05/14/2016] [Accepted: 07/03/2016] [Indexed: 06/06/2023]
Abstract
We have proposed a computer-assisted framework for machine-learning-based delineation of gross tumor volumes (GTVs) following an optimum contour selection (OCS) method. The key idea of the proposed framework was to feed image features around GTV contours (determined based on the knowledge of radiation oncologists) into a machine-learning classifier during the training step, after which the classifier produces the 'degree of GTV' for each voxel in the testing step. Initial GTV regions were extracted using a support vector machine (SVM) that learned the image features inside and outside each tumor region (determined by radiation oncologists). The leave-one-out-by-patient test was employed for training and testing the steps of the proposed framework. The final GTV regions were determined using the OCS method that can be used to select a global optimum object contour based on multiple active delineations with a LSM around the GTV. The efficacy of the proposed framework was evaluated in 14 lung cancer cases [solid: 6, ground-glass opacity (GGO): 4, mixed GGO: 4] using the 3D Dice similarity coefficient (DSC), which denotes the degree of region similarity between the GTVs contoured by radiation oncologists and those determined using the proposed framework. The proposed framework achieved an average DSC of 0.777 for 14 cases, whereas the OCS-based framework produced an average DSC of 0.507. The average DSCs for GGO and mixed GGO were 0.763 and 0.701, respectively, obtained by the proposed framework. The proposed framework can be employed as a tool to assist radiation oncologists in delineating various GTV regions.
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Affiliation(s)
- Koujiro Ikushima
- Graduate School of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Hidetaka Arimura
- Faculty of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Ze Jin
- Graduate School of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
- Research Fellow of the Japan Society for the Promotion of Science
| | - Hidetake Yabu-Uchi
- Faculty of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Jumpei Kuwazuru
- Saiseikai Fukuoka General Hospital, 1-3-46, Tenjin, Chuo-ku, Fukuoka 810-0001, Japan
| | - Yoshiyuki Shioyama
- Saga Heavy Ion Medical Accelerator in Tosu, 415, Harakoga-cho, Tosu 841-0071, Japan
| | - Tomonari Sasaki
- Faculty of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Hiroshi Honda
- Faculty of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Masayuki Sasaki
- Faculty of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
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