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Abasi F, Raja NI, Mashwani ZUR, Ehsan M, Ali H, Shahbaz M. Heat and Wheat: Adaptation strategies with respect to heat shock proteins and antioxidant potential; an era of climate change. Int J Biol Macromol 2024; 256:128379. [PMID: 38000583 DOI: 10.1016/j.ijbiomac.2023.128379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/21/2023] [Accepted: 11/21/2023] [Indexed: 11/26/2023]
Abstract
Extreme changes in weather including heat-wave and high-temperature fluctuations are predicted to increase in intensity and duration due to climate change. Wheat being a major staple crop is under severe threat of heat stress especially during the grain-filling stage. Widespread food insecurity underscores the critical need to comprehend crop responses to forthcoming climatic shifts, pivotal for devising adaptive strategies ensuring sustainable crop productivity. This review addresses insights concerning antioxidant, physiological, molecular impacts, tolerance mechanisms, and nanotechnology-based strategies and how wheat copes with heat stress at the reproductive stage. In this study stress resilience strategies were documented for sustainable grain production under heat stress at reproductive stage. Additionally, the mechanisms of heat resilience including gene expression, nanomaterials that trigger transcription factors, (HSPs) during stress, and physiological and antioxidant traits were explored. The most reliable method to improve plant resilience to heat stress must include nano-biotechnology-based strategies, such as the adoption of nano-fertilizers in climate-smart practices and the use of advanced molecular approaches. Notably, the novel resistance genes through advanced molecular approach and nanomaterials exhibit promise for incorporation into wheat cultivars, conferring resilience against imminent adverse environmental conditions. This review will help scientific communities in thermo-tolerance wheat cultivars and new emerging strategies to mitigate the deleterious impact of heat stress.
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Affiliation(s)
- Fozia Abasi
- Department of Botany, PMAS-Arid Agriculture University, Rawalpindi 46300, Pakistan.
| | - Naveed Iqbal Raja
- Department of Botany, PMAS-Arid Agriculture University, Rawalpindi 46300, Pakistan.
| | | | - Maria Ehsan
- Department of Botany, PMAS-Arid Agriculture University, Rawalpindi 46300, Pakistan
| | - Habib Ali
- Department of Agronomy, PMAS-Arid Agriculture University, Rawalpindi 46300, Pakistan
| | - Muhammad Shahbaz
- Institute for Tropical Biology and Conservation (ITBC), Universiti Malaysia Sabah, 88400 Kota Kinabalu, Malaysia
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Kumawat G, Jakhar ML, Singh V, Singh J, Gothwal DK, Yadava DK. High throughput phenotyping of functional traits and key indices for selection of salt tolerant Mustard [Brassica juncea (L.) Czern & Coss] genotypes. PHYSIOLOGIA PLANTARUM 2024; 176:e14178. [PMID: 38342492 DOI: 10.1111/ppl.14178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 12/15/2023] [Accepted: 12/19/2023] [Indexed: 02/13/2024]
Abstract
The current scanty knowledge about the salt tolerance mechanism underlying the ability of plants to tolerate salt stress hinders the potential production of numerous crops, including Indian mustard. To explore the traits and mechanism for salt tolerance, high throughput phenotyping of 250 stabilized F7:8 recombinant inbred lines (RILs) mapping population of Indian mustard were conducted under control and salinity (ECiw 12 dS m-1 ) for 54 morpho-physio-seed-quality traits. Most of the traits were reduced with variable percentages under salt stress. The stress tolerance index (STI) of YPP showed a significant negative association with Na+ concentration of root (RNa), indicating that RILs with low Na+ concentration have high seed yield and a positive significant association with STI of yield-related traits, photosynthesis rate (Pn), intrinsic water use efficiency (inWUE), fresh weight of upper leaf (USFW), fresh weight of branches (BrFW), fresh weight of basal leaf (BLFW), and fresh weight of middle leaf (MLFW) revealed that by improving these traits seed yield per plant (YPP) was improved. Based on principal component analysis (PCA) of 54 STI and new index composite selection index (CSI), RILs viz., R114, R150, R164, R170, and R206 were identified as stable performers which can be exploited for quantitative trait loci (QTLs)/gene discovery and serve as potential donors to combat salt stress. Our research will serve to determine the relative importance of different functional traits of salt tolerance mechanisms that can be used to screen colossal germplasm.
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Affiliation(s)
- Gayatri Kumawat
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, Haryana, India
- Department of Plant Breeding and Genetics, Sri Karan Narendra Agriculture University, Rajasthan, India
- Livestock Feed Resource Management and Technology Centre, Rajasthan University of Veterinary and Animal Sciences, Bikaner, India
| | - Mohan Lal Jakhar
- Department of Plant Breeding and Genetics, Sri Karan Narendra Agriculture University, Rajasthan, India
| | - Vijayata Singh
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, Haryana, India
| | - Jogendra Singh
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, Haryana, India
| | - Dinesh Kumar Gothwal
- Department of Plant Breeding and Genetics, Sri Karan Narendra Agriculture University, Rajasthan, India
| | - Devendra Kumar Yadava
- Division of Crop Science, Indian Council of Agricultural Research (ICAR), New Delhi, India
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Deivanai S, Sng BJR, Van Vu K, Shibu TSM, Jang IC, Ramachandran S. EMS-induced mutagenesis in Choy sum (Brassica chinensis var. parachinensis) and selection for low light tolerance using abiotic stress indices. BMC PLANT BIOLOGY 2023; 23:581. [PMID: 37985970 PMCID: PMC10662144 DOI: 10.1186/s12870-023-04570-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 10/28/2023] [Indexed: 11/22/2023]
Abstract
BACKGROUND Choy Sum (Brassica rapa ssp. chinensis var. parachinensis), grown in a controlled environment, is vulnerable to changes in indoor light quality and displays distinct photo-morphogenesis responses. The scarcity of Choy Sum germplasm for indoor cultivation necessitates the development of new cultivars. Hence, this study attempted to develop mutants through chemical mutagenesis and select low-light-tolerant mutants by using abiotic stress tolerance indices. RESULTS A mutant population of Choy Sum created using 1.5% ethyl methane sulfonate (EMS) at 4 h was manually pollinated to obtain the M2 generation. 154 mutants with reduced hypocotyl length were initially isolated from 3600 M2 seedlings screened under low light (R: FR = 0.5). Five mutants that showed reduced plant height at mature stages were selected and screened directly for shade tolerance in the M3 generation. Principal component analysis based on phenotypic data distinguished the M3 mutants from the wild type. Abiotic stress tolerance indices such as relative stress index (RSI), stress tolerance index (STI), geometric mean productivity (GMP), yield stability index (YSI), and stress resistance index (SRI) showed significant (P < 0.05), and positive associations with leaf yield under shade. M3-12-2 was selected as a shade-tolerant mutant based on high values of STI, YSI, and SRI with low values for tolerance (TOL) and stress susceptibility index (SSI). CONCLUSIONS The results demonstrate that mutation breeding can be used to create dominant mutants in Choy Sum. Furthermore, we show that screening for low light and selection based on abiotic tolerance indices allowed the identification of mutants with high resilience under shade. This method should apply to developing new cultivars in other crop plants that can be suitable for controlled environments with stable yield performance.
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Affiliation(s)
- Subramanian Deivanai
- School of Applied Sciences, Republic Polytechnic, 9 Woodlands Ave 9, Singapore, 738964 , Singapore.
| | - Benny Jian Rong Sng
- Temasek Life Sciences Laboratory Limited, Research Link, National University Singapore, Buona Vista, Singapore, 117604, Singapore
| | - Kien Van Vu
- Temasek Life Sciences Laboratory Limited, Research Link, National University Singapore, Buona Vista, Singapore, 117604, Singapore
| | - Thankaraj Salammal Maria Shibu
- Temasek Life Sciences Laboratory Limited, Research Link, National University Singapore, Buona Vista, Singapore, 117604, Singapore
| | - In-Cheol Jang
- Temasek Life Sciences Laboratory Limited, Research Link, National University Singapore, Buona Vista, Singapore, 117604, Singapore
| | - Srinivasan Ramachandran
- Temasek Life Sciences Laboratory Limited, Research Link, National University Singapore, Buona Vista, Singapore, 117604, Singapore.
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Wang J, Hua G, Chen J, Cui K, Yang Z, Han D, Yang X, Dong X, Ma Y, Cai G, Zhang Y, Li J, Tai Y, Da L, Li X, Ma L, Ma Q, Li R, Liu J, Darwish HYA, Wu K, Rong W, Liu W, Zhao Y, Deng X. Epigenetic mechanism of Gtl2-miRNAs causes the primitive sheep characteristics found in purebred Merino sheep. Cell Biosci 2023; 13:190. [PMID: 37828606 PMCID: PMC10571318 DOI: 10.1186/s13578-023-01142-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Accepted: 10/05/2023] [Indexed: 10/14/2023] Open
Abstract
BACKGROUND It is not uncommon for some individuals to retain certain primitive characteristics even after domestication or long-term intensive selection. Wild ancestors or original varieties of animals typically possess strong adaptability to environmental preservation, a trait that is often lacking in highly artificially selected populations. In the case of the Merino population, a world-renowned fine wool sheep breed, a phenotype with primitive coarse wool characteristic has re-emerged. It is currently unclear whether this characteristic is detrimental to the production of fine wool or whether it is linked to the adaptability of sheep. The underlying genetic/epigenetic mechanisms behind this trait are also poorly understood. RESULTS This study identified lambs with an ancestral-like coarse (ALC) wool type that emerged during the purebred breeding of Merino fine wool sheep. The presence of this primitive sheep characteristic resulted in better environmental adaptability in lambs, as well as improved fine wool yield in adulthood. Reciprocal cross experiments revealed that the ALC phenotype exhibited maternal genetic characteristics. Transcriptomic SNP analysis indicated that the ALC phenotype was localized to the imprinted Gtl2-miRNAs locus, and a significant correlation was found between the ALC wool type and a newly identified short Interstitial Telomeric Sequences (s-ITSs) at this locus. We further confirmed that a novel 38-nt small RNA transcribed from these s-ITSs, in combination with the previously reported 22-nt small RNAs cluster from the Gtl2-miRNAs locus, synergistically inhibited PI3K/AKT/Metabolic/Oxidative stress and subsequent apoptotic pathways in wool follicle stem cells, resulting in the ALC wool type. The necessity of Gtl2-miRNAs in controlling primary hair follicle morphogenesis, as well as the wool follicle type for ALC wool lambs, was verified using intergenic differentially methylated region-knockout mice. CONCLUSION The ALC wool type of Merino sheep, which does not reduce wool quality but increases yield and adaptability, is regulated by epigenetic mechanisms in the imprinted Gtl2-miRNAs region on sheep chromosome 18, with the maternally expressed imprinted gene responsible for the ALC phenotype. This study highlights the significance of epigenetic regulation during embryonic and juvenile stages and emphasizes the advantages of early adaptation breeding for maternal parents in enhancing the overall performance of their offspring.
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Affiliation(s)
- Jiankui Wang
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Guoying Hua
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Jianfei Chen
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Kai Cui
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
- Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100086, China
| | - Zu Yang
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Deping Han
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Xue Yang
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Xianggui Dong
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Yuhao Ma
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Ganxian Cai
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Yuanyuan Zhang
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Jinnan Li
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Yurong Tai
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Lai Da
- Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Huhhot, 010031, China
| | - Xinhai Li
- College of Agriculture, Ningxia University, Yinchuan, 750021, China
| | - Lina Ma
- Institute of Animal Science, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, 750002, China
| | - Qing Ma
- Institute of Animal Science, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, 750002, China
| | - Rui Li
- Jinfeng Animal Husbandry Group Co., Ltd., Chifeng, 024000, China
| | - Jianbin Liu
- Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China
| | - Hesham Y A Darwish
- Department of Applied Biotechnology, Molecular Biology Researches & Studies Institute, Assiut University, Assiut, 71526, Egypt
| | - Keliang Wu
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Weiheng Rong
- Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Huhhot, 010031, China
| | - Wansheng Liu
- Department of Animal Science, Center for Reproductive Biology and Health, College of Agricultural Sciences, Pennsylvania State University, University Park, PA, 16802, USA
| | - Yaofeng Zhao
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China
| | - Xuemei Deng
- Beijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China.
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Screening of rice drought-tolerant lines by introducing a new composite selection index and competitive with multivariate methods. Sci Rep 2022; 12:2163. [PMID: 35140275 PMCID: PMC8828889 DOI: 10.1038/s41598-022-06123-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 01/24/2022] [Indexed: 02/01/2023] Open
Abstract
Selection and breeding for drought tolerance in rice have always been one of the leading objectives for rice breeders in water-deficient farming areas. In the present study, we applied the potential of recombinant inbred lines (RILs) population, which were derived from cross Shahpasand (Iranian landrace) and IR28, for the development of drought-tolerant rice lines. One hundred fifty-two lines along with five check varieties were investigated from 2017 to 2019 under non-stress and drought stress conditions. The yield reduction caused by drought based on overall mean during 2017, 2018, and 2019 were estimated to be 89.40, 57.95, and 35.31%, respectively. Using different statistical methods, certain lines, including L33, L90, and L109, which are considered as the best lines in most environments, were found to be promising for being utilized to increase rice drought tolerance. The averages of grain yield of the above-mentioned lines were respectively 6.45, 5.80, and 5.70 t ha−1 under non-stress condition, and respectively 2.77, 2.66, and 2.59 t ha−1 under drought stress condition. The yield reduction of the selected lines were significantly lower than that of others indicating the significant transgressive segregation. The results revealed using the combination of the best identified tolerance and susceptibility indices and GT-biplot are effective methods for screening superior lines. However, their utilization is not easy and requires specialized packages. For the first time, we introduced a new composite index as a combination of significant indices (CSI). CSI is in the form of a linear function of indices which effectiveness is determined by their correlation coefficient with grain yield. According to our results, using CSI, the identified rice drought-tolerant lines were in high agreement with those obtained by other methods, demonstrating that CSI is a simple but reliable composite index.
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Ramtekey V, Bansal R, Aski MS, Kothari D, Singh A, Pandey R, Tripathi K, Mishra GP, Kumar S, Dikshit HK. Genetic Variation for Traits Related to Phosphorus Use Efficiency in Lens Species at the Seedling Stage. PLANTS (BASEL, SWITZERLAND) 2021; 10:2711. [PMID: 34961182 PMCID: PMC8707046 DOI: 10.3390/plants10122711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Revised: 11/22/2021] [Accepted: 11/22/2021] [Indexed: 06/14/2023]
Abstract
Phosphorus (P) is an essential, non-renewable resource critical for crop productivity across the world. P is immobile in nature and, therefore, the identification of novel genotypes with efficient P uptake and utilization under a low P environment is extremely important. This study was designed to characterize eighty genotypes of different Lens species for shoot and root traits at two contrasting levels of P. A significant reduction in primary root length (PRL), total surface area (TSA), total root tips (TRT), root forks (RF), total dry weight (TDW), root dry weight (RDW) and shoot dry weight (SDW) in response to P deficiency was recorded. A principal component analysis revealed that the TDW, SDW and RDW were significantly correlated to P uptake and utilization efficiency in lentils. Based on total dry weight (TDW) under low P, L4727, EC718309, EC714238, PL-97, EC718348, DPL15, PL06 and EC718332 were found promising. The characterization of different Lens species revealed species-specific variations for the studied traits. Cultivated lentils exhibited higher P uptake and utilization efficiency as compared to the wild forms. The study, based on four different techniques, identified EC714238 as the most P use-efficient genotype. The genotypes identified in this study can be utilized for developing mapping populations and deciphering the genetics for breeding lentil varieties suited for low P environments.
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Affiliation(s)
- Vinita Ramtekey
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (V.R.); (M.S.A.); (D.K.)
- Department of Genetics and Plant Breeding, ICAR—Indian Institute of Seed Science, Mau 275103, India
| | - Ruchi Bansal
- Division of Germplasm Evaluation, ICAR—National Bureau of Plant Genetic Resources, New Delhi 110012, India; (R.B.); (K.T.)
| | - Muraleedhar S. Aski
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (V.R.); (M.S.A.); (D.K.)
| | - Deepali Kothari
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (V.R.); (M.S.A.); (D.K.)
| | - Akanksha Singh
- Amity Institute of Organic Agriculture, Amity University, Noida 201303, India;
| | - Renu Pandey
- Division of Plant Physiology, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India;
| | - Kuldeep Tripathi
- Division of Germplasm Evaluation, ICAR—National Bureau of Plant Genetic Resources, New Delhi 110012, India; (R.B.); (K.T.)
| | - Gyan P. Mishra
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (V.R.); (M.S.A.); (D.K.)
| | - Shiv Kumar
- Rabat-Institutes, ICARDA, B.P. 6299, Station Experiment, INRA-Quich, Rue Hafiane Cherkaoui Agdal, Rabat 10112, Morocco
| | - Harsh Kumar Dikshit
- Division of Genetics, ICAR—Indian Agricultural Research Institute, New Delhi 110012, India; (V.R.); (M.S.A.); (D.K.)
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Reddy VRP, Dikshit HK, Mishra GP, Aski M, Singh A, Bansal R, Pandey R, Nair RM. Comparison of different selection traits for identification of phosphorus use efficient lines in mungbean. PeerJ 2021; 9:e12156. [PMID: 34707926 PMCID: PMC8504459 DOI: 10.7717/peerj.12156] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 08/24/2021] [Indexed: 11/28/2022] Open
Abstract
Phosphorus (P) is one of the major constraints for crop growth and development, owing to low availability and least mobility in many tropical soil conditions. Categorization of existing germplasm under P deficient conditions is a prerequisite for the selection and development of P efficient genotypes in the mungbean. In the present investigation, 36 diverse genotypes were categorized for phosphorus use efficiency traits using four different techniques for identification of phosphorus use efficient mungbean genotypes. The studied genotypes were categorized for P efficiency based on efficiency, responsiveness, and stress tolerance score of genotypes under normal and low P conditions. The mean values of traits, root dry mass, root to shoot ratio, and P utilization efficiency are significantly higher under low P conditions indicating the high responsiveness of traits to P deficiency. The presence of significant interaction between genotypes and P treatment indicates the evaluated genotypes were significantly affected by P treatment for studied traits. The total P uptake showed significant and positive correlations with root dry mass, shoot dry mass, total dry mass,and P concentration under both P regimes. Out of the four techniques used for the categorization of genotypes for P efficiency, three techniques revealed that the genotype PUSA 1333, followed by Pusa Vishal, PUSA 1031, and Pusa Ratna is efficient. The categorization based on stress tolerance score is the finest way to study variation and for the selection of contrasting genotypes for P efficiency. The identified P efficient genotypes would be valuable resources for genetic enhancement of P use efficiency in mungbean breeding.
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Affiliation(s)
- Venkata Ravi Prakash Reddy
- Division of Genetics, ICAR- Indian Agricultural Research Institute, New Delhi, India.,Acharya N.G. Ranga Agricultural University Regional Agricultural Research Station, Nandyal, India
| | - Harsh Kumar Dikshit
- Division of Genetics, ICAR- Indian Agricultural Research Institute, New Delhi, India
| | - Gyan Prakash Mishra
- Division of Genetics, ICAR- Indian Agricultural Research Institute, New Delhi, India
| | - Muraleedhar Aski
- Division of Genetics, ICAR- Indian Agricultural Research Institute, New Delhi, India
| | - Akanksha Singh
- Division of Genetics, ICAR- Indian Agricultural Research Institute, New Delhi, India.,Amity Institute of Organic Agriculture, Amity University, Noida, Uttar Pradesh, India
| | - Ruchi Bansal
- Division of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India
| | - Renu Pandey
- Division of Plant Physiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
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Omics and CRISPR-Cas9 Approaches for Molecular Insight, Functional Gene Analysis, and Stress Tolerance Development in Crops. Int J Mol Sci 2021; 22:ijms22031292. [PMID: 33525517 PMCID: PMC7866018 DOI: 10.3390/ijms22031292] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 01/19/2021] [Accepted: 01/26/2021] [Indexed: 12/28/2022] Open
Abstract
Plants are regularly exposed to biotic and abiotic stresses that adversely affect agricultural production. Omics has gained momentum in the last two decades, fueled by statistical methodologies, computational capabilities, mass spectrometry, nucleic-acid sequencing, and peptide-sequencing platforms. Functional genomics—especially metabolomics, transcriptomics, and proteomics—have contributed substantially to plant molecular responses to stress. Recent progress in reverse and forward genetics approaches have mediated high-throughput techniques for identifying stress-related genes. Furthermore, web-based genetic databases have mediated bioinformatics techniques for detecting families of stress-tolerant genes. Gene ontology (GO) databases provide information on the gene product’s functional features and help with the computational estimation of gene function. Functional omics data from multiple platforms are useful for positional cloning. Stress-tolerant plants have been engineered using stress response genes, regulatory networks, and pathways. The genome-editing tool, CRISPR-Cas9, reveals the functional features of several parts of the plant genome. Current developments in CRISPR, such as de novo meristem induction genome-engineering in dicots and temperature-tolerant LbCas12a/CRISPR, enable greater DNA insertion precision. This review discusses functional omics for molecular insight and CRISPR-Cas9-based validation of gene function in crop plants. Omics and CRISPR-Cas9 are expected to garner knowledge on molecular systems and gene function and stress-tolerant crop production.
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Chávez‐Dulanto PN, Thiry AAA, Glorio‐Paulet P, Vögler O, Carvalho FP. Increasing the impact of science and technology to provide more people with healthier and safer food. Food Energy Secur 2020. [DOI: 10.1002/fes3.259] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Affiliation(s)
- Perla N. Chávez‐Dulanto
- Department of Plant Sciences Faculty of Agronomy Universidad Nacional Agraria La Molina Lima Peru
| | - Arnauld A. A. Thiry
- The Lancaster Environment Centre Lancaster University Bailrigg Lancaster United Kingdom
| | - Patricia Glorio‐Paulet
- Department of Food Engineering Faculty of Food Industry Universidad Nacional Agraria La Molina Lima Peru
| | - Oliver Vögler
- Group of Clinical and Translational Research Research Institute of Health Sciences (IUNICS‐IdISBa) Department of Biology University of the Balearic Islands Palma de Mallorca Spain
| | - Fernando P. Carvalho
- Laboratório de Protecção e Segurança Radiológica Instituto Superior Técnico—Universidade de Lisboa Lisboa Portugal
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Griffiths CA, Reynolds MP, Paul MJ. Combining yield potential and drought resilience in a spring wheat diversity panel. Food Energy Secur 2020; 9:e241. [PMID: 33391733 PMCID: PMC7771037 DOI: 10.1002/fes3.241] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 07/22/2020] [Indexed: 12/23/2022] Open
Abstract
Pressures of population growth and climate change require the development of resilient higher yielding crops, particularly to drought. A spring wheat diversity panel was developed to combine high-yield potential with resilience. To assess performance under drought, which in many environments is intermittent and dependent on plant development, 150 lines were grown with drought imposed for 10 days either at jointing or at anthesis stages in Obregon, Mexico. Both drought treatments strongly reduced grain numbers compared with the fully irrigated check. Best performers under drought at jointing had more grain than poor performers, while best performers under drought at anthesis had larger grain than poor performers. Most high-yielding lines were high yielding in one drought environment only. However, some of the best-performing lines displayed yield potential and resilience across two environments (28 lines), particularly for yield under well-watered and drought at jointing, where yield was most related to grain numbers. Strikingly, only three lines were high yielding across all three environments, and interestingly, these lines had high grain numbers. Among parameters measured in leaves and grain, leaf relative water content did not correlate with yield, and proline was negatively correlated with yield; there were small but significant relationships between leaf sugars and yield. This study provides a valuable resource for further crosses and for elucidating genes and mechanisms that may contribute to grain number and grain filling conservation to combine yield potential and drought resilience.
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Li Z, Tirado SB, Kadam DC, Coffey L, Miller ND, Spalding EP, Lorenz AJ, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Characterizing introgression-by-environment interactions using maize near isogenic lines. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:2761-2773. [PMID: 32572549 DOI: 10.1007/s00122-020-03630-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Accepted: 06/02/2020] [Indexed: 06/11/2023]
Abstract
Significant introgression-by-environment interactions are observed for traits throughout development from small introgressed segments of the genome. Relatively small genomic introgressions containing quantitative trait loci can have significant impacts on the phenotype of an individual plant. However, the magnitude of phenotypic effects for the same introgression can vary quite substantially in different environments due to introgression-by-environment interactions. To study potential patterns of introgression-by-environment interactions, fifteen near-isogenic lines (NILs) with > 90% B73 genetic background and multiple Mo17 introgressions were grown in 16 different environments. These environments included five geographical locations with multiple planting dates and multiple planting densities. The phenotypic impact of the introgressions was evaluated for up to 26 traits that span different growth stages in each environment to assess introgression-by-environment interactions. Results from this study showed that small portions of the genome can drive significant genotype-by-environment interaction across a wide range of vegetative and reproductive traits, and the magnitude of the introgression-by-environment interaction varies across traits. Some introgressed segments were more prone to introgression-by-environment interaction than others when evaluating the interaction on a whole plant basis throughout developmental time, indicating variation in phenotypic plasticity throughout the genome. Understanding the profile of introgression-by-environment interaction in NILs is useful in consideration of how small introgressions of QTL or transgene containing regions might be expected to impact traits in diverse environments.
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Affiliation(s)
- Zhi Li
- Department of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA
| | - Sara B Tirado
- Department of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA
- Department of Plant and Microbial Biology, University of Minnesota, 1479 Gortner Avenue, Saint Paul, MN, 55108, USA
| | - Dnyaneshwar C Kadam
- Department of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA
| | - Lisa Coffey
- Department of Agronomy, Iowa State University, 1111 WOI Rd, Ames, IA, 50011, USA
| | - Nathan D Miller
- Department of Botany, University of Wisconsin, 430 Lincoln Drive, Madison, WI, 53706, USA
| | - Edgar P Spalding
- Department of Botany, University of Wisconsin, 430 Lincoln Drive, Madison, WI, 53706, USA
| | - Aaron J Lorenz
- Department of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA
| | - Natalia de Leon
- Department of Agronomy, University of Wisconsin, 1575 Linden Drive, Madison, WI, 53706, USA
| | - Shawn M Kaeppler
- Department of Agronomy, University of Wisconsin, 1575 Linden Drive, Madison, WI, 53706, USA
| | - Patrick S Schnable
- Department of Agronomy, Iowa State University, 1111 WOI Rd, Ames, IA, 50011, USA
| | - Nathan M Springer
- Department of Plant and Microbial Biology, University of Minnesota, 1479 Gortner Avenue, Saint Paul, MN, 55108, USA
| | - Candice N Hirsch
- Department of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA.
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Guerrero-Zurita F, Ramírez DA, Rinza J, Ninanya J, Blas R, Heider B. Potential Short-Term Memory Induction as a Promising Method for Increasing Drought Tolerance in Sweetpotato Crop Wild Relatives [ Ipomoea series Batatas (Choisy) D. F. Austin]. FRONTIERS IN PLANT SCIENCE 2020; 11:567507. [PMID: 33013990 PMCID: PMC7494806 DOI: 10.3389/fpls.2020.567507] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 08/12/2020] [Indexed: 06/11/2023]
Abstract
Crop wild relatives of sweetpotato [Ipomoea series Batatas (Choisy) D. F. Austin] are a group of species with potential for use in crop improvement programs seeking to breed for drought tolerance. Stress memory in this group could enhance these species' physiological response to drought, though no studies have yet been conducted in this area. In this pot experiment, drought tolerance, determined using secondary traits, was tested in 59 sweetpotato crop wild relative accessions using potential short-term memory induction. For this purpose, accessions were subjected to two treatments, i) non-priming: full irrigation (up to field capacity, 0.32 w/w) from transplanting to harvest and ii) priming: full irrigation from transplanting to flowering onset (FO) followed by a priming process from FO to harvest. The priming process consisted of three water restriction periods of increasing length (8, 11, and 14 days) followed each by a recovery period of 14 days with full irrigation. Potential stress memory induction was calculated for each accession based on ecophysiological indicators such as senescence, foliar area, leaf-minus-air temperature, and leaf 13C discrimination. Based on total biomass production, resilience and production capacity were calculated per accession to evaluate drought tolerance. Increase in foliar area, efficient leaf thermoregulation, improvement of leaf photosynthetic performance, and delayed senescence were identified in 23.7, 28.8, 50.8, and 81.4% of the total number of accessions, respectively. It was observed that under a severe drought scenario, a resilient response included more long-lived green leaf area while a productive response was related to optimized leaf thermoregulation and gas exchange. Our preliminary results suggest that I. triloba and I. trifida have the potential to improve sweetpotato resilience in dry environments and should be included in introgression breeding programs of this crop. Furthermore, I. splendor-sylvae, I. ramosissima, I. tiliacea, and wild I. batatas were the most productive species studied but given the genetic barriers to interspecific hybridization between these species and sweetpotato, we suggest that further genetic and metabolic studies be conducted on them. Finally, this study proposes a promising method for improving drought tolerance based on potential stress-memory induction, which is applicable both for wild species and crops.
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Affiliation(s)
| | - David A. Ramírez
- Latin American & Caribbean Regional Program, International Potato Center, Lima, Peru
| | - Javier Rinza
- Crop and Systems Science Division, International Potato Center, Lima, Peru
| | - Johan Ninanya
- Crop and Systems Science Division, International Potato Center, Lima, Peru
| | - Raúl Blas
- Crop Husbandry Department, Universidad Nacional Agraria La Molina, Lima, Peru
| | - Bettina Heider
- Genetics, Genomics and Crop Improvement Division, International Potato Center, Lima, Peru
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Ali Q, Perveen R, El-Esawi MA, Ali S, Hussain SM, Amber M, Iqbal N, Rizwan M, Alyemeni MN, El-Serehy HA, Al-Misned FA, Ahmad P. Low Doses of Cuscuta reflexa Extract Act as Natural Biostimulants to Improve the Germination Vigor, Growth, and Grain Yield of Wheat Grown under Water Stress: Photosynthetic Pigments, Antioxidative Defense Mechanisms, and Nutrient Acquisition. Biomolecules 2020; 10:E1212. [PMID: 32825369 PMCID: PMC7565113 DOI: 10.3390/biom10091212] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 08/14/2020] [Accepted: 08/17/2020] [Indexed: 12/12/2022] Open
Abstract
The present study was conducted to investigate the effects of Cuscuta reflexa extract (CRE) on the activities of germination enzymes, seed germination vigor, biomass production, physio-biochemical attributes, and seed yield of water-stressed wheat plants. Different levels of CRE (0, 10, 20, 30, 40, and 50%), including water soaking, were used as seed priming. Water stress negatively affected the seed germination, germination enzyme activities, growth, yield, and different physio-biochemical attributes of wheat plants. Low doses of CRE (10, 20, and 30%) ameliorated the adverse effects of water stress on seed germination attributes, and activities of germination enzymes, but negative impacts were recorded at higher doses (40 and 50%) of CRE. Water-stressed wheat plants grown from seeds pre-treated with low doses of CRE also showed better growth and yield as compared with non-treated ones, and that was associated with an improvement in water relations, photosynthetic pigments, nutrient acquisition, reduced lipid peroxidation, and better antioxidative defense mechanisms. The maximum increase in seed yield was 14.77 and 12.32%, found in plants grown from seeds treated with 20% and 10% CRE, respectively. In conclusion, it is suggested that using low doses of CRE as seed priming can contribute to better wheat yield under water stress, especially in semi-arid and arid areas.
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Affiliation(s)
- Qasim Ali
- Department of Botany, Government College University Faisalabad, Faisalabad 38000, Pakistan; (M.A.); (N.I.)
| | - Rashida Perveen
- Department of Physics, University of Agriculture Faisalabad, Faisalabad 38000, Pakistan;
| | - Mohamed A. El-Esawi
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt;
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, Faisalabad 38000, Pakistan;
- Department of Biological Sciences and Technology, China Medical University, Taichung 40402, Taiwan
| | - Syed Makhdoom Hussain
- Department of Zoology, Government College University Faisalabad, Faisalabad 38000, Pakistan;
| | - Maira Amber
- Department of Botany, Government College University Faisalabad, Faisalabad 38000, Pakistan; (M.A.); (N.I.)
| | - Naeem Iqbal
- Department of Botany, Government College University Faisalabad, Faisalabad 38000, Pakistan; (M.A.); (N.I.)
| | - Muhammad Rizwan
- Department of Environmental Sciences and Engineering, Government College University, Allama Iqbal Road, Faisalabad 38000, Pakistan;
| | - Mohammed Nasser Alyemeni
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh l1451, Saudi Arabia; (M.N.A.); (P.A.)
| | - Hamed A. El-Serehy
- Department of Zoology, College of Science, King Saud University, Riyadh l1451, Saudi Arabia; (H.A.E.-S.); (F.A.A.-M.)
| | - Fahad A. Al-Misned
- Department of Zoology, College of Science, King Saud University, Riyadh l1451, Saudi Arabia; (H.A.E.-S.); (F.A.A.-M.)
| | - Parvaiz Ahmad
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh l1451, Saudi Arabia; (M.N.A.); (P.A.)
- Department of Botany, S.P. College, Maulana Azad Road, Srinagar, Jammu and Kashmir, Pune 190001, India
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Trichoderma parareesei Favors the Tolerance of Rapeseed (Brassica napus L.) to Salinity and Drought Due to a Chorismate Mutase. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10010118] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Both drought and salinity represent the greatest plant abiotic stresses in crops. Increasing plant tolerance against these environmental conditions must be a key strategy in the development of future agriculture. The genus of Trichoderma filament fungi includes several species widely used as biocontrol agents for plant diseases but also some with the ability to increase plant tolerance against abiotic stresses. In this sense, using the species T. parareesei and T. harzianum, we have verified the differences between the two after their application in rapeseed (Brassica napus) root inoculation, with T. parareesei being a more efficient alternative to increase rapeseed productivity under drought or salinity conditions. In addition, we have determined the role that T. parareesei chorismate mutase plays in its ability to promote tolerance to salinity and drought in plants by increasing the expression of genes related to the hormonal pathways of abscisic acid (ABA) under drought stress, and ethylene (ET) under salt stress.
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15
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Haas M, Sprenger H, Zuther E, Peters R, Seddig S, Walther D, Kopka J, Hincha DK, Köhl KI. Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? FRONTIERS IN PLANT SCIENCE 2020; 11:1071. [PMID: 32793257 PMCID: PMC7385397 DOI: 10.3389/fpls.2020.01071] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 06/30/2020] [Indexed: 05/09/2023]
Abstract
Climate models predict an increased likelihood of drought, demanding efficient selection for drought tolerance to maintain yield stability. Classic tolerance breeding relies on selection for yield in arid environments, which depends on yield trials and takes decades. Breeding could be accelerated by marker-assisted selection (MAS). As an alternative to genomic markers, transcript and metabolite markers have been suggested for important crops but also for orphan corps. For potato, we suggested a random-forest-based model that predicts tolerance from leaf metabolite and transcript levels with a precision of more than 90% independent of the agro-environment. To find out how the model based selection compares to yield-based selection in arid environments, we applied this approach to a population of 200 tetraploid Solanum tuberosum ssp. tuberosum lines segregating for drought tolerance. Twenty-four lines were selected into a phenotypic subpopulation (PPt) for superior tolerance based on relative tuber starch yield data from three drought stress trials. Two subpopulations with superior (MPt) and inferior (MPs) tolerance were selected based on drought tolerance predictions based on leaf metabolite and transcript levels from two sites. The 60 selected lines were phenotyped for yield and drought tolerance in 10 multi-environment drought stress trials representing typical Central European drought scenarios. Neither selection affected development or yield potential. Lines with superior drought tolerance and high yields under stress were over-represented in both populations selected for superior tolerance, with a higher number in PPt compared to MPt. However, selection based on leaf metabolites may still be an alternative to yield-based selection in arid environments as it works on leaves sampled in breeder's fields independent of drought trials. As the selection against low tolerance was ineffective, the method is best used in combination with tools that select against sensitive genotypes. Thus, metabolic and transcript marker-based selection for drought tolerance is a viable alternative to the selection on yield in arid environments.
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Affiliation(s)
- Manuela Haas
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Heike Sprenger
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Ellen Zuther
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Rolf Peters
- Versuchsstation Dethlingen, Landwirtschaftskammer Niedersachsen, Munster, Germany
| | - Sylvia Seddig
- Federal Research Centre for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Julius-Kühn Institut, Sanitz, Germany
| | - Dirk Walther
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Joachim Kopka
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Dirk K. Hincha
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Karin I. Köhl
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- *Correspondence: Karin I. Köhl,
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16
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Transcriptome analysis and codominant markers development in caper, a drought tolerant orphan crop with medicinal value. Sci Rep 2019; 9:10411. [PMID: 31320697 PMCID: PMC6639398 DOI: 10.1038/s41598-019-46613-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 06/27/2019] [Indexed: 01/08/2023] Open
Abstract
Caper (Capparis spinosa L.) is a xerophytic shrub cultivated for its flower buds and fruits, used as food and for their medicinal properties. Breeding programs and even proper taxonomic classification of the genus Capparis has been hampered so far by the lack of reliable genetic information and molecular markers. Here, we present the first genomic resource for C. spinosa, generated by transcriptomic approach and de novo assembly. The sequencing effort produced nearly 80 million clean reads assembled into 124,723 unitranscripts. Careful annotation and comparison with public databases revealed homologs to genes with a key role in important metabolic pathways linked to abiotic stress tolerance and bio-compounds production, such purine, thiamine and phenylpropanoid biosynthesis, α-linolenic acid and lipid metabolism. Additionally, a panel of genes involved in stomatal development/distribution and encoding for Stress Associated Proteins (SAPs) was also identified. We also used the transcriptomic data to uncover novel molecular markers for caper. Out of 50 SSRs tested, 14 proved polymorphic and represent the first set of SSR markers for the genus Capparis. This transcriptome will be an important contribution to future studies and breeding programs for this orphan crop, aiding to the development of improved varieties to sustain agriculture in arid conditions.
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Dodig D, Božinović S, Nikolić A, Zorić M, Vančetović J, Ignjatović-Micić D, Delić N, Weigelt-Fischer K, Junker A, Altmann T. Image-Derived Traits Related to Mid-Season Growth Performance of Maize Under Nitrogen and Water Stress. FRONTIERS IN PLANT SCIENCE 2019; 10:814. [PMID: 31297124 PMCID: PMC6607059 DOI: 10.3389/fpls.2019.00814] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 06/06/2019] [Indexed: 06/09/2023]
Abstract
Phenotypic measurements under controlled cultivation conditions are essential to gain a mechanistic understanding of plant responses to environmental impacts and thus for knowledge-based improvement of their performance under natural field conditions. Twenty maize inbred lines (ILs) were phenotyped in response to two levels of water and nitrogen supply (control and stress) and combined nitrogen and water deficit. Over a course of 5 weeks (from about 4-leaf stage to the beginning of the reproductive stage), maize phenology and growth were monitored by using a high-throughput phenotyping platform for daily acquisition of images in different spectral ranges. The focus of the present study is on the measurements taken at the time of maximum water stress (for traits that reflect plant physiological properties) and at the end of the experiment (for traits that reflect plant architectural and biomass-related traits). Twenty-five phenotypic traits extracted from the digital image data that support biological interpretation of plant growth were selected for their predictive value for mid-season shoot biomass accumulation. Measured fresh and dry weights after harvest were used to calculate various indices (water-use efficiency, physiological nitrogen-use efficiency, specific plant weight) and to establish correlations with image-derived phenotypic features. Also, score indices based on dry weight were used to identify contrasting ILs in terms of productivity and tolerance to stress, and their means for image-derived and manually measured traits were compared. Color-related traits appear to be indicative of plant performance and photosystem II operating efficiency might be an importance physiological parameter of biomass accumulation, particularly under severe stress conditions. Also, genotypes showing greater leaf area may be better adapted to abiotic stress conditions.
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Affiliation(s)
- Dejan Dodig
- Department for Research and Development, Maize Research Institute Zemun Polje, Belgrade, Serbia
| | - Sofija Božinović
- Department for Research and Development, Maize Research Institute Zemun Polje, Belgrade, Serbia
| | - Ana Nikolić
- Department for Research and Development, Maize Research Institute Zemun Polje, Belgrade, Serbia
| | - Miroslav Zorić
- Department for Maize, Institute of Field and Vegetable Crops, Novi Sad, Serbia
| | - Jelena Vančetović
- Department for Research and Development, Maize Research Institute Zemun Polje, Belgrade, Serbia
| | | | - Nenad Delić
- Department for Research and Development, Maize Research Institute Zemun Polje, Belgrade, Serbia
| | - Kathleen Weigelt-Fischer
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Astrid Junker
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Thomas Altmann
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
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18
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Chedraoui S, Abi-Rizk A, El-Beyrouthy M, Chalak L, Ouaini N, Rajjou L. Capparis spinosa L. in A Systematic Review: A Xerophilous Species of Multi Values and Promising Potentialities for Agrosystems under the Threat of Global Warming. FRONTIERS IN PLANT SCIENCE 2017; 8:1845. [PMID: 29118777 PMCID: PMC5661020 DOI: 10.3389/fpls.2017.01845] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Accepted: 10/10/2017] [Indexed: 05/13/2023]
Abstract
Caper (Capparis spinosa L.) is a xerophytic shrub with a remarkable adaptability to harsh environments. This plant species is of great interest for its medicinal/pharmacological properties and its culinary uses. Its phytochemical importance relies on many bioactive components present in different organs and its cultivation can be of considerable economic value. Moreover, taxonomic identification of C. spinosa L. has been difficult due to its wide heterogeneity, and many authors fell into confusion due to the scarcity of genetic studies. The present review summarizes information concerning C. spinosa L. including agronomic performance, botanical description, taxonomical approaches, traditional pharmacological uses, phytochemical evaluation and genetic studies. This knowledge represents an important tool for further research studies and agronomic development on this indigenous species with respect to the emerging climatic change in the Eastern Mediterranean countries. Indeed, this world region is particularly under the threat of global warming and it appears necessary to rethink agricultural systems to adapt them to current and futures challenging environmental conditions. Capparis spinosa L. could be a part of this approach. So, this review presents a state of the art considering caper as a potential interesting crop under arid or semi-arid regions (such as Eastern Mediterranean countries) within the climate change context. The aim is to raise awareness in the scientific community (geneticists, physiologists, ecophysiologists, agronomists, …) about the caper strengths and interest to the development of this shrub as a crop.
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Affiliation(s)
- Stephanie Chedraoui
- IJPB, Institut Jean-Pierre Bourgin (INRA, AgroParisTech, CNRS, Université Paris-Saclay), Saclay Plant Sciences (SPS)-RD10, Versailles, France
- Faculty of Agricultural and Food Science, Holy Spirit University of Kaslik, Jounieh, Lebanon
| | - Alain Abi-Rizk
- Faculty of Agricultural and Food Science, Holy Spirit University of Kaslik, Jounieh, Lebanon
| | - Marc El-Beyrouthy
- Faculty of Agricultural and Food Science, Holy Spirit University of Kaslik, Jounieh, Lebanon
| | - Lamis Chalak
- Faculty of Agricultural Sciences, Lebanese University, Beirut, Lebanon
| | - Naim Ouaini
- Faculty of Agricultural and Food Science, Holy Spirit University of Kaslik, Jounieh, Lebanon
| | - Loïc Rajjou
- IJPB, Institut Jean-Pierre Bourgin (INRA, AgroParisTech, CNRS, Université Paris-Saclay), Saclay Plant Sciences (SPS)-RD10, Versailles, France
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Shi Y, Gao L, Wu Z, Zhang X, Wang M, Zhang C, Zhang F, Zhou Y, Li Z. Genome-wide association study of salt tolerance at the seed germination stage in rice. BMC PLANT BIOLOGY 2017; 17:92. [PMID: 28558653 PMCID: PMC5450148 DOI: 10.1186/s12870-017-1044-0] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 05/22/2017] [Indexed: 05/18/2023]
Abstract
BACKGROUND Improving the salt tolerance of direct-seeding rice at the seed germination stage is a major breeding goal in many Asian rice-growing countries, where seedlings must often establish in soils with a high salt content. Thus, it is important to understand the genetic mechanisms of salt tolerance in rice and to screen for germplasm with salt tolerance at the seed germination stage. Here, we investigated seven seed germination-related traits under control and salt-stress conditions and conducted a genome-wide association study based on the re-sequencing of 478 diverse rice accessions. RESULTS The analysis used a mixed linear model and was based on 6,361,920 single nucleotide polymorphisms in 478 rice accessions grouped into whole, indica, and non-indica panels. Eleven loci containing 22 significant salt tolerance-associated single nucleotide polymorphisms were identified based on the stress-susceptibility indices (SSIs) of vigor index (VI) and mean germination time (MGT). From the SSI of VI, six major loci were identified, explaining 20.2% of the phenotypic variation. From the SSI of MGT, five major loci were detected, explaining 26.4% of the phenotypic variation. Of these, seven loci on chromosomes 1, 5, 6, 11, and 12 were close to six previously identified quantitative gene loci/genes related to tolerance to salinity or other abiotic stresses. The strongest association region for the SSI of MGT was identified in a ~ 13.3 kb interval (15450039-15,463,330) on chromosome 1, near salt-tolerance quantitative trait loci controlling the Na+: K+ ratio, total Na+ uptake, and total K+ concentration. The strongest association region for the SSI of VI was detected in a ~ 164.2 kb interval (526662-690,854) on chromosome 2 harboring two nitrate transporter family genes (OsNRT2.1 and OsNRT2.2), which affect gene expression under salt stress. The haplotype analysis indicated that OsNRT2.2 was associated with subpopulation differentiation and its minor/rare tolerant haplotype was detected. CONCLUSIONS These results provide valuable information for salt tolerance-related gene cloning and for understanding the genetic mechanisms of salt tolerance at the seed germination stage. This information will be useful to improve the salt tolerance of direct-seeding rice varieties by genomic selection or marker-assisted selection.
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Affiliation(s)
- Yingyao Shi
- Anhui Agricultural University, 130 West Chang-Jiang Street, Hefei, 230036 China
| | - Lingling Gao
- Anhui Agricultural University, 130 West Chang-Jiang Street, Hefei, 230036 China
| | - Zhichao Wu
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan-Cun Street, Beijing, 100081 China
| | - Xiaojing Zhang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan-Cun Street, Beijing, 100081 China
| | - Mingming Wang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan-Cun Street, Beijing, 100081 China
| | - Congshun Zhang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan-Cun Street, Beijing, 100081 China
| | - Fan Zhang
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan-Cun Street, Beijing, 100081 China
| | - Yongli Zhou
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan-Cun Street, Beijing, 100081 China
- Shenzhen Institute of Breeding and Innovation, Chinese Academy of Agricultural Sciences, 7 Peng-Fei Road, Da-Peng District, Shenzhen, 518120 China
| | - Zhikang Li
- Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan-Cun Street, Beijing, 100081 China
- Shenzhen Institute of Breeding and Innovation, Chinese Academy of Agricultural Sciences, 7 Peng-Fei Road, Da-Peng District, Shenzhen, 518120 China
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20
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Wang H, Niu H, Zhai Y, Lu M. Characterization of BiP Genes from Pepper ( Capsicum annuum L.) and the Role of CaBiP1 in Response to Endoplasmic Reticulum and Multiple Abiotic Stresses. FRONTIERS IN PLANT SCIENCE 2017; 8:1122. [PMID: 28702041 PMCID: PMC5487487 DOI: 10.3389/fpls.2017.01122] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 06/12/2017] [Indexed: 05/18/2023]
Abstract
Adverse environmental conditions have a detrimental impact on crop growth and development, and cause protein denaturation or misfolding. The binding protein (BiP) plays an important protective role by alleviating endoplasmic reticulum (ER) stress induced by misfolded proteins. In this study, we characterized three BiP genes (CaBiP1, CaBiP2, and CaBiP3) in pepper, an economically important vegetable and spice species. The role of CaBiP1 in plant tolerance to ER stress and adverse environmental conditions (including heat, salinity, osmotic and drought stress) were investigated. All the expected functional and signaling domains were detected in three BiP proteins, but the motifs and exon-intron distribution differed slightly in CaBiP3. CaBiP1 and CaBiP2 were constitutively expressed in all the tested tissues under both normal and stressed conditions, whereas CaBiP3 was mainly expressed following stress. Silencing of CaBiP1 reduced pepper tolerance to ER stress and various environment stresses, and was accompanied by increased H2O2 accumulation, MDA content, relative electric leakage (REL), water loss rate, and a reduction in soluble protein content and relative water content (RWC) in the leaves. Conversely, overexpression of CaBiP1 in Arabidopsis enhanced tolerance to ER stress and multiple environment stresses, as demonstrated by an increase in germination rate, root length, survival rate, RWC, the unfolded protein response (UPR) pathway, and a decrease in water loss rate. Our results suggest that CaBiP1 may contribute to plant tolerance to abiotic stresses by reducing ROS accumulation, increasing the water-retention ability, and stimulating UPR pathways and expression of stress-related genes.
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