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Quentin AG, Rodemann T, Doutreleau MF, Moreau M, Davies NW, Millard P. Application of near-infrared spectroscopy for estimation of non-structural carbohydrates in foliar samples of Eucalyptus globulus Labilladière. TREE PHYSIOLOGY 2017; 37:131-141. [PMID: 28173560 DOI: 10.1093/treephys/tpw083] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2015] [Revised: 05/05/2016] [Accepted: 07/24/2016] [Indexed: 05/26/2023]
Abstract
Near-infrared reflectance spectroscopy (NIRS) is frequently used for the assessment of key nutrients of forage or crops but remains underused in ecological and physiological studies, especially to quantify non-structural carbohydrates. The aim of this study was to develop calibration models to assess the content in soluble sugars (fructose, glucose, sucrose) and starch in foliar material of Eucalyptus globulus. A partial least squares (PLS) regression was used on the sample spectral data and was compared to the contents measured using standard wet chemistry methods. The calibration models were validated using a completely independent set of samples. We used key indicators such as the ratio of prediction to deviation (RPD) and the range error ratio to give an assessment of the performance of the calibration models. Accurate calibration models were obtained for fructose and sucrose content (R2 > 0.85, root mean square error of prediction (RMSEP) of 0.95%–1.26% in the validation models), followed by sucrose and total soluble sugar content (R2 ~ 0.70 and RMSEP > 2.3%). In comparison to the others, calibration of the starch model performed very poorly with RPD = 1.70. This study establishes the ability of the NIRS calibration model to infer soluble sugar content in foliar samples of E. globulus in a rapid and cost-effective way. We suggest a complete redevelopment of the starch analysis using more specific quantification such as an HPLC-based technique to reach higher performance in the starch model. Overall, NIRS could serve as a high-throughput phenotyping tool to study plant response to stress factors.
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Affiliation(s)
- A G Quentin
- CSIRO Land and Water, Private Bag 12, Hobart, Tasmania, Australia
| | - T Rodemann
- Central Science Laboratory, University of Tasmania, Private Bag 74, Hobart, Tasmania , Australia
| | - M-F Doutreleau
- Agri'Terr Unit, Esitpa, 3 rue du Tronquet, Mont-Saint-Aignan, France
| | - M Moreau
- Agri'Terr Unit, Esitpa, 3 rue du Tronquet, Mont-Saint-Aignan, France
| | - N W Davies
- Central Science Laboratory, University of Tasmania, Private Bag 74, Hobart, Tasmania , Australia
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Sack L, Ball MC, Brodersen C, Davis SD, Des Marais DL, Donovan LA, Givnish TJ, Hacke UG, Huxman T, Jansen S, Jacobsen AL, Johnson DM, Koch GW, Maurel C, McCulloh KA, McDowell NG, McElrone A, Meinzer FC, Melcher PJ, North G, Pellegrini M, Pockman WT, Pratt RB, Sala A, Santiago LS, Savage JA, Scoffoni C, Sevanto S, Sperry J, Tyerman SD, Way D, Holbrook NM. Plant hydraulics as a central hub integrating plant and ecosystem function: meeting report for 'Emerging Frontiers in Plant Hydraulics' (Washington, DC, May 2015). PLANT, CELL & ENVIRONMENT 2016; 39:2085-94. [PMID: 27037757 DOI: 10.1111/pce.12732] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Accepted: 03/06/2016] [Indexed: 05/25/2023]
Abstract
Water plays a central role in plant biology and the efficiency of water transport throughout the plant affects both photosynthetic rate and growth, an influence that scales up deterministically to the productivity of terrestrial ecosystems. Moreover, hydraulic traits mediate the ways in which plants interact with their abiotic and biotic environment. At landscape to global scale, plant hydraulic traits are important in describing the function of ecological communities and ecosystems. Plant hydraulics is increasingly recognized as a central hub within a network by which plant biology is connected to palaeobiology, agronomy, climatology, forestry, community and ecosystem ecology and earth-system science. Such grand challenges as anticipating and mitigating the impacts of climate change, and improving the security and sustainability of our food supply rely on our fundamental knowledge of how water behaves in the cells, tissues, organs, bodies and diverse communities of plants. A workshop, 'Emerging Frontiers in Plant Hydraulics' supported by the National Science Foundation, was held in Washington DC, 2015 to promote open discussion of new ideas, controversies regarding measurements and analyses, and especially, the potential for expansion of up-scaled and down-scaled inter-disciplinary research, and the strengthening of connections between plant hydraulic research, allied fields and global modelling efforts.
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Affiliation(s)
- Lawren Sack
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, 621 Charles E. Young Drive South, Los Angeles, CA, 90095, USA
| | - Marilyn C Ball
- Research School of Biology, Australian National University, Canberra, Australian Capital Territory, 0200, Australia
| | - Craig Brodersen
- School of Forestry & Environmental Studies, Yale University, 195 Prospect Street, New Haven, CT, 06511, USA
| | - Stephen D Davis
- Natural Science Division, Pepperdine University, Malibu, CA, 90263, USA
| | - David L Des Marais
- Arnold Arboretum, Harvard University, Cambridge, MA, 02131, USA
- Department of Organismic and Evolutionary Biology, Harvard University, Boston, MA, 02138, USA
| | - Lisa A Donovan
- Department of Plant Biology, University of Georgia, Athens, GA, 30602, USA
| | - Thomas J Givnish
- Department of Botany, University of Wisconsin Madison, Madison, WI, 53706, USA
| | - Uwe G Hacke
- Department of Renewable Resources, University of Alberta, Edmonton, Alberta, T6G 2E3, Canada
| | - Travis Huxman
- Ecology and Evolutionary Biology & Center for Environmental Biology, University of California, Irvine, CA, 92697, USA
| | - Steven Jansen
- Ulm University, Institute of Systematic Botany and Ecology, Albert-Einstein-Allee 11, Ulm, 89081, Germany
| | - Anna L Jacobsen
- Department of Biology, California State University, Bakersfield, CA, 93311, USA
| | - Daniel M Johnson
- Department of Forest, Rangeland and Fire Sciences, University of Idaho, Moscow, ID, 83844, USA
| | - George W Koch
- Center for Ecosystem Science and Society, and Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86011, USA
| | - Christophe Maurel
- Biochimie et Physiologie Moléculaire des Plantes, UMR 5004, INRA-CNRS-Sup Agro-Université de Montpellier, 2 Place Viala, Montpellier, F-34060, France
| | | | - Nate G McDowell
- Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Andrew McElrone
- Department of Viticulture and Enology, University of California, Davis, CA, 95616, USA
- USDA-Agricultural Research Service, Davis, CA, 95616, USA
| | - Frederick C Meinzer
- Pacific Northwest Research Station, USDA Forest Service, Corvallis, OR, 97331, USA
| | - Peter J Melcher
- Department of Biology, Ithaca College, Ithaca, NY, 14850, USA
| | - Gretchen North
- Department of Biology, Occidental College, Los Angeles, CA, 90041, USA
| | - Matteo Pellegrini
- Department of Molecular, Cell, and Developmental Biology, University of California Los Angeles, 621 Charles E. Young Drive South, Los Angeles, CA, 90095, USA
| | - William T Pockman
- Department of Biology, MSC03 2020, University of New Mexico, Albuquerque, NM, 87131, USA
| | - R Brandon Pratt
- Department of Biology, California State University, Bakersfield, CA, 93311, USA
| | - Anna Sala
- Division of Biological Sciences, University of Montana, Missoula, MT, 59812, USA
| | - Louis S Santiago
- Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA
| | - Jessica A Savage
- Arnold Arboretum, Harvard University, Cambridge, MA, 02131, USA
- Department of Organismic and Evolutionary Biology, Harvard University, Boston, MA, 02138, USA
| | - Christine Scoffoni
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, 621 Charles E. Young Drive South, Los Angeles, CA, 90095, USA
| | - Sanna Sevanto
- Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - John Sperry
- Department of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT, 84112, USA
| | - Stephen D Tyerman
- ARC Centre of Excellence in Plant Energy Biology, School of Agriculture, Food and Wine, Waite Research Precinct, The University of Adelaide, PMB 1, Glen Osmond, South Australia, 5064, Australia
| | - Danielle Way
- Department of Biology, Western University, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada
| | - N Michele Holbrook
- Department of Organismic and Evolutionary Biology, Harvard University, Boston, MA, 02138, USA
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