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Contreras-Cornejo HA, Schmoll M, Esquivel-Ayala BA, González-Esquivel CE, Rocha-Ramírez V, Larsen J. Mechanisms for plant growth promotion activated by Trichoderma in natural and managed terrestrial ecosystems. Microbiol Res 2024; 281:127621. [PMID: 38295679 DOI: 10.1016/j.micres.2024.127621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 11/26/2023] [Accepted: 01/13/2024] [Indexed: 02/16/2024]
Abstract
Trichoderma spp. are free-living fungi present in virtually all terrestrial ecosystems. These soil fungi can stimulate plant growth and increase plant nutrient acquisition of macro- and micronutrients and water uptake. Generally, plant growth promotion by Trichoderma is a consequence of the activity of potent fungal signaling metabolites diffused in soil with hormone-like activity, including indolic compounds as indole-3-acetic acid (IAA) produced at concentrations ranging from 14 to 234 μg l-1, and volatile organic compounds such as sesquiterpene isoprenoids (C15), 6-pentyl-2H-pyran-2-one (6-PP) and ethylene (ET) produced at levels from 10 to 120 ng over a period of six days, which in turn, might impact plant endogenous signaling mechanisms orchestrated by plant hormones. Plant growth stimulation occurs without the need of physical contact between both organisms and/or during root colonization. When associated with plants Trichoderma may cause significant biochemical changes in plant content of carbohydrates, amino acids, organic acids and lipids, as detected in Arabidopsis thaliana, maize (Zea mays), tomato (Lycopersicon esculentum) and barley (Hordeum vulgare), which may improve the plant health status during the complete life cycle. Trichoderma-induced plant beneficial effects such as mechanisms of defense and growth are likely to be inherited to the next generations. Depending on the environmental conditions perceived by the fungus during its interaction with plants, Trichoderma can reprogram and/or activate molecular mechanisms commonly modulated by IAA, ET and abscisic acid (ABA) to induce an adaptative physiological response to abiotic stress, including drought, salinity, or environmental pollution. This review, provides a state of the art overview focused on the canonical mechanisms of these beneficial fungi involved in plant growth promotion traits under different environmental scenarios and shows new insights on Trichoderma metabolites from different chemical classes that can modulate specific plant growth aspects. Also, we suggest new research directions on Trichoderma spp. and their secondary metabolites with biological activity on plant growth.
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Affiliation(s)
- Hexon Angel Contreras-Cornejo
- Laboratorio Nacional de Innovación Ecotecnológica para la Sustentabilidad (LANIES), Instituto de Investigaciones en Ecosistemas y Sustentabilidad (IIES), UNAM, Mexico; IIES-UNAM, Antigua carretera a Pátzcuaro No. 8701, Col. Ex-Hacienda de San José de la Huerta, 58190 Morelia, Michoacán, Mexico.
| | - Monika Schmoll
- Division of Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, Centre of Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
| | - Blanca Alicia Esquivel-Ayala
- Laboratorio de Entomología, Facultad de Biología, Edificio B4, Universidad Michoacana de San Nicolás de Hidalgo, Gral. Francisco J. Múgica S/N, Ciudad Universitaria, CP 58030 Morelia, Michoacán, Mexico
| | - Carlos E González-Esquivel
- Laboratorio Nacional de Innovación Ecotecnológica para la Sustentabilidad (LANIES), Instituto de Investigaciones en Ecosistemas y Sustentabilidad (IIES), UNAM, Mexico; IIES-UNAM, Antigua carretera a Pátzcuaro No. 8701, Col. Ex-Hacienda de San José de la Huerta, 58190 Morelia, Michoacán, Mexico
| | - Victor Rocha-Ramírez
- Laboratorio Nacional de Innovación Ecotecnológica para la Sustentabilidad (LANIES), Instituto de Investigaciones en Ecosistemas y Sustentabilidad (IIES), UNAM, Mexico; IIES-UNAM, Antigua carretera a Pátzcuaro No. 8701, Col. Ex-Hacienda de San José de la Huerta, 58190 Morelia, Michoacán, Mexico
| | - John Larsen
- Laboratorio Nacional de Innovación Ecotecnológica para la Sustentabilidad (LANIES), Instituto de Investigaciones en Ecosistemas y Sustentabilidad (IIES), UNAM, Mexico; IIES-UNAM, Antigua carretera a Pátzcuaro No. 8701, Col. Ex-Hacienda de San José de la Huerta, 58190 Morelia, Michoacán, Mexico
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2
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Swiontek Brzezinska M, Shinde AH, Kaczmarek-Szczepańska B, Jankiewicz U, Urbaniak J, Boczkowski S, Zasada L, Ciesielska M, Dembińska K, Pałubicka K, Michalska-Sionkowska M. Biodegradability Study of Modified Chitosan Films with Cinnamic Acid and Ellagic Acid in Soil. Polymers (Basel) 2024; 16:574. [PMID: 38475259 DOI: 10.3390/polym16050574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 02/12/2024] [Accepted: 02/17/2024] [Indexed: 03/14/2024] Open
Abstract
Currently, natural polymer materials with bactericidal properties are extremely popular. Unfortunately, although the biopolymer material itself is biodegradable, its enrichment with bactericidal compounds may affect the efficiency of biodegradation by natural soil microflora. Therefore, the primary objective of this study was to evaluate the utility of fungi belonging to the genus Trichoderma in facilitating the degradation of chitosan film modified with cinnamic acid and ellagic acid in the soil environment. Only two strains (T.07 and T.14) used chitosan films as a source of carbon and nitrogen. However, their respiratory activity decreased with the addition of tested phenolic acids, especially cinnamic acid. Addition of Trichoderma isolates to the soil increased oxygen consumption during the biodegradation process compared with native microorganisms, especially after application of the T.07 and T.14 consortium. Isolates T.07 and T.14 showed high lipolytic (55.78 U/h and 62.21 U/h) and chitinase (43.03 U/h and 41.27 U/h) activities. Chitinase activity after incorporation of the materials into the soil was higher for samples enriched with T.07, T.14 and the consortium. The isolates were classified as Trichoderma sp. and Trichoderma koningii. Considering the outcomes derived from our findings, it is our contention that the application of Trichoderma isolates holds promise for expediting the degradation process of chitosan materials containing bactericidal compounds.
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Affiliation(s)
- Maria Swiontek Brzezinska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Toruń, Poland
| | - Ambika H Shinde
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Toruń, Poland
| | - Beata Kaczmarek-Szczepańska
- Department of Biomaterials and Cosmetics Chemistry, Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100 Toruń, Poland
| | - Urszula Jankiewicz
- Department of Biochemistry and Microbiology, Institute of Biology, Nowoursynowska 159, 02-776 Warsaw, Poland
| | - Joanna Urbaniak
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Toruń, Poland
| | - Sławomir Boczkowski
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Toruń, Poland
| | - Lidia Zasada
- Department of Biomaterials and Cosmetics Chemistry, Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100 Toruń, Poland
| | - Magdalena Ciesielska
- Department of Biomaterials and Cosmetics Chemistry, Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100 Toruń, Poland
| | - Katarzyna Dembińska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Toruń, Poland
| | - Krystyna Pałubicka
- Department of Conservation and Restoration of Paper and Leather, Nicolaus Copernicus University, ul. Sienkiewicza 30/32, 87-100 Toruń, Poland
| | - Marta Michalska-Sionkowska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Toruń, Poland
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Li Y, Chen Y, Fu Y, Shao J, Liu Y, Xuan W, Xu G, Zhang R. Signal communication during microbial modulation of root system architecture. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:526-537. [PMID: 37419655 DOI: 10.1093/jxb/erad263] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 07/06/2023] [Indexed: 07/09/2023]
Abstract
Every living organism on Earth depends on its interactions with other organisms. In the rhizosphere, plants and microorganisms constantly exchange signals and influence each other's behavior. Recent studies have shown that many beneficial rhizosphere microbes can produce specific signaling molecules that affect plant root architecture and therefore could have substantial effects on above-ground growth. This review examines these chemical signals and summarizes their mechanisms of action, with the aim of enhancing our understanding of plant-microbe interactions and providing references for the comprehensive development and utilization of these active components in agricultural production. In addition, we highlight future research directions and challenges, such as searching for microbial signals to induce primary root development.
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Affiliation(s)
- Yucong Li
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
- College of Environment and Ecology, Jiangsu Open University, Nanjing 210017, China
| | - Yu Chen
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Yansong Fu
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Jiahui Shao
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Yunpeng Liu
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Wei Xuan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing 210095, China
| | - Guohua Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing 210095, China
| | - Ruifu Zhang
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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Khan RAA, Najeeb S, Chen J, Wang R, Zhang J, Hou J, Liu T. Insights into the molecular mechanism of Trichoderma stimulating plant growth and immunity against phytopathogens. PHYSIOLOGIA PLANTARUM 2023; 175:e14133. [PMID: 38148197 DOI: 10.1111/ppl.14133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 11/30/2023] [Accepted: 12/04/2023] [Indexed: 12/28/2023]
Abstract
Trichoderma species have received significant interest as beneficial fungi for boosting plant growth and immunity against phytopathogens. By establishing a mutualistic relationship with plants, Trichoderma causes a series of intricate signaling events that eventually promote plant growth and improve disease resistance. The mechanisms contain the indirect or direct involvement of Trichoderma in enhancing plant growth by modulating phytohormones signaling pathways, improving uptake and accumulation of nutrients, and increasing soil bioavailability of nutrients. They contribute to plant resistance by stimulating systemic acquired resistance through salicylic acid, jasmonic acid, and ethylene signaling. A cascade of signal transduction processes initiated by the interaction of Trichoderma and plants regulate the expression of defense-related genes, resulting in the synthesis of defense hormones and pathogenesis-related proteins (PRPs), which collectively improve plant resistance. Additionally, advancements in omics technologies has led to the identification of key pathways, their regulating genes, and molecular interactions in the plant defense and growth promotion responses induced by Trichoderma. Deciphering the molecular mechanism behind Trichoderma's induction of plant defense and immunity is essential for harnessing the full plant beneficial potential of Trichoderma. This review article sheds light on the molecular mechanisms that underlie the positive effects of Trichoderma-induced plant immunity and growth and opens new opportunities for developing environmentally friendly and innovative approaches to improve plant immunity and growth.
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Affiliation(s)
- Raja Asad Ali Khan
- Sanya Nanfan Research Institute, Hainan University, Sanya, PR China
- School of Tropical Agriculture and Forestry, Engineering Center of Agricultural Microbial Preparation Research and Development of Hainan, Hainan University, Haikou, PR China
| | - Saba Najeeb
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jie Chen
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, PR, China
| | - Rui Wang
- Sanya Nanfan Research Institute, Hainan University, Sanya, PR China
- School of Tropical Agriculture and Forestry, Engineering Center of Agricultural Microbial Preparation Research and Development of Hainan, Hainan University, Haikou, PR China
| | - Jing Zhang
- Sanya Nanfan Research Institute, Hainan University, Sanya, PR China
- School of Tropical Agriculture and Forestry, Engineering Center of Agricultural Microbial Preparation Research and Development of Hainan, Hainan University, Haikou, PR China
| | - Jumei Hou
- Sanya Nanfan Research Institute, Hainan University, Sanya, PR China
- School of Tropical Agriculture and Forestry, Engineering Center of Agricultural Microbial Preparation Research and Development of Hainan, Hainan University, Haikou, PR China
| | - Tong Liu
- Sanya Nanfan Research Institute, Hainan University, Sanya, PR China
- School of Tropical Agriculture and Forestry, Engineering Center of Agricultural Microbial Preparation Research and Development of Hainan, Hainan University, Haikou, PR China
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Swiontek Brzezinska M, Kaczmarek-Szczepańska B, Dąbrowska GB, Michalska-Sionkowska M, Dembińska K, Richert A, Pejchalová M, Kumar SB, Kalwasińska A. Application Potential of Trichoderma in the Degradation of Phenolic Acid-Modified Chitosan. Foods 2023; 12:3669. [PMID: 37835322 PMCID: PMC10572696 DOI: 10.3390/foods12193669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 09/30/2023] [Accepted: 10/03/2023] [Indexed: 10/15/2023] Open
Abstract
The aim of the study was to determine the potential use of fungi of the genus Trichoderma for the degradation of phenolic acid-modified chitosan in compost. At the same time, the enzymatic activity in the compost was checked after the application of a preparation containing a suspension of the fungi Trichoderma (spores concentration 105/mL). The Trichoderma strains were characterized by high lipase and aminopeptidase activity, chitinase, and β-1,3-glucanases. T. atroviride TN1 and T. citrinoviride TN3 metabolized the modified chitosan films best. Biodegradation of modified chitosan films by native microorganisms in the compost was significantly less effective than after the application of a formulation composed of Trichoderma TN1 and TN3. Bioaugmentation with a Trichoderma preparation had a significant effect on the activity of all enzymes in the compost. The highest oxygen consumption in the presence of chitosan with tannic acid film was found after the application of the consortium of these strains (861 mg O2/kg after 21 days of incubation). Similarly, chitosan with gallic acid and chitosan with ferulic acid were found after the application of the consortium of these strains (849 mgO2/kg and 725 mg O2/kg after 21 days of incubation). The use of the Trichoderma consortium significantly increased the chitinase activity. The application of Trichoderma also offers many possibilities in sustainable agriculture. Trichoderma can not only degrade chitosan films, but also protect plants against fungal pathogens by synthesizing chitinases and β-1,3 glucanases with antifungal properties.
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Affiliation(s)
- Maria Swiontek Brzezinska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Torun, Poland; (M.M.-S.); (K.D.); (S.B.K.); (A.K.)
| | - Beata Kaczmarek-Szczepańska
- Department of Biomaterials and Cosmetics Chemistry, Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100 Torun, Poland
| | - Grażyna B. Dąbrowska
- Department of Genetics, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Torun, Poland; (G.B.D.); (A.R.)
| | - Marta Michalska-Sionkowska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Torun, Poland; (M.M.-S.); (K.D.); (S.B.K.); (A.K.)
| | - Katarzyna Dembińska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Torun, Poland; (M.M.-S.); (K.D.); (S.B.K.); (A.K.)
| | - Agnieszka Richert
- Department of Genetics, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Torun, Poland; (G.B.D.); (A.R.)
| | - Marcela Pejchalová
- Department of Biological and Biochemical Sciences, Faculty of Chemical Technology, University of Pardubice, Sudentska 573, 53210 Pardubice, Czech Republic;
| | - Sweta Binod Kumar
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Torun, Poland; (M.M.-S.); (K.D.); (S.B.K.); (A.K.)
| | - Agnieszka Kalwasińska
- Department of Environmental Microbiology and Biotechnology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Torun, Lwowska 1, 87-100 Torun, Poland; (M.M.-S.); (K.D.); (S.B.K.); (A.K.)
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6
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Núñez-Cano J, Romera FJ, Prieto P, García MJ, Sevillano-Caño J, Agustí-Brisach C, Pérez-Vicente R, Ramos J, Lucena C. Effect of the Nonpathogenic Strain Fusarium oxysporum FO12 on Fe Acquisition in Rice ( Oryza sativa L.) Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:3145. [PMID: 37687390 PMCID: PMC10489696 DOI: 10.3390/plants12173145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 08/29/2023] [Accepted: 08/30/2023] [Indexed: 09/10/2023]
Abstract
Rice (Oryza sativa L.) is a very important cereal worldwide, since it is the staple food for more than half of the world's population. Iron (Fe) deficiency is among the most important agronomical concerns in calcareous soils where rice plants may suffer from this deficiency. Current production systems are based on the use of high-yielding varieties and the application of large quantities of agrochemicals, which can cause major environmental problems. The use of beneficial rhizosphere microorganisms is considered a relevant sustainable alternative to synthetic fertilizers. The main goal of this study was to determine the ability of the nonpathogenic strain Fusarium oxysporum FO12 to induce Fe-deficiency responses in rice plants and its effects on plant growth and Fe chlorosis. Experiments were carried out under hydroponic system conditions. Our results show that the root inoculation of rice plants with FO12 promotes the production of phytosiderophores and plant growth while reducing Fe chlorosis symptoms after several days of cultivation. Moreover, Fe-related genes are upregulated by FO12 at certain times in inoculated plants regardless of Fe conditions. This microorganism also colonizes root cortical tissues. In conclusion, FO12 enhances Fe-deficiency responses in rice plants, achieves growth promotion, and reduces Fe chlorosis symptoms.
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Affiliation(s)
- Jorge Núñez-Cano
- Departamento de Agronomía (Unit of Excellence ‘María de Maeztu’ 2020-24), Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain; (J.N.-C.); (F.J.R.); (M.J.G.); (J.S.-C.); (C.A.-B.)
| | - Francisco J. Romera
- Departamento de Agronomía (Unit of Excellence ‘María de Maeztu’ 2020-24), Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain; (J.N.-C.); (F.J.R.); (M.J.G.); (J.S.-C.); (C.A.-B.)
| | - Pilar Prieto
- Departamento de Mejora Genética, Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), 14004 Córdoba, Spain;
| | - María J. García
- Departamento de Agronomía (Unit of Excellence ‘María de Maeztu’ 2020-24), Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain; (J.N.-C.); (F.J.R.); (M.J.G.); (J.S.-C.); (C.A.-B.)
| | - Jesús Sevillano-Caño
- Departamento de Agronomía (Unit of Excellence ‘María de Maeztu’ 2020-24), Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain; (J.N.-C.); (F.J.R.); (M.J.G.); (J.S.-C.); (C.A.-B.)
| | - Carlos Agustí-Brisach
- Departamento de Agronomía (Unit of Excellence ‘María de Maeztu’ 2020-24), Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain; (J.N.-C.); (F.J.R.); (M.J.G.); (J.S.-C.); (C.A.-B.)
| | - Rafael Pérez-Vicente
- Departamento de Botánica, Ecología y Fisiología Vegetal, Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain;
| | - José Ramos
- Departamento de Química Agrícola, Edafología y Microbiología, Edificio Severo Ochoa (C-6), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain;
| | - Carlos Lucena
- Departamento de Agronomía (Unit of Excellence ‘María de Maeztu’ 2020-24), Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), Universidad de Córdoba, 14071 Córdoba, Spain; (J.N.-C.); (F.J.R.); (M.J.G.); (J.S.-C.); (C.A.-B.)
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7
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Thomas G, Rusman Q, Morrison WR, Magalhães DM, Dowell JA, Ngumbi E, Osei-Owusu J, Kansman J, Gaffke A, Pagadala Damodaram KJ, Kim SJ, Tabanca N. Deciphering Plant-Insect-Microorganism Signals for Sustainable Crop Production. Biomolecules 2023; 13:997. [PMID: 37371577 DOI: 10.3390/biom13060997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 06/12/2023] [Accepted: 06/13/2023] [Indexed: 06/29/2023] Open
Abstract
Agricultural crop productivity relies on the application of chemical pesticides to reduce pest and pathogen damage. However, chemical pesticides also pose a range of ecological, environmental and economic penalties. This includes the development of pesticide resistance by insect pests and pathogens, rendering pesticides less effective. Alternative sustainable crop protection tools should therefore be considered. Semiochemicals are signalling molecules produced by organisms, including plants, microbes, and animals, which cause behavioural or developmental changes in receiving organisms. Manipulating semiochemicals could provide a more sustainable approach to the management of insect pests and pathogens across crops. Here, we review the role of semiochemicals in the interaction between plants, insects and microbes, including examples of how they have been applied to agricultural systems. We highlight future research priorities to be considered for semiochemicals to be credible alternatives to the application of chemical pesticides.
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Affiliation(s)
- Gareth Thomas
- Protecting Crops and the Environment, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Quint Rusman
- Department of Systematic and Evolutionary Botany, University of Zürich, Zollikerstrasse 107, 8008 Zürich, Switzerland
| | - William R Morrison
- United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS 66502, USA
| | - Diego M Magalhães
- Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil
| | - Jordan A Dowell
- Department of Plant Sciences, University of California, Davis, One Shields Ave., Davis, CA 95616, USA
| | - Esther Ngumbi
- Department of Entomology, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
| | - Jonathan Osei-Owusu
- Department of Biological, Physical and Mathematical Sciences, University of Environment and Sustainable Development, Somanya EY0329-2478, Ghana
| | - Jessica Kansman
- Center for Chemical Ecology, Department of Entomology, The Pennsylvania State University, University Park, PA 16802, USA
| | - Alexander Gaffke
- United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Center for Medical, Agricultural, and Veterinary Entomology, 6383 Mahan Dr., Tallahassee, FL 32308, USA
| | | | - Seong Jong Kim
- United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Natural Products Utilization Research Unit, University, MS 38677, USA
| | - Nurhayat Tabanca
- United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Subtropical Horticulture Research Station, 13601 Old Cutler Rd., Miami, FL 33158, USA
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8
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Ravelo-Ortega G, Raya-González J, López-Bucio J. Compounds from rhizosphere microbes that promote plant growth. CURRENT OPINION IN PLANT BIOLOGY 2023; 73:102336. [PMID: 36716513 DOI: 10.1016/j.pbi.2023.102336] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 12/09/2022] [Accepted: 01/03/2023] [Indexed: 06/10/2023]
Abstract
The rhizosphere is the soil-plant interface colonized by bacterial and fungal species that exert growth-promoting and adaptive benefits. The plant-bacteria relationships rely upon the perception of volatile organic compounds (VOCs), canonical phytohormones such as auxins and cytokinins, and the bacterial quorum sensing-related N-acyl-L-homoserine lactones and cyclodipeptides. On the other hand, plant-beneficial Trichoderma fungi emit highly active VOCs, including 6-pentyl-2H-pyran-2-one (6-PP), and β-caryophyllene, which contribute to plant morphogenesis, but also into how these microbes spread over roots or live as endophytes. Here, we describe recent findings concerning how compounds from beneficial bacteria and fungi affect root architecture and advance into the signaling events that mediate microbial recognition.
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Affiliation(s)
- Gustavo Ravelo-Ortega
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo. Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico
| | - Javier Raya-González
- Facultad de Químico Farmacobiología, Universidad Michoacana de San Nicolás de Hidalgo, C. P. 58240, Morelia, Michoacán, Mexico
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo. Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico.
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9
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Elhamouly NA, Hewedy OA, Zaitoon A, Miraples A, Elshorbagy OT, Hussien S, El-Tahan A, Peng D. The hidden power of secondary metabolites in plant-fungi interactions and sustainable phytoremediation. FRONTIERS IN PLANT SCIENCE 2022; 13:1044896. [PMID: 36578344 PMCID: PMC9790997 DOI: 10.3389/fpls.2022.1044896] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
Abstract
The global environment is dominated by various small exotic substances, known as secondary metabolites, produced by plants and microorganisms. Plants and fungi are particularly plentiful sources of these molecules, whose physiological functions, in many cases, remain a mystery. Fungal secondary metabolites (SM) are a diverse group of substances that exhibit a wide range of chemical properties and generally fall into one of four main family groups: Terpenoids, polyketides, non-ribosomal peptides, or a combination of the latter two. They are incredibly varied in their functions and are often related to the increased fitness of the respective fungus in its environment, often competing with other microbes or interacting with plant species. Several of these metabolites have essential roles in the biological control of plant diseases by various beneficial microorganisms used for crop protection and biofertilization worldwide. Besides direct toxic effects against phytopathogens, natural metabolites can promote root and shoot development and/or disease resistance by activating host systemic defenses. The ability of these microorganisms to synthesize and store biologically active metabolites that are a potent source of novel natural compounds beneficial for agriculture is becoming a top priority for SM fungi research. In this review, we will discuss fungal-plant secondary metabolites with antifungal properties and the role of signaling molecules in induced and acquired systemic resistance activities. Additionally, fungal secondary metabolites mimic plant promotion molecules such as auxins, gibberellins, and abscisic acid, which modulate plant growth under biotic stress. Moreover, we will present a new trend regarding phytoremediation applications using fungal secondary metabolites to achieve sustainable food production and microbial diversity in an eco-friendly environment.
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Affiliation(s)
- Neveen Atta Elhamouly
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- Department of Botany, Faculty of Agriculture, Menoufia University, Shibin El-Kom, Egypt
| | - Omar A. Hewedy
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
| | - Amr Zaitoon
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - Angelica Miraples
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
| | - Omnia T. Elshorbagy
- School of Natural and Environmental Sciences, Faculty of Science, Agriculture & Engineering, Newcastle University, Newcastle upon Tyne, United Kingdom
| | - Suzan Hussien
- Botany Department Faculty of Science, Mansoura University, Mansoura, Egypt
| | - Amira El-Tahan
- Plant Production Department, Arid Lands Cultivation Research Institute, the City of Scientific Research and Technological Applications, City of Scientific Research and Technological Applications (SRTA-City), Borg El Arab, Alexandria, Egypt
| | - Deliang Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
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10
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Bhagat PK, Sharma D, Verma D, Singh K, Sinha AK. Arabidopsis MPK3 and MPK6 regulates D-glucose signaling and interacts with G-protein, RGS1. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 325:111484. [PMID: 36195119 DOI: 10.1016/j.plantsci.2022.111484] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 08/05/2022] [Accepted: 09/29/2022] [Indexed: 06/16/2023]
Abstract
Sugar as a signaling molecule has attracted lots of attention. Even though several kinases have been shown to play a crucial role in the sugar signaling and response to exogenous D-glucose (Glc), the information on the involvement of MAP kinase cascade in sugar signaling has remain largely unexplored. In this report we demonstrate that MAP kinase signaling is essential for sensitivity to higher concentrations of D-Glc in Arabidopsis. We found that D-Glc activates MAP kinases, MPK3 and MPK6 in a concentration and time-dependent manner. The mutants of mpk3 and mpk6 display hyposensitivity to 6% D-Glc during seed germination, cotyledon greening and root growth. Interestingly, the altered sensitivity to increased D-Glc is severely enhanced by addition of 1% Sucrose in the media. Our study also deciphered the role of one of the Glc sensor proteins, RGS1 that interacts and gets phosphorylated at its C-terminal domain by MPK3 and MPK6. Overall our study provides a new insight on the involvement of MAP kinases in association with G-proteins that might regulate sugar signaling and sugar responsive growth and development in Arabidopsis.
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Affiliation(s)
| | - Deepika Sharma
- National Institute of Plant Genome Research, New Delhi, Delhi 110067, India
| | - Deepanjali Verma
- National Institute of Plant Genome Research, New Delhi, Delhi 110067, India
| | - Kirti Singh
- National Institute of Plant Genome Research, New Delhi, Delhi 110067, India
| | - Alok Krishna Sinha
- National Institute of Plant Genome Research, New Delhi, Delhi 110067, India.
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11
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García-Valle KM, Ruíz-Herrera LF, Ravelo-Ortega G, López-Bucio JS, Guevara-García ÁA, López-Bucio J. MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1 mediates root sensing of serotonin through jasmonic acid signaling and modulating reactive oxygen species. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 323:111396. [PMID: 35878696 DOI: 10.1016/j.plantsci.2022.111396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 07/19/2022] [Accepted: 07/21/2022] [Indexed: 06/15/2023]
Abstract
Serotonin (5-hydroxytryptamine) acts as a neurotransmitter in mammals and is widely distributed in the plant kingdom, where it influences root growth and defense. Mitogen-Activated Protein Kinases (MAPKs) and MAPK phosphatases (MKPs) play critical functions in decoding hormonal signalling, but their possible roles in mediating serotonin responses await investigation. In this report, we unveiled positive roles for the MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE1 (MKP1) in the inhibition of the primary root growth, cell division, meristem structure, and differentiation events in Arabidopsis seedlings. mkp1 mutants were less sensitive to jasmonic acid applications that halted primary root growth in wild-type (WT) plants, and consistently, the neurotransmitter activated the expression of the JASMONATE ZIM-domain (JAZ) proteins JAZ1 and JAZ10, two critical proteins orchestrating jasmonic acid signalling. This effect correlated with exacerbated production of endogenous reactive oxygen species (ROS) in the WT, a process constitutively manifested in mkp1 mutants. These data help to clarify the relationship between serotonin and growth/defense trade-offs, and reveal the importance of the MAPK pathway in root development through ROS production.
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Affiliation(s)
- Karen Monserrat García-Valle
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030 Morelia, Michoacán, Mexico.
| | - León Francisco Ruíz-Herrera
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030 Morelia, Michoacán, Mexico.
| | - Gustavo Ravelo-Ortega
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030 Morelia, Michoacán, Mexico.
| | - Jesús Salvador López-Bucio
- Investigador de Cátedras CONACYT, Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, Michoacán, Mexico.
| | - Ángel Arturo Guevara-García
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, 62250 Cuernavaca, Morelos, Mexico.
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030 Morelia, Michoacán, Mexico.
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12
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Zhang Y, Xiao J, Yang K, Wang Y, Tian Y, Liang Z. Transcriptomic and metabonomic insights into the biocontrol mechanism of Trichoderma asperellum M45a against watermelon Fusarium wilt. PLoS One 2022; 17:e0272702. [PMID: 35947630 PMCID: PMC9365129 DOI: 10.1371/journal.pone.0272702] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 07/26/2022] [Indexed: 11/18/2022] Open
Abstract
Watermelon (Citrullus lanatus) is one of the most popular fruit crops. However, Fusarium wilt (FW) is a serious soil-borne disease caused by Fusarium oxysporum f. sp. niveum (FON) that severely limits the development of the watermelon industry. Trichoderma spp. is an important plant anti-pathogen biocontrol agent. The results of our previous study indicated that Trichoderma asperellum M45a (T. asperellum M45a) could control FW by enhancing the relative abundance of plant growth-promoting rhizobacteria (PGPR) in the rhizosphere of watermelon. However, there are few studies on its mechanism in the pathogen resistance of watermelon. Therefore, transcriptome sequencing of T. asperellum M45a-treated watermelon roots combined with metabolome sequencing of the rhizosphere soil was performed with greenhouse pot experiments. The results demonstrated that T. asperellum M45a could stably colonize roots and significantly increase the resistance-related enzymatic activities (e.g., lignin, cinnamic acid, peroxidase and peroxidase) of watermelon. Moreover, the expression of defense-related genes such as MYB and PAL in watermelon roots significantly improved with the inoculation of T. asperellum M45a. In addition, KEGG pathway analysis showed that a large number of differentially expressed genes were significantly enriched in phenylpropane metabolic pathways, which may be related to lignin and cinnamic acid synthesis, thus further inducing the immune response to resist FON. Furthermore, metabolic analysis indicated that four differential metabolic pathways were enriched in M45a-treated soil, including six upregulated compounds and one down-regulated compound. Among them, galactinol and urea were significantly positively correlated with Trichoderma. Hence, this study provides insight into the biocontrol mechanism of T. asperellum M45a to resist soil-borne diseases, which can guide its industrial application.
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Affiliation(s)
- Yi Zhang
- Hunan Rice Research Institute, Key Laboratory of Indica Rice Genetics and Breeding in the Middle and Lower Reaches of Yangtze River Valley, Changsha, Hunan, China
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, Hunan, China
| | - Jiling Xiao
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, Hunan, China
- Institute of Agricultural Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha, Hunan, China
| | - Ke Yang
- Institute of Agricultural Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha, Hunan, China
| | - Yuqin Wang
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, Hunan, China
| | - Yun Tian
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, Hunan, China
- * E-mail: (YT); (ZL)
| | - Zhihuai Liang
- Institute of Agricultural Biotechnology Research Institute, Hunan Academy of Agricultural Sciences, Changsha, Hunan, China
- * E-mail: (YT); (ZL)
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13
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Fan D, Smith DL. Mucilaginibacter sp. K Improves Growth and Induces Salt Tolerance in Nonhost Plants via Multilevel Mechanisms. FRONTIERS IN PLANT SCIENCE 2022; 13:938697. [PMID: 35832221 PMCID: PMC9271937 DOI: 10.3389/fpls.2022.938697] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
Soil salinity negatively modulates plant growth and development, contributing to severe decreases in the growth and production of crops. Mucilaginibacter sp. K is a root endophytic bacterium that was previously reported by our laboratory to stimulate growth and confer salt tolerance in Arabidopsis (Arabidopsis thaliana). The main purpose of the present study is to elucidate the physiological and molecular machinery responsible for the prospective salt tolerance as imparted by Mucilaginibacter sp. K. We first report that auxin, gibberellin, and MPK6 signalings were required for strain K-induced growth promotion and salt tolerance in Arabidopsis. Then, this strain was assessed as a remediation strategy to improve maize performance under salinity stress. Under normal growth conditions, the seed vigor index, nitrogen content, and plant growth were significantly improved in maize. After NaCl exposure, strain K significantly promoted the growth of maize seedlings, ameliorated decline in chlorophyll content and reduced accretion of MDA and ROS compared with the control. The possible mechanisms involved in salt resistance in maize could be the improved activities of SOD and POD (antioxidative system) and SPS (sucrose biosynthesis), upregulated content of total soluble sugar and ABA, and reduced Na+ accumulation. These physiological changes were then confirmed by induced gene expression for ion transportation, photosynthesis, ABA biosynthesis, and carbon metabolism. In summary, these results suggest that strain K promotes plant growth through increases in photosynthesis and auxin- and MPK6-dependent pathways; it also bestows salt resistance on plants through protection against oxidative toxicity, Na+ imbalance, and osmotic stress, along with the activation of auxin-, gibberellin-, and MPK6-dependent signaling pathways. This is the first detailed report of maize growth promotion by a Mucilaginibacter sp. strain from wild plant. This strain could be used as a favorable biofertilizer and a salinity stress alleviator for maize, with further ascertainment as to its reliability of performance under field conditions and in the presence of salt stress.
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Affiliation(s)
- Di Fan
- School of Biology, Food and Environment, Hefei University, Hefei, China
- Department of Plant Science, McGill University, Montreal, QC, Canada
| | - Donald L. Smith
- Department of Plant Science, McGill University, Montreal, QC, Canada
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14
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Rao Y, Zeng L, Jiang H, Mei L, Wang Y. Trichoderma atroviride LZ42 releases volatile organic compounds promoting plant growth and suppressing Fusarium wilt disease in tomato seedlings. BMC Microbiol 2022; 22:88. [PMID: 35382732 PMCID: PMC8981656 DOI: 10.1186/s12866-022-02511-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Accepted: 03/30/2022] [Indexed: 11/17/2022] Open
Abstract
Background The promotion of plant growth and suppression of plant disease using beneficial microorganisms is considered an alternative to the application of chemical fertilizers or pesticides in the field. Results A coconut-scented antagonistic Trichoderma strain LZ42, previously isolated from Ganoderma lucidum-cultivated soil, was investigated for biostimulatory and biocontrol functions in tomato seedlings. Morphological and phylogenetic analyses suggested that strain LZ42 is closely related to T. atroviride. Tomato seedlings showed increased aerial and root dry weights in greenhouse trials after treatment with T. atroviride LZ42 formulated in talc, indicating the biostimulatory function of this fungus. T. atroviride LZ42 effectively suppressed Fusarium wilt disease in tomato seedlings, with an 82.69% control efficiency, which is similar to that of the carbendazim treatment. The volatile organic compounds (VOCs) emitted by T. atroviride LZ42 were found to affect the primary root growth direction and promote the root growth of tomato seedlings in root Y-tube olfactometer assays. The fungal VOCs from T. atroviride LZ42 were observed to significantly inhibit F. oxysporum in a sandwiched Petri dish assay. SPME–GC–MS analysis revealed several VOCs emitted by T. atroviride LZ42; the dominant compound was tentatively identified as 6-pentyl-2H-pyran-2-one (6-PP). The VOC 6-PP exhibited a stronger ability to influence the direction of the primary roots of tomato seedlings but not the length of the primary roots. The inhibitory effect of 6-PP on F. oxysporum was the highest among the tested pure VOCs, showing a 50% effective concentration (EC50) of 5.76 μL mL−1 headspace. Conclusions Trichoderma atroviride LZ42, which emits VOCs with multiple functions, is a promising agent for the biostimulation of vegetable plants and integrated management of Fusarium wilt disease. Supplementary Information The online version contains supplementary material available at 10.1186/s12866-022-02511-3.
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Affiliation(s)
- Yuxin Rao
- College of Forestry and Biotechnology, Zhejiang Agricultural and Forestry University, Hangzhou, 311300, China
| | - Linzhou Zeng
- College of Forestry and Biotechnology, Zhejiang Agricultural and Forestry University, Hangzhou, 311300, China
| | - Hong Jiang
- College of Forestry and Biotechnology, Zhejiang Agricultural and Forestry University, Hangzhou, 311300, China
| | - Li Mei
- State Key Laboratory of Subtropical Silviculture, Zhejiang Agricultural and Forestry University, Hangzhou, 311300, China
| | - Yongjun Wang
- College of Forestry and Biotechnology, Zhejiang Agricultural and Forestry University, Hangzhou, 311300, China.
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15
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Vicente I, Baroncelli R, Hermosa R, Monte E, Vannacci G, Sarrocco S. Role and genetic basis of specialised secondary metabolites in Trichoderma ecophysiology. FUNGAL BIOL REV 2022. [DOI: 10.1016/j.fbr.2021.12.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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16
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Contreras-Cornejo HA, Macías-Rodríguez L, Larsen J. The Role of Secondary Metabolites in Rhizosphere Competence of Trichoderma. Fungal Biol 2022. [DOI: 10.1007/978-3-030-91650-3_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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17
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de Souza RR, Moraes MP, Paraginski JA, Moreira TF, Bittencourt KC, Toebe M. Effects of Trichoderma asperellum on Germination Indexes and Seedling Parameters of Lettuce Cultivars. Curr Microbiol 2021; 79:5. [PMID: 34902081 DOI: 10.1007/s00284-021-02713-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Accepted: 10/11/2021] [Indexed: 10/19/2022]
Abstract
The aim of this study was to analyze the effects of Trichoderma asperellum on germination indexes and seedling parameters of lettuce cultivars. The trial was arranged in a completely randomized design with three cultivars (Cerbiata, Crespa Grand Rapids, and Mimosa), and two seed-treatment products (quality and organic) containing strain URM 5911 of Trichoderma asperellum plus a control group (untreated), with four repetitions. After seven days, six seedling characters were measured (shoot length, radicle length, total length, shoot diameter, radicle diameter, and seedling dry matter) and eight germination indexes were calculated (germination, first count, mean germination time, germination speed index, coefficient of velocity of germination, mean germination rate, Timson's germination index, and germination rate index). In general, regarding the germination indexes, the effect of the genotype factor predominated over the Trichoderma factor. The seedling characters showed significance for genotype × Trichoderma interaction for shoot length, shoot diameter, radicle diameter, and seedling dry matter. Such results demonstrate that the effects of Trichoderma asperellum on lettuce seedlings variate according to the cultivar used.
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Affiliation(s)
- Rafael Rodrigues de Souza
- Department of Agronomic and Environmental Sciences, Federal University of Santa Maria (UFSM), Frederico Westphalen, RS, Brazil.
| | - Mariana Poll Moraes
- Department of Agronomic and Environmental Sciences, Federal University of Santa Maria (UFSM), Frederico Westphalen, RS, Brazil
| | - João Antônio Paraginski
- Department of Agronomic and Environmental Sciences, Federal University of Santa Maria (UFSM), Frederico Westphalen, RS, Brazil
| | - Thainá Fogliatto Moreira
- Department of Agronomic and Environmental Sciences, Federal University of Santa Maria (UFSM), Frederico Westphalen, RS, Brazil
| | | | - Marcos Toebe
- Department of Agronomic and Environmental Sciences, Federal University of Santa Maria (UFSM), Frederico Westphalen, RS, Brazil
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18
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Hoang XLT, Prerostova S, Thu NBA, Thao NP, Vankova R, Tran LSP. Histidine Kinases: Diverse Functions in Plant Development and Responses to Environmental Conditions. ANNUAL REVIEW OF PLANT BIOLOGY 2021; 72:297-323. [PMID: 34143645 DOI: 10.1146/annurev-arplant-080720-093057] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The two-component system (TCS), which is one of the most evolutionarily conserved signaling pathway systems, has been known to regulate multiple biological activities and environmental responses in plants. Significant progress has been made in characterizing the biological functions of the TCS components, including signal receptor histidine kinase (HK) proteins, signal transducer histidine-containing phosphotransfer proteins, and effector response regulator proteins. In this review, our scope is focused on the diverse structure, subcellular localization, and interactions of the HK proteins, as well as their signaling functions during development and environmental responses across different plant species. Based on data collected from scientific studies, knowledge about acting mechanisms and regulatory roles of HK proteins is presented. This comprehensive summary ofthe HK-related network provides a panorama of sophisticated modulating activities of HK members and gaps in understanding these activities, as well as the basis for developing biotechnological strategies to enhance the quality of crop plants.
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Affiliation(s)
- Xuan Lan Thi Hoang
- Applied Biotechnology for Crop Development Research Unit, School of Biotechnology, International University, Ho Chi Minh City 700000, Vietnam; , ,
- Vietnam National University, Ho Chi Minh City 700000, Vietnam
| | - Sylva Prerostova
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague 6, Czech Republic; ,
| | - Nguyen Binh Anh Thu
- Applied Biotechnology for Crop Development Research Unit, School of Biotechnology, International University, Ho Chi Minh City 700000, Vietnam; , ,
- Vietnam National University, Ho Chi Minh City 700000, Vietnam
| | - Nguyen Phuong Thao
- Applied Biotechnology for Crop Development Research Unit, School of Biotechnology, International University, Ho Chi Minh City 700000, Vietnam; , ,
- Vietnam National University, Ho Chi Minh City 700000, Vietnam
| | - Radomira Vankova
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague 6, Czech Republic; ,
| | - Lam-Son Phan Tran
- Institute of Genomics for Crop Abiotic Stress Tolerance, Department of Plant and Soil Science, Texas Tech University, Lubbock, Texas 79409, USA;
- Stress Adaptation Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
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Liu Q, Tang S, Meng X, Zhu H, Zhu Y, Liu D, Shen Q. Proteomic Analysis Demonstrates a Molecular Dialog Between Trichoderma guizhouense NJAU 4742 and Cucumber ( Cucumis sativus L.) Roots: Role in Promoting Plant Growth. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2021; 34:631-644. [PMID: 33496609 DOI: 10.1094/mpmi-08-20-0240-r] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Trichoderma is a genus of filamentous fungi that play notable roles in stimulating plant growth after colonizing the root surface. However, the key proteins and molecular mechanisms governing this stimulation have not been completely elucidated. In this study, Trichoderma guizhouense NJAU 4742 was investigated in a hydroponic culture system after interacting with cucumber roots. The total proteins of the fungus were characterized, and the key metabolic pathways along with related genes were analyzed through proteomic and transcriptomic analyses. The roles played by the regulated proteins during the interaction between plants and NJAU 4742 were further examined. The intracellular or extracellular proteins from NJAU 4742 and extracellular proteins from cucumber were quantified, and the high-abundance proteins were determined which were primarily involved in the shikimate pathway (tryptophan, tyrosine, and phenylalanine metabolism, auxin biosynthesis, and secondary metabolite synthesis). Moreover, 15N-KNO3 labeling analysis indicated that NJAU 4742 had a strong ability to convert nitrogenous amino acids, nitrate, nitrile, and amines into ammonia. The auxin synthesis and ammonification metabolism pathways of NJAU 4742 significantly contributed to plant growth. The results of this study demonstrated the crucial metabolic pathways involved in the interactions between Trichoderma spp. and plants.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Qiumei Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, Peoples Republic of China
| | - Siyu Tang
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, Peoples Republic of China
| | - Xiaohui Meng
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, Peoples Republic of China
| | - Han Zhu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, Peoples Republic of China
| | - Yiyong Zhu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, Peoples Republic of China
| | - Dongyang Liu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, Peoples Republic of China
| | - Qirong Shen
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, Jiangsu, Peoples Republic of China
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20
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Morán-Diez ME, Martínez de Alba ÁE, Rubio MB, Hermosa R, Monte E. Trichoderma and the Plant Heritable Priming Responses. J Fungi (Basel) 2021; 7:jof7040318. [PMID: 33921806 PMCID: PMC8072925 DOI: 10.3390/jof7040318] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 04/15/2021] [Accepted: 04/16/2021] [Indexed: 01/08/2023] Open
Abstract
There is no doubt that Trichoderma is an inhabitant of the rhizosphere that plays an important role in how plants interact with the environment. Beyond the production of cell wall degrading enzymes and metabolites, Trichoderma spp. can protect plants by inducing faster and stronger immune responses, a mechanism known as priming, which involves enhanced accumulation of dormant cellular proteins that function in intracellular signal amplification. One example of these proteins is the mitogen-activated protein kinases (MAPK) that are triggered by the rise of cytosolic calcium levels and cellular redox changes following a stressful challenge. Transcription factors such as WRKYs, MYBs, and MYCs, play important roles in priming as they act as regulatory nodes in the transcriptional network of systemic defence after stress recognition. In terms of long-lasting priming, Trichoderma spp. may be involved in plants epigenetic regulation through histone modifications and replacements, DNA (hypo)methylation, and RNA-directed DNA methylation (RdDM). Inheritance of these epigenetic marks for enhanced resistance and growth promotion, without compromising the level of resistance of the plant’s offspring to abiotic or biotic stresses, seems to be an interesting path to be fully explored.
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Shi C, Chen J, Ge Q, Sun J, Guo W, Wang J, Peng L, Xu Q, Fan G, Zhang W, Liu X. Draft Genomes and Comparative Analysis of Seven Mangrove Rhizosphere-Associated Fungi Isolated From Kandelia obovata and Acanthus ilicifolius. FRONTIERS IN FUNGAL BIOLOGY 2021; 2:626904. [PMID: 37744136 PMCID: PMC10512393 DOI: 10.3389/ffunb.2021.626904] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 03/16/2021] [Indexed: 09/26/2023]
Abstract
Mangroves are one of the most productive and biologically diverse ecosystems, with unique plants, animals, and microorganisms adapted to the harsh coastal environments. Although fungi are widely distributed in the mangrove ecosystem and they are playing an important role in the decomposition of organic matter, their genomic profiles are still poorly understood. In this study, we isolated seven Ascomycota fungi (Westerdykella dispersa F012, Trichoderma lixii F014, Aspergillus tubingensis F023, Penicillium brefeldianum F032, Neoroussoella solani F033, Talaromyces fuscoviridis F034, and Arthrinium marii F035) from rhizospheres of two mangroves of Kandelia obovata and Acanthus ilicifolius. We sequenced and assembled the whole genome of these fungi, resulting in size ranging from 29 to 48 Mb, while contig N50 from 112 to 833 Kb. We generated six novel fungi genomes except A. tubingensis, and the gene completeness and genome completeness of all seven genomes are higher than 94%. Comparing with non-mangrove fungi, we found Carbohydrate-Binding Modules (CBM32), a subfamily of carbohydrate active enzymes, only detected in two mangrove fungi. Another two subfamilies, Glycoside Hydrolases (GH6) and Polysaccharide Lyases (PL4), were significantly different in gene copy number between K. obovata and A. ilicifolius rhizospheres (P-value 0.041 for GH6, 0.047 for PL4). These findings may indicate an important influence of mangrove environments or hosts on the ability of decomposition in rhizosphere fungi. Secondary metabolite biosynthesis gene clusters were detected and we found the mangrove fungi averagely contain 18 Type I Polyketide (t1pks) synthase, which was significantly higher than 13 in non-mangrove fungi (P-value 0.048), suggesting their potential roles in producing bioactive compounds that important for fungi development and ecology. We reported seven mangrove-associated fungal genomes in this study and compared their carbohydrate active enzymes and secondary metabolites (SM) genes with those of non-mangrove fungi, and the results suggest that there are differences in genetic information among fungi in different habitats.
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Affiliation(s)
- Chengcheng Shi
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
| | | | - Qijin Ge
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Jiahui Sun
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Wenjie Guo
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Jie Wang
- Genetic Engineering Research Center, School of Life Sciences, Chongqing University, Chongqing, China
- BGI-Argo Seed Service (Wuhan) Co., Ltd, BGI-Shenzhen, Wuhan, China
| | - Ling Peng
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Qiwu Xu
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | | | - Wenwei Zhang
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
- BGI-Shenzhen, Shenzhen, China
| | - Xin Liu
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
- BGI-Shenzhen, Shenzhen, China
- BGI-Fuyang, BGI-Shenzhen, Fuyang, China
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22
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Eichmann R, Richards L, Schäfer P. Hormones as go-betweens in plant microbiome assembly. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 105:518-541. [PMID: 33332645 PMCID: PMC8629125 DOI: 10.1111/tpj.15135] [Citation(s) in RCA: 77] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 12/10/2020] [Accepted: 12/11/2020] [Indexed: 05/04/2023]
Abstract
The interaction of plants with complex microbial communities is the result of co-evolution over millions of years and contributed to plant transition and adaptation to land. The ability of plants to be an essential part of complex and highly dynamic ecosystems is dependent on their interaction with diverse microbial communities. Plant microbiota can support, and even enable, the diverse functions of plants and are crucial in sustaining plant fitness under often rapidly changing environments. The composition and diversity of microbiota differs between plant and soil compartments. It indicates that microbial communities in these compartments are not static but are adjusted by the environment as well as inter-microbial and plant-microbe communication. Hormones take a crucial role in contributing to the assembly of plant microbiomes, and plants and microbes often employ the same hormones with completely different intentions. Here, the function of hormones as go-betweens between plants and microbes to influence the shape of plant microbial communities is discussed. The versatility of plant and microbe-derived hormones essentially contributes to the creation of habitats that are the origin of diversity and, thus, multifunctionality of plants, their microbiota and ultimately ecosystems.
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Affiliation(s)
- Ruth Eichmann
- Institute of Molecular BotanyUlm UniversityUlm89069Germany
| | - Luke Richards
- School of Life SciencesUniversity of WarwickCoventryCV4 7ALUK
| | - Patrick Schäfer
- Institute of Molecular BotanyUlm UniversityUlm89069Germany
- School of Life SciencesUniversity of WarwickCoventryCV4 7ALUK
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23
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Tseng YH, Rouina H, Groten K, Rajani P, Furch ACU, Reichelt M, Baldwin IT, Nataraja KN, Uma Shaanker R, Oelmüller R. An Endophytic Trichoderma Strain Promotes Growth of Its Hosts and Defends Against Pathogen Attack. FRONTIERS IN PLANT SCIENCE 2020; 11:573670. [PMID: 33424876 PMCID: PMC7793846 DOI: 10.3389/fpls.2020.573670] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Accepted: 11/02/2020] [Indexed: 05/30/2023]
Abstract
Plants host numerous endophytic microbes which promote plant performance, in particular under stress. A new endophytic fungus was isolated from the leaves of a deciduous wood tree Leucas aspera. Morphological inspection and multilocus phylogeny identified the fungus as a new Trichoderma strain. If applied to Arabidopsis thaliana and Nicotiana attenuata, it mainly colonizes their roots and strongly promotes initial growth of the plants on soil. The fungus grows on high NaCl or mannitol concentrations, and shows predatory capability on the pathogenic fungus Alternaria brassicicola. Colonized Arabidopsis plants tolerate higher salt stress and show lower A. brassicicola spread in roots and shoots, while arbuscular mycorrhiza formation in N. attenuata is not affected by the Trichoderma strain. These beneficial features of the novel Trichoderma strain are important prerequisites for agricultural applications.
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Affiliation(s)
- Yu-Heng Tseng
- Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University Jena, Jena, Germany
| | - Hamid Rouina
- Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University Jena, Jena, Germany
| | - Karin Groten
- Department of Molecular Ecology, Max-Planck-Institute for Chemical Ecology, Jena, Germany
| | - Pijakala Rajani
- School of Ecology and Conservation, University of Agricultural Sciences, Gandhi Krishi Vigyana Kendra (GKVK), Bengaluru, India
| | - Alexandra C. U. Furch
- Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University Jena, Jena, Germany
| | - Michael Reichelt
- Department of Molecular Ecology, Max-Planck-Institute for Chemical Ecology, Jena, Germany
| | - Ian T. Baldwin
- Department of Molecular Ecology, Max-Planck-Institute for Chemical Ecology, Jena, Germany
| | - Karaba N. Nataraja
- Department of Crop Physiology, University of Agricultural Sciences, Gandhi Krishi Vigyana Kendra (GKVK), Bengaluru, India
| | - Ramanan Uma Shaanker
- School of Ecology and Conservation, University of Agricultural Sciences, Gandhi Krishi Vigyana Kendra (GKVK), Bengaluru, India
| | - Ralf Oelmüller
- Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University Jena, Jena, Germany
- School of Ecology and Conservation, University of Agricultural Sciences, Gandhi Krishi Vigyana Kendra (GKVK), Bengaluru, India
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24
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Stasko AK, Batnini A, Bolanos-Carriel C, Lin JE, Lin Y, Blakeslee JJ, Dorrance AE. Auxin Profiling and GmPIN Expression in Phytophthora sojae-Soybean Root Interactions. PHYTOPATHOLOGY 2020; 110:1988-2002. [PMID: 32602813 DOI: 10.1094/phyto-02-20-0046-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Auxin (indole-3-acetic acid, IAA) has been implicated as a susceptibility factor in both beneficial and pathogenic molecular plant-microbe interactions. Previous studies have identified a large number of auxin-related genes underlying quantitative disease resistance loci (QDRLs) for Phytophthora sojae. Thus, we hypothesized that auxin may be involved the P. sojae-soybean interaction. The levels of IAA and related metabolites were measured in mycelia and media supernatant as well as in mock and inoculated soybean roots in a time course assay. The expression of 11 soybean Pin-formed (GmPIN) auxin efflux transporter genes was also examined. Tryptophan, an auxin precursor, was detected in the P. sojae mycelia and media supernatant. During colonization of roots, levels of IAA and related metabolites were significantly higher in both moderately resistant Conrad and moderately susceptible Sloan inoculated roots compared with mock controls at 48 h postinoculation (hpi) in one experiment and at 72 hpi in a second, with Sloan accumulating higher levels of the auxin catabolite IAA-Ala than Conrad. Additionally, one GmPIN at 24 hpi, one at 48 hpi, and three at 72 hpi had higher expression in inoculated compared with the mock control roots in Conrad. The ability of resistant cultivars to cope with auxin accumulation may play an important role in quantitative disease resistance. Levels of jasmonic acid (JA), another plant hormone associated with defense responses, were also higher in inoculated roots at these same time points, suggesting that JA also plays a role during the later stages of infection.
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Affiliation(s)
- Anna K Stasko
- Department of Plant Pathology, The Ohio State University, Wooster, OH 44691
- Center for Soybean Research, The Ohio State University, Wooster, OH 44691
| | - Amine Batnini
- Department of Plant Pathology, The Ohio State University, Wooster, OH 44691
- Center for Soybean Research, The Ohio State University, Wooster, OH 44691
| | - Carlos Bolanos-Carriel
- Department of Plant Pathology, The Ohio State University, Wooster, OH 44691
- Center for Soybean Research, The Ohio State University, Wooster, OH 44691
| | - Jinshan Ella Lin
- Department of Horticulture and Crop Science and OARDC Metabolite Analysis Cluster, The Ohio State University, Wooster, OH 44691
| | - Yun Lin
- Department of Horticulture and Crop Science and OARDC Metabolite Analysis Cluster, The Ohio State University, Wooster, OH 44691
| | - Joshua J Blakeslee
- Department of Horticulture and Crop Science and OARDC Metabolite Analysis Cluster, The Ohio State University, Wooster, OH 44691
- Center for Applied Plant Sciences, The Ohio State University, Columbus, OH 43210
| | - Anne E Dorrance
- Department of Plant Pathology, The Ohio State University, Wooster, OH 44691
- Center for Soybean Research, The Ohio State University, Wooster, OH 44691
- Center for Applied Plant Sciences, The Ohio State University, Columbus, OH 43210
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25
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García-Gómez P, Bahaji A, Gámez-Arcas S, Muñoz FJ, Sánchez-López ÁM, Almagro G, Baroja-Fernández E, Ameztoy K, De Diego N, Ugena L, Spíchal L, Doležal K, Hajirezaei MR, Romero LC, García I, Pozueta-Romero J. Volatiles from the fungal phytopathogen Penicillium aurantiogriseum modulate root metabolism and architecture through proteome resetting. PLANT, CELL & ENVIRONMENT 2020; 43:2551-2570. [PMID: 32515071 DOI: 10.1111/pce.13817] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 05/25/2020] [Accepted: 05/28/2020] [Indexed: 05/19/2023]
Abstract
Volatile compounds (VCs) emitted by the fungal phytopathogen Penicillium aurantiogriseum promote root growth and developmental changes in Arabidopsis. Here we characterised the metabolic and molecular responses of roots to fungal volatiles. Proteomic analyses revealed that these compounds reduce the levels of aquaporins, the iron carrier IRT1 and apoplastic peroxidases. Fungal VCs also increased the levels of enzymes involved in the production of mevalonate (MVA)-derived isoprenoids, nitrogen assimilation and conversion of methionine to ethylene and cyanide. Consistently, fungal VC-treated roots accumulated high levels of hydrogen peroxide (H2 O2 ), MVA-derived cytokinins, ethylene, cyanide and long-distance nitrogen transport amino acids. qRT-PCR analyses showed that many proteins differentially expressed by fungal VCs are encoded by VC non-responsive genes. Expression patterns of hormone reporters and developmental characterisation of mutants provided evidence for the involvement of cyanide scavenging and enhanced auxin, ethylene, cytokinin and H2 O2 signalling in the root architecture changes promoted by fungal VCs. Our findings show that VCs from P. aurantiogriseum modify root metabolism and architecture, and improve nutrient and water use efficiencies through transcriptionally and non-transcriptionally regulated proteome resetting mechanisms. Some of these mechanisms are subject to long-distance regulation by photosynthesis and differ from those triggered by VCs emitted by beneficial microorganisms.
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Affiliation(s)
- Pablo García-Gómez
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Abdellatif Bahaji
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Samuel Gámez-Arcas
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Francisco José Muñoz
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Ángela María Sánchez-López
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Goizeder Almagro
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Edurne Baroja-Fernández
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Kinia Ameztoy
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
| | - Nuria De Diego
- Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Lydia Ugena
- Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Lukáš Spíchal
- Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Karel Doležal
- Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Olomouc, CZ-78371, Czech Republic
| | | | - Luis C Romero
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, Sevilla, 41092, Spain
| | - Irene García
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, Sevilla, 41092, Spain
| | - Javier Pozueta-Romero
- Instituto de Agrobiotecnología (Consejo Superior de Investigaciones Científicas/Gobierno de Navarra), Mutilva, 31192, Spain
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26
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Villalobos-Escobedo JM, Esparza-Reynoso S, Pelagio-Flores R, López-Ramírez F, Ruiz-Herrera LF, López-Bucio J, Herrera-Estrella A. The fungal NADPH oxidase is an essential element for the molecular dialog between Trichoderma and Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:2178-2192. [PMID: 32578269 DOI: 10.1111/tpj.14891] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 06/10/2020] [Accepted: 06/12/2020] [Indexed: 06/11/2023]
Abstract
Members of the fungal genus Trichoderma stimulate growth and reinforce plant immunity. Nevertheless, how fungal signaling elements mediate the establishment of a successful Trichoderma-plant interaction is largely unknown. In this work, we analyzed growth, root architecture and defense in an Arabidopsis-Trichoderma co-cultivation system, including the wild-type (WT) strain of the fungus and mutants affected in NADPH oxidase. Global gene expression profiles were assessed in both the plant and the fungus during the establishment of the interaction. Trichoderma atroviride WT improved root branching and growth of seedling as previously reported. This effect diminished in co-cultivation with the ∆nox1, ∆nox2 and ∆noxR null mutants. The data gathered of the Arabidopsis interaction with the ∆noxR strain showed that the seedlings had a heightened immune response linked to jasmonic acid in roots and shoots. In the fungus, we observed repression of genes involved in complex carbohydrate degradation in the presence of the plant before contact. However, in the absence of NoxR, such repression was lost, apparently due to a poor ability to adequately utilize simple carbon sources such as sucrose, a typical plant exudate. Our results unveiled the critical role played by the Trichoderma NoxR in the establishment of a fine-tuned communication between the plant and the fungus even before physical contact. In this dialog, the fungus appears to respond to the plant by adjusting its metabolism, while in the plant, fungal perception determines a delicate growth-defense balance.
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Affiliation(s)
- José M Villalobos-Escobedo
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPN, Km. 9.6 libramiento Norte Carretera Irapuato-León, Irapuato, C. P. 36824, México
| | - Saraí Esparza-Reynoso
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, C. P. 58030, México
| | - Ramón Pelagio-Flores
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPN, Km. 9.6 libramiento Norte Carretera Irapuato-León, Irapuato, C. P. 36824, México
- Facultad de Químico Farmacobiología, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, C. P. 58240, México
| | - Fabiola López-Ramírez
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPN, Km. 9.6 libramiento Norte Carretera Irapuato-León, Irapuato, C. P. 36824, México
| | - León F Ruiz-Herrera
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, C. P. 58030, México
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, Morelia, C. P. 58030, México
| | - Alfredo Herrera-Estrella
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPN, Km. 9.6 libramiento Norte Carretera Irapuato-León, Irapuato, C. P. 36824, México
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27
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Macías-Rodríguez L, Contreras-Cornejo HA, Adame-Garnica SG, Del-Val E, Larsen J. The interactions of Trichoderma at multiple trophic levels: inter-kingdom communication. Microbiol Res 2020; 240:126552. [PMID: 32659716 DOI: 10.1016/j.micres.2020.126552] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 05/29/2020] [Accepted: 07/03/2020] [Indexed: 02/07/2023]
Abstract
Trichoderma spp. are universal saprotrophic fungi in terrestrial ecosystems, and as rhizosphere inhabitants, they mediate interactions with other soil microorganisms, plants, and arthropods at multiple trophic levels. In the rhizosphere, Trichoderma can reduce the abundance of phytopathogenic microorganisms, which involves the action of potent inhibitory molecules, such as gliovirin and siderophores, whereas endophytic associations between Trichoderma and the seeds and roots of host plants can result in enhanced plant growth and crop productivity, as well as the alleviation of abiotic stress. Such beneficial effects are mediated via the activation of endogenous mechanisms controlled by phytohormones such as auxins and abscisic acid, as well as by alterations in host plant metabolism. During either root colonization or in the absence of physical contact, Trichoderma can trigger early defense responses mediated by Ca2+ and reactive oxygen species, and subsequently stimulate plant immunity by enhancing resistance mechanisms regulated by the phytohormones salicylic acid, jasmonic acid, and ethylene. In addition, Trichoderma release volatile organic compounds and nitrogen or oxygen heterocyclic compounds that serve as signaling molecules, which have effects on plant growth, phytopathogen levels, herbivorous insects, and at the third trophic level, play roles in attracting the natural enemies (predators and parasitoids) of herbivores. In this paper, we review some of the most recent advances in our understanding of the environmental influences of Trichoderma spp., with particular emphasis on their multiple interactions at different trophic levels.
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Affiliation(s)
- Lourdes Macías-Rodríguez
- Instituto De Investigaciones Químico Biológicas, Universidad Michoacana De San Nicolás De Hidalgo, Gral. Francisco J. Mujica S/N, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, Mexico.
| | - Hexon Angel Contreras-Cornejo
- Instituto De Investigaciones Químico Biológicas, Universidad Michoacana De San Nicolás De Hidalgo, Gral. Francisco J. Mujica S/N, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, Mexico; Instituto De Investigaciones En Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma De México, Antigua Carretera a Pátzcuaro # 8701, Ex-Hacienda De San José De La Huerta, C.P. 58190, Morelia, Michoacán, MeXico.
| | - Sandra Goretti Adame-Garnica
- Instituto De Investigaciones Químico Biológicas, Universidad Michoacana De San Nicolás De Hidalgo, Gral. Francisco J. Mujica S/N, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, Mexico
| | - Ek Del-Val
- Instituto De Investigaciones En Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma De México, Antigua Carretera a Pátzcuaro # 8701, Ex-Hacienda De San José De La Huerta, C.P. 58190, Morelia, Michoacán, MeXico
| | - John Larsen
- Instituto De Investigaciones En Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma De México, Antigua Carretera a Pátzcuaro # 8701, Ex-Hacienda De San José De La Huerta, C.P. 58190, Morelia, Michoacán, MeXico
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28
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Guo K, Sui Y, Li Z, Huang Y, Zhang H, Wang W. Colonization of Trichoderma viride Tv-1511 in peppermint (Mentha × piperita L.) roots promotes essential oil production by triggering ROS-mediated MAPK activation. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 151:705-718. [PMID: 32353676 DOI: 10.1016/j.plaphy.2020.03.042] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Revised: 03/26/2020] [Accepted: 03/28/2020] [Indexed: 06/11/2023]
Abstract
Peppermint (Mentha × piperita L.) is a flavoring additive used worldwide, and Trichoderma species are beneficial fungi that can stimulate growth and disease resistance of these plants. Here the growth conditions and metabolic processes of essential oil (EO) biosynthesis in response to inoculation with Trichoderma viride Tv-1511 were investigated. The results showed that T. viride Tv-1511 was able to colonize roots of peppermint to promote its growth and photosynthetic activity and induce higher levels of glandular trichomes and elevated EO yield and composition. GC-MS analysis showed that T. viride Tv-1511-inoculated peppermint produced higher concentrations of menthone, menthol, and pulegone and lower concentrations of menthofuran than un-inoculated seedlings, and qRT-PCR showed that T. viride Tv-1511 inoculation induced upregulation of Pr (pulegone reductase encoding gene) and Mr (menthone reductase encoding gene), whereas it led to the downregulation of Mfs (menthofuran synthase encoding gene). Furthermore, a mitogen-activated protein kinase (MAPK) in peppermint, which was determined to be an analog of Arabidopsis MPK6 protein, was found to be responsible for the modulation of EO metabolism at the transcriptional level and for enzymatic activation in the T. viride Tv-1511-inoculated peppermint. Notably, NADPH oxidase-dependent reactive oxygen species (ROS) production played vital roles in the root colonization of T. viride Tv-1511 and was also involved in the induction of MAPK activation. These data showed the beneficial effects of T. viride Tv-1511 on the seedling growth and EO yield of peppermint, and they elucidated that T. viride Tv-1511 improved the quantity and quality of EOs by regulating the genes that encode the enzymes involved in EO metabolism through a potential MAPK-mediated signaling pathways.
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Affiliation(s)
- Kai Guo
- Biology Institute, Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250014, China
| | - Yonghui Sui
- Biology Institute, Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250014, China
| | - Zhe Li
- Biology Institute, Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250014, China.
| | - Yanhua Huang
- Biology Institute, Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250014, China
| | - Hao Zhang
- Biology Institute, Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250014, China
| | - Wenwen Wang
- Agilent Technologies (China) Co., Ltd, Beijing, 100102, China
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Sun X, Wang N, Li P, Jiang Z, Liu X, Wang M, Su Z, Zhang C, Lin F, Liang Y. Endophytic fungus Falciphora oryzae promotes lateral root growth by producing indole derivatives after sensing plant signals. PLANT, CELL & ENVIRONMENT 2020; 43:358-373. [PMID: 31675439 DOI: 10.1111/pce.13667] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Revised: 10/09/2019] [Accepted: 10/13/2019] [Indexed: 06/10/2023]
Abstract
The endophytic fungus Falciphora oryzae was initially isolated from wild rice (Oryza granulata) and colonizes many crop species and promotes plant growth. However, the molecular mechanisms underlying F. oryzae-mediated growth promotion are still unknown. We found that F. oryzae was able to colonize Arabidopsis thaliana. The most dramatic change after F. oryzae inoculation was observed in the root architecture, as evidenced by increased lateral root growth but reduced primary root length, similar to the effect of auxin, a significant plant growth hormone. The expression of genes responsible for auxin biosynthesis, transport, and signalling was regulated in Arabidopsis roots after F. oryzae cocultivation. Indole derivatives were detected at significantly higher levels in liquid media after cocultivation compared with separate cultivation of Arabidopsis and F. oryzae. Consistently, the expression of indole biosynthetic genes was highly upregulated in F. oryzae upon treatment with Arabidopsis exudates. Global analysis of Arabidopsis gene expression at the early stage after F. oryzae cocultivation suggested that signals were exchanged to initiate Arabidopsis-F. oryzae interactions. All these results suggest that signalling molecules from Arabidopsis roots are perceived by F. oryzae and induce the biosynthesis of indole derivatives in F. oryzae, consequently stimulating Arabidopsis lateral root growth.
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Affiliation(s)
- Xun Sun
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Ning Wang
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Ping Li
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Zhiyan Jiang
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Xiaoyu Liu
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Pesticide and Environmental Toxicology, Zhejiang University, Hangzhou, 310058, China
| | - Mengcen Wang
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Pesticide and Environmental Toxicology, Zhejiang University, Hangzhou, 310058, China
| | - Zhenzhu Su
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Chulong Zhang
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Fucheng Lin
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Yan Liang
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
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Rashad YM, Abdel-Azeem AM. Recent Progress on Trichoderma Secondary Metabolites. Fungal Biol 2020. [DOI: 10.1007/978-3-030-41870-0_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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López-Bucio JS, Salmerón-Barrera GJ, Ravelo-Ortega G, Raya-González J, León P, de la Cruz HR, Campos-García J, López-Bucio J, Guevara-García ÁA. Mitogen-activated protein kinase 6 integrates phosphate and iron responses for indeterminate root growth in Arabidopsis thaliana. PLANTA 2019; 250:1177-1189. [PMID: 31190117 DOI: 10.1007/s00425-019-03212-4] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 06/06/2019] [Indexed: 05/21/2023]
Abstract
A MAPK module, of which MPK6 kinase is an important component, is involved in the coordination of the responses to Pi and Fe in the primary root meristem of Arabidopsis thaliana. Phosphate (Pi) deficiency induces determinate primary root growth in Arabidopsis through cessation of cell division in the meristem, which is linked to an increased iron (Fe) accumulation. Here, we show that Mitogen-Activated Protein Kinase6 (MPK6) has a role in Arabidopsis primary root growth under low Pi stress. MPK6 activity is induced in roots in response to low Pi, and such induction is enhanced by Fe supplementation, suggesting an MPK6 role in coordinating Pi/Fe balance in mediating root growth. The differentiation of the root meristem induced by low Pi levels correlates with altered expression of auxin-inducible genes and auxin transporter levels via MPK6. Our results indicate a critical role of the MPK6 kinase in coordinating meristem cell activity to Pi and Fe availability for proper primary root growth.
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Affiliation(s)
- Jesús Salvador López-Bucio
- CONACYT-Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030, Morelia, Michoacán, Mexico.
| | | | - Gustavo Ravelo-Ortega
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030, Morelia, Michoacán, Mexico
| | - Javier Raya-González
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030, Morelia, Michoacán, Mexico
| | - Patricia León
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, CP 62250, Cuernavaca, Morelos, Mexico
| | - Homero Reyes de la Cruz
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030, Morelia, Michoacán, Mexico
| | - Jesús Campos-García
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030, Morelia, Michoacán, Mexico
| | - José López-Bucio
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, CP 58030, Morelia, Michoacán, Mexico
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Herbert RA, Eng T, Martinez U, Wang B, Langley S, Wan K, Pidatala V, Hoffman E, Chen JC, Bissell MJ, Brown JB, Mukhopadhyay A, Mortimer JC. Rhizobacteria Mediate the Phytotoxicity of a Range of Biorefinery-Relevant Compounds. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2019; 38:1911-1922. [PMID: 31107972 PMCID: PMC6711798 DOI: 10.1002/etc.4501] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Revised: 04/10/2019] [Accepted: 05/15/2019] [Indexed: 05/08/2023]
Abstract
Advances in engineering biology have expanded the list of renewable compounds that can be produced at scale via biological routes from plant biomass. In most cases, these chemical products have not been evaluated for effects on biological systems, defined in the present study as bioactivity, that may be relevant to their manufacture. For sustainable chemical and fuel production, the industry needs to transition from fossil to renewable carbon sources, resulting in unprecedented expansion in the production and environmental distribution of chemicals used in biomanufacturing. Further, although some chemicals have been assessed for mammalian toxicity, environmental and agricultural hazards are largely unknown. We assessed 6 compounds that are representative of the emerging biofuel and bioproduct manufacturing process for their effect on model plants (Arabidopsis thaliana, Sorghum bicolor) and show that several alter plant seedling physiology at submillimolar concentrations. However, these responses change in the presence of individual bacterial species from the A. thaliana root microbiome. We identified 2 individual microbes that change the effect of chemical treatment on root architecture and a pooled microbial community with different effects relative to its constituents individually. The present study indicates that screening industrial chemicals for bioactivity on model organisms in the presence of their microbiomes is important for biologically and ecologically relevant risk analyses. Environ Toxicol Chem 2019;38:1911-1922. © 2019 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals, Inc. on behalf of SETAC.
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Affiliation(s)
- Robin A. Herbert
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
- Joint BioEnergy Institute, EmeryvilleCaliforniaUSA
| | - Thomas Eng
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
- Joint BioEnergy Institute, EmeryvilleCaliforniaUSA
| | - Uriel Martinez
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
- College of Science and EngineeringSan Francisco State University, San FranciscoCaliforniaUSA
| | - Brenda Wang
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
| | - Sasha Langley
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
| | - Kenneth Wan
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
| | - Venkataramana Pidatala
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
- Joint BioEnergy Institute, EmeryvilleCaliforniaUSA
| | - Elijah Hoffman
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
| | - Joseph C. Chen
- College of Science and EngineeringSan Francisco State University, San FranciscoCaliforniaUSA
| | - Mina J. Bissell
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
| | - James B. Brown
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
- Environmental Genomics and System Biology DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
| | - Aindrila Mukhopadhyay
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
- Joint BioEnergy Institute, EmeryvilleCaliforniaUSA
- Environmental Genomics and System Biology DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
| | - Jenny C. Mortimer
- Biological Systems and Engineering DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
- Joint BioEnergy Institute, EmeryvilleCaliforniaUSA
- Environmental Genomics and System Biology DivisionBiosciences Area, Lawrence Berkeley National Laboratory, BerkeleyCaliforniaUSA
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Ji S, Liu Z, Liu B, Wang Y. Comparative analysis of biocontrol agent Trichoderma asperellum ACCC30536 transcriptome during its interaction with Populus davidiana × P. alba var. pyramidalis. Microbiol Res 2019; 227:126294. [PMID: 31421718 DOI: 10.1016/j.micres.2019.126294] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 06/13/2019] [Accepted: 06/18/2019] [Indexed: 12/11/2022]
Abstract
After exposure to with Populus davidiana × P. alba var. pyramidalis, the expression of genes in Trichoderma asperellum were compared in four transcriptomes. The top 20 high expression genes included six heat shock proteins and three hydrophobins, indicating that Trichoderma can rapidly adapt to environment stresses and elicit a plant defense response. The genes, involved in the interaction between Trichoderma and plant, showed an increasing expression level, for example sugar transporters, EPL1s, endoxylanases, pectin lyases, and nitrilases. Interestingly, sugar transporters also showed high expression when T. asperellum was cultured on medium lacking a carbon substrate, which would contribute to T. asperellum's survival and domination in ecological niche competition. And the genes related to mycoparasitism were expressed abundantly following T. asperellum's interaction with PdPap, indicating the PdPap induction could enhance the mycoparasitic ability of T. asperellum. Twelve chitinases and five glucanases showed higher expression in transcriptome Cs, indicating that T. asperellum secretes both types of enzyme before interacting with pathogens, allowing T. asperellum to implement mycoparasitism and obtain more energy. Many novel transcripts were obtained in each transcriptome, which may play important roles in the biocontrol process of T. asperellum. Interestingly, T. asperellum undergo constitutive alternative splicing in the biocontrol process: Seven biocontrol genes were alternative spliced via intron retention. qRT-PCR analysis proved that intron retention is negatively associated with the expression of chitinase, oligopeptide transporters, and beta-lactamase. However, the percentage of MAPK intron retention was quite low, suggesting that intron retention has little effect on the function of MAPK.
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Affiliation(s)
- Shida Ji
- Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
| | - Zhihua Liu
- State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), 26 Hexing Road, 150040, Harbin, China
| | - Bin Liu
- State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), 26 Hexing Road, 150040, Harbin, China
| | - Yucheng Wang
- Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), 26 Hexing Road, 150040, Harbin, China.
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Ortiz-Castro R, López-Bucio J. Review: Phytostimulation and root architectural responses to quorum-sensing signals and related molecules from rhizobacteria. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 284:135-142. [PMID: 31084866 DOI: 10.1016/j.plantsci.2019.04.010] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Revised: 03/29/2019] [Accepted: 04/11/2019] [Indexed: 05/05/2023]
Abstract
Bacteria rely on chemical communication to sense the environment and to retrieve information on their population densities. Accordingly, a vast repertoire of molecules is released, which synchronizes expression of genes, coordinates behavior through a process termed quorum-sensing (QS), and determines the relationships with eukaryotic species. Already identified QS molecules from Gram negative bacteria can be grouped into two main classes, N-acyl-L-homoserine lactones (AHLs) and cyclodipeptides (CDPs), with roles in biofilm formation, bacterial virulence or symbiotic interactions. Noteworthy, plants detect each of these molecules, change their own gene expression programs, re-configurate root architecture, and activate defense responses, improving in this manner their adaptation to natural and agricultural ecosystems. AHLs may act as alarm signals, pathogen and/or microbe-associated molecular patterns, whereas CDPs function as hormonal mimics for plants via their putative interactions with the auxin receptor Transport Inhibitor Response1 (TIR1). A major challenge is to identify the molecular pathways of QS-mediated crosstalk and the plant receptors and interacting proteins for AHLs, CDPs and related signals.
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Affiliation(s)
- Randy Ortiz-Castro
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Carretera Antigua a Coatepec 351, El Haya, C. P. 91070 Xalapa, Veracruz, Mexico
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico.
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35
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Pu Y, Walley JW, Shen Z, Lang MG, Briggs SP, Estelle M, Kelley DR. Quantitative Early Auxin Root Proteomics Identifies GAUT10, a Galacturonosyltransferase, as a Novel Regulator of Root Meristem Maintenance. Mol Cell Proteomics 2019; 18:1157-1170. [PMID: 30918009 PMCID: PMC6553934 DOI: 10.1074/mcp.ra119.001378] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Indexed: 11/25/2022] Open
Abstract
Auxin induces rapid gene expression changes throughout root development. How auxin-induced transcriptional responses relate to changes in protein abundance is not well characterized. This report identifies early auxin responsive proteins in roots at 30 min and 2 h after hormone treatment using a quantitative proteomics approach in which 3,514 proteins were reliably quantified. A comparison of the >100 differentially expressed proteins at each the time point showed limited overlap, suggesting a dynamic and transient response to exogenous auxin. Several proteins with established roles in auxin-mediated root development exhibited altered abundance, providing support for this approach. While novel targeted proteomics assays demonstrate that all six auxin receptors remain stable in response to hormone. Additionally, 15 of the top responsive proteins display root and/or auxin response phenotypes, demonstrating the validity of these differentially expressed proteins. Auxin signaling in roots dictates proteome reprogramming of proteins enriched for several gene ontology terms, including transcription, translation, protein localization, thigmatropism, and cell wall modification. In addition, we identified auxin-regulated proteins that had not previously been implicated in auxin response. For example, genetic studies of the auxin responsive protein galacturonosyltransferase 10 demonstrate that this enzyme plays a key role in root development. Altogether these data complement and extend our understanding of auxin response beyond that provided by transcriptome studies and can be used to uncover novel proteins that may mediate root developmental programs.
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Affiliation(s)
- Yunting Pu
- From the Departments of ‡Genetics, Development and Cell Biology
| | - Justin W Walley
- ¶Plant Pathology and Microbiology, Iowa State University, Ames, IA
| | - Zhouxin Shen
- §Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA
| | - Michelle G Lang
- From the Departments of ‡Genetics, Development and Cell Biology
| | - Steven P Briggs
- §Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA
| | - Mark Estelle
- §Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA
| | - Dior R Kelley
- From the Departments of ‡Genetics, Development and Cell Biology,
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Ramírez-Valdespino CA, Casas-Flores S, Olmedo-Monfil V. Trichoderma as a Model to Study Effector-Like Molecules. Front Microbiol 2019; 10:1030. [PMID: 31156578 PMCID: PMC6529561 DOI: 10.3389/fmicb.2019.01030] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 04/24/2019] [Indexed: 11/24/2022] Open
Abstract
Plants are capable of perceiving microorganisms by coordinating processes to establish different forms of plant–microbe relationships. Plant colonization is governed in fungal and bacterial systems by secreted effector molecules, suppressing plant defense responses and modulating plant physiology to promote either virulence or compatibility. Proteins, secondary metabolites, and small RNAs have been described as effector molecules that use different mechanisms to establish the interaction. Effector molecules have been studied in more detail due to their involvement in harmful interactions, leading to a negative impact on agriculture. Recently, research groups have started to study the effectors in symbiotic interactions. Interestingly, most symbiotic effectors are members of the same families present in phytopathogens. Nevertheless, the quantity and ratio of secreted effectors depends on the microorganism and the host, suggesting a complex mechanism of recognition between the plant and their associated microorganisms. Fungi belonging to Trichoderma genus interact with plants by inducing their defense system and promoting plant growth. Research suggests that some of these effects are associated with effector molecules that Trichoderma delivers during the association with the plant. In this review, we will focus on the main findings concerning the effector molecules reported in Trichoderma spp. and their role during the interaction with plants, mainly in the molecular dialogue that takes place between them.
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Affiliation(s)
- Claudia A Ramírez-Valdespino
- División de Ciencias Naturales y Exactas, Departamento de Biología, Universidad de Guanajuato, Guanajuato, Mexico.,Laboratorio de Biohidrometalurgia, Departamento de Medio Ambiente y Energía, Centro de Investigación en Materiales Avanzados, Chihuahua, Mexico
| | - Sergio Casas-Flores
- Laboratorio de Genómica Funcional y Comparativa, División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, Mexico
| | - Vianey Olmedo-Monfil
- División de Ciencias Naturales y Exactas, Departamento de Biología, Universidad de Guanajuato, Guanajuato, Mexico
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Romera FJ, García MJ, Lucena C, Martínez-Medina A, Aparicio MA, Ramos J, Alcántara E, Angulo M, Pérez-Vicente R. Induced Systemic Resistance (ISR) and Fe Deficiency Responses in Dicot Plants. FRONTIERS IN PLANT SCIENCE 2019; 10:287. [PMID: 30915094 PMCID: PMC6421314 DOI: 10.3389/fpls.2019.00287] [Citation(s) in RCA: 98] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 02/21/2019] [Indexed: 05/03/2023]
Abstract
Plants develop responses to abiotic stresses, like Fe deficiency. Similarly, plants also develop responses to cope with biotic stresses provoked by biological agents, like pathogens and insects. Some of these responses are limited to the infested damaged organ, but other responses systemically spread far from the infested organ and affect the whole plant. These latter responses include the Systemic Acquired Resistance (SAR) and the Induced Systemic Resistance (ISR). SAR is induced by pathogens and insects while ISR is mediated by beneficial microbes living in the rhizosphere, like bacteria and fungi. These root-associated mutualistic microbes, besides impacting on plant nutrition and growth, can further boost plant defenses, rendering the entire plant more resistant to pathogens and pests. In the last years, it has been found that ISR-eliciting microbes can induce both physiological and morphological responses to Fe deficiency in dicot plants. These results suggest that the regulation of both ISR and Fe deficiency responses overlap, at least partially. Indeed, several hormones and signaling molecules, like ethylene (ET), auxin, and nitric oxide (NO), and the transcription factor MYB72, emerged as key regulators of both processes. This convergence between ISR and Fe deficiency responses opens the way to the use of ISR-eliciting microbes as Fe biofertilizers as well as biopesticides. This review summarizes the progress in the understanding of the molecular overlap in the regulation of ISR and Fe deficiency responses in dicot plants. Root-associated mutualistic microbes, rhizobacteria and rhizofungi species, known for their ability to induce morphological and/or physiological responses to Fe deficiency in dicot plant species are also reviewed herein.
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Affiliation(s)
- Francisco J. Romera
- Department of Agronomy, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
| | - María J. García
- Department of Botany, Ecology and Plant Physiology, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
| | - Carlos Lucena
- Department of Botany, Ecology and Plant Physiology, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
| | - Ainhoa Martínez-Medina
- Molecular Interaction Ecology, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Miguel A. Aparicio
- Department of Microbiology, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
| | - José Ramos
- Department of Microbiology, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
| | - Esteban Alcántara
- Department of Agronomy, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
| | - Macarena Angulo
- Department of Agronomy, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
| | - Rafael Pérez-Vicente
- Department of Botany, Ecology and Plant Physiology, Campus de Excelencia Internacional Agroalimentario CeiA3, Universidad de Córdoba, Córdoba, Spain
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Singh BN, Dwivedi P, Sarma BK, Singh GS, Singh HB. A novel function of N-signaling in plants with special reference to Trichoderma interaction influencing plant growth, nitrogen use efficiency, and cross talk with plant hormones. 3 Biotech 2019; 9:109. [PMID: 30863693 DOI: 10.1007/s13205-019-1638-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 02/16/2019] [Indexed: 10/27/2022] Open
Abstract
Trichoderma spp. is considered as a plant growth promoter and biocontrol fungal agents. They colonize on the surface of root in most of the agriculture crops. They secrete different secondary metabolites and enzymes which promote different physiological processes as well as protect plants from various environmental stresses. This is part of their vital functions. They are widely exploited as a biocontrol agent and plant growth promoter in agricultural fields. Colonization of Trichoderma with roots can enhance nutrient acquisition from surrounding soil to root and can substantially increase nitrogen use efficiency (NUE) in crops and linked with activation of plant signaling cascade. Among Trichoderma species, only some Trichoderma species were well characterized which help in the uptake of nitrogen-containing compound (especially nitrate form) and induced nitric oxide (NO) in plants. Both nitrate and NO are known as a signaling agent, involved in plant growth and development and disease resistance. Activation of these signaling molecules may crosstalk with other signaling molecule (Ca2+) and phytohormone (auxin, gibberellins, cytokinin and ethylene). This ability of Trichoderma is important to agriculture not only for increased plant growth but also to control plant diseases. Recently, Trichoderma strains have been shown to encompass the ability to regulate transcripts level of high-affinity nitrate transporters and probably it was positively regulated by NO. This review aims to focus the usage of Trichoderma strains on crops by their abilities to regulate transcript levels, probably through activation of plant N signaling transduction that improve plant health.
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Savita, Sharma A. Fungi as Biological Control Agents. BIOFERTILIZERS FOR SUSTAINABLE AGRICULTURE AND ENVIRONMENT 2019. [DOI: 10.1007/978-3-030-18933-4_18] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Ramírez-Valdespino CA, Casas-Flores S, Olmedo-Monfil V. Trichoderma as a Model to Study Effector-Like Molecules. Front Microbiol 2019. [PMID: 31156578 DOI: 10.3389/pmic.2019.01030] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2023] Open
Abstract
Plants are capable of perceiving microorganisms by coordinating processes to establish different forms of plant-microbe relationships. Plant colonization is governed in fungal and bacterial systems by secreted effector molecules, suppressing plant defense responses and modulating plant physiology to promote either virulence or compatibility. Proteins, secondary metabolites, and small RNAs have been described as effector molecules that use different mechanisms to establish the interaction. Effector molecules have been studied in more detail due to their involvement in harmful interactions, leading to a negative impact on agriculture. Recently, research groups have started to study the effectors in symbiotic interactions. Interestingly, most symbiotic effectors are members of the same families present in phytopathogens. Nevertheless, the quantity and ratio of secreted effectors depends on the microorganism and the host, suggesting a complex mechanism of recognition between the plant and their associated microorganisms. Fungi belonging to Trichoderma genus interact with plants by inducing their defense system and promoting plant growth. Research suggests that some of these effects are associated with effector molecules that Trichoderma delivers during the association with the plant. In this review, we will focus on the main findings concerning the effector molecules reported in Trichoderma spp. and their role during the interaction with plants, mainly in the molecular dialogue that takes place between them.
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Affiliation(s)
- Claudia A Ramírez-Valdespino
- División de Ciencias Naturales y Exactas, Departamento de Biología, Universidad de Guanajuato, Guanajuato, Mexico
- Laboratorio de Biohidrometalurgia, Departamento de Medio Ambiente y Energía, Centro de Investigación en Materiales Avanzados, Chihuahua, Mexico
| | - Sergio Casas-Flores
- Laboratorio de Genómica Funcional y Comparativa, División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, San Luis Potosí, Mexico
| | - Vianey Olmedo-Monfil
- División de Ciencias Naturales y Exactas, Departamento de Biología, Universidad de Guanajuato, Guanajuato, Mexico
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Sharma S, Kour D, Rana KL, Dhiman A, Thakur S, Thakur P, Thakur S, Thakur N, Sudheer S, Yadav N, Yadav AN, Rastegari AA, Singh K. Trichoderma: Biodiversity, Ecological Significances, and Industrial Applications. RECENT ADVANCEMENT IN WHITE BIOTECHNOLOGY THROUGH FUNGI 2019. [DOI: 10.1007/978-3-030-10480-1_3] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Martínez-Padrón HY, Torres-Castillo JA, Rodríguez-Herrera R, López-Santillán JA, Estrada-Drouaillet B, Osorio-Hernández E. Identification and evaluation of secondary metabolites by gas chromatography-mass spectrometry (GC-MS) in native strains of Trichoderma species. ACTA ACUST UNITED AC 2018. [DOI: 10.5897/ajb2018.16546] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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Manganiello G, Sacco A, Ercolano MR, Vinale F, Lanzuise S, Pascale A, Napolitano M, Lombardi N, Lorito M, Woo SL. Modulation of Tomato Response to Rhizoctonia solani by Trichoderma harzianum and Its Secondary Metabolite Harzianic Acid. Front Microbiol 2018; 9:1966. [PMID: 30233507 PMCID: PMC6127634 DOI: 10.3389/fmicb.2018.01966] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Accepted: 08/02/2018] [Indexed: 01/25/2023] Open
Abstract
The present study investigated the transcriptomic and metabolomic changes elicited in tomato plants (Solanum lycopersicum cv. Micro-Tom) following treatments with the biocontrol agent Trichoderma harzianum strain M10 or its purified secondary metabolite harzianic acid (HA), in the presence or the absence of the soil-borne pathogen Rhizoctonia solani. Transcriptomic analysis allowed the identification of differentially expressed genes (DEGs) that play a pivotal role in resistance to biotic stress. Overall, the results support the ability of T. harzianum M10 to activate defense responses in infected tomato plants. An induction of hormone-mediated signaling was observed, as shown by the up-regulation of genes involved in the ethylene and jasmonate (ET/JA) and salicylic acid (SA)-mediated signaling pathways. Further, the protective action of T. harzianum on the host was revealed by the over-expression of genes able to detoxify cells from reactive oxygen species (ROS). On the other hand, HA treatment also stimulated tomato response to the pathogen by inducing the expression of several genes involved in defense response (including protease inhibitors, resistance proteins like CC-NBS-LRR) and hormone interplay. The accumulation of steroidal glycoalkaloids in the plant after treatments with either T. harzianum or HA, as determined by metabolomic analysis, confirmed the complexity of the plant response to beneficial microbes, demonstrating that these microorganisms are also capable of activating the chemical defenses.
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Affiliation(s)
- Gelsomina Manganiello
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Adriana Sacco
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Maria R. Ercolano
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Francesco Vinale
- National Research Council, Institute for Sustainable Plant Protection, Portici, Italy
| | - Stefania Lanzuise
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Alberto Pascale
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Mauro Napolitano
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Nadia Lombardi
- National Research Council, Institute for Sustainable Plant Protection, Portici, Italy
| | - Matteo Lorito
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
- National Research Council, Institute for Sustainable Plant Protection, Portici, Italy
- Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy
| | - Sheridan L. Woo
- National Research Council, Institute for Sustainable Plant Protection, Portici, Italy
- Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy
- Department of Pharmacy, University of Naples Federico II, Naples, Italy
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López-Bucio JS, Raya-González J, Ravelo-Ortega G, Ruiz-Herrera LF, Ramos-Vega M, León P, López-Bucio J, Guevara-García ÁA. Mitogen activated protein kinase 6 and MAP kinase phosphatase 1 are involved in the response of Arabidopsis roots to L-glutamate. PLANT MOLECULAR BIOLOGY 2018; 96:339-351. [PMID: 29344832 DOI: 10.1007/s11103-018-0699-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Accepted: 01/08/2018] [Indexed: 06/07/2023]
Abstract
The function and components of L-glutamate signaling pathways in plants have just begun to be elucidated. Here, using a combination of genetic and biochemical strategies, we demonstrated that a MAPK module is involved in the control of root developmental responses to this amino acid. Root system architecture plays an essential role in plant adaptation to biotic and abiotic factors via adjusting signal transduction and gene expression. L-Glutamate (L-Glu), an amino acid with neurotransmitter functions in animals, inhibits root growth, but the underlying genetic mechanisms are poorly understood. Through a combination of genetic analysis, in-gel kinase assays, detailed cell elongation and division measurements and confocal analysis of expression of auxin, quiescent center and stem cell niche related genes, the critical roles of L-Glu in primary root growth acting through the mitogen-activated protein kinase 6 (MPK6) and the dual specificity serine-threonine-tyrosine phosphatase MKP1 could be revealed. In-gel phosphorylation assays revealed a rapid and dose-dependent induction of MPK6 and MPK3 activities in wild-type Arabidopsis seedlings in response to L-Glu. Mutations in MPK6 or MKP1 reduced or increased root cell division and elongation in response to L-Glu, possibly modulating auxin transport and/or response, but in a PLETHORA1 and 2 independent manner. Our data highlight MPK6 and MKP1 as components of an L-Glu pathway linking the auxin response, and cell division for primary root growth.
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Affiliation(s)
- Jesús Salvador López-Bucio
- CONACYT-Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico
| | - Javier Raya-González
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico
| | - Gustavo Ravelo-Ortega
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico
| | - León Francisco Ruiz-Herrera
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico
| | - Maricela Ramos-Vega
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, 62250, Cuernavaca, Morelos, Mexico
| | - Patricia León
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, 62250, Cuernavaca, Morelos, Mexico
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B3, Ciudad Universitaria, C. P. 58030, Morelia, Michoacán, Mexico.
| | - Ángel Arturo Guevara-García
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, 62250, Cuernavaca, Morelos, Mexico.
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Jagodzik P, Tajdel-Zielinska M, Ciesla A, Marczak M, Ludwikow A. Mitogen-Activated Protein Kinase Cascades in Plant Hormone Signaling. FRONTIERS IN PLANT SCIENCE 2018; 9:1387. [PMID: 30349547 PMCID: PMC6187979 DOI: 10.3389/fpls.2018.01387] [Citation(s) in RCA: 168] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2018] [Accepted: 08/31/2018] [Indexed: 05/02/2023]
Abstract
Mitogen-activated protein kinase (MAPK) modules play key roles in the transduction of environmental and developmental signals through phosphorylation of downstream signaling targets, including other kinases, enzymes, cytoskeletal proteins or transcription factors, in all eukaryotic cells. A typical MAPK cascade consists of at least three sequentially acting serine/threonine kinases, a MAP kinase kinase kinase (MAPKKK), a MAP kinase kinase (MAPKK) and finally, the MAP kinase (MAPK) itself, with each phosphorylating, and hence activating, the next kinase in the cascade. Recent advances in our understanding of hormone signaling pathways have led to the discovery of new regulatory systems. In particular, this research has revealed the emerging role of crosstalk between the protein components of various signaling pathways and the involvement of this crosstalk in multiple cellular processes. Here we provide an overview of current models and mechanisms of hormone signaling with a special emphasis on the role of MAPKs in cell signaling networks. One-sentence summary: In this review we highlight the mechanisms of crosstalk between MAPK cascades and plant hormone signaling pathways and summarize recent findings on MAPK regulation and function in various cellular processes.
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Affiliation(s)
- Przemysław Jagodzik
- Department of Plant Physiology, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Małgorzata Tajdel-Zielinska
- Department of Biotechnology, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Agata Ciesla
- Department of Biotechnology, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Małgorzata Marczak
- Department of Biotechnology, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - Agnieszka Ludwikow
- Department of Biotechnology, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
- *Correspondence: Agnieszka Ludwikow,
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Baluška F, Mancuso S. Plant Cognition and Behavior: From Environmental Awareness to Synaptic Circuits Navigating Root Apices. MEMORY AND LEARNING IN PLANTS 2018. [DOI: 10.1007/978-3-319-75596-0_4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Woo SL, Pepe O. Microbial Consortia: Promising Probiotics as Plant Biostimulants for Sustainable Agriculture. FRONTIERS IN PLANT SCIENCE 2018; 9:1801. [PMID: 30564264 PMCID: PMC6288764 DOI: 10.3389/fpls.2018.01801] [Citation(s) in RCA: 85] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Accepted: 11/19/2018] [Indexed: 05/19/2023]
Affiliation(s)
- Sheridan L. Woo
- Department of Pharmacy, University of Naples Federico II, Naples, Italy
- National Research Council, Institute for Sustainable Plant Protection, Portici, Italy
- Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy
- *Correspondence: Sheridan L. Woo
| | - Olimpia Pepe
- Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
- CIRAM-Interdepartmental Center for Environmental Research, University of Naples Federico II, Naples, Italy
- Olimpia Pepe
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Martínez-Medina A, Van Wees SCM, Pieterse CMJ. Airborne signals from Trichoderma fungi stimulate iron uptake responses in roots resulting in priming of jasmonic acid-dependent defences in shoots of Arabidopsis thaliana and Solanum lycopersicum. PLANT, CELL & ENVIRONMENT 2017; 40:2691-2705. [PMID: 28667819 DOI: 10.1111/pce.13016] [Citation(s) in RCA: 85] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 06/15/2017] [Accepted: 06/18/2017] [Indexed: 05/05/2023]
Abstract
Root colonization by Trichoderma fungi can trigger induced systemic resistance (ISR). In Arabidopsis, Trichoderma-ISR relies on the transcription factor MYB72, which plays a dual role in the onset of ISR and the activation of Fe uptake responses. Volatile compounds (VCs) from rhizobacteria are important elicitors of MYB72 in Arabidopsis roots. Here, we investigated the mode of action of VCs from Trichoderma fungi in the onset of ISR and Fe uptake responses. VCs from Trichoderma asperellum and Trichoderma harzianum were applied in an in vitro split-plate system with Arabidopsis or tomato seedlings. Locally, Trichoderma-VCs triggered MYB72 expression and molecular, physiological and morphological Fe uptake mechanisms in Arabidopsis roots. In leaves, Trichoderma-VCs primed jasmonic acid-dependent defences, leading to an enhanced resistance against Botrytis cinerea. By using Arabidopsis micrografts of VCs-exposed rootstocks and non-exposed scions, we demonstrated that perception of Trichoderma-VCs by the roots leads to a systemic signal that primes shoots for enhanced defences. Trichoderma-VCs also elicited Fe deficiency responses and shoot immunity in tomato, suggesting that this phenomenon is expressed in different plant species. Our results indicate that Trichoderma-VCs trigger locally a readjustment of Fe homeostasis in roots, which links to systemic elicitation of ISR by priming of jasmonic acid-dependent defences.
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Affiliation(s)
- Ainhoa Martínez-Medina
- Plant-Microbe Interactions, Department of Biology, Utrecht University, 3584 CH, Utrecht, The Netherlands
- Molecular Interaction Ecology, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Institute of Ecology, Friedrich Schiller University, Leipzig, 04103, Germany
| | - Saskia C M Van Wees
- Plant-Microbe Interactions, Department of Biology, Utrecht University, 3584 CH, Utrecht, The Netherlands
| | - Corné M J Pieterse
- Plant-Microbe Interactions, Department of Biology, Utrecht University, 3584 CH, Utrecht, The Netherlands
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Rizal G, Karki S, Thakur V, Wanchana S, Alonso-Cantabrana H, Dionora J, Sheehy JE, Furbank R, von Caemmerer S, Quick WP. A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio. PLoS One 2017. [PMID: 28640841 PMCID: PMC5480886 DOI: 10.1371/journal.pone.0179567] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Recent efforts to engineer C4 photosynthetic traits into C3 plants such as rice demand an understanding of the genetic elements that enable C4 plants to outperform C3 plants. As a part of the C4 Rice Consortium’s efforts to identify genes needed to support C4 photosynthesis, EMS mutagenized sorghum populations were generated and screened to identify genes that cause a loss of C4 function. Stable carbon isotope ratio (δ13C) of leaf dry matter has been used to distinguishspecies with C3 and C4 photosynthetic pathways. Here, we report the identification of a sorghum (Sorghum bicolor) mutant with a low δ13C characteristic. A mutant (named Mut33) with a pale phenotype and stunted growth was identified from an EMS treated sorghum M2 population. The stable carbon isotope analysis of the mutants showed a decrease of 13C uptake capacity. The noise of random mutation was reduced by crossing the mutant and its wildtype (WT). The back-cross (BC1F1) progenies were like the WT parent in terms of 13C values and plant phenotypes. All the BC1F2 plants with low δ13C died before they produced their 6th leaf. Gas exchange measurements of the low δ13C sorghum mutants showed a higher CO2 compensation point (25.24 μmol CO2.mol-1air) and the maximum rate of photosynthesis was less than 5μmol.m-2.s-1. To identify the genetic determinant of this trait, four DNA pools were isolated; two each from normal and low δ13C BC1F2 mutant plants. These were sequenced using an Illumina platform. Comparison of allele frequency of the single nucleotide polymorphisms (SNPs) between the pools with contrasting phenotype showed that a locus in Chromosome 10 between 57,941,104 and 59,985,708 bps had an allele frequency of 1. There were 211 mutations and 37 genes in the locus, out of which mutations in 9 genes showed non-synonymous changes. This finding is expected to contribute to future research on the identification of the causal factor differentiating C4 from C3 species that can be used in the transformation of C3 to C4 plants.
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Affiliation(s)
- Govinda Rizal
- C4 Rice Center, IRRI, Los Banos, Laguna, the Philippines
| | - Shanta Karki
- C4 Rice Center, IRRI, Los Banos, Laguna, the Philippines
- Government of Nepal, Ministry of Agricultural Development, Kathmandu, Nepal
| | - Vivek Thakur
- C4 Rice Center, IRRI, Los Banos, Laguna, the Philippines
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad, India
| | | | - Hugo Alonso-Cantabrana
- Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, ACT, Australia
| | - Jacque Dionora
- C4 Rice Center, IRRI, Los Banos, Laguna, the Philippines
| | - John E. Sheehy
- C4 Rice Center, IRRI, Los Banos, Laguna, the Philippines
- University of Sheffield, Sheffield, United Kingdom
| | - Robert Furbank
- Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, ACT, Australia
| | - Susanne von Caemmerer
- Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, ACT, Australia
| | - William Paul Quick
- C4 Rice Center, IRRI, Los Banos, Laguna, the Philippines
- University of Sheffield, Sheffield, United Kingdom
- * E-mail:
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Pelagio-Flores R, Esparza-Reynoso S, Garnica-Vergara A, López-Bucio J, Herrera-Estrella A. Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. FRONTIERS IN PLANT SCIENCE 2017; 8:822. [PMID: 28567051 PMCID: PMC5434454 DOI: 10.3389/fpls.2017.00822] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Accepted: 05/02/2017] [Indexed: 05/03/2023]
Abstract
Trichoderma spp. are common rhizosphere inhabitants widely used as biological control agents and their role as plant growth promoting fungi has been established. Although soil pH influences several fungal and plant functional traits such as growth and nutrition, little is known about its influence in rhizospheric or mutualistic interactions. The role of pH in the Trichoderma-Arabidopsis interaction was studied by determining primary root growth and lateral root formation, root meristem status and cell viability, quiescent center (QC) integrity, and auxin inducible gene expression. Primary root growth phenotypes in wild type seedlings and STOP1 mutants allowed identification of a putative root pH sensing pathway likely operating in plant-fungus recognition. Acidification by Trichoderma induced auxin redistribution within Arabidopsis columella root cap cells, causing root tip bending and growth inhibition. Root growth stoppage correlated with decreased cell division and with the loss of QC integrity and cell viability, which were reversed by buffering the medium. In addition, stop1, an Arabidopsis mutant sensitive to low pH, was oversensitive to T. atroviride primary root growth repression, providing genetic evidence that a pH root sensing mechanism reprograms root architecture during the interaction. Our results indicate that root sensing of pH mediates the interaction of Trichoderma with plants.
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Affiliation(s)
- Ramón Pelagio-Flores
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPNIrapuato, México
| | - Saraí Esparza-Reynoso
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de HidalgoMorelia, México
| | - Amira Garnica-Vergara
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de HidalgoMorelia, México
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de HidalgoMorelia, México
| | - Alfredo Herrera-Estrella
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPNIrapuato, México
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