1
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Gerwin J, Torres-Dowdall J, Brown TF, Meyer A. Expansion and Functional Diversification of Long-Wavelength-Sensitive Opsin in Anabantoid Fishes. J Mol Evol 2024; 92:432-448. [PMID: 38861038 PMCID: PMC11291592 DOI: 10.1007/s00239-024-10181-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 05/25/2024] [Indexed: 06/12/2024]
Abstract
Gene duplication is one of the most important sources of novel genotypic diversity and the subsequent evolution of phenotypic diversity. Determining the evolutionary history and functional changes of duplicated genes is crucial for a comprehensive understanding of adaptive evolution. The evolutionary history of visual opsin genes is very dynamic, with repeated duplication events followed by sub- or neofunctionalization. While duplication of the green-sensitive opsins rh2 is common in teleost fish, fewer cases of multiple duplication events of the red-sensitive opsin lws are known. In this study, we investigate the visual opsin gene repertoire of the anabantoid fishes, focusing on the five lws opsin genes found in the genus Betta. We determine the evolutionary history of the lws opsin gene by taking advantage of whole-genome sequences of nine anabantoid species, including the newly assembled genome of Betta imbellis. Our results show that at least two independent duplications of lws occurred in the Betta lineage. The analysis of amino acid sequences of the lws paralogs of Betta revealed high levels of diversification in four of the seven transmembrane regions of the lws protein. Amino acid substitutions at two key-tuning sites are predicted to lead to differentiation of absorption maxima (λmax) between the paralogs within Betta. Finally, eye transcriptomics of B. splendens at different developmental stages revealed expression shifts between paralogs for all cone opsin classes. The lws genes are expressed according to their relative position in the lws opsin cluster throughout ontogeny. We conclude that temporal collinearity of lws expression might have facilitated subfunctionalization of lws in Betta and teleost opsins in general.
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Affiliation(s)
- Jan Gerwin
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany
- German Cancer Research Center (DKFZ), Division Signaling and Functional Genomics and Department of Cell and Molecular Biology, Medical Faculty Mannheim, Heidelberg University, Heidelberg, Germany
| | - Julián Torres-Dowdall
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany.
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA.
| | - Thomas F Brown
- Max Planck Institute of Molecular Cellular Biology and Genetics, Dresden, Germany
- Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany
| | - Axel Meyer
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany.
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2
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Matsuo M, Matsuyama M, Kobayashi T, Kanda S, Ansai S, Kawakami T, Hosokawa E, Daido Y, Kusakabe TG, Naruse K, Fukamachi S. Retinal Cone Mosaic in sws1-Mutant Medaka ( Oryzias latipes), A Teleost. Invest Ophthalmol Vis Sci 2022; 63:21. [DOI: 10.1167/iovs.63.11.21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Affiliation(s)
- Megumi Matsuo
- Department of Chemical and Biological Sciences, Japan Women's University, Bunkyo-ku, Tokyo, Japan
| | - Makoto Matsuyama
- Division of Molecular Genetics, Shigei Medical Research Institute, 2117 Yamada, Minami-ku, Okayama, Japan
| | - Tomoe Kobayashi
- Division of Molecular Genetics, Shigei Medical Research Institute, 2117 Yamada, Minami-ku, Okayama, Japan
| | - Shinji Kanda
- Laboratory of Physiology, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan
| | - Satoshi Ansai
- Laboratory of Bioresources/NIBB Center of the Interuniversity Bio-Backup Project, National Institute for Basic Biology, Okazaki, Aichi, Japan
| | - Taichi Kawakami
- Institute for Integrative Neurobiology and Department of Biology, Graduate School of Natural Science, Konan University, Kobe, Hyogo, Japan
| | - Erika Hosokawa
- Institute for Integrative Neurobiology and Department of Biology, Graduate School of Natural Science, Konan University, Kobe, Hyogo, Japan
| | - Yutaka Daido
- Institute for Integrative Neurobiology and Department of Biology, Graduate School of Natural Science, Konan University, Kobe, Hyogo, Japan
| | - Takehiro G. Kusakabe
- Institute for Integrative Neurobiology and Department of Biology, Graduate School of Natural Science, Konan University, Kobe, Hyogo, Japan
| | - Kiyoshi Naruse
- Laboratory of Bioresources/NIBB Center of the Interuniversity Bio-Backup Project, National Institute for Basic Biology, Okazaki, Aichi, Japan
| | - Shoji Fukamachi
- Department of Chemical and Biological Sciences, Japan Women's University, Bunkyo-ku, Tokyo, Japan
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3
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Salgado D, Mariluz BR, Araujo M, Lorena J, Perez LN, Ribeiro RDL, Sousa JDF, Schneider PN. Light-induced shifts in opsin gene expression in the four-eyed fish Anableps anableps. Front Neurosci 2022; 16:995469. [PMID: 36248668 PMCID: PMC9556854 DOI: 10.3389/fnins.2022.995469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 09/08/2022] [Indexed: 11/13/2022] Open
Abstract
The development of the vertebrate eye is a complex process orchestrated by several conserved transcriptional and signaling regulators. Aside from partial or complete loss, examples of exceptional modifications to this intricate organ are scarce. The unique eye of the four-eyed fish Anableps anableps is composed of duplicated corneas and pupils, as well as specialized retina regions associated with simultaneous aerial and aquatic vision. In a previous transcriptomic study of the A. anableps developing eye we identified expression of twenty non-visual and eleven visual opsin genes. Here, we surveyed the expression territories of three non-visual melanopsins genes (opn4×1, opn4×2, opn4m3), one teleost multiple tissue opsin (tmt1b) and two visual opsins (lws and rh2-1) in dorsal and ventral retinas. Our data showed that asymmetry of non-visual opsin expression is only established after birth. During embryonic development, while inside pregnant females, the expression of opn4×1, opn4×2, and tmt1b spans the whole retina. In juvenile fish (post birth), the expression of opn4×1, opn4×2, opn4m3, and tmt1b genes becomes restricted to the ventral retina, which receives aerial light. Raising juvenile fish in clear water instead of the murky waters found in its natural habitat is sufficient to change gene expression territories of opn4×1, opn4×2, opn4m3, tmt1b, and rh2-1, demonstrating that different lighting conditions can shift opsin expression and potentially contribute to changes in spectral sensitivity in the four eyed fish.
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Affiliation(s)
- Daniele Salgado
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Bertha R. Mariluz
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Maysa Araujo
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Jamily Lorena
- Department of Integrative Biology, Michigan State University, East Lansing, MI, United States
| | - Louise N. Perez
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
| | | | - Josane de F. Sousa
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
| | - Patricia N. Schneider
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
- *Correspondence: Patricia N. Schneider,
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4
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Musilova Z, Salzburger W, Cortesi F. The Visual Opsin Gene Repertoires of Teleost Fishes: Evolution, Ecology, and Function. Annu Rev Cell Dev Biol 2021; 37:441-468. [PMID: 34351785 DOI: 10.1146/annurev-cellbio-120219-024915] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Visual opsin genes expressed in the rod and cone photoreceptor cells of the retina are core components of the visual sensory system of vertebrates. Here, we provide an overview of the dynamic evolution of visual opsin genes in the most species-rich group of vertebrates, teleost fishes. The examination of the rich genomic resources now available for this group reveals that fish genomes contain more copies of visual opsin genes than are present in the genomes of amphibians, reptiles, birds, and mammals. The expansion of opsin genes in fishes is due primarily to a combination of ancestral and lineage-specific gene duplications. Following their duplication, the visual opsin genes of fishes repeatedly diversified at the same key spectral-tuning sites, generating arrays of visual pigments sensitive from the ultraviolet to the red spectrum of the light. Species-specific opsin gene repertoires correlate strongly with underwater light habitats, ecology, and color-based sexual selection. Expected final online publication date for the Annual Review of Cell and Developmental Biology, Volume 37 is October 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Zuzana Musilova
- Department of Zoology, Charles University, Prague 128 44, Czech Republic;
| | | | - Fabio Cortesi
- Queensland Brain Institute, The University of Queensland, Brisbane 4072, Queensland, Australia;
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5
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Torres-Dowdall J, Karagic N, Härer A, Meyer A. Diversity in visual sensitivity across Neotropical cichlid fishes via differential expression and intraretinal variation of opsin genes. Mol Ecol 2021; 30:1880-1891. [PMID: 33619757 DOI: 10.1111/mec.15855] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 02/10/2021] [Accepted: 02/12/2021] [Indexed: 02/06/2023]
Abstract
The visual system of vertebrates has greatly contributed to our understanding of how different molecular mechanisms shape adaptive phenotypic diversity. Extensive work on African cichlid fishes has shown how variation in opsin gene expression mediates diversification as well as convergent evolution in colour vision. This trait has received less attention in Neotropical cichlids, the sister lineage to African cichlids, but the work done so far led to the conclusion that colour vision is much less variable in Neotropical species. However, as only few taxa have been investigated and as recent work found contradicting patterns, the diversity in meotropical cichlids might be greatly underestimated. Here, we survey patterns of opsin gene expression in 35 representative species of Neotropical cichlids, revealing much more variation than previously known. This diversity can be attributed to two main mechanisms: (i) differential expression of the blue-sensitive sws2a, the green-sensitive rh2a, and the red-sensitive lws opsin genes, and (ii) simultaneous expression of up to five opsin genes, instead of only three as commonly found, in a striking dorsoventral pattern across the retina. This intraretinal variation in opsin genes expression results in steep gradients in visual sensitivity that may represent a convergent adaptation to clear waters with broad light environments. These results highlight the role and flexibility of gene expression in generating adaptive phenotypic diversification.
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Affiliation(s)
- Julián Torres-Dowdall
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany
| | - Nidal Karagic
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany
| | - Andreas Härer
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany
| | - Axel Meyer
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany
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6
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Corbo JC. Vitamin A 1/A 2 chromophore exchange: Its role in spectral tuning and visual plasticity. Dev Biol 2021; 475:145-155. [PMID: 33684435 DOI: 10.1016/j.ydbio.2021.03.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 03/01/2021] [Indexed: 01/20/2023]
Abstract
Vertebrate rod and cone photoreceptors detect light via a specialized organelle called the outer segment. This structure is packed with light-sensitive molecules known as visual pigments that consist of a G-protein-coupled, seven-transmembrane protein known as opsin, and a chromophore prosthetic group, either 11-cis retinal ('A1') or 11-cis 3,4-didehydroretinal ('A2'). The enzyme cyp27c1 converts A1 into A2 in the retinal pigment epithelium. Replacing A1 with A2 in a visual pigment red-shifts its spectral sensitivity and broadens its bandwidth of absorption at the expense of decreased photosensitivity and increased thermal noise. The use of vitamin A2-based visual pigments is strongly associated with the occupation of aquatic habitats in which the ambient light is red-shifted. By modulating the A1/A2 ratio in the retina, an organism can dynamically tune the spectral sensitivity of the visual system to better match the predominant wavelengths of light in its environment. As many as a quarter of all vertebrate species utilize A2, at least during a part of their life cycle or under certain environmental conditions. A2 utilization therefore represents an important and widespread mechanism of sensory plasticity. This review provides an up-to-date account of the A1/A2 chromophore exchange system.
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Affiliation(s)
- Joseph C Corbo
- Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, 63110, United States.
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7
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Warrington RE, Davies WIL, Hemmi JM, Hart NS, Potter IC, Collin SP, Hunt DM. Visual opsin expression and morphological characterization of retinal photoreceptors in the pouched lamprey (Geotria australis, Gray). J Comp Neurol 2020; 529:2265-2282. [PMID: 33336375 DOI: 10.1002/cne.25092] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 12/09/2020] [Accepted: 12/09/2020] [Indexed: 11/09/2022]
Abstract
Lampreys are extant members of the agnathan (jawless) vertebrates that diverged ~500 million years ago, during a critical stage of vertebrate evolution when image-forming eyes first emerged. Among lamprey species assessed thus far, the retina of the southern hemisphere pouched lamprey, Geotria australis, is unique, in that it possesses morphologically distinct photoreceptors and expresses five visual photopigments. This study focused on determining the number of different photoreceptors present in the retina of G. australis and whether each cell type expresses a single opsin class. Five photoreceptor subtypes were identified based on ultrastructure and differential expression of one of each of the five different visual opsin classes (lws, sws1, sws2, rh1, and rh2) known to be expressed in the retina. This suggests, therefore, that the retina of G. australis possesses five spectrally and morphologically distinct photoreceptors, with the potential for complex color vision. Each photoreceptor subtype was shown to have a specific spatial distribution in the retina, which is potentially associated with changes in spectral radiance across different lines of sight. These results suggest that there have been strong selection pressures for G. australis to maintain broad spectral sensitivity for the brightly lit surface waters that this species inhabits during its marine phase. These findings provide important insights into the functional anatomy of the early vertebrate retina and the selection pressures that may have led to the evolution of complex color vision.
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Affiliation(s)
- Rachael E Warrington
- Neuroscience Research Institute, University of California Santa Barbara, Santa Barbara, California, USA.,School of Biological Sciences, The University of Western Australia, Perth, Western Australia, Australia.,Oceans Institute, The University of Western Australia, Perth, Western Australia, Australia
| | - Wayne I L Davies
- School of Biological Sciences, The University of Western Australia, Perth, Western Australia, Australia.,Oceans Institute, The University of Western Australia, Perth, Western Australia, Australia.,Umeå Centre for Molecular Medicine, Umeå University, Umeå, Sweden.,Centre for Ophthalmology and Visual Science, Lions Eye Institute, University of Western Australia, Perth, Western Australia, Australia.,School of Life Sciences, La Trobe University, Melbourne, Victoria, Australia
| | - Jan M Hemmi
- School of Biological Sciences, The University of Western Australia, Perth, Western Australia, Australia.,Oceans Institute, The University of Western Australia, Perth, Western Australia, Australia
| | - Nathan S Hart
- School of Biological Sciences, The University of Western Australia, Perth, Western Australia, Australia.,Oceans Institute, The University of Western Australia, Perth, Western Australia, Australia.,Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Ian C Potter
- Centre for Sustainable Aquatic Ecosystems, Murdoch University, Perth, Western Australia, Australia
| | - Shaun P Collin
- School of Biological Sciences, The University of Western Australia, Perth, Western Australia, Australia.,Oceans Institute, The University of Western Australia, Perth, Western Australia, Australia.,Centre for Ophthalmology and Visual Science, Lions Eye Institute, University of Western Australia, Perth, Western Australia, Australia.,School of Life Sciences, La Trobe University, Melbourne, Victoria, Australia
| | - David M Hunt
- School of Biological Sciences, The University of Western Australia, Perth, Western Australia, Australia.,Centre for Ophthalmology and Visual Science, Lions Eye Institute, University of Western Australia, Perth, Western Australia, Australia
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8
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Tsujimura T. Mechanistic insights into the evolution of the differential expression of tandemly arrayed cone opsin genes in zebrafish. Dev Growth Differ 2020; 62:465-475. [PMID: 32712957 DOI: 10.1111/dgd.12690] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 07/10/2020] [Accepted: 07/18/2020] [Indexed: 12/21/2022]
Abstract
The genome of many organisms contains several loci consisting of duplicated genes that are arrayed in tandem. The daughter genes produced by duplication typically exhibit differential expression patterns with each other or otherwise experience pseudogenization. Remarkably, opsin genes in fish are preserved after many duplications in different lineages. This fact indicates that fish opsin genes are characterized by a regulatory mechanism that could intrinsically facilitate the differentiation of the expression patterns. However, little is known about the mechanisms that underlie the differential expression patterns or how they were established during evolution. The loci of green (RH2)- and red (LWS)-sensitive cone opsin genes in zebrafish have been used as model systems to study the differential regulation of tandemly arrayed opsin genes. Over a decade of studies have uncovered several mechanistic features that might have assisted the differentiation and preservation of duplicated genes. Furthermore, recent progress in the understanding of the transcriptional process in general has added essential insights. In this article, the current understanding of the transcriptional regulation of differentially expressed tandemly arrayed cone opsin genes in zebrafish is summarized and a possible evolutionary scenario that could achieve this differentiation is discussed.
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Affiliation(s)
- Taro Tsujimura
- Institute for the Advanced Study of Human Biology (WPI-ASHBi), Kyoto University, Kyoto, Japan
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9
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Carleton KL, Escobar-Camacho D, Stieb SM, Cortesi F, Marshall NJ. Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes. J Exp Biol 2020; 223:jeb193334. [PMID: 32327561 PMCID: PMC7188444 DOI: 10.1242/jeb.193334] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Among vertebrates, teleost eye diversity exceeds that found in all other groups. Their spectral sensitivities range from ultraviolet to red, and the number of visual pigments varies from 1 to over 40. This variation is correlated with the different ecologies and life histories of fish species, including their variable aquatic habitats: murky lakes, clear oceans, deep seas and turbulent rivers. These ecotopes often change with the season, but fish may also migrate between ecotopes diurnally, seasonally or ontogenetically. To survive in these variable light habitats, fish visual systems have evolved a suite of mechanisms that modulate spectral sensitivities on a range of timescales. These mechanisms include: (1) optical media that filter light, (2) variations in photoreceptor type and size to vary absorbance and sensitivity, and (3) changes in photoreceptor visual pigments to optimize peak sensitivity. The visual pigment changes can result from changes in chromophore or changes to the opsin. Opsin variation results from changes in opsin sequence, opsin expression or co-expression, and opsin gene duplications and losses. Here, we review visual diversity in a number of teleost groups where the structural and molecular mechanisms underlying their spectral sensitivities have been relatively well determined. Although we document considerable variability, this alone does not imply functional difference per se. We therefore highlight the need for more studies that examine species with known sensitivity differences, emphasizing behavioral experiments to test whether such differences actually matter in the execution of visual tasks that are relevant to the fish.
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Affiliation(s)
- Karen L Carleton
- Department of Biology, University of Maryland, College Park, MD 20742, USA
| | | | - Sara M Stieb
- Centre of Ecology, Evolution and Biogeochemistry, EAWAG Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
- Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
| | - Fabio Cortesi
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
| | - N Justin Marshall
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
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10
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Amorim PF, Costa WJEM. Multigene phylogeny supports diversification of four-eyed fishes and one-sided livebearers (Cyprinodontiformes: Anablepidae) related to major South American geological events. PLoS One 2018; 13:e0199201. [PMID: 29912943 PMCID: PMC6005514 DOI: 10.1371/journal.pone.0199201] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 06/04/2018] [Indexed: 11/18/2022] Open
Abstract
The high diversity of Neotropical fishes has been attributed to major South American palaeogeographic events, such as Andean uplift, rise of the Isthmus of Panama and marine transgressions. However, the unavailability of temporal information about evolution and diversification of some fish groups prevents the establishment of robust hypotheses about correlations between species diversification and proposed palaeogeographical events. One example is the Anablepidae, a family of teleost fishes found mostly in coastal habitats of Central and South America, but also in some inner river basins of South America. Historical aspects of the distribution patterns of the Anablepidae were never analysed and no accurate estimation of time of its origin and diversification is presently available. A multi-gene analysis was performed to estimate Anablepidae phylogenetic position, age and biogeography, comprising seven nuclear genes. The suborder Cyprinodontoidei was recovered in three major clades, one comprising all the Old World Cyprinodontoidei and two comprising New World lineages. Anablepidae was recovered as the sister group of the New World Poeciliidae, with the Amazonian genus Fluviphylax as their sister group. The ages found for the origin and diversification of Cyprinodontiformes were congruent with the pattern recorded for other vertebrate groups, with an origin anterior to the Cretaceous-Paleogene (K-Pg) transition and diversification during the Paleogene. The age estimated for the split between the Atlantic and Pacific lineages of Anableps was congruent with the rise of Panamanian Isthmus. The results suggest Miocene marine transgressions as determinant to the current distribution of Jenynsia.
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Affiliation(s)
- Pedro F. Amorim
- Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil
| | - Wilson J. E. M. Costa
- Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil
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11
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Perez LN, Lorena J, Costa CM, Araujo MS, Frota-Lima GN, Matos-Rodrigues GE, Martins RAP, Mattox GMT, Schneider PN. Eye development in the four-eyed fish Anableps anableps: cranial and retinal adaptations to simultaneous aerial and aquatic vision. Proc Biol Sci 2018; 284:rspb.2017.0157. [PMID: 28381624 DOI: 10.1098/rspb.2017.0157] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Accepted: 03/06/2017] [Indexed: 12/25/2022] Open
Abstract
The unique eyes of the four-eyed fish Anableps anableps have long intrigued biologists. Key features associated with the bulging eye of Anableps include the expanded frontal bone and the duplicated pupils and cornea. Furthermore, the Anableps retina expresses different photoreceptor genes in dorsal and ventral regions, potentially associated with distinct aerial and aquatic stimuli. To gain insight into the developmental basis of the Anableps unique eye, we examined neurocranium and eye ontogeny, as well as photoreceptor gene expression during larval stages. First, we described six larval stages during which duplication of eye structures occurs. Our osteological analysis of neurocranium ontogeny revealed another distinctive Anablepid feature: an ossified interorbital septum partially separating the orbital cavities. Furthermore, we identified the onset of differences in cell proliferation and cell layer density between dorsal and ventral regions of the retina. Finally, we show that differential photoreceptor gene expression in the retina initiates during development, suggesting that it is inherited and not environmentally determined. In sum, our results shed light on the ontogenetic steps leading to the highly derived Anableps eye.
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Affiliation(s)
- Louise N Perez
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Pará, Brazil
| | - Jamily Lorena
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Pará, Brazil
| | - Carinne M Costa
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Pará, Brazil
| | - Maysa S Araujo
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Pará, Brazil
| | | | | | - Rodrigo A P Martins
- Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - George M T Mattox
- Departamento de Biologia, Universidade Federal de São Carlos, Campus Sorocaba, São Paulo, Brazil
| | - Patricia N Schneider
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Pará, Brazil
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12
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Iwanicki TW, Novales Flamarique I, Ausiό J, Morris E, Taylor JS. Fine-tuning light sensitivity in the starry flounder (Platichthys stellatus) retina: Regional variation in photoreceptor cell morphology and opsin gene expression. J Comp Neurol 2017; 525:2328-2342. [DOI: 10.1002/cne.24205] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 03/08/2017] [Accepted: 03/08/2017] [Indexed: 01/30/2023]
Affiliation(s)
- Tom W. Iwanicki
- Department of Biology; University of Victoria; Victoria British Columbia Canada
| | - Iñigo Novales Flamarique
- Department of Biology; University of Victoria; Victoria British Columbia Canada
- Department of Biological Sciences; Simon Fraser University; Burnaby British Columbia Canada
| | - Juan Ausiό
- Department of Biochemistry; University of Victoria; Victoria British Columbia Canada
| | - Emily Morris
- Department of Biology; University of Victoria; Victoria British Columbia Canada
| | - John S. Taylor
- Department of Biology; University of Victoria; Victoria British Columbia Canada
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13
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Chow DWY, Westermeyer HD, Fernando N, Hoey S, Dubielzig RR. Unilateral ventral strabismus in an aquarium Silver Arowana (Osteoglossum bicirrhosum). Vet Ophthalmol 2016; 19:510-517. [PMID: 26439990 DOI: 10.1111/vop.12320] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
An adult silver arowana (Osteoglossum bicirrhosum) presented with a 2-month history of acute onset ventral strabismus of the right eye associated with a cystic structure overlying the dorsal aspect of the globe. Aspiration of the cyst, removal of redundant conjunctival tissue, and apposition of the surgical edges of the conjunctiva did not correct the strabismus. Magnetic resonance imaging of the head and histopathology of the eye did not reveal significant differences between affected and unaffected eyes except for a more posterior dorsal rectus muscle insertion site in the affected eye. This case report documents and describes a syndrome well known among arowana hobbyists as 'drop eye'.
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Affiliation(s)
- Derek W Y Chow
- Veterinary Specialty Hospital of Hong Kong, 1/F-2/F 165 Wanchai Road, Wan Chai, Hong Kong
| | - Hans D Westermeyer
- Department of Clinical Sciences, North Carolina State University College of Veterinary Medicine, Raleigh, NC, 27606, USA.
| | - Nimal Fernando
- Veterinary Hospital, Zoological Operations & Education, Ocean Park Corporation, Ocean Park Road, Aberdeen, Hong Kong
| | - Seamus Hoey
- Department of Surgical Sciences, School of Veterinary Medicine, University of Wisconsin- Madison, Madison, WI, 53706, USA
| | - Richard R Dubielzig
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin- Madison, Madison, WI, 53706, USA
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Dalton BE, de Busserolles F, Marshall NJ, Carleton KL. Retinal specialization through spatially varying cell densities and opsin coexpression in cichlid fish. ACTA ACUST UNITED AC 2016; 220:266-277. [PMID: 27811302 DOI: 10.1242/jeb.149211] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Accepted: 10/25/2016] [Indexed: 01/30/2023]
Abstract
The distinct behaviours of animals and the varied habitats in which animals live place different requirements on their visual systems. A trade-off exists between resolution and sensitivity, with these properties varying across the retina. Spectral sensitivity, which affects both achromatic and chromatic (colour) vision, also varies across the retina, though the function of this inhomogeneity is less clear. We previously demonstrated spatially varying spectral sensitivity of double cones in the cichlid fish Metriaclima zebra owing to coexpression of different opsins. Here, we map the distributions of ganglion cells and cone cells and quantify opsin coexpression in single cones to show these also vary across the retina. We identify an area centralis with peak acuity and infrequent coexpression, which may be suited for tasks such as foraging and detecting male signals. The peripheral retina has reduced ganglion cell densities and increased opsin coexpression. Modeling of cichlid visual tasks indicates that coexpression might hinder colour discrimination of foraging targets and some fish colours. But, coexpression might improve contrast detection of dark objects against bright backgrounds, which might be useful for detecting predators or zooplankton. This suggests a trade-off between acuity and colour discrimination in the central retina versus lower resolution but more sensitive contrast detection in the peripheral retina. Significant variation in the pattern of coexpression among individuals, however, raises interesting questions about the selective forces at work.
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Affiliation(s)
- Brian E Dalton
- Department of Biology, University of Maryland, College Park, MD 20742, USA
| | | | - N Justin Marshall
- Queensland Brain Institute, University of Queensland, Brisbane 4072, Australia
| | - Karen L Carleton
- Department of Biology, University of Maryland, College Park, MD 20742, USA
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Kondrashev S, Kornienko M, Gnyubkina V, Frolova L. Intraretinal variability and specialization of cones in Japanese anchovy (Engraulis japonicus, Engraulidae). J Morphol 2016; 277:472-81. [DOI: 10.1002/jmor.20511] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Revised: 12/08/2015] [Accepted: 01/02/2016] [Indexed: 11/11/2022]
Affiliation(s)
- S.L. Kondrashev
- A.V. Zhirmunsky Institute of Marine Biology, Far Eastern Branch of the Russian Academy of Sciences; Vladivostok 690041 Russia
| | - M.S. Kornienko
- A.V. Zhirmunsky Institute of Marine Biology, Far Eastern Branch of the Russian Academy of Sciences; Vladivostok 690041 Russia
| | - V.P. Gnyubkina
- A.V. Zhirmunsky Institute of Marine Biology, Far Eastern Branch of the Russian Academy of Sciences; Vladivostok 690041 Russia
| | - L.T. Frolova
- A.V. Zhirmunsky Institute of Marine Biology, Far Eastern Branch of the Russian Academy of Sciences; Vladivostok 690041 Russia
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Tsujimura T, Masuda R, Ashino R, Kawamura S. Spatially differentiated expression of quadruplicated green-sensitive RH2 opsin genes in zebrafish is determined by proximal regulatory regions and gene order to the locus control region. BMC Genet 2015; 16:130. [PMID: 26537431 PMCID: PMC4634787 DOI: 10.1186/s12863-015-0288-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2015] [Accepted: 10/27/2015] [Indexed: 11/22/2022] Open
Abstract
Background Fish are remarkably diverse in repertoires of visual opsins by gene duplications. Differentiation of their spatiotemporal expression patterns and absorption spectra enables fine-tuning of feature detection in spectrally distinct regions of the visual field during ontogeny. Zebrafish have quadruplicated green-sensitive (RH2) opsin genes in tandem (RH2-1, −2, −3, −4), which are expressed in the short member of the double cones (SDC). The shortest wavelength RH2 subtype (RH2-1) is expressed in the central to dorsal area of the adult retina. The second shortest wave subtype (RH2-2) is expressed overlapping with RH2-1 but extending outside of it. The second longest wave subtype (RH2-3) is expressed surrounding the RH2–2 area, and the longest wave subtype (RH2-4) is expressed outside of the RH2-3 area broadly occupying the ventral area. Expression of the four RH2 genes in SDC requires a single enhancer (RH2-LCR), but the mechanism of their spatial differentiation remains elusive. Results Functional comparison of the RH2-LCR with its counterpart in medaka revealed that the regulatory role of the RH2-LCR in SDC-specific expression is evolutionarily conserved. By combining the RH2-LCR and the proximal upstream region of each RH2 gene with fluorescent protein reporters, we show that the RH2-LCR and the RH2-3 proximal regulatory region confer no spatial selectivity of expression in the retina. But those of RH2-1, −2 and −4 are capable of inducing spatial differentiation of expression. Furthermore, by analyzing transgenic fish with a series of arrays consisting of the RH2-LCR and multiple upstream regions of the RH2 genes in different orders, we show that a gene expression pattern related to an upstream region is greatly influenced by another flanking upstream region in a relative position-dependent manner. Conclusions The zebrafish RH2 genes except RH2-3 acquired differential cis-elements in the proximal upstream regions to specify the differential expression patterns. The input from these proximal elements collectively dictates the actual gene expression pattern of the locus, context-dependently. Importantly, competition for the RH2-LCR activity among the replicates is critical in this collective regulation, facilitating differentiation of expression among them. This combination of specificity and generality enables seemingly complicated spatial differentiation of duplicated opsin genes characteristic in fish. Electronic supplementary material The online version of this article (doi:10.1186/s12863-015-0288-7) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Taro Tsujimura
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, 277-8562, Chiba, Japan. .,Department of Advanced Nephrology and Regenerative Medicine, Division of Tissue Engineering, the University of Tokyo Hospital, Hongo 7-3-1, Bunkyo-ku, 113-8655, Tokyo, Japan.
| | - Ryoko Masuda
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, 277-8562, Chiba, Japan.
| | - Ryuichi Ashino
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, 277-8562, Chiba, Japan.
| | - Shoji Kawamura
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, 277-8562, Chiba, Japan.
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Dalton BE, Lu J, Leips J, Cronin TW, Carleton KL. Variable light environments induce plastic spectral tuning by regional opsin coexpression in the African cichlid fish, Metriaclima zebra. Mol Ecol 2015; 24:4193-204. [PMID: 26175094 PMCID: PMC4532641 DOI: 10.1111/mec.13312] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2014] [Revised: 07/02/2015] [Accepted: 07/07/2015] [Indexed: 01/29/2023]
Abstract
Critical behaviours such as predation and mate choice often depend on vision. Visual systems are sensitive to the spectrum of light in their environment, which can vary extensively both within and among habitats. Evolutionary changes in spectral sensitivity contribute to divergence and speciation. Spectral sensitivity of the retina is primarily determined by visual pigments, which are opsin proteins bound to a chromophore. We recently discovered that photoreceptors in different regions of the retina, which view objects against distinct environmental backgrounds, coexpress different pairs of opsins in an African cichlid fish, Metriaclima zebra. This coexpression tunes the sensitivity of the retinal regions to the corresponding backgrounds and may aid in detection of dark objects, such as predators. Although intraretinal regionalization of spectral sensitivity in many animals correlates with their light environments, it is unknown whether variation in the light environment induces developmentally plastic alterations of intraretinal sensitivity regions. Here, we demonstrate with fluorescent in situ hybridization and qPCR that the spectrum and angle of environmental light both influence the development of spectral sensitivity regions by altering the distribution and level of opsins across the retina. Normally, M. zebra coexpresses LWS opsin with RH2Aα opsin in double cones of the ventral but not the dorsal retina. However, when illuminated from below throughout development, adult M. zebra coexpressed LWS and RH2Aα in double cones both dorsally and ventrally. Thus, environmental background spectra alter the spectral sensitivity pattern that develops across the retina, potentially influencing behaviours and related evolutionary processes such as courtship and speciation.
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Affiliation(s)
- Brian E Dalton
- Department of Biology, University of Maryland, Baltimore County, MD, 21250, USA
- Department of Biology, University of Maryland, College Park, MD, 20742, USA
| | - Jessica Lu
- Department of Biology, University of Maryland, College Park, MD, 20742, USA
| | - Jeff Leips
- Department of Biology, University of Maryland, Baltimore County, MD, 21250, USA
| | - Thomas W Cronin
- Department of Biology, University of Maryland, Baltimore County, MD, 21250, USA
| | - Karen L Carleton
- Department of Biology, University of Maryland, College Park, MD, 20742, USA
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Abstract
Dragonflies are colorful and large-eyed animals strongly dependent on color vision. Here we report an extraordinary large number of opsin genes in dragonflies and their characteristic spatiotemporal expression patterns. Exhaustive transcriptomic and genomic surveys of three dragonflies of the family Libellulidae consistently identified 20 opsin genes, consisting of 4 nonvisual opsin genes and 16 visual opsin genes of 1 UV, 5 short-wavelength (SW), and 10 long-wavelength (LW) type. Comprehensive transcriptomic survey of the other dragonflies representing an additional 10 families also identified as many as 15-33 opsin genes. Molecular phylogenetic analysis revealed dynamic multiplications and losses of the opsin genes in the course of evolution. In contrast to many SW and LW genes expressed in adults, only one SW gene and several LW genes were expressed in larvae, reflecting less visual dependence and LW-skewed light conditions for their lifestyle under water. In this context, notably, the sand-burrowing or pit-dwelling species tended to lack SW gene expression in larvae. In adult visual organs: (i) many SW genes and a few LW genes were expressed in the dorsal region of compound eyes, presumably for processing SW-skewed light from the sky; (ii) a few SW genes and many LW genes were expressed in the ventral region of compound eyes, probably for perceiving terrestrial objects; and (iii) expression of a specific LW gene was associated with ocelli. Our findings suggest that the stage- and region-specific expressions of the diverse opsin genes underlie the behavior, ecology, and adaptation of dragonflies.
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