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Purtscher FRS, Hofer TS. Probing the range of applicability of structure- and energy-adjusted QM/MM link bonds III: QM/MM MD simulations of solid-state systems at the example of layered carbon structures. J Comput Chem 2024; 45:2186-2197. [PMID: 38795379 DOI: 10.1002/jcc.27428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 04/11/2024] [Accepted: 04/29/2024] [Indexed: 05/27/2024]
Abstract
The previously introduced workflow to achieve an energetically and structurally optimized description of frontier bonds in quantum mechanical/molecular mechanics (QM/MM)-type applications was extended into the regime of computational material sciences at the example of a layered carbon model systems. Optimized QM/MM link bond parameters at HSEsol/6-311G(d,p) and self-consistent density functional tight binding (SCC-DFTB) were derived for graphitic systems, enabling detailed investigation of specific structure motifs occurring in graphene-derived structures v i a quantum-chemical calculations. Exemplary molecular dynamics (MD) simulations in the isochoric-isothermic (NVT) ensemble were carried out to study the intercalation of lithium and the properties of the Stone-Thrower-Wales defect. The diffusivity of lithium as well as hydrogen and proton adsorption on a defective graphene surface served as additional example. The results of the QM/MM MD simulations provide detailed insight into the applicability of the employed link-bond strategy when studying intercalation and adsorption properties of graphitic materials.
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Affiliation(s)
- Felix R S Purtscher
- Institute of General, Inorganic and Theoretical Chemistry Center for Chemistry and Biomedicine, University of Innsbruck, Innsbruck, Austria
| | - Thomas S Hofer
- Institute of General, Inorganic and Theoretical Chemistry Center for Chemistry and Biomedicine, University of Innsbruck, Innsbruck, Austria
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2
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Perdew JP. My life in science: Lessons for yours? J Chem Phys 2024; 160:010402. [PMID: 38180261 DOI: 10.1063/5.0179606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Accepted: 10/26/2023] [Indexed: 01/06/2024] Open
Abstract
Because of an acquired obsession to understand as much as possible in a limited but important area of science and because of optimism, luck, and help from others, my life in science turned out to be much better than I or others could have expected or planned. This is the story of how that happened, and also the story of the groundstate density functional theory of electronic structure, told from a personal perspective.
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Affiliation(s)
- John P Perdew
- Department of Physics and Engineering Physics, Tulane University, New Orleans, Louisiana 70118, USA
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3
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Malkina OL, Lemken F, Asher JR, Hierso JC, Bűhl M, Malkin VG. Transmission of spin-polarization by π-orbitals: an approach to assessing its effect on NMR spin-spin coupling and EPR hyperfine structure. Phys Chem Chem Phys 2022; 24:24039-24049. [PMID: 36168793 DOI: 10.1039/d2cp03295c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new approach to assessing the effect of the transmission of spin-polarization by π-orbitals (π-TSP) is presented. In order to switch off the π-TSP effect, we artificially average the α- and β-densities of the valence π-orbitals when calculating the exchange-correlation contribution to the Fock matrix in the unrestricted Kohn-Sham framework. The π-TSP effect is then evaluated as the difference between the results obtained with switched-on and switched-off options. This approach is applied to estimate the π-TSP effect on the Fermi-contact contribution to spin-spin couplings and EPR hyperfine structure coupling constants. The π-TSP effect on the distribution of spin-density, spin-spin coupling pathways and pathways of EPR hyperfine couplings is demonstrated for benzene, naphthalene, 1,3,5,7,9-decapentaene and the 1,3,5,7,9-decapentaen-1-yl radical. The sign alternation of the spin-polarization transmitted by π-orbitals is explained in a theoretical framework based on perturbation theory. However, the delocalized nature of the π-system can interfere with the sign alternation in certain cases, two of which - the cyclobutadiene dication and the cyclooctatetraene dication - are examined, and an explanation for which is provided.
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Affiliation(s)
- Olga L Malkina
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská Cesta 9, SK-84536 Bratislava, Slovakia.
| | - Florian Lemken
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská Cesta 9, SK-84536 Bratislava, Slovakia.
| | - James R Asher
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská Cesta 9, SK-84536 Bratislava, Slovakia. .,Faculty of Natural Sciences, Department of Inorganic Chemistry, Comenius University, Mlynská dolina CH2, SK-84215 Bratislava, Slovakia
| | - Jean-Cyrille Hierso
- Institut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB, UMR CNRS 6302), Université Bourgogne-Franche-Comté (UBFC), 9 Avenue Alain Savary, 21078 Dijon Cedex, France
| | - Michael Bűhl
- EaStChem School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, UK
| | - Vladimir G Malkin
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská Cesta 9, SK-84536 Bratislava, Slovakia.
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4
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Abstract
Kohn–Sham density-functional theory (DFT), the predominant framework for electronic structure computations in chemistry today, has undergone considerable evolution in the past few decades. The earliest DFT approximations were based on uniform electron gas models completely free of empirical parameters. Tremendous improvements were made by incorporating density gradients and a small number of parameters, typically one or two, obtained from fits to atomic data. Incorporation of exact exchange and fitting to molecular data, such as experimental heats of formation, allowed even further improvements. This, however, opened a Pandora’s Box of fitting possibilities, given the limitless choices of chemical reactions that can be fit. The result is a recent explosion of DFT approximations empirically fit to hundreds, or thousands, of chemical reference data. These fitted density functionals may contain several dozen empirical parameters. What has been lost in this fitting trend is physical modeling based on theory. In this work, we present a density functional comprising our best efforts to model exchange–correlation in DFT using good theory. We compare its performance to that of heavily fit density functionals using the GMTKN55 chemical reference data of Goerigk and co-workers [Phys. Chem. Chem. Phys. 19, 32184 (2017)]. Our density-functional theory, using only a handful of physically motivated pre-factors, competes with the best heavily fit Kohn–Sham functionals in the literature.
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Affiliation(s)
- Axel D. Becke
- Department of Chemistry, Dalhousie University, 6274 Coburg Road, P.O. Box 15000, Halifax, Nova Scotia B3H 4R2, Canada
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5
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Effect of Lattice Substitution on Adsorption of Hexavalent Chromium by Montmorillonite, Nontronite, and Beidellite. MINERALS 2021. [DOI: 10.3390/min11121407] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
This work aims to evaluate the effect of lattice substitution on adsorption of hexavalent chromium by three kinds of typical clay minerals, and its common isomorph via experiments and calculations were performed based on density functional theory. The experiments (25 °C, 4 h, pH = 4 and without stirring) confirmed an order of adsorption capacity as follows: Montmorillonite (12 mg/g) > Nontronite (9 mg/g) > Beidellite (8 mg/g). Accordingly, the Mulliken populations, density of states, and band structures of the mineral models with the structural Al, Mg, Fe(II), Fe(III), and Al (in tetrahedrons) on behalf of five species of isomorph were calculated. The calculation results explain the differences between hexavalent chromium adsorption capacity of five kinds of isomorph by means of atom, key populations, overlapping valence electron orbitals, and the variation of energy band. However, no overlapping orbitals were observed in the adsorption system with structural Mg. It is implied that the structural Mg has little influence of hexavalent chromium adsorption. In conclusion, our study contributes to achieving a better understanding of modified clay minerals materials applications.
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6
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Blaško M, Pašteka LF, Urban M. DFT Functionals for Modeling of Polyethylene Chains Cross-Linked by Metal Atoms. DLPNO-CCSD(T) Benchmark Calculations. J Phys Chem A 2021; 125:7382-7395. [PMID: 34428051 DOI: 10.1021/acs.jpca.1c04793] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Density functional theory (DFT) functionals for calculations of binding energies (BEs) of the polyethylene (PE) chains cross-linked by selected metal atoms (M) are benchmarked against DLPNO-CCSD(T) and DLPNO-CCSD(T1) data. PEX-M-PEX complexes as compared with plain parallel PEX···PEX chains with X = 3-9 carbon atoms are model species characterized by a cooperative effect of covalent C-M-C bonds and interchain dispersion interactions. The accuracy of DLPNO-CC methods was assessed by a comparison of BEs with the canonical CCSD(T) results for small PE3-M-PE3 complexes. Functionals for PEX···PEX and closed-shell PEX-M-PEX complexes (M = Be, Mg, Zn) were benchmarked against DLPNO-CCSD(T) BEs; open-shell complexes (M = Li, Ag, Au) were benchmarked against the DLPNO-CCSD(T1) method with iterative triples. Three dispersion corrections were combined with 25 DFT functionals for calculations of BEs with respect to PEX-M and PEX fragments employing def2-TZVPP and def2-QZVPP basis sets. Accuracy to within 5% for the closed-shell PEX-M-PEX complexes was achieved with five functionals. Less accurate are functionals for the open-shell PEX-M-PEX complexes; only two functionals deviate by less than 15% from DLPNO-CCSD(T1). Particularly problematic were PEX-Li-PEX complexes. A reasonable overall performance across all complexes in terms of the mean absolute percentage error is found for the range-separated hybrid functionals ωB97X-D3 and CAM-B3LYP/D3(BJ)-ABC.
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Affiliation(s)
- Martin Blaško
- FunGlass, A. Dubček University of Trenčín, Študentská 2, 911 50 Trenčín, Slovakia
| | - Lukáš F Pašteka
- Department of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 84215 Bratislava, Slovakia
| | - Miroslav Urban
- Department of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 84215 Bratislava, Slovakia
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7
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Mohaček-Grošev V, Đuroković M, Maksimović A. Combining Raman Spectroscopy, DFT Calculations, and Atomic Force Microscopy in the Study of Clinker Materials. MATERIALS (BASEL, SWITZERLAND) 2021; 14:3648. [PMID: 34208897 PMCID: PMC8269705 DOI: 10.3390/ma14133648] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 06/18/2021] [Accepted: 06/24/2021] [Indexed: 11/18/2022]
Abstract
Raman spectroscopy and Raman mapping analysis, combined with density functional theory calculations were applied to the problem of differentiating similar clinker materials such as alite and belite. The Portland cement clinker 217 (further: clinker) was analysed using colocalised Raman mapping and atomic force microscopy mapping, which provided both spatial and chemical information simultaneously. The main constituents found in the clinker were alite, belite, portlandite, amorphous calcium carbonate, and gypsum. Since phonon bands of alite and belite greatly overlap, and their distinction is important for the hydration process during cement setting, we provided the calculated phonon density of states for alite Ca3SiO5 (Pc structure) and belite Ca2SiO4 (β P21/n structure) here for the first time. Both calculated phonon densities have similar distribution of phonon modes, with a gap between 560 and 810 cm-1. A comparison of the calculated phonon frequencies for Ca3SiO5 and Ca2SiO4 shows that the lowest calculated phonon frequency of β-Ca2SiO4 lies at 102 cm-1, while for Pc alite the lowest phonon frequency is predicted at 27 cm-1. Low frequency Raman spectroscopy could therefore be used for a clearer distinction of these two species in a clinker material.
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Affiliation(s)
- Vlasta Mohaček-Grošev
- Centre of Excellence for Advanced Materials and Sensing Devices, Ruđer Bošković Institute, Bijenička Cesta 54, 10000 Zagreb, Croatia;
| | | | - Aleksandar Maksimović
- Centre of Excellence for Advanced Materials and Sensing Devices, Ruđer Bošković Institute, Bijenička Cesta 54, 10000 Zagreb, Croatia;
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8
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Comparative Hybrid Hartree-Fock-DFT Calculations of WO2-Terminated Cubic WO3 as Well as SrTiO3, BaTiO3, PbTiO3 and CaTiO3 (001) Surfaces. CRYSTALS 2021. [DOI: 10.3390/cryst11040455] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
We performed, to the best of our knowledge, the world’s first first-principles calculations for the WO2-terminated cubic WO3 (001) surface and analyzed the systematic trends in the WO3, SrTiO3, BaTiO3, PbTiO3 and CaTiO3 (001) surface ab initio calculations. According to our first principles calculations, all WO2 or TiO2-terminated WO3, SrTiO3, BaTiO3, PbTiO3 and CaZrO3 (001) surface upper-layer atoms relax inwards towards the crystal bulk, while all second-layer atoms relax upwards. The only two exceptions are outward relaxations of first layer WO2 and TiO2-terminated WO3 and PbTiO3 (001) surface O atoms. The WO2 or TiO2-terminated WO3, SrTiO3, BaTiO3, PbTiO3 and CaTiO3 (001) surface-band gaps at the Γ–Γ point are smaller than their respective bulk-band gaps. The Ti–O chemical bond populations in the SrTiO3, BaTiO3, PbTiO3 and CaTiO3 bulk are smaller than those near the TiO2-terminated (001) surfaces. Conversely, the W–O chemical bond population in the WO3 bulk is larger than near the WO2-terminated WO3 (001) surface.
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9
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Moto Ongagna J, Tamafo Fouegue AD, Ateba Amana B, Mouzong D'ambassa G, Zobo Mfomo J, Mbaze Meva'A L, Bikele Mama D. B3LYP, M06 and B3PW91 DFT assignment of nd 8 metal-bis-(N-heterocyclic carbene) complexes. J Mol Model 2020; 26:246. [PMID: 32827077 DOI: 10.1007/s00894-020-04500-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Accepted: 08/03/2020] [Indexed: 10/23/2022]
Abstract
This paper is focused on the examination of the bonding properties of a series of [M(NHC)2X2] (M = nd8 transition metal; X = Cl, Br and I) complexes in normal, abnormal and mixed C∩C coordination modes. Structures have been optimised in gas phase using B3LYP, M06 and P3BW91 functionals. Two basis sets have been used: the LanL2DZ and a mixed basis set (LanL2DZ for nd8 transition metals as well as halogen atoms and 6-311+G(d,p) for other atoms). Results obtained indicate that the B3PW91 bond distances are closer to experimental data. The complexation energies obtained for each binding mode increase in the order: Ni2+ < Pd2+ < Pt2+, independently of the halogen atom adopted. From the Quantum Theory of Atoms in Molecule (QTAIM) approach, the instability has been found to follow this trend: M - X < M - C. The analysis of metal-ligand interactions using the natural bond orbital (NBO) revealed that the strongest metal-ligand interactions are observed in the normal binding mode. The NCH → MX2 donation terms were found to be interestingly predominant compared with back donation ones in the complexes studied, except in Pt chloride ones. The contribution of electrostatic interaction energy between the above fragments (∆Eelstat term) is in the range 57.48-63.95% traducing the fact that the interactions are mostly electrostatic. Graphical abstract.
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Affiliation(s)
- Jean Moto Ongagna
- Computational and Theoretical Chemistry Unit, Department of Chemistry, Faculty of Science, University of Douala, P.O. Box 24157, Douala, Cameroon
| | - Aymard Didier Tamafo Fouegue
- Department of Chemistry, Higher Teacher Training College Bertoua, University of Ngaoundere, P.O Box. 652, Bertoua, Cameroon
| | - Baruch Ateba Amana
- Computational and Theoretical Chemistry Unit, Department of Chemistry, Faculty of Science, University of Douala, P.O. Box 24157, Douala, Cameroon
| | - Gaël Mouzong D'ambassa
- Computational and Theoretical Chemistry Unit, Department of Chemistry, Faculty of Science, University of Douala, P.O. Box 24157, Douala, Cameroon
| | - Joseph Zobo Mfomo
- Department of Forestry and Wood Engineering, Advanced Training College for Technical Education, University of Douala, Douala, Cameroon
| | - Luc Mbaze Meva'A
- Computational and Theoretical Chemistry Unit, Department of Chemistry, Faculty of Science, University of Douala, P.O. Box 24157, Douala, Cameroon
| | - Désiré Bikele Mama
- Computational and Theoretical Chemistry Unit, Department of Chemistry, Faculty of Science, University of Douala, P.O. Box 24157, Douala, Cameroon.
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10
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Mukherjee S, Jung SW, Weber SF, Xu C, Qian D, Xu X, Biswas PK, Kim TK, Chapon LC, Watson MD, Neaton JB, Cacho C. Fermi-crossing Type-II Dirac fermions and topological surface states in NiTe 2. Sci Rep 2020; 10:12957. [PMID: 32737391 PMCID: PMC7395785 DOI: 10.1038/s41598-020-69926-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 07/21/2020] [Indexed: 11/23/2022] Open
Abstract
Transition-metal dichalcogenides (TMDs) offer an ideal platform to experimentally realize Dirac fermions. However, typically these exotic quasiparticles are located far away from the Fermi level, limiting the contribution of Dirac-like carriers to the transport properties. Here we show that NiTe2 hosts both bulk Type-II Dirac points and topological surface states. The underlying mechanism is shared with other TMDs and based on the generic topological character of the Te p-orbital manifold. However, unique to NiTe2, a significant contribution of Ni d orbital states shifts the energy of the Type-II Dirac point close to the Fermi level. In addition, one of the topological surface states intersects the Fermi energy and exhibits a remarkably large spin splitting of 120 meV. Our results establish NiTe2 as an exciting candidate for next-generation spintronics devices.
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Affiliation(s)
- Saumya Mukherjee
- Diamond Light Source, Oxfordshire, OX11 0DE, UK. .,Clarendon Laboratory, Department of Physics, University of Oxford, Parks Road, Oxford, OX1 3PU, UK.
| | | | - Sophie F Weber
- Department of Physics, University of California, Berkeley, CA, 94720, USA.,Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Chunqiang Xu
- Department of Applied Physics, Zhejiang University of Technology, Hangzhou, 310023, China
| | - Dong Qian
- School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Xiaofeng Xu
- Department of Applied Physics, Zhejiang University of Technology, Hangzhou, 310023, China
| | - Pabitra K Biswas
- ISIS Facility, STFC Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Oxfordshire, OX11 0QX, UK
| | - Timur K Kim
- Diamond Light Source, Oxfordshire, OX11 0DE, UK
| | | | | | - Jeffrey B Neaton
- Department of Physics, University of California, Berkeley, CA, 94720, USA.,Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.,Kavli Energy Nanosciences Institute, Berkeley, CA, 94720, USA
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11
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Ricciarelli D, Belpassi L, Harvey JN, Belanzoni P. Spin-Forbidden Reactivity of Transition Metal Oxo Species: Exploring the Potential Energy Surfaces. Chemistry 2020; 26:3080-3089. [PMID: 31846105 DOI: 10.1002/chem.201904314] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Indexed: 11/06/2022]
Abstract
Spin-forbidden reactions are frequently encountered when transition metal oxo species are involved, particularly in oxygen transfer reactivity. The computational study of such reactions is challenging, because reactants and products are located on different spin potential energy surfaces (PESs). One possible approach to describe these reactions is the so-called minimum energy crossing point (MECP) between the diabatic reactants and products PESs. Alternatively, inclusion of spin-orbit coupling (SOC) effects allows to locate a saddle point on a single adiabatic PES (TS SOC). The TS SOC approach is rarely applied because of its high computational cost. Recently evidence for a TS SOC impact on significantly lowering the activation barrier in dioxygen addition to a carbene-gold(I)-hydride complex reaction (Chem. Sci. 2016, 7, 7034-7039) or even on predicting a qualitatively different reaction mechanism in mercury methylation by cobalt corrinoid (Angew. Chem. Int. Ed. 2016, 55, 11503-11506) has been put forward. Using MECP and TS SOC approaches a systematic analysis is provided here of three prototypical transition metal oxo spin-forbidden processes to investigate their implications on reactivity. Cycloaddition of ethylene to chromyl chloride (CrO2 Cl2 +C2 H4 ), iron oxide cation insertion into the hydrogen molecule (FeO+ +H2 ) and H-abstraction from toluene by a MnV -oxo-porphyrin cation (MnOP(H2 O)+ +C6 H5 CH3 ) are case studies. For all these processes the MECP and TS SOC results are compared, which show that the spin-forbidden reactivity of transition metal oxo species can be safely described by a MECP approach, at least for the first-row transition metals investigated here, where the spin-orbit coupling is relatively weak. However, for the Mn-oxo reactivity, the MECP and TS SOC have been found to be crucial for a correct description of the reaction mechanism. In particular, the TS SOC approach allows to straightforwardly explore detailed features of the adiabatic potential energy surface which in principle could affect the overall reaction rate in cases where the involved diabatic PESs are tricky.
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Affiliation(s)
- Damiano Ricciarelli
- Department of Chemistry, Biology and Biotechnology, University of Perugia, via Elce di Sotto 8, 06123, Perugia, Italy
| | - Leonardo Belpassi
- CNR Institute of Chemical Science and Technologies "Giulio Natta" (CNR-SCITEC), via Elce di Sotto 8, 06123, Perugia, Italy.,Consortium for Computational Molecular and Materials Sciences (CMS)2, via Elce di Sotto 8, 06123, Perugia, Italy
| | - Jeremy N Harvey
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001, Leuven, Belgium
| | - Paola Belanzoni
- Department of Chemistry, Biology and Biotechnology, University of Perugia, via Elce di Sotto 8, 06123, Perugia, Italy.,CNR Institute of Chemical Science and Technologies "Giulio Natta" (CNR-SCITEC), via Elce di Sotto 8, 06123, Perugia, Italy.,Consortium for Computational Molecular and Materials Sciences (CMS)2, via Elce di Sotto 8, 06123, Perugia, Italy
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12
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Abstract
The molecular structures of 12 azabenzenes have been optimized with the Gaussian09 package at the level of coupled cluster singles and doubles with the basis set cc-pVTZ. The optimized geometry of each is used in the ADF13 program for the calculation of the vertical ionization energies of all the electrons. For both outer-shell and inner-shell valence electrons, the 2009 method of ΔPBE0(SAOP) is used, whereas the 1999 method of ΔPW86PW91 + Crel is employed for the core electrons. For degenerate orbitals, the alternative method chosen is to use localized orbitals, keeping the integer number of electrons, while giving up proper symmetry, rather than to keep symmetry with fractional electrons. The success of the computed results of valence ionization potentials of pyridine and the diazabenzenes gives confidence for the predicted values for the higher azabenzenes. The calculated results for core-electron binding energies provide incentive to experimentalists to measure them with X-ray photoelectron spectrometers and (or) synchrotron facilities.
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Affiliation(s)
- Delano P. Chong
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada
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13
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Dzialkowski K, Gehlhaar A, Wölper C, Auer AA, Schulz S. Structure and Reactivity of 1,8-Bis(naphthalenediyl)dipnictanes. Organometallics 2019. [DOI: 10.1021/acs.organomet.9b00269] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kevin Dzialkowski
- Institute for Inorganic Chemistry and Center for Nanointegration Duisburg-Essen (Cenide), University of Duisburg-Essen, Universitätsstraße 5-7, D-45117 Essen, Germany
| | - Alexander Gehlhaar
- Institute for Inorganic Chemistry and Center for Nanointegration Duisburg-Essen (Cenide), University of Duisburg-Essen, Universitätsstraße 5-7, D-45117 Essen, Germany
| | - Christoph Wölper
- Institute for Inorganic Chemistry and Center for Nanointegration Duisburg-Essen (Cenide), University of Duisburg-Essen, Universitätsstraße 5-7, D-45117 Essen, Germany
| | - Alexander A. Auer
- Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany
| | - Stephan Schulz
- Institute for Inorganic Chemistry and Center for Nanointegration Duisburg-Essen (Cenide), University of Duisburg-Essen, Universitätsstraße 5-7, D-45117 Essen, Germany
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14
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Avelar J, Bruix A, Garza J, Vargas R. van der Waals exchange-correlation functionals over bulk and surface properties of transition metals. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2019; 31:315501. [PMID: 30978711 DOI: 10.1088/1361-648x/ab18ea] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The correct description of van der Waals (vdW) interaction forces is required for accurately describing dispersion bonded systems. Several approaches have been proposed to include London dispersion in density functional theory exchange-correlation functionals, where the family of so-called van der Waals (vdW-DF) exchange-correlation functionals have shown a better performance than local or semi local exchange-correlation functionals for describing molecular adsorption on metals. Despite the numerous benchmarks performed with these functionals, their performance in predicting bulk properties of transition metals has hitherto not been investigated in detail. We have therefore tested five vdW-DF exchange-correlation functionals, vdW-DF2, optPBE-vdW, BEEF-vdW, optB88-vdW and C09 x -vdW to assess their performance in the prediction of lattice constants, bulk moduli, cohesive energies and surface energies of bulk Ni, Cu, Rh, Pd, Ag, Ir, Pt and Au (in fcc crystal structure). These transition metals are commonly used for benchmarking density functionals because they are important for applications in catalysis. The results are compared with experimental data and the PBE exchange-correlation functional. We found that both the optB88-vdW and the C09 x -vdW exchange-correlation functionals estimate all properties with high accuracy, in better agreement with experimental data than PBE and other considered vdW functionals. The C09 x -vdW functional clearly outperforms all other exchange-correlation functionals for surface energies for the (1 1 1) termination of different metals. We have also evaluated the interatomic electron density emerging from different functionals, and concluded that the observed differences are a result of the predicted lattice parameter, rather than a direct consequence of the functional form. Plane-wave and real-space grid-based expansions of the electron density are also compared, revealing good agreement between the two approaches for lattice parameters, cohesive energies, and surface energies, but more severe differences in bulk moduli. On the basis of our results, we recommend using the C09 x -vdW for studying bulk properties and surface energies of transition metals.
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Affiliation(s)
- Joana Avelar
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col, Vicentina, Iztapalapa, C.P., 09340 Ciudad de México, Mexico
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Ricciarelli D, Phung QM, Belpassi L, Harvey JN, Belanzoni P. Understanding the Reactivity of Mn-Oxo Porphyrins for Substrate Hydroxylation: Theoretical Predictions and Experimental Evidence Reconciled. Inorg Chem 2019; 58:7345-7356. [PMID: 31117625 DOI: 10.1021/acs.inorgchem.9b00476] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The Mn-oxo porphyrin (MnOP) mechanism for substrate hydroxylation is computationally studied with the aim to better understand reactivity in these systems. Theoretical studies suggest Mn(V)OP species to be very reactive intermediates with thermally accessible reaction barriers represented by low-spin/high-spin-crossover occurring in the Mn(V)OP oxidant, and kinetics for selected Mn(V)OP species indeed find high reactivity. On the other hand, MnOP complexes lead to modest yields in hydroxylation reactions of several different substrates, implying low rate constants and high reaction barriers. The resolution of this inconsistency is very important to understand the reactivity of Mn-oxo porphyrins and to improve the catalytic conditions. In this work we use the toluene hydroxylation by the Mn(V)OP(H2O)+ complex as a case study to gain deep insight into the reaction mechanism. Minimum energy crossing point (MECP) results on the H-abstraction process from toluene indicate a first crossover from a singlet to a triplet spin state of the Mn(V)OP(H2O)+ species with a thermally accessible barrier, followed by a very facile H-abstraction by the triplet complex. Issues concerning (i) the validation of the level of the density functional theory employed (BP86) to describe the singlet-triplet energy gap in the Mn(V)OP(H2O)+ system versus highly accurate DMRG-CASPT2/CC calculations, and (ii) the influence of the axial ligand (X = none, Cl-, CH3CN, OH-, and O2-) on MnOP reactivity, which models the different experimental conditions, are addressed. The ligand trans influence mainly controls the reactivity through the singlet-triplet energy gap modulation, with the porphyrin ruffling distortion also finely tuning it. Finally, a stepwise model for the H-abstraction process is proposed which allows a direct comparison between the calculated and experimentally measured Gibbs free activation energy barriers ( Zhang et al. J. Am. Chem. Soc. 2005 , 127 , 6573 - 6582 ). The low yields in catalysis are shown not to be due to low reactivity of Mn(V).
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Affiliation(s)
| | - Quan Manh Phung
- Department of Chemistry , KU Leuven , Celestijnenlaan 200F , B-3001 Leuven , Belgium.,Institute of Transformative Bio-Molecules (WPI-ITbM) , Nagoya University , Chikusa , Nagoya 464-8602 , Japan
| | - Leonardo Belpassi
- Consortium for Computational Molecular and Materials Sciences (CMS)2 , via Elce di Sotto 8 , 06123 Perugia , Italy
| | - Jeremy N Harvey
- Department of Chemistry , KU Leuven , Celestijnenlaan 200F , B-3001 Leuven , Belgium
| | - Paola Belanzoni
- Consortium for Computational Molecular and Materials Sciences (CMS)2 , via Elce di Sotto 8 , 06123 Perugia , Italy
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16
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Heifets E, Kotomin EA, Bagaturyants AA, Maier J. Thermodynamic stability of non-stoichiometric SrFeO 3-δ: a hybrid DFT study. Phys Chem Chem Phys 2019; 21:3918-3931. [PMID: 30702110 DOI: 10.1039/c8cp07117a] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
SrFeO3-δ is a mixed ionic-electronic conductor with a complex magnetic structure that reveals a colossal magnetoresistance effect. This material and its solid solutions are attractive for various spintronic, catalytic and electrochemical applications, including cathodes for solid oxide fuel cells and permeation membranes. Its properties strongly depend on oxygen non-stoichiometry. Ab initio hybrid functional approach was applied herein to study the thermodynamic stability of a series of SrFeO3-δ compositions with several non-stoichiometries δ, ranging from 0 to 0.5 (SrFeO3-SrFeO2.875-SrFeO2.75-SrFeO2.5) as a function of temperature and oxygen pressure. The results obtained by two approaches, in which either (i) all electrons at Fe atoms explicitly described or (ii) inner core electrons at Fe atoms are replaced by effective core potential, are compared. Based on our calculations, phase diagrams were constructed, allowing the determination of environmental conditions for the existence of stable phases. It is shown that (within an employed model) only the SrFeO2.5 phase appears to be stable. The stability region for this phase was re-drawn on the contour map of oxygen chemical potential, presented as a function of temperature and oxygen partial pressure. A similar analysis was also performed using experimental Gibbs energies of perovskite formation from the elements. The present modelling strongly suggest a significant attraction between neutral oxygen vacancies. These vacancies are created during a series of the abovementioned SrFeO3-δ mutual transformations accompanied by oxygen release.
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Affiliation(s)
- Eugene Heifets
- Photochemistry Center, Federal Research Center "Crystallography and Photonics", Russian Academy of Sciences, Novatorov 7a, Moscow, 119421, Russia.
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Formalik F, Fischer M, Rogacka J, Firlej L, Kuchta B. Benchmarking of GGA density functionals for modeling structures of nanoporous, rigid and flexible MOFs. J Chem Phys 2018; 149:064110. [DOI: 10.1063/1.5030493] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Filip Formalik
- Group of Bioprocess and Biomedical Engineering, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Michael Fischer
- Crystallography Group, Department of Geosciences, University of Bremen, Klagenfurter Straße, 28359 Bremen, Germany
- MAPEX Center for Materials and Processes, University of Bremen, Bibliotheksstraße 1, 28359 Bremen, Germany
| | - Justyna Rogacka
- Group of Bioprocess and Biomedical Engineering, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Lucyna Firlej
- Laboratoire Charles Coulomb (L2C), UMR 5221 CNRS-Université de Montpellier, F-34095 Montpellier, France
| | - Bogdan Kuchta
- Group of Bioprocess and Biomedical Engineering, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
- Laboratoire MADIREL, Aix-Marseille Université, CNRS UMR7246, 13396 Marseille, France
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18
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Jacob D, Kurth S. Many-Body Spectral Functions from Steady State Density Functional Theory. NANO LETTERS 2018; 18:2086-2090. [PMID: 29437404 DOI: 10.1021/acs.nanolett.8b00255] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We propose a scheme to extract the many-body spectral function of an interacting many-electron system from an equilibrium density functional theory (DFT) calculation. To this end we devise an ideal scanning tunneling microscope (STM) setup and employ the recently proposed steady-state DFT formalism (i-DFT) which allows one to calculate the steady current through a nanoscopic region coupled to two biased electrodes. In our setup, one of the electrodes serves as a probe ("STM tip"), which is weakly coupled to the system we want to measure. In the ideal STM limit of vanishing coupling to the tip, the system is restored to quasi-equilibrium and the normalized differential conductance yields the exact equilibrium many-body spectral function. Calculating this quantity from i-DFT, we derive an exact relation expressing the interacting spectral function in terms of the Kohn-Sham one. As illustrative examples, we apply our scheme to calculate the spectral functions of two nontrivial model systems, namely the single Anderson impurity model and the Constant Interaction Model.
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Affiliation(s)
- David Jacob
- Nano-Bio Spectroscopy Group and European Theoretical Spectroscopy Facility (ETSF), Departamento de Física de Materiales , Universidad del País Vasco UPV/EHU , Avenida Tolosa 72 , E-20018 San Sebastián , Spain
- IKERBASQUE, Basque Foundation for Science , María Díaz de Haro 3 , E-48013 Bilbao , Spain
| | - Stefan Kurth
- Nano-Bio Spectroscopy Group and European Theoretical Spectroscopy Facility (ETSF), Departamento de Física de Materiales , Universidad del País Vasco UPV/EHU , Avenida Tolosa 72 , E-20018 San Sebastián , Spain
- IKERBASQUE, Basque Foundation for Science , María Díaz de Haro 3 , E-48013 Bilbao , Spain
- Donostia International Physics Center (DIPC) , Paseo Manuel de Lardizabal 4 , E-20018 San Sebastián , Spain
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19
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First-principles calculations on Fe-Pt nanoclusters of various morphologies. Sci Rep 2017; 7:10579. [PMID: 28874775 PMCID: PMC5585362 DOI: 10.1038/s41598-017-11236-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Accepted: 08/18/2017] [Indexed: 11/15/2022] Open
Abstract
Bimetallic FePt nanoparticles with L10 structure are attracting a lot of attention due to their high magnetocrystalline anisotropy and high coercivity what makes them potential material for storage of ultra-high density magnetic data. FePt nanoclusters are considered also as nanocatalysts for growth of carbon nanotubes of different chiralities. Using the DFT-LCAO CRYSTAL14 code, we have performed large-scale spin-polarized calculations on 19 different polyhedral structures of FePt nanoparticles in order to estimate which icosahedral or hcp-structured morphology is the energetically more preferable. Surface energy calculations of all aforementioned nanoparticles indicate that the global minimum corresponds to the nanocluster possessing the icosahedron “onion-like” structure and Fe43Pt104 morphology where the outer layer consists of Pt atoms. The presence of the Pt-enriched layer around FePt core explains high oxidation resistance and environmental stability, both observed experimentally.
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Malkin VG, Malkina OL, Zhidomirov GM. Visualization of Electron Paramagnetic Resonance Hyperfine Structure Coupling Pathways. J Phys Chem A 2017; 121:3580-3587. [PMID: 28410441 DOI: 10.1021/acs.jpca.7b01833] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The close relation between the EPR hyperfine coupling constant and NMR indirect spin-spin coupling constant is well-known. For example, the Karplus-type dependence of hyperfine constants on the dihedral angle, originally proposed for NMR spin-spin coupling, is widely used in pNMR studies. In the present work we propose a new tool for visualization of hyperfine coupling pathways based on our experience with visualization of NMR indirect spin-spin couplings. The plotted 3D-function is the difference between the total electron densities when the magnetic moment of the nucleus of interest changes its sign and as such is an observable from the physical point of view. It has been shown that it is proportional to the linear response of the spin density to the nuclear spin (i.e., magnetic moment). In contrast to the widely used visualization of spin density, our new approach depicts only the part of the electron cloud of a molecule that is affected by the interaction of the unpaired electron(s) with the desired nuclear magnetic moment. Because visualization of NMR spin-spin couplings and hyperfine interaction is based on the same ideas and done using similar techniques, it allows a direct comparison of the corresponding pathways for the two phenomena so as to analyze their resemblance and/or dissimilarity.
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Affiliation(s)
- Vladimir G Malkin
- Institute of Inorganic Chemistry, Slovak Academy of Sciences , Dúbravská cesta 9, SK-84536 Bratislava, Slovakia
| | - Olga L Malkina
- Institute of Inorganic Chemistry, Slovak Academy of Sciences , Dúbravská cesta 9, SK-84536 Bratislava, Slovakia.,Department of Inorganic Chemistry, Comenius University , SK-84215 Bratislava, Slovakia
| | - Georgy M Zhidomirov
- G. K. Boreskov Institute of Catalysis, Siberian Branch of the Russian Academy of Sciences , Prospect Lavrentieva 5, 630090 Novosibirsk, Russia
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21
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Heifets E, Kotomin EA, Bagaturyants AA, Maier J. Thermodynamic stability of stoichiometric LaFeO 3 and BiFeO 3: a hybrid DFT study. Phys Chem Chem Phys 2017; 19:3738-3755. [PMID: 28098281 DOI: 10.1039/c6cp07986e] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
BiFeO3 perovskite attracts great attention due to its multiferroic properties and potential use as a parent material for Bi1-xSrxFeO3-δ and Bi1-xSrxFe1-yCoyO3-δ solid solutions in intermediate temperature cathodes of oxide fuel cells. Another iron-based LaFeO3 perovskite is the end member for well-known solid solutions (La1-xSrxFe1-yCoyO3-δ) used for oxide fuel cells and other electrochemical devices. In this study an ab initio hybrid functional approach was used for the study of the thermodynamic stability of both LaFeO3 and BiFeO3 with respect to decompositions to binary oxides and to elements, as a function of temperature and oxygen pressure. The localized (LCAO) basis sets describing the crystalline electron wave functions were carefully re-optimized within the CRYSTAL09 computer code. The results obtained by considering Fe as an all-electron atom and within the effective core potential technique are compared in detail. Based on our calculations, the phase diagrams were constructed allowing us to predict the stability region of stoichiometric materials in terms of atomic chemical potentials. This permits determining the environmental conditions for the existence of stable BiFeO3 and LaFeO3. These conditions were presented as contour maps of oxygen atoms' chemical potential as a function of temperature and partial pressure of oxygen gas. A similar analysis was also performed using the experimental Gibbs energies of formation. The obtained phase diagrams and contour maps are compared with the calculated ones.
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Affiliation(s)
- Eugene Heifets
- Max Planck Institute for Solid State Research, Heisenbergstr. 1, Stuttgart 70569, Germany.
| | - Eugene A Kotomin
- Max Planck Institute for Solid State Research, Heisenbergstr. 1, Stuttgart 70569, Germany. and Institute for Solid State Physics, The University of Latvia, Riga, 8 Kengaraga str., Riga 1063, Latvia
| | - Alexander A Bagaturyants
- National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), Kashirskoye shosse 31, Moscow 115409, Russia and Photochemistry Center RAS Federal State Institution, Federal Research Center Crystallography and Photonics Russian Academy of Science, 7a Novatorov St., Moscow, 119421, Russia
| | - Joachim Maier
- Max Planck Institute for Solid State Research, Heisenbergstr. 1, Stuttgart 70569, Germany.
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22
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Gaggioli CA, Belpassi L, Tarantelli F, Harvey JN, Belanzoni P. The ligand effect on the oxidative addition of dioxygen to gold(i)–hydride complexes. Dalton Trans 2017; 46:11679-11690. [DOI: 10.1039/c7dt02170d] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The activation energy barriers of the O2 to [LAuH] oxidative addition, calculated by including spin–orbit coupling (SOC) effects, quantitatively correlate with the σ donation component of the L–AuH bond.
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Affiliation(s)
- Carlo Alberto Gaggioli
- Department of Chemistry
- Chemical Theory Center and Supercomputing Institute
- University of Minnesota
- Minneapolis
- USA
| | - Leonardo Belpassi
- Institute of Molecular Science and Technologies (ISTM) – CNR
- 06123 Perugia
- Italy
| | - Francesco Tarantelli
- Institute of Molecular Science and Technologies (ISTM) – CNR
- 06123 Perugia
- Italy
- Department of Chemistry
- Biology and Biotechnology
| | | | - Paola Belanzoni
- Institute of Molecular Science and Technologies (ISTM) – CNR
- 06123 Perugia
- Italy
- Department of Chemistry
- Biology and Biotechnology
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23
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Fritz M, Fernández-Serra M, Soler JM. Optimization of an exchange-correlation density functional for water. J Chem Phys 2016; 144:224101. [DOI: 10.1063/1.4953081] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Michelle Fritz
- Departamento de Física de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain
| | - Marivi Fernández-Serra
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794-3800, USA
- Institute for Advanced Computational Science, Stony Brook University, Stony Brook, New York 11794-3800, USA
| | - José M. Soler
- Departamento e Instituto de Física de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain
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24
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Choice of hybrid functional and basis set optimization to calculate the structural, electronic, mechanical, and vibrational properties of BaSnO3. Theor Chem Acc 2016. [DOI: 10.1007/s00214-016-1901-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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25
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Heifets E, Kotomin EA, Bagaturyants AA, Maier J. Ab Initio Study of BiFeO3: Thermodynamic Stability Conditions. J Phys Chem Lett 2015; 6:2847-2851. [PMID: 26266871 DOI: 10.1021/acs.jpclett.5b01071] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
BiFeO3 is investigated intensively, mainly as a multiferroic material. In this paper, the state-of-the-art ab initio hybrid functional approach with atomic basis sets was employed for a study of the stability range of BiFeO3 with respect to its decomposition into binary oxides and elementary metals, as a function of temperature and oxygen partial pressure. The calculated atomic and electronic structure of BiFeO3 was compared with previous LDA+U calculations using plane-wave basis sets. Based on performed calculations, the phase diagram was constructed, which allows us to predict the stability region of stoichiometric BiFeO3.
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Affiliation(s)
- E Heifets
- †Max Planck Institute for Solid State Research, 70569 Stuttgart, Germany
| | - E A Kotomin
- †Max Planck Institute for Solid State Research, 70569 Stuttgart, Germany
- ‡Institute for Solid State Physics, University of Latvia, Riga, LV-1586, Latvia
| | - A A Bagaturyants
- §Photochemistry Center, Russian Academy of Sciences, Moscow, Russia, 119991
- ∥National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), Moscow, Russia, 115409
| | - J Maier
- †Max Planck Institute for Solid State Research, 70569 Stuttgart, Germany
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26
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Becke AD. Perspective: Fifty years of density-functional theory in chemical physics. J Chem Phys 2015; 140:18A301. [PMID: 24832308 DOI: 10.1063/1.4869598] [Citation(s) in RCA: 648] [Impact Index Per Article: 72.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Since its formal inception in 1964-1965, Kohn-Sham density-functional theory (KS-DFT) has become the most popular electronic structure method in computational physics and chemistry. Its popularity stems from its beautifully simple conceptual framework and computational elegance. The rise of KS-DFT in chemical physics began in earnest in the mid 1980s, when crucial developments in its exchange-correlation term gave the theory predictive power competitive with well-developed wave-function methods. Today KS-DFT finds itself under increasing pressure to deliver higher and higher accuracy and to adapt to ever more challenging problems. If we are not mindful, however, these pressures may submerge the theory in the wave-function sea. KS-DFT might be lost. I am hopeful the Kohn-Sham philosophical, theoretical, and computational framework can be preserved. This Perspective outlines the history, basic concepts, and present status of KS-DFT in chemical physics, and offers suggestions for its future development.
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Affiliation(s)
- Axel D Becke
- Department of Chemistry, Dalhousie University, 6274 Coburg Rd., P.O. Box 15000, Halifax, Nova Scotia B3H 4R2, Canada
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27
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Tasinato N, Turchetto A, Stoppa P, Charmet AP, Giorgianni S. The energetic of (CH2F2)2 investigated by TDL IR spectroscopy and DFT computations: From collision induced relaxation of ro-vibrational transitions to non-covalent interactions. J Chem Phys 2015; 142:134310. [DOI: 10.1063/1.4916911] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Nicola Tasinato
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari Venezia, Calle Larga S. Marta 2137, I-30123 Venezia, Italy
| | - Arianna Turchetto
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari Venezia, Calle Larga S. Marta 2137, I-30123 Venezia, Italy
| | - Paolo Stoppa
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari Venezia, Calle Larga S. Marta 2137, I-30123 Venezia, Italy
| | - Andrea Pietropolli Charmet
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari Venezia, Calle Larga S. Marta 2137, I-30123 Venezia, Italy
| | - Santi Giorgianni
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca’ Foscari Venezia, Calle Larga S. Marta 2137, I-30123 Venezia, Italy
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28
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George J, Reimann C, Deringer VL, Bredow T, Dronskowski R. On the DFT Ground State of Crystalline Bromine and Iodine. Chemphyschem 2015; 16:728-32. [DOI: 10.1002/cphc.201402890] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Indexed: 11/09/2022]
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Shayeghi A, Johnston RL, Schäfer R. Communication: Global minimum search of Ag 10+ with molecular beam optical spectroscopy. J Chem Phys 2014; 141:181104. [DOI: 10.1063/1.4901109] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Affiliation(s)
- A. Shayeghi
- Eduard-Zintl-Institut, Technische Universität Darmstadt, Alarich-Weiss-Straße 8, 64287 Darmstadt, Germany
| | - R. L. Johnston
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - R. Schäfer
- Eduard-Zintl-Institut, Technische Universität Darmstadt, Alarich-Weiss-Straße 8, 64287 Darmstadt, Germany
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31
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Ricca C, Ringuedé A, Cassir M, Adamo C, Labat F. A comprehensive DFT investigation of bulk and low-index surfaces of ZrO2polymorphs. J Comput Chem 2014; 36:9-21. [DOI: 10.1002/jcc.23761] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2014] [Revised: 09/29/2014] [Accepted: 10/01/2014] [Indexed: 02/04/2023]
Affiliation(s)
- Chiara Ricca
- PSL Research University, Chimie Paristech-CNRS, Institut de Recherche de Chimie de Paris; 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05 France
| | - Armelle Ringuedé
- PSL Research University, Chimie Paristech-CNRS, Institut de Recherche de Chimie de Paris; 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05 France
| | - Michel Cassir
- PSL Research University, Chimie Paristech-CNRS, Institut de Recherche de Chimie de Paris; 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05 France
| | - Carlo Adamo
- PSL Research University, Chimie Paristech-CNRS, Institut de Recherche de Chimie de Paris; 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05 France
- Institut Universitaire de France; 103 Bd Saint-Michel F-75005 Paris France
| | - Frederic Labat
- PSL Research University, Chimie Paristech-CNRS, Institut de Recherche de Chimie de Paris; 11 rue Pierre et Marie Curie, F-75231 Paris Cedex 05 France
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32
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Klüpfel S, Klüpfel P, Jónsson H. The effect of the Perdew-Zunger self-interaction correction to density functionals on the energetics of small molecules. J Chem Phys 2013; 137:124102. [PMID: 23020319 DOI: 10.1063/1.4752229] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Self-consistent calculations using the Perdew-Zunger self-interaction correction (PZ-SIC) to local density and gradient dependent energy functionals are presented for the binding energy and equilibrium geometry of small molecules as well as energy barriers of reactions. The effect of the correction is to reduce binding energy and bond lengths and increase activation energy barriers when bond breaking is involved. The accuracy of the corrected functionals varies strongly, the correction to the binding energy being too weak for the local density approximation but too strong for the gradient dependent functionals considered. For the Perdew, Burke, and Ernzerhof (PBE) functional, a scaling of the PZ-SIC by one half gives improved results on average for both binding energy and bond lengths. The PZ-SIC does not necessarily give more accurate total energy, but it can result in a better cancellation of errors. An essential aspect of these calculations is the use of complex orbitals. A restriction to real orbitals leads to less accurate results as was recently shown for atoms [S. Klüpfel, P. Klüpfel, and H. Jónsson, Phys. Rev. A 84, 050501 (2011)]. The molecular geometry of radicals can be strongly affected by PZ-SIC. An incorrect, non-linear structure of the C(2)H radical predicted by PBE is corrected by PZ-SIC. The CH(3) radical is correctly predicted to be planar when complex orbitals are used, while it is non-planar when the PZ-SIC calculation is restricted to real orbitals.
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Affiliation(s)
- Simon Klüpfel
- Science Institute of the University of Iceland, Reykjavík, Iceland
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Lucero MJ, Henderson TM, Scuseria GE. Improved semiconductor lattice parameters and band gaps from a middle-range screened hybrid exchange functional. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2012; 24:145504. [PMID: 22417942 DOI: 10.1088/0953-8984/24/14/145504] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
We show that the middle-range exchange-correlation hybrid of Henderson, Izmaylov, Scuseria and Savin (HISS) performs extremely well for elemental and binary semiconductors with narrow or visible spectrum band gaps, as well as some wider gap or more ionic systems used in devices. The lattice parameters are superior to those predicted by the screened hybrid functional of Heyd, Scuseria and Ernzerhof (HSE), and provide a significant improvement over the geometries predicted by typical semilocal functionals, yielding results competitive with PBEsol, which was specially tuned for solids. HISS also yields band gaps superior to those produced by functionals developed specifically for the solid state. Timings indicate that HISS is more computationally efficient than HSE, implying that the high quality lattice constants coupled with improved optical band gap predictions render HISS a useful adjunct to HSE in the modeling of geometry-sensitive semiconductors.
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Affiliation(s)
- M J Lucero
- Department of Chemistry, Rice University, Houston, TX 77005-1892, USA
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Olejniczak M, Bast R, Saue T, Pecul M. A simple scheme for magnetic balance in four-component relativistic Kohn–Sham calculations of nuclear magnetic resonance shielding constants in a Gaussian basis. J Chem Phys 2012; 136:014108. [DOI: 10.1063/1.3671390] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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35
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Mehmood F, Rankin RB, Greeley J, Curtiss LA. Trends in methanol decomposition on transition metal alloy clusters from scaling and Brønsted–Evans–Polanyi relationships. Phys Chem Chem Phys 2012; 14:8644-52. [DOI: 10.1039/c2cp00052k] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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36
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Schoeller WW, Niecke E. Theoretical design of the biradical character in 1,3-diphosphacyclobutanediyl and homologous structures. Phys Chem Chem Phys 2012; 14:2015-23. [DOI: 10.1039/c1cp23016f] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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37
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Steinmann SN, Corminboeuf C. Comprehensive Benchmarking of a Density-Dependent Dispersion Correction. J Chem Theory Comput 2011; 7:3567-77. [DOI: 10.1021/ct200602x] [Citation(s) in RCA: 333] [Impact Index Per Article: 25.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Stephan N. Steinmann
- Laboratory for Computational Molecular Design, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Clemence Corminboeuf
- Laboratory for Computational Molecular Design, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
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38
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Ohnishi YY, Hirata S. Hybrid coupled-cluster and perturbation method for extended systems of one-dimensional periodicity. J Chem Phys 2011; 135:094108. [DOI: 10.1063/1.3629843] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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39
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Vibration analysis of O–H stretching mode in Mg(OH)2, Ca(OH)2, LiOH, and NaOH by plane-wave pseudopotential DFT calculation. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2010.10.029] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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40
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Hülsen M, Dolg M, Link P, Ruschewitz U. Improved valence basis sets for divalent lanthanide 4f-in-core pseudopotentials. Theor Chem Acc 2010. [DOI: 10.1007/s00214-010-0855-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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41
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Csonka GI, Perdew JP, Ruzsinszky A. Global Hybrid Functionals: A Look at the Engine under the Hood. J Chem Theory Comput 2010. [DOI: 10.1021/ct100488v] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Gábor I. Csonka
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, H-1521 Budapest, Hungary and Department of Physics and Quantum Theory Group, Tulane University, New Orleans, Louisiana 70118, United States
| | - John P. Perdew
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, H-1521 Budapest, Hungary and Department of Physics and Quantum Theory Group, Tulane University, New Orleans, Louisiana 70118, United States
| | - Adrienn Ruzsinszky
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, H-1521 Budapest, Hungary and Department of Physics and Quantum Theory Group, Tulane University, New Orleans, Louisiana 70118, United States
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42
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Steinmann SN, Wodrich MD, Corminboeuf C. Overcoming systematic DFT errors for hydrocarbon reaction energies. Theor Chem Acc 2010. [DOI: 10.1007/s00214-010-0818-3] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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43
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Yue L, Jia R, Shi H, He X, Eglitis RI. First-Principles Calculations for the H Center in SrF2 Crystals. J Phys Chem A 2010; 114:8444-9. [DOI: 10.1021/jp104437n] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- L. Yue
- Fachbereich Physik, Universität Osnabrück, D-49069 Osnabrück, Germany, Department of Mathematics and Natural Sciences, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany, School of Science, Beijing Institute of Technology, 100081 Beijing, People’s Republic of China, and Institute of Solid State Physics, University of Latvia, 8 Kengaraga Str., Riga LV1067, Latvia
| | - R. Jia
- Fachbereich Physik, Universität Osnabrück, D-49069 Osnabrück, Germany, Department of Mathematics and Natural Sciences, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany, School of Science, Beijing Institute of Technology, 100081 Beijing, People’s Republic of China, and Institute of Solid State Physics, University of Latvia, 8 Kengaraga Str., Riga LV1067, Latvia
| | - H. Shi
- Fachbereich Physik, Universität Osnabrück, D-49069 Osnabrück, Germany, Department of Mathematics and Natural Sciences, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany, School of Science, Beijing Institute of Technology, 100081 Beijing, People’s Republic of China, and Institute of Solid State Physics, University of Latvia, 8 Kengaraga Str., Riga LV1067, Latvia
| | - X. He
- Fachbereich Physik, Universität Osnabrück, D-49069 Osnabrück, Germany, Department of Mathematics and Natural Sciences, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany, School of Science, Beijing Institute of Technology, 100081 Beijing, People’s Republic of China, and Institute of Solid State Physics, University of Latvia, 8 Kengaraga Str., Riga LV1067, Latvia
| | - R. I. Eglitis
- Fachbereich Physik, Universität Osnabrück, D-49069 Osnabrück, Germany, Department of Mathematics and Natural Sciences, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany, School of Science, Beijing Institute of Technology, 100081 Beijing, People’s Republic of China, and Institute of Solid State Physics, University of Latvia, 8 Kengaraga Str., Riga LV1067, Latvia
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44
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Steinmann SN, Corminboeuf C. A System-Dependent Density-Based Dispersion Correction. J Chem Theory Comput 2010; 6:1990-2001. [DOI: 10.1021/ct1001494] [Citation(s) in RCA: 121] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Stephan N. Steinmann
- Laboratory for Computational Molecular Design, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Clemence Corminboeuf
- Laboratory for Computational Molecular Design, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
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45
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Kannemann FO, Becke AD. van der Waals Interactions in Density-Functional Theory: Intermolecular Complexes. J Chem Theory Comput 2010. [DOI: 10.1021/ct900699r] [Citation(s) in RCA: 141] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Felix O. Kannemann
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
| | - Axel D. Becke
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4J3
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46
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Trambly de Laissardière G, Mayou D, Magaud L. Localization of dirac electrons in rotated graphene bilayers. NANO LETTERS 2010; 10:804-8. [PMID: 20121163 DOI: 10.1021/nl902948m] [Citation(s) in RCA: 170] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
For Dirac electrons the Klein paradox implies that the confinement is difficult to achieve with an electrostatic potential although it can be of great importance for graphene-based devices. Here, ab initio and tight-binding approaches are combined and show that the wave function of Dirac electrons can be localized in rotated graphene bilayers due to the Moire pattern. This localization of wave function is maximum in the limit of the small rotation angle between the two layers.
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Affiliation(s)
- G Trambly de Laissardière
- Laboratoire de Physique Theorique et Modelisation, Universite de Cergy-Pontoise-CNRS, F-95302 Cergy-Pontoise Cedex, France.
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Jia R, Shi H, Borstel G. The atomic and electronic structure of CaF2 and BaF2 crystals with H centers: a hybrid DFT calculation study. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2010; 22:055501. [PMID: 21386345 DOI: 10.1088/0953-8984/22/5/055501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Using the B3PW method we simulate the ground state of H center systems for CaF(2) and BaF(2) crystals. The energy difference between H centers with different orientations shows that the H center oriented in the [111] direction in alkaline earth fluorides is the most stable. We present the geometric relaxations of the neighboring atoms surrounding the H center. The combination energy of an H center and the formation energy of the related F-H pair in both alkaline earth fluorides are discussed. We also report the electronic structure of the H center systems. The effective charges and spins of the substitutional and interstitial fluorine atoms show that the hole is located at the interstitial fluorine. The band structures are presented. By studying the DOS sketches the constituents of the defect bands are clarified.
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Affiliation(s)
- Ran Jia
- Department of Mathematics and Natural Sciences, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany
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48
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Vela A, Medel V, Trickey SB. Variable Lieb–Oxford bound satisfaction in a generalized gradient exchange-correlation functional. J Chem Phys 2009; 130:244103. [DOI: 10.1063/1.3152713] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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49
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Matar S, Baraille I, Subramanian M. First principles studies of SnTiO3 perovskite as potential environmentally benign ferroelectric material. Chem Phys 2009. [DOI: 10.1016/j.chemphys.2008.11.002] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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50
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Henderson TM, Janesko BG, Scuseria GE. Range separation and local hybridization in density functional theory. J Phys Chem A 2008; 112:12530-42. [PMID: 19006280 PMCID: PMC4892865 DOI: 10.1021/jp806573k] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Kohn-Sham density functional theory has become a standard method for modeling energetic, spectroscopic, and chemical reactivity properties of large molecules and solids. Density functional theory provides a rigorous theoretical framework for modeling the many-body exchange-correlation effects that dominate the computational cost of traditional wave function approaches. The advent of hybrid exchange-correlation functionals which incorporate a fraction of nonlocal exact exchange has solidified the prominence of density functional theory within computational chemistry. Hybrids provide accurate treatments of properties such as thermochemistry and molecular geometry. But they also exhibit some rather spectacular failures, and often contain multiple empirical parameters. This article reviews our work on developing novel exchange-correlation functionals that build upon the successes of global hybrids. We focus on more flexible functional forms, including local and range-separated hybrid functionals, constructed to obey known exact constraints and (ideally) to incorporate a minimum of empirical parametrization. The article places our work within the context of some other new approximate density functionals and discusses prospects for future work.
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Affiliation(s)
- Thomas M. Henderson
- Department of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892
| | - Benjamin G. Janesko
- Department of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892
| | - Gustavo E. Scuseria
- Department of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005-1892
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