Time-delay autosynchronization control of defect turbulence in the cubic-quintic complex Ginzburg-Landau equation

Base pair opening in a damped helicoidal Joyeux-Buyukdagli model of DNA in an external force field

Upon the Joyeux-Buyukdagli model of DNA, the helicoidal interactions are introduced, and their effects on the dynamical behaviors of the molecule investigated. A theoretical framework for the analysis is presented in an external force field, taking into account Stokes and hydrodynamics viscous forces. In the semi-discrete approximation, the dynamics of the molecule is found governed by the cubic complex Ginzburg-Landau (CGL) equation. By choosing an appropriate decoupling ansatz, the cubic CGL equation is transformed into a nonlinear differential equation whose analytical solitary wave-like solutions can be explored by means of the direct method, which is more tractable in case where the form of soliton solutions is known. Based on this, a dissipative bright-like soliton solution is obtained. Numerical experiments have been done, and relevant results were brought out, such as the quantitative and qualitative influences of the helical interactions on the parameters of the traveling bubble. The important role-played by these interactions in the DNA biological processes is brought out, showing that depending on the wave number, their effects can increase, decrease, or keep constant the bubble angular frequency, velocity, amplitude, and width, as well as the energy involved by enzymes in the initiation of DNA biological processes. This can prevent some coding or reading errors and resulting genetic damages. Analytical predictions and numerical experiments were in good agreement.

Modulation instability in nonlinear metamaterials modeled by a cubic-quintic complex Ginzburg-Landau equation beyond the slowly varying envelope approximation

Considering the theory of electromagnetic waves from the Maxwell's equations, we introduce a (3+1)-dimensionsal cubic-quintic complex Ginzburg-Landau equation describing the dynamics of dissipative light bullets in nonlinear metamaterials. The model equation, which is derived beyond the slowly varying envelope approximation, includes the effects of diffraction, dispersion, loss, gain, cubic, and quintic nonlinearities, as well as cubic and quintic self-steepening effects. The modulational instability of the plane waves is studied both theoretically, using the linear stability analysis, and numerically, using direct simulations of the Fourier space of the proposed nonlinear wave equation, based on the Drude model. The linear theory predicts instability for any amplitude of the primary wave. Also, in the linear stability analysis, self-steepening effects of different orders are confronted and one discusses their effects on the behavior of the gain spectrum under both normal and anomalous group-velocity dispersion regimes. Analytical results are equally confronted to direct numerical simulations and fully agree with the predictions from the gain spectra. Modulational instability is manifested by clusters of solitons and multihump and dromion-like structures, whose emergence and features depend not only on system parameters, such as the cubic and quintic self-steepening coefficients, but also on the propagation distance under a suitable balance between nonlinear and dispersive effects.

Effects of nonlinear gradient terms on the defect turbulence regime in weakly dissipative systems

We investigate the behavior of traveling waves in a defect turbulence regime with the periodic boundary conditions by using the lowest-order complex Ginzburg-Landau equation (CGLE), and we show the effect of the nonlinear gradient terms in the system. It is found that the nonlinear gradient terms which appear at the same order as the quintic term can change the behavior of the wave patterns. The presence of the nonlinear gradient terms can cause major changes in the behavior of the solution. They can be considered like the stabilizing terms. The system which was initially unstable or chaotic can become stable by including the nonlinear gradient terms.