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Adžić N, Jochum C, Likos CN, Stiakakis E. Engineering Ultrasoft Interactions in Stiff All-DNA Dendrimers by Site-Specific Control of Scaffold Flexibility. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2308763. [PMID: 38183376 DOI: 10.1002/smll.202308763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Revised: 12/10/2023] [Indexed: 01/08/2024]
Abstract
A combined experimental and theoretical study of the structural correlations in moderately concentrated suspensions of all-DNA dendrimers of the second generation (G2) with controlled scaffold rigidity is reported here. Small-angle X-ray scattering experiments in concentrated aqueous saline solutions of stiff all-DNA G2 dendritic constructs reveal a novel anomalous liquid-like phase behavior which is reflected in the calculated structure factors as a two-step increase at low scattering wave vectors. By developing a new design strategy for adjusting the particle's internal flexibility based on site-selective incorporation of single-stranded DNA linkers into the dendritic scaffold, it is shown that this unconventional type of self-organization is strongly contingent on the dendrimer's stiffness. A comprehensive computer simulation study employing dendritic models with different levels of coarse-graining, and two theoretical approaches based on effective, pair-potential interactions, remarkably confirmed the origin of this unusual liquid-like behavior. The results demonstrate that the precise control of the internal structure of the dendritic scaffold conferred by the DNA can be potentially used to engineer a rich palette of novel ultrasoft interaction potentials that could offer a route for directed self-assembly of intriguing soft matter phases and experimental realizations of a host of unusual phenomena theoretically predicted for ultrasoft interacting systems.
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Affiliation(s)
- Nataša Adžić
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, Vienna, A-1090, Austria
- Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, Belgrade, 11080, Serbia
| | - Clemens Jochum
- Institute for Theoretical Physics, TU Wien, Wiedner Hauptstraße 8-10, Vienna, A-1040, Austria
| | - Christos N Likos
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, Vienna, A-1090, Austria
| | - Emmanuel Stiakakis
- Biomacromolecular Systems and Processes, Institute of Biological Information Processing (IBI-4), Forschungszentrum Jülich, D-52425, Jülich, Germany
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Nie Y, Wang L, Guan P, Xu N. Understanding the glassy dynamics from melting temperatures in binary glass-forming liquids. SOFT MATTER 2024; 20:1565-1572. [PMID: 38270340 DOI: 10.1039/d4sm00020j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
It is natural to expect that small particles in binary mixtures move faster than large ones. However, in binary glass-forming liquids with soft-core particle interactions, we observe the counterintuitive dynamic reversal between large and small particles along with the increase of pressure by performing molecular dynamics simulations. The structural relaxation (dynamic heterogeneity) of small particles is faster (weaker) than large ones at low pressures, but becomes slower (stronger) above a crossover pressure. In contrast, this dynamic reversal never happens in glass-forming liquids with hard-core interactions. We find that the difference of the effective melting temperatures felt by large and small particles can be used to understand the dynamic reversal. In binary mixtures, we derive effective melting temperatures of large and small particles simply from the conversion of units and find that particles with a higher effective melting temperature usually undergo a slower and more heterogeneous relaxation. The presence (absence) of the dynamic reversal in soft-core (hard-core) systems is simply due to the non-monotonic (monotonic) behavior of the melting temperature as a function of pressure. Interestingly, by manipulating the relative softness between large and small particles, we obtain a special case of soft-core systems, in which large particles always have higher effective melting temperatures than small ones. As a result, the dynamic reversal is totally eliminated. Our work provides another piece of evidence of the underlying connections between the properties of non-equilibrium glass-formers and equilibrium crystal-formers.
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Affiliation(s)
- Yunhuan Nie
- Beijing Computational Science Research Center, Beijing 100193, People's Republic of China.
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Key Laboratory of Microscale Magnetic Resonance and Department of Physics, University of Science and Technology of China, Hefei 230026, People's Republic of China.
| | - Lijin Wang
- School of Physics and Optoelectronic Engineering, Anhui University, Hefei 230601, People's Republic of China.
| | - Pengfei Guan
- Beijing Computational Science Research Center, Beijing 100193, People's Republic of China.
| | - Ning Xu
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Key Laboratory of Microscale Magnetic Resonance and Department of Physics, University of Science and Technology of China, Hefei 230026, People's Republic of China.
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Sposini V, Likos CN, Camargo M. Glassy phases of the Gaussian core model. SOFT MATTER 2023. [PMID: 38050434 DOI: 10.1039/d3sm01314f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/06/2023]
Abstract
We present results from molecular dynamics simulations exploring the supercooled dynamics of the Gaussian Core Model in the low- and intermediate-density regimes. In particular, we analyse the transition from the low-density hard-sphere-like glassy dynamics to the high-density one. The dynamics at low densities is well described by the caging mechanism, giving rise to intermittent dynamics. At high densities, the particles undergo a more continuous motion in which the concept of cage loses its meaning. We elaborate on the idea that these different supercooled dynamics are in fact the precursors of two different glass states.
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Affiliation(s)
- Vittoria Sposini
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria.
| | - Christos N Likos
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria.
| | - Manuel Camargo
- Facultad de Ciencias & CICBA, Universidad Antonio Nariño-Campus Farallones, Km 18 via Cali-Jamundí, 760030 Cali, Colombia
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Bomont JM, Likos CN, Hansen JP. Glass quantization of the Gaussian core model. Phys Rev E 2022; 105:024607. [PMID: 35291117 DOI: 10.1103/physreve.105.024607] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Accepted: 02/07/2022] [Indexed: 06/14/2023]
Abstract
We use the replica method to study the dynamical glass transition of the Gaussian core model, a system of ultrasoft repulsive spheres interacting via a Gaussian potential, focusing on low temperatures and low-to-moderate densities. At constant temperature, an amorphous glassy state is entered upon a first compression but this glass melts as the density is further increased. In addition to this reentrant transition, a second, smooth transition is discovered between a continuous and a discretized glass. The properties of the former are continuous functions of temperatures, whereas the latter exhibits a succession of stripes, characterized by discontinuous jumps of the glassiness parameters. The glass physics of ultrasoft particles is hence richer than that of impenetrable particles for reasons that can be attributed to the ability of the former to create and break out-of-equilibrium clusters of overlapping particles.
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Affiliation(s)
- Jean-Marc Bomont
- Université de Lorraine, LCP-A2MC, UR 3469, 1 Blvd. François Arago, Metz F-57078, France
| | - Christos N Likos
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
| | - Jean-Pierre Hansen
- PHENIX, Sorbonne Université, F-75005 Paris, France
- Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom
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Connecting glass-forming ability of binary mixtures of soft particles to equilibrium melting temperatures. Nat Commun 2020; 11:3198. [PMID: 32581262 PMCID: PMC7314759 DOI: 10.1038/s41467-020-16986-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Accepted: 06/05/2020] [Indexed: 11/29/2022] Open
Abstract
The glass-forming ability is an important material property for manufacturing glasses and understanding the long-standing glass transition problem. Because of the nonequilibrium nature, it is difficult to develop the theory for it. Here we report that the glass-forming ability of binary mixtures of soft particles is related to the equilibrium melting temperatures. Due to the distinction in particle size or stiffness, the two components in a mixture effectively feel different melting temperatures, leading to a melting temperature gap. By varying the particle size, stiffness, and composition over a wide range of pressures, we establish a comprehensive picture for the glass-forming ability, based on our finding of the direct link between the glass-forming ability and the melting temperature gap. Our study reveals and explains the pressure and interaction dependence of the glass-forming ability of model glass-formers, and suggests strategies to optimize the glass-forming ability via the manipulation of particle interactions. Glass-forming ability is an important parameter for manufacturing glassy materials, but it remains challenging to be characterized due to its nonequilibrium nature. Nie et al. provide a solution by linking it to the pressure dependence of melting temperature of constituent components in binary mixtures.
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Wang Z, Faraone A, Yin P, Porcar L, Liu Y, Do C, Hong K, Chen WR. Dynamic Equivalence between Soft Star Polymers and Hard Spheres. ACS Macro Lett 2019; 8:1467-1473. [PMID: 35651190 DOI: 10.1021/acsmacrolett.9b00617] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Understanding the dynamics of soft colloids, such as star polymers, dendrimers, and microgels, is of scientific and practical importance. It is known that the excluded volume effect plays a key role in colloidal dynamics. Here, we propose a condition of compressibility equivalence that provides a simple method to experimentally evaluate the excluded volume of soft colloids from a thermodynamic view. We apply this condition to survey the dynamics of a series of star polymer dispersions. It is found that, as the concentration increases, the slowing of the long-time self-diffusivity of the star polymer, normalized by the short-time self-diffusivity, can be mapped onto the hard-sphere behavior. This phenomenon reveals the dynamic equivalence between soft colloids and hard spheres, despite the apparent complexity of the interparticle interaction of the soft colloids. The methods for measuring the osmotic compressibility and the self-diffusivities of soft colloidal dispersions are also presented.
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Affiliation(s)
- Zhe Wang
- Department of Engineering Physics and Key Laboratory of Particle and Radiation Imaging (Tsinghua University) of Ministry of Education, Tsinghua University, Beijing 100084, China.,Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Antonio Faraone
- Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland 20899-6100, United States
| | - Panchao Yin
- South China Advanced Institute for Soft Matter Science and Technology, South China University of Technology, Guangzhou 510640, China
| | - Lionel Porcar
- Institut Laue-Langevin, B.P. 156, F-38042 Grenoble CEDEX 9, France
| | - Yun Liu
- Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland 20899-6100, United States
| | - Changwoo Do
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Kunlun Hong
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Wei-Ren Chen
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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Maiti M, Schmiedeberg M. Temperature dependence of the transition packing fraction of thermal jamming in a harmonic soft sphere system. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2019; 31:165101. [PMID: 30681976 DOI: 10.1088/1361-648x/ab01e9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The glassy dynamics of soft harmonic spheres are often mapped onto the dynamics of hard spheres by considering an effective diameter for the soft particles and therefore an effective packing fraction. While in this approach the thermal fluctuations within valleys of the energy landscape are covered, the crossing of energy barriers from one valley into another usually is neglected. Here we argue-motivated by studies of the glass transition based on explorations of the energy landscape-that the crossing of energy barriers can be attributed by an effective decrease of the glass transition packing fraction with increasing temperature T according to T 0.2. Furthermore, we reanalyzing data of soft sphere simulations. Since fitting scaling laws to simulation data always allows for some arbitrariness, we cannot prove based on the simulation data that our idea of a shift of the glass transition packing fraction due to barrier crossings is the only possible way to explain the discrepancies that have been observed previously. However, we show that a possible explanation of the simulation data is given by our approach to characterize the dynamics of soft spheres by both, the previously-considered temperature-dependent effective packing fraction due to the increase of the mean overlap between neighboring particles with stronger thermal fluctuations and the newly introduced increase of the glass transition packing with an increasing probability of barrier crossings.
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Affiliation(s)
- Moumita Maiti
- Institut für Physikalische Chemie, Westfälische Wilhelms-Universität (WWU), Corrensstr. 28/30, 48149 Münster, Germany
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Maiti M, Schmiedeberg M. The thermal jamming transition of soft harmonic disks in two dimensions. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2019; 42:38. [PMID: 30915605 DOI: 10.1140/epje/i2019-11802-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Accepted: 02/25/2019] [Indexed: 06/09/2023]
Abstract
By exploring the properties of the energy landscape of a bidisperse system of soft harmonic disks in two dimensions we determine the thermal jamming transition. To be specific, we study whether the ground state of the system where the particles do not overlap can be reached within a reasonable time. Starting with random initial configurations, the energy landscape is probed by energy minimization steps as in case of athermal jamming and in addition steps where an energy barrier can be crossed with a small but non-zero probability. For random initial conditions we find that as a function of packing fraction the thermal jamming transition, i.e. the transition from a state where all overlaps can be removed to an effectively non-ergodic state where one cannot get rid of the overlaps, occurs at a packing fraction of [Formula: see text], which is smaller than the transition packing fraction of athermal jamming at [Formula: see text]. Furthermore, we show that the thermal jamming transition is in the universality class of directed percolation and therefore is fundamentally different from the athermal jamming transition.
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Affiliation(s)
- Moumita Maiti
- Institut für Physikalische Chemie, Westfälische Wilhelms-Universität (WWU), Corrensstr. 28/30, 48149, Münster, Germany
| | - Michael Schmiedeberg
- Institut für Theoretische Physik I, Friedrich-Alexander Universität Erlangen-Nürnberg (FAU), Staudtstraße 7, 91058, Erlangen, Germany.
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Miyazaki R, Kawasaki T, Miyazaki K. Slow dynamics coupled with cluster formation in ultrasoft-potential glasses. J Chem Phys 2019; 150:074503. [PMID: 30795681 DOI: 10.1063/1.5086379] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We numerically investigate the slow dynamics of a binary mixture of ultrasoft particles interacting with the generalized Hertzian potential. If the softness parameter, α, is small, the particles at high densities start penetrating each other, form clusters, and eventually undergo the glass transition. We find multiple cluster-glass phases characterized by a different number of particles per cluster, whose boundary lines are sharply separated by the cluster size. Anomalous logarithmic slow relaxation of the density correlation functions is observed in the vicinity of these glass-glass phase boundaries, which hints the existence of the higher-order dynamical singularities predicted by the mode-coupling theory. Deeply in the cluster glass phases, it is found that the dynamics of a single particle is decoupled from that of the collective fluctuations.
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11
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Zu M, Tan P, Xu N. Forming quasicrystals by monodisperse soft core particles. Nat Commun 2017; 8:2089. [PMID: 29234039 PMCID: PMC5727032 DOI: 10.1038/s41467-017-02316-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Accepted: 11/20/2017] [Indexed: 12/03/2022] Open
Abstract
In traditional approaches to form quasicrystals, multiple competing length scales involved in particle size, shape, or interaction potential are believed to be necessary. It is unexpected that quasicrystals can be formed by monodisperse, isotropic particles interacting via a simple potential that does not contain explicit multiple length scales to stabilize quasicrystals. Here, we report the surprising finding of the formation of such quasicrystals in high-density systems of soft-core particles. Although there are length scales naturally introduced in our model systems, they do not establish the quasicrystalline order. In two dimensions, we find not only dodecagonal but also octagonal quasicrystals, which have not been found yet in soft quasicrystals. In such unexpected quasicrystals, particles tend to form pentagons, which are essential elements to develop the quasicrystalline order. Our findings thus pave an unexpected and simple way to form quasicrystals and pose a challenge for theoretical understanding of quasicrystals. Quasicrystals with structural symmetries forbidden in crystals have been found in alloys or mono-component systems composed of anisotropic units. Zu et al. show a formation of two-dimensional quasicrystals in an isotropic soft solid with a spring-like potential, which challenges the existing theory.
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Affiliation(s)
- Mengjie Zu
- CAS Key Laboratory of Soft Matter Chemistry, Hefei National Laboratory for Physical Sciences at the Microscale, and Department of Physics, University of Science and Technology of China, Hefei, 230026, People's Republic of China
| | - Peng Tan
- State Key Laboratory of Surface Physics and Department of Physics, Fudan University, Shanghai, 200433, People's Republic of China
| | - Ning Xu
- CAS Key Laboratory of Soft Matter Chemistry, Hefei National Laboratory for Physical Sciences at the Microscale, and Department of Physics, University of Science and Technology of China, Hefei, 230026, People's Republic of China.
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Díaz-Méndez R, Mezzacapo F, Lechner W, Cinti F, Babaev E, Pupillo G. Glass Transitions in Monodisperse Cluster-Forming Ensembles: Vortex Matter in Type-1.5 Superconductors. PHYSICAL REVIEW LETTERS 2017; 118:067001. [PMID: 28234534 DOI: 10.1103/physrevlett.118.067001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Indexed: 06/06/2023]
Abstract
At low enough temperatures and high densities, the equilibrium configuration of an ensemble of ultrasoft particles is a self-assembled, ordered, cluster crystal. In the present Letter, we explore the out-of-equilibrium dynamics for a two-dimensional realization, which is relevant to superconducting materials with multiscale intervortex forces. We find that, for small temperatures following a quench, the suppression of the thermally activated particle hopping hinders the ordering. This results in a glass transition for a monodispersed ensemble, for which we derive a microscopic explanation in terms of an "effective polydispersity" induced by multiscale interactions. This demonstrates that a vortex glass can form in clean systems of thin films of "type-1.5" superconductors. An additional setup to study this physics can be layered superconducting systems, where the shape of the effective vortex-vortex interactions can be engineered.
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Affiliation(s)
- Rogelio Díaz-Méndez
- icFRC, IPCMS (UMR 7504), ISIS (UMR 7006), Université de Strasbourg and CNRS, 67000 Strasbourg, France
| | - Fabio Mezzacapo
- icFRC, IPCMS (UMR 7504), ISIS (UMR 7006), Université de Strasbourg and CNRS, 67000 Strasbourg, France
| | - Wolfgang Lechner
- IQOQI and Institute for Theoretical Physics, University of Innsbruck, 6020 Innsbruck, Austria
| | - Fabio Cinti
- National Institute for Theoretical Physics (NITheP), Stellenbosch 7600, South Africa
- Institute of Theoretical Physics, Stellenbosch University, Stellenbosch 7600, South Africa
| | - Egor Babaev
- Department of Theoretical Physics and Center for Quantum Materials, KTH-Royal Institute of Technology, Stockholm SE-10691, Sweden
| | - Guido Pupillo
- icFRC, IPCMS (UMR 7504), ISIS (UMR 7006), Université de Strasbourg and CNRS, 67000 Strasbourg, France
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