1
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Rinesh T, Srinivasan H, Sharma VK, Mitra S. Unraveling relationship between complex lifetimes and microscopic diffusion in deep eutectic solvents. J Chem Phys 2024; 161:024501. [PMID: 38973757 DOI: 10.1063/5.0213402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 06/17/2024] [Indexed: 07/09/2024] Open
Abstract
Aqueous mixtures of deep eutectic solvents (DESs) have emerged as a subject of interest in recent years for their tailored physicochemical properties. However, a comprehensive understanding of water's multifaceted influence on the microscopic dynamics, including its impact on improved transport properties of the DES, remains elusive. Additionally, the diffusion mechanisms within DESs manifest heterogeneous behavior, intricately tied to the formation and dissociation kinetics of complexes and hydrogen bonds. Therefore, it is imperative to explore the intricate interplay between bond kinetics, diffusion mechanism, and dynamical heterogeneity. This work employs water as an agent to explore their relationships by studying various relaxation phenomena in a DES based on acetamide and lithium perchlorate over a wide range of water concentrations. Notably, acetamide exhibits Fickian yet non-Gaussian diffusion across all water concentrations with Fickian (τf) and Gaussian (τg) timescales following a power-law relationship, τg∝τfγ, γ ∼ 1.4. The strength of coupling between bond kinetics and different diffusion timescales is estimated through various power-law relationships. Notably, acetamide-water hydrogen bond lifetime is linked to diffusive timescales through a single power-law over the entire water concentration studied. However, the relationship between diffusive timescales and the lifetime of acetamide-lithium complexes shows a sharp transition in behavior at 20 wt. % water, reflecting a change from vehicular diffusion below this concentration to structural diffusion above it. Our findings emphasize the critical importance of understanding bond dynamics within DESs, as they closely correlate with and regulate the molecular diffusion processes within these systems.
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Affiliation(s)
- T Rinesh
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - H Srinivasan
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - V K Sharma
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - S Mitra
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
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2
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Winters A, Öttinger HC, Vermant J. Comparative analysis of fluctuations in viscoelastic stress: A comparison of the temporary network and dumbbell models. J Chem Phys 2024; 161:014901. [PMID: 38949587 DOI: 10.1063/5.0213660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Accepted: 06/11/2024] [Indexed: 07/02/2024] Open
Abstract
Traditionally, stress fluctuations in flowing and deformed materials are overlooked, with an obvious focus on average stresses in a continuum mechanical approximation. However, these fluctuations, often dismissed as "noise," hold the potential to provide direct insights into the material structure and its structure-stress coupling, uncovering detailed aspects of fluid transport and relaxation behaviors. Despite advancements in experimental techniques allowing for the visualization of these fluctuations, their significance remains largely untapped as modeling efforts continue to target Newtonian fluids within the confines of Gaussian noise assumptions. In the present work, a comparative analysis of stress fluctuations in two distinct microstructural models is carried out: the temporary network model and the hydrodynamic dumbbell model. Despite both models conforming to the upper convected Maxwell model at a macroscopic level, the temporary network model predicts non-Gaussian fluctuations. We find that stress fluctuations within the temporary network model exhibit more pronounced abruptness at the local scale, with only an enlargement of the control volume leading to a gradual Gaussian-like noise, diminishing the differences between the two models. These findings underscore the heightened sensitivity of fluctuating rheology to microstructural details and the microstructure-flow coupling, beyond what is captured by macroscopically averaged stresses.
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Affiliation(s)
- Arturo Winters
- Department of Materials, ETH Zurich, Vladimir-Prelog-Weg 5, Zurich 8093, Switzerland
| | | | - Jan Vermant
- Department of Materials, ETH Zurich, Vladimir-Prelog-Weg 5, Zurich 8093, Switzerland
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3
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Vaibhav V, Dutta S. Entropic timescales of dynamic heterogeneity in supercooled liquid. Phys Rev E 2024; 109:L062102. [PMID: 39020902 DOI: 10.1103/physreve.109.l062102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 05/17/2024] [Indexed: 07/20/2024]
Abstract
Non-Gaussian displacement distributions are universal predictors of dynamic heterogeneity in slowly varying environments. Here, we explore heterogeneous dynamics in supercooled liquid using molecular dynamics simulations and show the efficiency of the relative-entropy based measure, negentropy, in quantifying dynamic heterogeneity over the widely used non-Gaussian parameter. Our analysis shows that the heterogeneity quantified by the negentropy is significantly different from the one obtained using the conventional moment-based definition that considers deviation from Gaussianity up to lower-order moments. We extract the timescales of dynamic heterogeneity using the two methods and show that the differential changes diverge as the system experiences strong intermittency near the glass transition. Further, we interpret the entropic timescales and discuss the general implications of our work.
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4
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Tonti L, García Daza FA, Romero-Enrique JM, Patti A. Structural and dynamical equilibrium properties of hard board-like particles in parallel confinement. J Chem Phys 2024; 160:124903. [PMID: 38533886 DOI: 10.1063/5.0193126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 03/10/2024] [Indexed: 03/28/2024] Open
Abstract
We performed Monte Carlo and dynamic Monte Carlo simulations to model the diffusion of monodispersed suspensions composed of impenetrable cuboidal particles, specifically hard board-like particles (HBPs), in the presence of parallel hard walls. The impact of the walls was investigated by adjusting the size of the simulation box while maintaining constant packing fractions, fixed at η = 0.150, for systems consisting of HBPs with prolate, dual-shaped, and oblate geometries. We observed that increasing the distance between the walls led to the recovery of an isotropic bulk phase, while local particle organization near the walls remained stable. Due to their shape, oblate HBPs exhibit more efficient anchoring at wall surfaces compared to prolate shapes. The formation of nematic-like particle assemblies near the walls, confirmed by theoretical calculations based on density functional theory, significantly influenced local particle dynamics. This effect was particularly pronounced to the extent that a modest portion of cuboids near the walls tended to diffuse exclusively in planes parallel to the confinement, even more efficiently than observed in the bulk regions.
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Affiliation(s)
- Luca Tonti
- Department of Chemical Engineering, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Fabián A García Daza
- Department of Physical, Chemical and Natural Systems, Pablo de Olavide University, 41013 Sevilla, Spain
| | - José Manuel Romero-Enrique
- Departamento de Física Atómica, Molecular y Nuclear, Área de Física Teórica, Universidad de Sevilla, Avenida de Reina Mercedes s/n, 41012 Sevilla, Spain
- Carlos I Institute of Theoretical and Computational Physics, Fuente Nueva s/n, 18071 Granada, Spain
| | - Alessandro Patti
- Department of Chemical Engineering, The University of Manchester, Manchester M13 9PL, United Kingdom
- Carlos I Institute of Theoretical and Computational Physics, Fuente Nueva s/n, 18071 Granada, Spain
- Department of Applied Physics, University of Granada, Fuente Nueva s/n, 18071 Granada, Spain
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5
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Sposini V, Nampoothiri S, Chechkin A, Orlandini E, Seno F, Baldovin F. Being Heterogeneous Is Advantageous: Extreme Brownian Non-Gaussian Searches. PHYSICAL REVIEW LETTERS 2024; 132:117101. [PMID: 38563912 DOI: 10.1103/physrevlett.132.117101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 11/15/2023] [Accepted: 02/01/2024] [Indexed: 04/04/2024]
Abstract
Redundancy in biology may be explained by the need to optimize extreme searching processes, where one or few among many particles are requested to reach the target like in human fertilization. We show that non-Gaussian rare fluctuations in Brownian diffusion dominates such searches, introducing drastic corrections to the known Gaussian behavior. Our demonstration entails different physical systems and pinpoints the relevance of diversity within redundancy to boost fast targeting. We sketch an experimental context to test our results: polydisperse systems.
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Affiliation(s)
- Vittoria Sposini
- Faculty of Physics, University of Vienna, Kolingasse 14-16, 1090 Vienna, Austria
| | - Sankaran Nampoothiri
- Department of Physics, Gandhi Institute of Technology and Management (GITAM) University, Bengaluru 561203, India
| | - Aleksei Chechkin
- Faculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wroclaw University of Science and Technology, Wyspianskiego Str. 27, 50-370 Wroclaw, Poland
- Institute for Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
- Akhiezer Institute for Theoretical Physics, 61108 Kharkov, Ukraine
| | - Enzo Orlandini
- Dipartimento di Fisica e Astronomia 'G. Galilei' - DFA, Sezione INFN, Università di Padova, Via Marzolo 8, 35131 Padova (PD), Italy
| | - Flavio Seno
- Dipartimento di Fisica e Astronomia 'G. Galilei' - DFA, Sezione INFN, Università di Padova, Via Marzolo 8, 35131 Padova (PD), Italy
| | - Fulvio Baldovin
- Dipartimento di Fisica e Astronomia 'G. Galilei' - DFA, Sezione INFN, Università di Padova, Via Marzolo 8, 35131 Padova (PD), Italy
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6
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Federbush A, Moscovich A, Bar-Sinai Y. Hidden Markov modeling of single-particle diffusion with stochastic tethering. Phys Rev E 2024; 109:034129. [PMID: 38632757 DOI: 10.1103/physreve.109.034129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 02/14/2024] [Indexed: 04/19/2024]
Abstract
The statistics of the diffusive motion of particles often serve as an experimental proxy for their interaction with the environment. However, inferring the physical properties from the observed trajectories is challenging. Inspired by a recent experiment, here we analyze the problem of particles undergoing two-dimensional Brownian motion with transient tethering to the surface. We model the problem as a hidden Markov model where the physical position is observed and the tethering state is hidden. We develop an alternating maximization algorithm to infer the hidden state of the particle and estimate the physical parameters of the system. The crux of our method is a saddle-point-like approximation, which involves finding the most likely sequence of hidden states and estimating the physical parameters from it. Extensive numerical tests demonstrate that our algorithm reliably finds the model parameters and is insensitive to the initial guess. We discuss the different regimes of physical parameters and the algorithm's performance in these regimes. We also provide a free software implementation of our algorithm.
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Affiliation(s)
- Amit Federbush
- Department of Condensed Matter Physics, Tel Aviv University, Tel Aviv 69978, Israel
- Center for Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv 69978, Israel
| | - Amit Moscovich
- Department of Statistics and Operations Research, Tel Aviv University, Tel Aviv 69978, Israel
| | - Yohai Bar-Sinai
- Department of Condensed Matter Physics, Tel Aviv University, Tel Aviv 69978, Israel
- Center for Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv 69978, Israel
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7
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Sposini V, Nampoothiri S, Chechkin A, Orlandini E, Seno F, Baldovin F. Being heterogeneous is disadvantageous: Brownian non-Gaussian searches. Phys Rev E 2024; 109:034120. [PMID: 38632764 DOI: 10.1103/physreve.109.034120] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 02/01/2024] [Indexed: 04/19/2024]
Abstract
Diffusing diffusivity models, polymers in the grand canonical ensemble and polydisperse, and continuous-time random walks all exhibit stages of non-Gaussian diffusion. Is non-Gaussian targeting more efficient than Gaussian? We address this question, central to, e.g., diffusion-limited reactions and some biological processes, through a general approach that makes use of Jensen's inequality and that encompasses all these systems. In terms of customary mean first-passage time, we show that Gaussian searches are more effective than non-Gaussian ones. A companion paper argues that non-Gaussianity becomes instead highly more efficient in applications where only a small fraction of tracers is required to reach the target.
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Affiliation(s)
- Vittoria Sposini
- Faculty of Physics, University of Vienna, Kolingasse 14-16, 1090 Vienna, Austria
| | - Sankaran Nampoothiri
- Department of Physics, Gandhi Institute of Technology and Management (GITAM) University, Bengaluru 561203, India
| | - Aleksei Chechkin
- Faculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wroclaw University of Science and Technology, Wyspianskiego Street 27, 50-370 Wroclaw, Poland
- Institute for Physics and Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
- Akhiezer Institute for Theoretical Physics, 61108 Kharkov, Ukraine
| | - Enzo Orlandini
- Dipartimento di Fisica e Astronomia 'G. Galilei' - DFA, Sezione INFN, Università di Padova, Via Marzolo 8, 35131 Padova (PD), Italy
| | - Flavio Seno
- Dipartimento di Fisica e Astronomia 'G. Galilei' - DFA, Sezione INFN, Università di Padova, Via Marzolo 8, 35131 Padova (PD), Italy
| | - Fulvio Baldovin
- Dipartimento di Fisica e Astronomia 'G. Galilei' - DFA, Sezione INFN, Università di Padova, Via Marzolo 8, 35131 Padova (PD), Italy
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8
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Srinivasan H, Sharma VK, García Sakai V, Mitra S. Nature of Subdiffusion Crossover in Molecular and Polymeric Glassformers. PHYSICAL REVIEW LETTERS 2024; 132:058202. [PMID: 38364148 DOI: 10.1103/physrevlett.132.058202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 11/21/2023] [Accepted: 01/03/2024] [Indexed: 02/18/2024]
Abstract
A crossover from a non-Gaussian to Gaussian subdiffusion has been observed ubiquitously in various polymeric and molecular glassformers. We have developed a framework that generalizes the fractional Brownian motion model to incorporate non-Gaussian features by introducing a jump kernel. We illustrate that the non-Gaussian fractional Brownian motion model accurately characterizes the subdiffusion crossover. From the solutions of the non-Gaussian fractional Brownian motion model, we gain insights into the nature of van Hove self-correlation in non-Gaussian subdiffusive regime, which is found to exhibit exponential tails, providing first such experimental evidence in molecular glassformers. The validity of the model is supported by comparison with incoherent quasielastic neutron scattering data obtained from several molecular and polymeric glassformers.
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Affiliation(s)
- H Srinivasan
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - V K Sharma
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - V García Sakai
- ISIS Neutron and Muon Centre, Rutherford Appleton Laboratory, Didcot, United Kingdom
| | - S Mitra
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
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9
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Sayer T, Montoya-Castillo A. Efficient formulation of multitime generalized quantum master equations: Taming the cost of simulating 2D spectra. J Chem Phys 2024; 160:044108. [PMID: 38270238 DOI: 10.1063/5.0185578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 12/26/2023] [Indexed: 01/26/2024] Open
Abstract
Modern 4-wave mixing spectroscopies are expensive to obtain experimentally and computationally. In certain cases, the unfavorable scaling of quantum dynamics problems can be improved using a generalized quantum master equation (GQME) approach. However, the inclusion of multiple (light-matter) interactions complicates the equation of motion and leads to seemingly unavoidable cubic scaling in time. In this paper, we present a formulation that greatly simplifies and reduces the computational cost of previous work that extended the GQME framework to treat arbitrary numbers of quantum measurements. Specifically, we remove the time derivatives of quantum correlation functions from the modified Mori-Nakajima-Zwanzig framework by switching to a discrete-convolution implementation inspired by the transfer tensor approach. We then demonstrate the method's capabilities by simulating 2D electronic spectra for the excitation-energy-transfer dimer model. In our method, the resolution of data can be arbitrarily coarsened, especially along the t2 axis, which mirrors how the data are obtained experimentally. Even in a modest case, this demands O(103) fewer data points. We are further able to decompose the spectra into one-, two-, and three-time correlations, showing how and when the system enters a Markovian regime where further measurements are unnecessary to predict future spectra and the scaling becomes quadratic. This offers the ability to generate long-time spectra using only short-time data, enabling access to timescales previously beyond the reach of standard methodologies.
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Affiliation(s)
- Thomas Sayer
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, USA
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10
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Voulgarakis NK. Multilayered noise model for transport in complex environments. Phys Rev E 2023; 108:064105. [PMID: 38243501 DOI: 10.1103/physreve.108.064105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 11/09/2023] [Indexed: 01/21/2024]
Abstract
Transport in complex fluidic environments often exhibits transient subdiffusive dynamics accompanied by non-Gaussian probability density profiles featuring a nonmonotonic non-Gaussian parameter. Such properties cannot be adequately explained by the original theory of Brownian motion. Based on an extension of kinetic theory, this study introduces a chain of hierarchically coupled random walks approach that effectively captures all these intriguing characteristics. If the environment consists of a series of independent white noise sources, then the problem can be expressed as a system of hierarchically coupled Ornstein-Uhlenbech equations. Due to the linearity of the system, the most essential transport properties have a closed analytical form.
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Affiliation(s)
- Nikolaos K Voulgarakis
- Department of Mathematics and Statistics, Washington State University, Pullman, Washington 99164, USA
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11
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Kumar A, Daschakraborty S. Anomalous lateral diffusion of lipids during the fluid/gel phase transition of a lipid membrane. Phys Chem Chem Phys 2023; 25:31431-31443. [PMID: 37962400 DOI: 10.1039/d3cp04081j] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
A lipid membrane undergoes a phase transition from fluid to gel phase upon changing external thermodynamic conditions, such as decreasing temperature and increasing pressure. Extremophilic organisms face the challenge of preventing this deleterious phase transition. The main focus of their adaptive strategy is to facilitate effective temperature sensing through sensor proteins, relying on the drastic changes in packing density and membrane fluidity during the phase transition. Although the changes in packing density parameters due to the fluid/gel phase transition are studied in detail, the impact on membrane fluidity is less explored in the literature. Understanding the lateral diffusive dynamics of lipids in response to temperature, particularly during the fluid/gel phase transition, is albeit crucial. Here we have simulated the phase transition of a single component lipid membrane composed of dipalmitoylphosphatidylcholine (DPPC) lipids using a coarse-grained (CG) model and studied the changes of the structural and dynamical properties. It is observed that near the phase transition point, both fluid and gel phase domains coexist together. The dynamics remains highly non-Gaussian for a long time even when the mean square displacement reaches the Fickian regime at a much earlier time. This Fickian yet non-Gaussian diffusion (FnGD) is a characteristic of a highly heterogeneous system, previously observed for the lateral diffusion of lipids in raft mimetic membranes having liquid-ordered and liquid-disordered phases co-existing together. We have analyzed the molecular trajectories and calculated the jump-diffusion of the lipids, stemming from sudden jump translations, using a translational jump-diffusion (TJD) approach. An overwhelming contribution of the jump-diffusion of the lipids is observed suggesting anomalous diffusion of lipids during fluid/gel phase transition of the membrane. These results are important in unravelling the intricate nature of lipid diffusion during the phase transition of the membrane and open up a new possibility of investigating the most significant change of membrane properties during phase transition, which can be effectively sensed by proteins.
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Affiliation(s)
- Abhay Kumar
- Department of Chemistry, Indian Institute of Technology Patna, Bihar 801106, India.
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12
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Hu M, Chen H, Wang H, Burov S, Barkai E, Wang D. Triggering Gaussian-to-Exponential Transition of Displacement Distribution in Polymer Nanocomposites via Adsorption-Induced Trapping. ACS NANO 2023; 17:21708-21718. [PMID: 37879044 DOI: 10.1021/acsnano.3c06897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2023]
Abstract
In many disordered systems, the diffusion of classical particles is described by a displacement distribution P(x, t) that displays exponential tails instead of Gaussian statistics expected for Brownian motion. However, the experimental demonstration of control of this behavior by increasing the disorder strength has remained challenging. In this work, we explore the Gaussian-to-exponential transition by using diffusion of poly(ethylene glycol) (PEG) in attractive nanoparticle-polymer mixtures and controlling the volume fraction of the nanoparticles. In this work, we find "knobs", namely nanoparticle concentration and interaction, which enable the change in the shape of P(x,t) in a well-defined way. The Gaussian-to-exponential transition is consistent with a modified large deviation approach for a continuous time random walk and also with Monte Carlo simulations involving a microscopic model of polymer trapping via reversible adsorption to the nanoparticle surface. Our work bears significance in unraveling the fundamental physics behind the exponential decay of the displacement distribution at the tails, which is commonly observed in soft materials and nanomaterials.
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Affiliation(s)
- Ming Hu
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, People's Republic of China
- University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Hongbo Chen
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, People's Republic of China
| | - Hongru Wang
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, People's Republic of China
- University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Stanislav Burov
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Eli Barkai
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Dapeng Wang
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin 130022, People's Republic of China
- University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
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13
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Pareek P, Adhikari M, Dasgupta C, Nandi SK. Different glassy characteristics are related to either caging or dynamical heterogeneity. J Chem Phys 2023; 159:174503. [PMID: 37916596 DOI: 10.1063/5.0166404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Accepted: 10/09/2023] [Indexed: 11/03/2023] Open
Abstract
Despite the enormous theoretical and application interests, a fundamental understanding of the glassy dynamics remains elusive. The static properties of glassy and ordinary liquids are similar, but their dynamics are dramatically different. What leads to this difference is the central puzzle of the field. Even the primary defining glassy characteristics, their implications, and if they are related to a single mechanism remain unclear. This lack of clarity is a severe hindrance to theoretical progress. Here, we combine analytical arguments and simulations of various systems in different dimensions and address these questions. Our results suggest that the myriad of glassy features are manifestations of two distinct mechanisms. Particle caging controls the mean, and coexisting slow- and fast-moving regions govern the distribution of particle displacements. All the other glassy characteristics are manifestations of these two mechanisms; thus, the Fickian yet non-Gaussian nature of glassy liquids is not surprising. We discover a crossover, from stretched exponential to a power law, in the behavior of the overlap function. This crossover is prominent in simulation data and forms the basis of our analyses. Our results have crucial implications on how the glassy dynamics data are analyzed, challenge some recent suggestions on the mechanisms governing glassy dynamics, and impose strict constraints that a correct theory of glasses must have.
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Affiliation(s)
- Puneet Pareek
- Tata Institute of Fundamental Research, Hyderabad 500046, India
| | - Monoj Adhikari
- Tata Institute of Fundamental Research, Hyderabad 500046, India
| | - Chandan Dasgupta
- Department of Physics, Indian Institute of Science, Bangalore 560012, India
- International Centre for Theoretical Sciences, TIFR, Bangalore 560089, India
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14
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Singh RK, Burov S. Universal to nonuniversal transition of the statistics of rare events during the spread of random walks. Phys Rev E 2023; 108:L052102. [PMID: 38115504 DOI: 10.1103/physreve.108.l052102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Accepted: 09/11/2023] [Indexed: 12/21/2023]
Abstract
Through numerous experiments that analyzed rare event statistics in heterogeneous media, it was discovered that in many cases the probability density function for particle position, P(X,t), exhibits a slower decay rate than the Gaussian function. Typically, the decay behavior is exponential, referred to as Laplace tails. However, many systems exhibit an even slower decay rate, such as power-law, log-normal, or stretched exponential. In this study, we utilize the continuous-time random walk method to investigate the rare events in particle hopping dynamics and find that the properties of the hop size distribution induce a critical transition between the Laplace universality of rare events and a more specific, slower decay of P(X,t). Specifically, when the hop size distribution decays slower than exponential, such as e^{-|x|^{β}} (β>1), the Laplace universality no longer applies, and the decay is specific, influenced by a few large events, rather than by the accumulation of many smaller events that give rise to Laplace tails.
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Affiliation(s)
- R K Singh
- Department of Physics, Bar-Ilan University, Ramat-Gan 5290002, Israel
| | - Stanislav Burov
- Department of Physics, Bar-Ilan University, Ramat-Gan 5290002, Israel
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15
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Nakai F, Uneyama T. Brownian yet non-Gaussian diffusion of a light particle in heavy gas: Lorentz-gas-based analysis. Phys Rev E 2023; 108:044129. [PMID: 37978684 DOI: 10.1103/physreve.108.044129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Accepted: 09/21/2023] [Indexed: 11/19/2023]
Abstract
Non-Gaussian diffusion was recently observed in a gas mixture with mass and fraction contrast [F. Nakai et al., Phys. Rev. E 107, 014605 (2023)2470-004510.1103/PhysRevE.107.014605]. The mean-square displacement of a minor gas particle with a small mass is linear in time, while the displacement distribution deviates from the Gaussian distribution, which is called the Brownian yet non-Gaussian diffusion. In this work, we theoretically analyze this case where the mass contrast is sufficiently large. Major heavy particles can be interpreted as immobile obstacles, and a minor light particle behaves like a Lorentz gas particle within an intermediate timescale. Despite the similarity between the gas mixture and the conventional Lorentz gas system, the Lorentz gas description cannot fully describe the Brownian yet non-Gaussian diffusion. A successful description can be achieved through a canonical ensemble average of the statistical quantities of the Lorentz gas over the initial speed. Furhter, we show that the van Hove correlation function has a nonexponential tail, which is contrary to the exponential tail observed in various systems.
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Affiliation(s)
- Fumiaki Nakai
- Department of Materials Physics, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8603, Japan
| | - Takashi Uneyama
- Department of Materials Physics, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8603, Japan
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16
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Rusciano F, Pastore R, Greco F. Rusciano et al. Reply. PHYSICAL REVIEW LETTERS 2023; 131:119802. [PMID: 37774259 DOI: 10.1103/physrevlett.131.119802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 08/08/2023] [Indexed: 10/01/2023]
Affiliation(s)
- Francesco Rusciano
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, Piazzale Tecchio 80, Napoli 80125, Italy
| | - Raffaele Pastore
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, Piazzale Tecchio 80, Napoli 80125, Italy
| | - Francesco Greco
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, Piazzale Tecchio 80, Napoli 80125, Italy
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17
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Berthier L, Flenner E, Szamel G. Comment on "Fickian Non-Gaussian Diffusion in Glass-Forming Liquids". PHYSICAL REVIEW LETTERS 2023; 131:119801. [PMID: 37774276 DOI: 10.1103/physrevlett.131.119801] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 08/08/2023] [Indexed: 10/01/2023]
Affiliation(s)
- L Berthier
- Laboratoire Charles Coulomb (L2C), Université de Montpellier, CNRS, 34095 Montpellier, France
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - E Flenner
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
| | - G Szamel
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
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18
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Lucente D, Viale M, Gnoli A, Puglisi A, Vulpiani A. Revealing the Nonequilibrium Nature of a Granular Intruder: The Crucial Role of Non-Gaussian Behavior. PHYSICAL REVIEW LETTERS 2023; 131:078201. [PMID: 37656864 DOI: 10.1103/physrevlett.131.078201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 05/04/2023] [Accepted: 07/19/2023] [Indexed: 09/03/2023]
Abstract
The characterization of the distance from equilibrium is a debated problem in particular in the treatment of experimental signals. If the signal is a one-dimensional time series, such a goal becomes challenging. A paradigmatic example is the angular diffusion of a rotator immersed in a vibro-fluidized granular gas. Here, we experimentally observe that the rotator's angular velocity exhibits significant differences with respect to an equilibrium process. Exploiting the presence of two relevant timescales and non-Gaussian velocity increments, we quantify the breakdown of time-reversal asymmetry, which would vanish in the case of a 1D Gaussian process. We deduce a new model for the massive probe, with two linearly coupled variables, incorporating both Gaussian and Poissonian noise, the latter motivated by the rarefied collisions with the granular bath particles. Our model reproduces the experiment in a range of densities, from dilute to moderately dense, with a meaningful dependence of the parameters on the density. We believe the framework proposed here opens the way to a more consistent and meaningful treatment of out-of-equilibrium and dissipative systems.
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Affiliation(s)
- D Lucente
- Department of Physics, University of Rome Sapienza, Piazzale Aldo Moro 2, 00185, Rome, Italy
- Institute for Complex Systems-CNR, Piazzale Aldo Moro 2, 00185 Rome, Italy
| | - M Viale
- Department of Physics, University of Rome Sapienza, Piazzale Aldo Moro 2, 00185, Rome, Italy
- Institute for Complex Systems-CNR, Piazzale Aldo Moro 2, 00185 Rome, Italy
| | - A Gnoli
- Department of Physics, University of Rome Sapienza, Piazzale Aldo Moro 2, 00185, Rome, Italy
- Institute for Complex Systems-CNR, Piazzale Aldo Moro 2, 00185 Rome, Italy
| | - A Puglisi
- Department of Physics, University of Rome Sapienza, Piazzale Aldo Moro 2, 00185, Rome, Italy
- Institute for Complex Systems-CNR, Piazzale Aldo Moro 2, 00185 Rome, Italy
- INFN, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, 00133 Rome, Italy
| | - A Vulpiani
- Department of Physics, University of Rome Sapienza, Piazzale Aldo Moro 2, 00185, Rome, Italy
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19
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Ciarlo A, Pastore R, Greco F, Sasso A, Pesce G. Fickian yet non-Gaussian diffusion of a quasi-2D colloidal system in an optical speckle field: experiment and simulations. Sci Rep 2023; 13:7408. [PMID: 37149715 PMCID: PMC10164168 DOI: 10.1038/s41598-023-34433-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 04/29/2023] [Indexed: 05/08/2023] Open
Abstract
We investigate a quasi-2D suspension of Brownian particles in an optical speckle field produced by holographic manipulation of a laser wavefront. This system was developed to study, in a systematic and controllable way, a distinctive instance of diffusion, called Fickian yet Non Gaussian diffusion (FnGD), observed, during the last decade, for colloidal particles in a variety of complex and biological fluids. Our setup generates an optical speckle field that behaves like a disordered set of optical traps. First, we describe the experimental setup and the dynamics of the particles, focusing on mean square displacements, displacement distributions and kurtosis. Then, we present Brownian Dynamics simulations of point-like particles in a complex energy landscape, mimicking that generated by the optical speckle field. We show that our simulations can capture the salient features of the experimental results, including the emergence of FnGD, also covering times longer than the ones so far achieved in experiments. Some deviations are observed at long time only, with the Gaussian restoring being slower in simulations than in experiments. Overall, the introduced numerical model might be exploited to guide the design of upcoming experiments targeted, for example, to fully monitor the recovery of Gaussianity.
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Affiliation(s)
- Antonio Ciarlo
- Department of Physics E. Pancini, University of Naples Federico II, Complesso Universitario Monte Sant'Angelo, Via Cintia, 80126, Naples, Italy.
| | - Raffaele Pastore
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, P.le Tecchio 80, 80125, Naples, Italy
| | - Francesco Greco
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, P.le Tecchio 80, 80125, Naples, Italy
| | - Antonio Sasso
- Department of Physics E. Pancini, University of Naples Federico II, Complesso Universitario Monte Sant'Angelo, Via Cintia, 80126, Naples, Italy
| | - Giuseppe Pesce
- Department of Physics E. Pancini, University of Naples Federico II, Complesso Universitario Monte Sant'Angelo, Via Cintia, 80126, Naples, Italy
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20
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Rusciano F, Pastore R, Greco F. Universal Evolution of Fickian Non-Gaussian Diffusion in Two- and Three-Dimensional Glass-Forming Liquids. Int J Mol Sci 2023; 24:ijms24097871. [PMID: 37175578 PMCID: PMC10177888 DOI: 10.3390/ijms24097871] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 04/09/2023] [Accepted: 04/10/2023] [Indexed: 05/15/2023] Open
Abstract
Recent works show that glass-forming liquids display Fickian non-Gaussian Diffusion, with non-Gaussian displacement distributions persisting even at very long times, when linearity in the mean square displacement (Fickianity) has already been attained. Such non-Gaussian deviations temporarily exhibit distinctive exponential tails, with a decay length λ growing in time as a power-law. We herein carefully examine data from four different glass-forming systems with isotropic interactions, both in two and three dimensions, namely, three numerical models of molecular liquids and one experimentally investigated colloidal suspension. Drawing on the identification of a proper time range for reliable exponential fits, we find that a scaling law λ(t)∝tα, with α≃1/3, holds for all considered systems, independently from dimensionality. We further show that, for each system, data at different temperatures/concentration can be collapsed onto a master-curve, identifying a characteristic time for the disappearance of exponential tails and the recovery of Gaussianity. We find that such characteristic time is always related through a power-law to the onset time of Fickianity. The present findings suggest that FnGD in glass-formers may be characterized by a "universal" evolution of the distribution tails, independent from system dimensionality, at least for liquids with isotropic potential.
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Affiliation(s)
- Francesco Rusciano
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, P.le Tecchio 80, 80125 Napoli, Italy
| | - Raffaele Pastore
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, P.le Tecchio 80, 80125 Napoli, Italy
| | - Francesco Greco
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, P.le Tecchio 80, 80125 Napoli, Italy
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21
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Corci B, Hooiveld O, Dolga AM, Åberg C. Extending the analogy between intracellular motion in mammalian cells and glassy dynamics. SOFT MATTER 2023; 19:2529-2538. [PMID: 36939775 DOI: 10.1039/d2sm01672a] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
How molecules, organelles, and foreign objects move within living cells has been studied in organisms ranging from bacteria to human cells. In mammalian cells, in particular, cellular vesicles move across the cell using motor proteins that carry the vesicle down the cytoskeleton to their destination. We have recently noted several similarities between the motion of such vesicles and that in disordered, "glassy", systems, but the generality of this observation remains unclear. Here we follow the motion of mitochondria, the organelles responsible for cell energy production, in mammalian cells over timescales from 50 ms to 70 s. Qualitative observations show that single mitochondria remain within a spatially limited region for extended periods of time, before moving longer distances relatively quickly. The displacement distribution is roughly Gaussian for shorter distances (≲0.05 μm) but exhibits exponentially decaying tails at longer distances (up to 0.40 μm). This behaviour is well-described by a model developed to describe the motion in glassy systems. These observations are extended to in total 3 different objects (mitochondria, lysosomes and nano-sized beads enclosed in vesicles), 3 different mammalian cell types (HEK 293, HeLa, and HT22), from 2 different organisms (human and mouse). Further evidence that supports glass-like characteristics of the motion is a difference between the time it takes to move a longer distance for the first time and subsequent times, as well as a weak ergodicity breaking of the motion. Overall, we demonstrate the ubiquity of glass-like motion in mammalian cells, providing a different perspective on intracellular motion.
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Affiliation(s)
- Beatrice Corci
- Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands.
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Oscar Hooiveld
- Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands.
| | - Amalia M Dolga
- Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands.
| | - Christoffer Åberg
- Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands.
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22
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Alexandre A, Lavaud M, Fares N, Millan E, Louyer Y, Salez T, Amarouchene Y, Guérin T, Dean DS. Non-Gaussian Diffusion Near Surfaces. PHYSICAL REVIEW LETTERS 2023; 130:077101. [PMID: 36867824 DOI: 10.1103/physrevlett.130.077101] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 12/22/2022] [Indexed: 06/18/2023]
Abstract
We study the diffusion of particles confined close to a single wall and in double-wall planar channel geometries where the local diffusivities depend on the distance to the boundaries. Displacement parallel to the walls is Brownian as characterized by its variance, but it is non-Gaussian having a nonzero fourth cumulant. Establishing a link with Taylor dispersion, we calculate the fourth cumulant and the tails of the displacement distribution for general diffusivity tensors along with potentials generated by either the walls or externally, for instance, gravity. Experimental and numerical studies of the motion of a colloid in the direction parallel to the wall give measured fourth cumulants which are correctly predicted by our theory. Interestingly, contrary to models of Brownian-yet-non-Gaussian diffusion, the tails of the displacement distribution are shown to be Gaussian rather than exponential. All together, our results provide additional tests and constraints for the inference of force maps and local transport properties near surfaces.
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Affiliation(s)
- Arthur Alexandre
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Maxime Lavaud
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Nicolas Fares
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
- Department of Physics, Ecole Normale Supérieure de Lyon, 69364 Lyon, France
| | - Elodie Millan
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Yann Louyer
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Thomas Salez
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | | | - Thomas Guérin
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - David S Dean
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
- Team MONC, INRIA Bordeaux Sud Ouest, CNRS UMR 5251, Bordeaux INP, Université de Bordeaux, F-33400 Talence, France
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23
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Nakai F, Masubuchi Y, Doi Y, Ishida T, Uneyama T. Fluctuating diffusivity emerges even in binary gas mixtures. Phys Rev E 2023; 107:014605. [PMID: 36797902 DOI: 10.1103/physreve.107.014605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 12/22/2022] [Indexed: 01/19/2023]
Abstract
Diffusivity in some soft matter and biological systems changes with time, called the fluctuating diffusivity. In this work, we propose a novel origin for fluctuating diffusivity based on stochastic simulations of binary gas mixtures. In this system, the fraction of one component is significantly small, and the mass of the minor component molecule is different from that of the major component. The minor component exhibits fluctuating diffusivity when its mass is sufficiently smaller than that of the major component. We elucidate that this fluctuating diffusivity is caused by the time scale separation between the relaxation of the velocity direction and the speed of the minor component molecule.
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Affiliation(s)
- Fumiaki Nakai
- Department of Materials Physics, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8603, Japan
| | - Yuichi Masubuchi
- Department of Materials Physics, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8603, Japan
| | - Yuya Doi
- Department of Materials Physics, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8603, Japan
| | - Takato Ishida
- Department of Materials Physics, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8603, Japan
| | - Takashi Uneyama
- Department of Materials Physics, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa, Nagoya 464-8603, Japan
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24
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Perego A, Lazarenko D, Cloitre M, Khabaz F. Microscopic Dynamics and Viscoelasticity of Vitrimers. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c00588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alessandro Perego
- School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325, United States
| | - Daria Lazarenko
- School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325, United States
| | - Michel Cloitre
- Molecular, Macromolecular Chemistry, and Materials, ESPCI Paris, CNRS, PSL Research University, 75005 Paris, France
| | - Fardin Khabaz
- School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325, United States
- Department of Chemical, Biomolecular, and Corrosion Engineering, The University of Akron, Akron, Ohio 44325, United States
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