Spot deformation and replication in the two-dimensional Belousov-Zhabotinski reaction in a water-in-oil microemulsion

Bending and pinching of three-phase stripes: From secondary instabilities to morphological deformations in organic photovoltaics

Optimizing the properties of the mosaic nanoscale morphology of bulk heterojunction (BHJ) organic photovoltaics (OPV) is not only challenging technologically but also intriguing from the mechanistic point of view. Among the recent breakthroughs is the identification and utilization of a three-phase (donor-mixed-acceptor) BHJ, where the (intermediate) mixed phase can inhibit mesoscale morphological changes, such as phase separation. Using a mean-field approach, we reveal and distinguish between generic mechanisms that alter, through transverse instabilities, the evolution of stripes: the bending (zigzag mode) and the pinching (cross-roll mode) of the donor-acceptor domains. The results are summarized in a parameter plane spanned by the mixing energy and illumination, and show that donor-acceptor mixtures with higher mixing energy are more likely to develop pinching under charge-flux boundary conditions. The latter is notorious as it leads to the formation of disconnected domains and hence to loss of charge flux. We believe that these results provide a qualitative road map for BHJ optimization, using mixed-phase composition and, therefore, an essential step toward long-lasting OPV. More broadly, the results are also of relevance to study the coexistence of multiple-phase domains in material science, such as in ion-intercalated rechargeable batteries.

Spiral wave initiation in excitable media

Spiral waves represent an important example of dissipative structures observed in many distributed systems in chemistry, biology and physics. By definition, excitable media occupy a stationary resting state in the absence of external perturbations. However, a perturbation exceeding a threshold results in the initiation of an excitation wave propagating through the medium. These waves, in contrast to acoustic and optical ones, disappear at the medium's boundary or after a mutual collision, and the medium returns to the resting state. Nevertheless, an initiation of a rotating spiral wave results in a self-sustained activity. Such activity unexpectedly appearing in cardiac or neuronal tissues usually destroys their dynamics which results in life-threatening diseases. In this context, an understanding of possible scenarios of spiral wave initiation is of great theoretical importance with many practical applications.This article is part of the theme issue 'Dissipative structures in matter out of equilibrium: from chemistry, photonics and biology (part 2)'.

Pattern formation in a reaction-diffusion system of Fitzhugh-Nagumo type before the onset of subcritical Turing bifurcation

We investigate numerically the behavior of a two-component reaction-diffusion system of Fitzhugh-Nagumo type before the onset of subcritical Turing bifurcation in response to local rigid perturbation. In a large region of parameters, the initial perturbation evolves into a localized structure. In a part of that region, closer to the bifurcation line, this structure turns out to be unstable and covers all the available space over the course of time in a process of self-completion. Depending on the parameter values in two-dimensional (2D) space, this process happens either through generation and evolution of new peaks on oscillatory tails of the initial pattern, or through the elongation, deformation, and rupture of initial structure, leading to space-filling nonbranching snakelike patterns. Transient regimes are also possible. Comparison of these results with 1D simulations shows that the prebifurcation region of parameters where the self-completion process is observed is much larger in the 2D case.

A model of cell surface receptor aggregation

In this paper we construct and analyze a model of cell receptor aggregation. Experiments have shown that receptors in an aggregated state have greatly reduced mobility. We model the effects of this reduced mobility with a density dependent diffusion and study the impact of density dependent diffusion on aggregate formation in a one-dimensional domain. Critical values of receptor diffusivity and receptor activation are found and compared with numerical simulations. We find that the role of density dependant diffusion is quite limited in the formation of aggregate structures. In the case of receptor activation, the analytical results agree very well with the numerical calculations. Finally, we consider our model in higher dimensional domains. In this case our analysis is primarily numerical.

Self-Replication of Localized Vegetation Patches in Scarce Environments

Desertification due to climate change and increasing drought periods is a worldwide problem for both ecology and economy. Our ability to understand how vegetation manages to survive and propagate through arid and semiarid ecosystems may be useful in the development of future strategies to prevent desertification, preserve flora-and fauna within-or even make use of scarce resources soils. In this paper, we study a robust phenomena observed in semi-arid ecosystems, by which localized vegetation patches split in a process called self-replication. Localized patches of vegetation are visible in nature at various spatial scales. Even though they have been described in literature, their growth mechanisms remain largely unexplored. Here, we develop an innovative statistical analysis based on real field observations to show that patches may exhibit deformation and splitting. This growth mechanism is opposite to the desertification since it allows to repopulate territories devoid of vegetation. We investigate these aspects by characterizing quantitatively, with a simple mathematical model, a new class of instabilities that lead to the self-replication phenomenon observed.

Experimental observation of localized structures in medium size VCSELs

We report experimental evidence of spontaneous formation of localized structures in a 80 μm diameter Vertical-Cavity Surface-Emitting Laser (VCSEL) biased above the lasing threshold and under optical injection. Such localized structures are bistable with the injected beam power and the VCSEL current. We experimentally investigate the formation of localized structures for different detunings between the injected beam and the VCSEL, and different injection beam waists.

Delayed feedback induces motion of localized spots in reaction-diffusion systems

We study the formation of localized structures, often called localized spots, in reaction-diffusion systems subject to time delayed feedback control. We focus on the regime close to a second-order critical point marking the onset of a hysteresis loop. We show that the space-time dynamics of the FitzHugh-Nagumo model in the vicinity of that critical point could be described by the delayed Swift-Hohenberg equation. We show that the delayed feedback induces a spontaneous motion of localized spots. We characterize this motion by computing analytically the velocity and the threshold above which localized structures start to move in an arbitrary direction. Numerical solutions of the governing equation are in close agreement with those obtained from the delayed Swift-Hohenberg equation.

Predicted formation of localized superlattices in spatially distributed reaction-diffusion solutions

We study numerically the formation of localized superlattices in spatially distributed systems. We predict that in wide regions of the parameter space, stable localized, either bright or dark, superlattices may form in reaction-diffusion systems. Localized superlattices are patterns which consist of a piece of superlattice. Each single ring is surrounded by spots. The number of rings and their spatial distribution are determined by the initial conditions. The peak concentration remains unaltered for fixed values of the parameters.

Disproportionation of bromous acid HOBrO by direct O-transfer and via anhydrides O(BrO)2 and BrO-BrO2. An ab initio study of the mechanism of a key step of the Belousov-Zhabotinsky oscillating reaction

The results are reported of an ab initio study of the thermochemistry and of the kinetics of the HOBrO disproportionation reaction 2HOBrO (2) ⇄ HOBr (1) + HBrO(3) (3), reaction ( R4' ), in gas phase (MP2(full)/6-311G*) and aqueous solution (SMD(MP2(full)/6-311G*)). The reaction energy of bromous acid disproportionation is discussed in the context of the coupled reaction system R2-R4 of the FKN mechanism of the Belousov-Zhabotinsky reaction and considering the acidities of HBr and HOBrO(2). The structures were determined of ten dimeric aggregates 4 of bromous acid, (HOBrO)(2), of eight mixed aggregates 5 formed between the products of disproportionation, (HOBr)(HOBrO(2)), and of four transition states structures 6 for disproportionation by direct O-transfer. It was found that the condensation of two HOBrO molecules provides facile access to bromous acid anhydride 7, O(BrO)(2). A discussion of the potential energy surface of Br(2)O(3) shows that O(BrO)(2) is prone to isomerization to the mixed anhydride 8, BrO-BrO(2), and to dissociation to 9, BrO, and 10, BrO(2), and their radical pair 11. Hence, three possible paths from O(BrO)(2) to the products of disproportionation, HOBr and HOBrO(2), are discussed: (1) hydrolysis of O(BrO)(2) along a path that differs from its formation, (2) isomerization of O(BrO)(2) to BrO-BrO(2) followed by hydrolysis, and (3) O(BrO)(2) dissociation to BrO and BrO(2) and their reactions with water. The results of the potential energy surface analysis show that the rate-limiting step in the disproportionation of HOBrO consists of the formation of the hydrate 12a of bromous acid anhydride 7 via transition state structure 14a. The computed activation free enthalpy ΔG(act)(SMD) = 13.6 kcal/mol for the process 2·2a → [14a](‡) → 12a corresponds to the reaction rate constant k(4) = 667.5 M(-1) s(-1) and is in very good agreement with experimental measurements. The potential energy surface analysis further shows that anhydride 7 is kinetically and thermodynamically unstable with regard to hydrolysis to HOBr and HOBrO(2) via transition state structure 14b. The transition state structure 14b is much more stable than 14a, and, hence, the formation of the "symmetrical anhydride" from bromous acid becomes an irreversible reaction for all practical purposes because 7 will instead be hydrolyzed as a "mixed anhydride" to afford HOBr and HOBrO(2). The mixed anhydride 8, BrO-BrO(2), does not play a significant role in bromous acid disproportionation.

Instabilities of a three-dimensional localized spot

We investigate the behavior of localized spots in three spatial dimensions in a model two-variable system describing the Belousov-Zhabotinsky reaction in water-in-oil microemulsion. We find three types of instabilities: splitting of a single spot (i) into two spots, (ii) into a torus, and (iii) into an unstable shell that splits almost immediately to six or eight new spots.