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Pérez-Llorca M, Müller M. Unlocking Nature's Rhythms: Insights into Secondary Metabolite Modulation by the Circadian Clock. Int J Mol Sci 2024; 25:7308. [PMID: 39000414 PMCID: PMC11241833 DOI: 10.3390/ijms25137308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Revised: 06/27/2024] [Accepted: 06/27/2024] [Indexed: 07/16/2024] Open
Abstract
Plants, like many other living organisms, have an internal timekeeper, the circadian clock, which allows them to anticipate photoperiod rhythms and environmental stimuli to optimally adjust plant growth, development, and fitness. These fine-tuned processes depend on the interaction between environmental signals and the internal interactive metabolic network regulated by the circadian clock. Although primary metabolites have received significant attention, the impact of the circadian clock on secondary metabolites remains less explored. Transcriptome analyses revealed that many genes involved in secondary metabolite biosynthesis exhibit diurnal expression patterns, potentially enhancing stress tolerance. Understanding the interaction mechanisms between the circadian clock and secondary metabolites, including plant defense mechanisms against stress, may facilitate the development of stress-resilient crops and enhance targeted management practices that integrate circadian agricultural strategies, particularly in the face of climate change. In this review, we will delve into the molecular mechanisms underlying circadian rhythms of phenolic compounds, terpenoids, and N-containing compounds.
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Affiliation(s)
- Marina Pérez-Llorca
- Department of Biology, Health and the Environment, Faculty of Pharmacy and Food Sciences, University of Barcelona, 08028 Barcelona, Spain
- Institute of Nutrition and Food Safety (INSA-UB), University of Barcelona, 08028 Barcelona, Spain
| | - Maren Müller
- Institute of Nutrition and Food Safety (INSA-UB), University of Barcelona, 08028 Barcelona, Spain
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Faculty of Biology, University of Barcelona, 08028 Barcelona, Spain
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2
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Satake A, Hagiwara T, Nagano AJ, Yamaguchi N, Sekimoto K, Shiojiri K, Sudo K. Plant Molecular Phenology and Climate Feedbacks Mediated by BVOCs. ANNUAL REVIEW OF PLANT BIOLOGY 2024; 75:605-627. [PMID: 38382906 DOI: 10.1146/annurev-arplant-060223-032108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Climate change profoundly affects the timing of seasonal activities of organisms, known as phenology. The impact of climate change is not unidirectional; it is also influenced by plant phenology as plants modify atmospheric composition and climatic processes. One important aspect of this interaction is the emission of biogenic volatile organic compounds (BVOCs), which link the Earth's surface, atmosphere, and climate. BVOC emissions exhibit significant diurnal and seasonal variations and are therefore considered essential phenological traits. To understand the dynamic equilibrium arising from the interplay between plant phenology and climate, this review presents recent advances in comprehending the molecular mechanisms underpinning plant phenology and its interaction with climate. We provide an overview of studies investigating molecular phenology, genome-wide gene expression analyses conducted in natural environments, and how these studies revolutionize the concept of phenology, shifting it from observable traits to dynamic molecular responses driven by gene-environment interactions. We explain how this knowledge can be scaled up to encompass plant populations, regions, and even the globe by establishing connections between molecular phenology, changes in plant distribution, species composition, and climate.
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Affiliation(s)
- Akiko Satake
- Department of Biology, Faculty of Science, Kyushu University, Fukuoka, Japan;
| | - Tomika Hagiwara
- Department of Biology, Faculty of Science, Kyushu University, Fukuoka, Japan;
| | - Atsushi J Nagano
- Faculty of Agriculture, Ryukoku University, Otsu, Japan
- Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan
| | - Nobutoshi Yamaguchi
- Division of Biological Science, Nara Institute of Science and Technology, Ikoma, Japan
| | - Kanako Sekimoto
- Graduate School of Nanobioscience, Yokohama City University, Yokohama, Japan
| | | | - Kengo Sudo
- Graduate School of Environmental Studies, Nagoya University, Nagoya, Japan
- Japan Agency for Marine-Earth Science and Technology, Yokohama, Japan
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3
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González-Cabanelas D, Perreca E, Rohwer JM, Schmidt A, Engl T, Raguschke B, Gershenzon J, Wright LP. Deoxyxylulose 5-Phosphate Synthase Does Not Play a Major Role in Regulating the Methylerythritol 4-Phosphate Pathway in Poplar. Int J Mol Sci 2024; 25:4181. [PMID: 38673766 PMCID: PMC11049974 DOI: 10.3390/ijms25084181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 03/26/2024] [Accepted: 03/29/2024] [Indexed: 04/28/2024] Open
Abstract
The plastidic 2-C-methylerythritol 4-phosphate (MEP) pathway supplies the precursors of a large variety of essential plant isoprenoids, but its regulation is still not well understood. Using metabolic control analysis (MCA), we examined the first enzyme of this pathway, 1-deoxyxylulose 5-phosphate synthase (DXS), in multiple grey poplar (Populus × canescens) lines modified in their DXS activity. Single leaves were dynamically labeled with 13CO2 in an illuminated, climate-controlled gas exchange cuvette coupled to a proton transfer reaction mass spectrometer, and the carbon flux through the MEP pathway was calculated. Carbon was rapidly assimilated into MEP pathway intermediates and labeled both the isoprene released and the IDP+DMADP pool by up to 90%. DXS activity was increased by 25% in lines overexpressing the DXS gene and reduced by 50% in RNA interference lines, while the carbon flux in the MEP pathway was 25-35% greater in overexpressing lines and unchanged in RNA interference lines. Isoprene emission was also not altered in these different genetic backgrounds. By correlating absolute flux to DXS activity under different conditions of light and temperature, the flux control coefficient was found to be low. Among isoprenoid end products, isoprene itself was unchanged in DXS transgenic lines, but the levels of the chlorophylls and most carotenoids measured were 20-30% less in RNA interference lines than in overexpression lines. Our data thus demonstrate that DXS in the isoprene-emitting grey poplar plays only a minor part in controlling flux through the MEP pathway.
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Affiliation(s)
- Diego González-Cabanelas
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany; (D.G.-C.); (A.S.); (B.R.); (J.G.); (L.P.W.)
| | - Erica Perreca
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany; (D.G.-C.); (A.S.); (B.R.); (J.G.); (L.P.W.)
| | - Johann M. Rohwer
- Laboratory for Molecular Systems Biology, Department of Biochemistry, Stellenbosch University, Private Bag X1, Matieland, Stellenbosch 7602, South Africa;
| | - Axel Schmidt
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany; (D.G.-C.); (A.S.); (B.R.); (J.G.); (L.P.W.)
| | - Tobias Engl
- Department of Insect Symbiosis, Max Plank Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany;
| | - Bettina Raguschke
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany; (D.G.-C.); (A.S.); (B.R.); (J.G.); (L.P.W.)
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany; (D.G.-C.); (A.S.); (B.R.); (J.G.); (L.P.W.)
| | - Louwrance P. Wright
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany; (D.G.-C.); (A.S.); (B.R.); (J.G.); (L.P.W.)
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4
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Qian J, Liao Y, Jian G, Jia Y, Zeng L, Gu D, Li H, Yang Y. Light induces an increasing release of benzyl nitrile against diurnal herbivore Ectropis grisescens Warren attack in tea (Camellia sinensis) plants. PLANT, CELL & ENVIRONMENT 2023; 46:3464-3480. [PMID: 37553868 DOI: 10.1111/pce.14687] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Revised: 07/27/2023] [Accepted: 08/01/2023] [Indexed: 08/10/2023]
Abstract
Herbivore-induced plant volatiles (HIPVs) are critical compounds that directly or indirectly regulate the tritrophic interactions among herbivores, natural enemies and plants. The synthesis and release of HIPVs are regulated by many biotic and abiotic factors. However, the mechanism by which multiple factors synergistically affect HIPVs release remains unclear. Tea plant (Camellia sinensis) is the object of this study because of its rich and varied volatile metabolites. In this study, benzyl nitrile was released from herbivore-attacked tea plants more in the daytime than at night, which was consistent with the feeding behaviour of tea geometrid (Ectropis grisescens Warren) larvae. The Y-tube olfactometer assay and insect resistance analysis revealed that benzyl nitrile can repel tea geometrid larvae and inhibit their growth. On the basis of enzyme activities in transiently transformed Nicotiana benthamiana plants, CsCYP79 was identified as a crucial regulator in the benzyl nitrile biosynthetic pathway. Light signalling-related transcription factor CsPIF1-like and the jasmonic acid (JA) signalling-related transcription factor CsMYC2 serve as the activator of CsCYP79 under light and damage conditions. Our study revealed that light (abiotic factor) and herbivore-induced damage (biotic stress) synergistically regulate the synthesis and release of benzyl nitrile to protect plants from diurnal herbivorous tea geometrid larvae.
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Affiliation(s)
- Jiajia Qian
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yinyin Liao
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
| | - Guotai Jian
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yongxia Jia
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
| | - Lanting Zeng
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, China
| | - Dachuan Gu
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hanxiang Li
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
| | - Yuhua Yang
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- South China National Botanical Garden, Guangzhou, China
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Yu J, Khomenko I, Biasioli F, Li M, Varotto C. A Novel Isoprene Synthase from the Monocot Tree Copernicia prunifera (Arecaceae) Confers Enhanced Drought Tolerance in Transgenic Arabidopsis. Int J Mol Sci 2023; 24:15329. [PMID: 37895009 PMCID: PMC10607627 DOI: 10.3390/ijms242015329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 09/18/2023] [Accepted: 10/17/2023] [Indexed: 10/29/2023] Open
Abstract
The capacity to emit isoprene, among other stresses, protects plants from drought, but the molecular mechanisms underlying this trait are only partly understood. The Arecaceae (palms) constitute a very interesting model system to test the involvement of isoprene in enhancing drought tolerance, as their high isoprene emissions may have contributed to make them hyperdominant in neotropical dry forests, characterized by recurrent and extended periods of drought stress. In this study we isolated and functionally characterized a novel isoprene synthase, the gene responsible for isoprene biosynthesis, from Copernicia prunifera, a palm from seasonally dry tropical forests. When overexpressed in the non-emitter Arabidopsis thaliana, CprISPS conferred significant levels of isoprene emission, together with enhanced tolerance to water limitation throughout plant growth and development, from germination to maturity. CprISPS overexpressors displayed higher germination, cotyledon/leaf greening, water usage efficiency, and survival than WT Arabidopsis under various types of water limitation. This increased drought tolerance was accompanied by a marked transcriptional up-regulation of both ABA-dependent and ABA-independent key drought response genes. Taken together, these results demonstrate the capacity of CprISPS to enhance drought tolerance in Arabidopsis and suggest that isoprene emission could have evolved in Arecaceae as an adaptive mechanism against drought.
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Affiliation(s)
- Jiamei Yu
- Biodiversity, Ecology and Environment Area, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, 38098 Trento, Italy;
- Department of Biology, University of Padova, 35121 Padova, Italy
| | - Iuliia Khomenko
- Food and Nutrition Area, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, 38098 Trento, Italy; (I.K.); (F.B.)
| | - Franco Biasioli
- Food and Nutrition Area, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, 38098 Trento, Italy; (I.K.); (F.B.)
| | - Mingai Li
- Biodiversity, Ecology and Environment Area, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, 38098 Trento, Italy;
- National Biodiversity Future Center (NBFC), 90133 Palermo, Italy
| | - Claudio Varotto
- Biodiversity, Ecology and Environment Area, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, 38098 Trento, Italy;
- National Biodiversity Future Center (NBFC), 90133 Palermo, Italy
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6
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Frede K, Winkelmann S, Busse L, Baldermann S. The effect of LED light quality on the carotenoid metabolism and related gene expression in the genus Brassica. BMC PLANT BIOLOGY 2023; 23:328. [PMID: 37340342 DOI: 10.1186/s12870-023-04326-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 06/01/2023] [Indexed: 06/22/2023]
Abstract
BACKGROUND New vegetable production systems, such as vertical farming, but also well-established in-door production methods led to the implementation of light emitting diodes (LEDs). LEDs are the most important light sources in modern indoor-production systems and offer the possibility for enhancing growth and specific metabolites in planta. Even though the number of studies investigating the effects of LED lighting on vegetable quality has increased, the knowledge about genus variability is limited. In the present study, the effect of different LED spectra on the metabolic and transcriptional level of the carotenoid metabolism in five different Brassica sprouts was investigated. Cruciferous vegetables are one of the main food crops worldwide. Pak choi (Brassica rapa ssp. chinensis), cauliflower (Brassica oleracea var. botrytis), Chinese cabbage (Brassica rapa ssp. pekinensis), green kale (Brassica oleracea ssp. sabellica) and turnip cabbage (Brassica oleracea spp. gongylodes) sprouts were grown under a combination of blue & white LEDs, red & white LEDs or only white LEDs to elucidate the genus-specific carotenoid metabolism. RESULTS Genus-specific changes in plant weight and on the photosynthetic pigment levels as well as transcript levels have been detected. Interestingly, the transcript levels of the three investigated carotenoid biosynthesis genes phytoene synthase (PSY), β-cyclase (βLCY) and β-carotene hydroxylase (βOHASE1) were increased under the combination of blue & white LEDs in the majority of the Brassica sprouts. However, only in pak choi, the combination of blue & white LEDs enhanced the carotenoid levels by 14% in comparison to only white LEDs and by ~ 19% in comparison to red & white LEDs. CONCLUSIONS The effects of light quality differ within a genus which leads to the conclusion that production strategies have to be developed for individual species and cultivars to fully benefit from LED technology.
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Affiliation(s)
- Katja Frede
- Leibniz Institute of Vegetable and Ornamental Crops, Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany.
| | - Sara Winkelmann
- Leibniz Institute of Vegetable and Ornamental Crops, Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany
| | - Linda Busse
- Leibniz Institute of Vegetable and Ornamental Crops, Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany
| | - Susanne Baldermann
- Leibniz Institute of Vegetable and Ornamental Crops, Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany
- University of Bayreuth; Faculty of Life Sciences: Food, Nutrition & Health; Professorship for Food Metabolome, Fritz-Hornschuch-Straße 13, 95326, Kulmbach, Germany
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7
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Frede K, Baldermann S. Accumulation of carotenoids in Brassica rapa ssp. chinensis by a high proportion of blue in the light spectrum. Photochem Photobiol Sci 2022; 21:1947-1959. [PMID: 35895283 DOI: 10.1007/s43630-022-00270-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 07/08/2022] [Indexed: 06/15/2023]
Abstract
Carotenoids have the potential to improve the human health which leads to an increasing consumer demand for carotenoid-rich vegetables. The implementation of new, less energy-consuming vegetable production systems using artificial light such as light-emitting diodes (LEDs) is essential. In the present study, pak choi (Brassica rapa ssp. chinensis 'Black Behi') sprouts were grown under a combination of blue and white LEDs, red and white LEDs or only white LEDs for 7 days. Total carotenoid levels of ~ 700 ng/mg DM were measured under white LEDs. The combination of blue and white LEDs increased the carotenoid levels by ~ 15% in comparison to only white LEDs, while red and white LEDs reduced them. The transcript levels of important carotenoid metabolism-related genes were enhanced under blue and white LEDs. Phytoene measurement after Norflurazon-treatment, a phytoene desaturase inhibitor, revealed that phytoene increased by 38% (37.5 µM Norflurazon) and by 56% (50.0 µM Norflurazon) after growth under blue and white LEDs in comparison to only white LEDs suggesting an up-regulation of the upper carotenoid biosynthetic pathway. Thus, the transcript levels and the enhanced phytoene levels correlated well with the higher accumulation of carotenoids under blue and white LEDs. Furthermore, a comparison to sprouts grown under blue LEDs without additional white LEDs showed that blue light alone does not increase the phytoene levels after Norflurazon-treatment. Overall, this study demonstrated a beneficial effect of a higher blue light percentage in growing carotenoid-rich pak choi sprouts, and implies that an increased biosynthesis within the upper carotenoid biosynthetic pathway is responsible for the enhanced carotenoid accumulation.
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Affiliation(s)
- Katja Frede
- Leibniz Institute of Vegetable and Ornamental Crops, Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany.
| | - Susanne Baldermann
- Leibniz Institute of Vegetable and Ornamental Crops, Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany
- Faculty of Life Sciences, Food, Nutrition and Health, Professorship for Food Metabolome, University of Bayreuth, Fritz-Hornschuch-Straße 13, 95326, Kulmbach, Germany
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8
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Mu Z, Llusià J, Zeng J, Zhang Y, Asensio D, Yang K, Yi Z, Wang X, Peñuelas J. An Overview of the Isoprenoid Emissions From Tropical Plant Species. FRONTIERS IN PLANT SCIENCE 2022; 13:833030. [PMID: 35668805 PMCID: PMC9163954 DOI: 10.3389/fpls.2022.833030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 04/26/2022] [Indexed: 06/15/2023]
Abstract
Terrestrial vegetation is the largest contributor of isoprenoids (a group of biogenic volatile organic compounds (BVOCs)) to the atmosphere. BVOC emission data comes mostly from temperate regions, and less is known about BVOC emissions from tropical vegetation, even though it is estimated to be responsible for >70% of BVOC emissions. This review summarizes the available data and our current understanding of isoprenoid emissions from tropical plant species and the spatial and temporal variation in emissions, which are strongly species-specific and regionally variable. Emission models lacking foliar level data for tropical species need to revise their parameters to account for seasonal and diurnal variation due to differences in dependencies on temperature and light of emissions from plants in other ecosystems. More experimental information and determining how emission capacity varies during foliar development are warranted to account for seasonal variations more explicitly.
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Affiliation(s)
- Zhaobin Mu
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
| | - Joan Llusià
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
| | - Jianqiang Zeng
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Yanli Zhang
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
- Center for Excellence in Regional Atmospheric Environment, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Dolores Asensio
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
| | - Kaijun Yang
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
| | - Zhigang Yi
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Xinming Wang
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
- Center for Excellence in Regional Atmospheric Environment, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Barcelona, Spain
- CREAF, Barcelona, Spain
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Isoprene Emission Influences the Proteomic Profile of Arabidopsis Plants under Well-Watered and Drought-Stress Conditions. Int J Mol Sci 2022; 23:ijms23073836. [PMID: 35409196 PMCID: PMC8998555 DOI: 10.3390/ijms23073836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Revised: 03/25/2022] [Accepted: 03/29/2022] [Indexed: 02/06/2023] Open
Abstract
Isoprene is a small lipophilic molecule synthesized in plastids and abundantly released into the atmosphere. Isoprene-emitting plants are better protected against abiotic stresses, but the mechanism of action of isoprene is still under debate. In this study, we compared the physiological responses and proteomic profiles of Arabidopsis which express the isoprene synthase (ISPS) gene and emit isoprene with those of non-emitting plants under both drought-stress (DS) and well-watered (WW) conditions. We aimed to investigate whether isoprene-emitting plants displayed a different proteomic profile that is consistent with the metabolic changes already reported. Only ISPS DS plants were able to maintain the same photosynthesis and fresh weight of WW plants. LC-MS/MS-based proteomic analysis revealed changes in protein abundance that were dependent on the capacity for emitting isoprene in addition to those caused by the DS. The majority of the proteins changed in response to the interaction between DS and isoprene emission. These include proteins that are associated with the activation of secondary metabolisms leading to ABA, trehalose, and proline accumulations. Overall, our proteomic data suggest that isoprene exerts its protective mechanism at different levels: under drought stress, isoprene affects the abundance of chloroplast proteins, confirming a strong direct or indirect antioxidant action and also modulates signaling and hormone pathways, especially those controlling ABA synthesis. Unexpectedly, isoprene also alters membrane trafficking.
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10
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Pu X, Dong X, Li Q, Chen Z, Liu L. An update on the function and regulation of methylerythritol phosphate and mevalonate pathways and their evolutionary dynamics. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2021; 63:1211-1226. [PMID: 33538411 DOI: 10.1111/jipb.13076] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 02/02/2021] [Indexed: 05/29/2023]
Abstract
Isoprenoids are among the largest and most chemically diverse classes of organic compounds in nature and are involved in the processes of photosynthesis, respiration, growth, development, and plant responses to stress. The basic building block units for isoprenoid synthesis-isopentenyl diphosphate and its isomer dimethylallyl diphosphate-are generated by the mevalonate (MVA) and methylerythritol phosphate (MEP) pathways. Here, we summarize recent advances on the roles of the MEP and MVA pathways in plant growth, development and stress responses, and attempt to define the underlying gene networks that orchestrate the MEP and MVA pathways in response to developmental or environmental cues. Through phylogenomic analysis, we also provide a new perspective on the evolution of the plant isoprenoid pathway. We conclude that the presence of the MVA pathway in plants may be associated with the transition from aquatic to subaerial and terrestrial environments, as lineages for its core components are absent in green algae. The emergence of the MVA pathway has acted as a key evolutionary event in plants that facilitated land colonization and subsequent embryo development, as well as adaptation to new and varied environments.
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Affiliation(s)
- Xiaojun Pu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, 434200, China
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
| | - Xiumei Dong
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, 434200, China
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
| | - Qing Li
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
- School of Life Sciences, Yunnan University, Kunming, 650091, China
| | - Zexi Chen
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Li Liu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, 434200, China
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
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11
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Baggesen N, Li T, Seco R, Holst T, Michelsen A, Rinnan R. Phenological stage of tundra vegetation controls bidirectional exchange of BVOCs in a climate change experiment on a subarctic heath. GLOBAL CHANGE BIOLOGY 2021; 27:2928-2944. [PMID: 33709612 PMCID: PMC8251604 DOI: 10.1111/gcb.15596] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Accepted: 02/08/2021] [Indexed: 06/08/2023]
Abstract
Traditionally, biogenic volatile organic compound (BVOC) emissions are often considered a unidirectional flux, from the ecosystem to the atmosphere, but recent studies clearly show the potential for bidirectional exchange. Here we aimed to investigate how warming and leaf litter addition affect the bidirectional exchange (flux) of BVOCs in a long-term field experiment in the Subarctic. We also assessed changes in net BVOC fluxes in relation to the time of day and the influence of different plant phenological stages. The study was conducted in a full factorial experiment with open top chamber warming and annual litter addition treatments in a tundra heath in Abisko, Northern Sweden. After 18 years of treatments, ecosystem-level net BVOC fluxes were measured in the experimental plots using proton-transfer-reaction time-of-flight mass spectrometry (PTR-ToF-MS). The warming treatment increased monoterpene and isoprene emissions by ≈50%. Increasing temperature, due to diurnal variations, can both increase BVOC emission and simultaneously, increase ecosystem uptake. For any given treatment, monoterpene, isoprene, and acetone emissions also increased with increasing ambient air temperatures caused by diurnal variability. Acetaldehyde, methanol, and sesquiterpenes decreased likely due to a deposition flux. For litter addition, only a significant indirect effect on isoprene and monoterpene fluxes (decrease by ~50%-75%) was observed. Litter addition may change soil moisture conditions, leading to changes in plant species composition and biomass, which could subsequently result in changes to BVOC emission compositions. Phenological stages significantly affected fluxes of methanol, isoprene and monoterpenes. We suggest that plant phenological stages differ in impacts on BVOC net emissions, but ambient air temperature and photosynthetically active radiation (PAR) also interact and influence BVOC net emissions differently. Our results may also suggest that BVOC fluxes are not only a response to changes in temperature and light intensity, as the circadian clock also affects emission rates.
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Affiliation(s)
- Nanna Baggesen
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagen ØDenmark
- Center for Permafrost (CENPERM)University of CopenhagenCopenhagen KDenmark
| | - Tao Li
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagen ØDenmark
- Center for Permafrost (CENPERM)University of CopenhagenCopenhagen KDenmark
| | - Roger Seco
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagen ØDenmark
- Center for Permafrost (CENPERM)University of CopenhagenCopenhagen KDenmark
| | - Thomas Holst
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagen ØDenmark
- Department of Physical Geography and Ecosystem ScienceCentre for GeoBiosphere ScienceLund UniversityLundSweden
| | - Anders Michelsen
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagen ØDenmark
- Center for Permafrost (CENPERM)University of CopenhagenCopenhagen KDenmark
| | - Riikka Rinnan
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagen ØDenmark
- Center for Permafrost (CENPERM)University of CopenhagenCopenhagen KDenmark
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12
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Mitra S, Estrada-Tejedor R, Volke DC, Phillips MA, Gershenzon J, Wright LP. Negative regulation of plastidial isoprenoid pathway by herbivore-induced β-cyclocitral in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2021; 118:e2008747118. [PMID: 33674379 PMCID: PMC7958287 DOI: 10.1073/pnas.2008747118] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Insect damage to plants is known to up-regulate defense and down-regulate growth processes. While there are frequent reports about up-regulation of defense signaling and production of defense metabolites in response to herbivory, much less is understood about the mechanisms by which growth and carbon assimilation are down-regulated. Here we demonstrate that insect herbivory down-regulates the 2-C-methyl-D-erythritol-4-phosphate (MEP) pathway in Arabidopsis (Arabidopsis thaliana), a pathway making primarily metabolites for use in photosynthesis. Simulated feeding by the generalist herbivore Spodoptera littoralis suppressed flux through the MEP pathway and decreased steady-state levels of the intermediate 1-deoxy-D-xylulose 5-phosphate (DXP). Simulated herbivory also increased reactive oxygen species content which caused the conversion of β-carotene to β-cyclocitral (βCC). This volatile oxidation product affected the MEP pathway by directly inhibiting DXP synthase (DXS), the rate-controlling enzyme of the MEP pathway in Arabidopsis and inducing plant resistance against S. littoralis βCC inhibited both DXS transcript accumulation and DXS activity. Molecular models suggested that βCC binds to DXS at the binding site for the thymine pyrophosphate cofactor and blocks catalysis, which was confirmed by direct assays of βCC with the purified DXS protein in vitro. Another intermediate of the MEP pathway, 2-C-methyl-D-erythritol-2, 4-cyclodiphosphate, which is known to stimulate salicylate defense signaling, showed greater accumulation and enhanced export out of the plastid in response to simulated herbivory. Together, our work implicates βCC as a signal of herbivore damage in Arabidopsis that increases defense and decreases flux through the MEP pathway, a pathway involved in growth and carbon assimilation.
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Affiliation(s)
- Sirsha Mitra
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany;
- Department of Botany, Savitribai Phule Pune University, Pune-411007, India
| | - Roger Estrada-Tejedor
- Pharmaceutical Chemistry Group, IQS School of Engineering, Universitat Ramon Llull, 08017 Barcelona, Spain
| | - Daniel C Volke
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Michael A Phillips
- Department of Biology, University of Toronto Mississauga, Mississauga, ON L5L 1C6, Canada
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
| | - Louwrance P Wright
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany;
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13
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Pavarini DP, Semir J, Lopes JLC, da Silva RR, Lopes NP. Time-Scale Shifting of Volatile Semiochemical Levels in Wild Type Lychnophora ericoides (Brazilian arnica) and Pollinator Records. PLANTA MEDICA 2021; 87:101-112. [PMID: 33276406 DOI: 10.1055/a-1320-4556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Lychnophora ericoides is a Brazilian folk phytomedicine from Cerrado's "campus rupestris". Its volatile organic compounds includes bisabolene-derivatives as major compounds. Herein we provide the chemical profiling of constitutive volatile sesquiterpenes from L. ericoides leaves, timeframe emissions surveys, and pollinators records. In situ samples of L. ericoides were harvested. A headspace-solid phase micro extraction method of pre-concentration was optimized. Identification was done through GC-MS. Isolation and structural elucidation were performed whenever necessary. Pollinators were registered in pictures and video. Short time-series and harmonic regressions determined rhythms of single compounds, and average chromatographic signal area was used to determine mono and sesquiterpene rhythms. Concluding, optimized headspace-solid phase micro extraction method of terpenes level analysis was reached. α-Pinene, β-pinene, α-terpinene, para-cymene, limonene, γ-terpinene, terpinen-4-ol, dehydro-sesquicineole, and β-guaiene were identified using GC-MS data. 11-dehydro cadinol and ortho-acetoxy bisabolol were elucidated. Sesquiterpenes concentrations were higher due to temperature rise, lower leaf age, and flowering seasons. Harmonic regressions determined that daylight might control levels of terpenes. Hummingbird, hemiptera insects, and wasps were recorded visiting Compositae capitulum for the first time. We studied nondomestic plants from in situ conditions and concluded that bisabolene-derivative levels were more abundant than monoterpenes during flowering throughout the summer.
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Affiliation(s)
- Daniel Petinatti Pavarini
- Núcleo de Pesquisas em Produtos Naturais e Sintéticos, Departamento de Ciências Biomoleculares, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil
| | - João Semir
- Instituto de Biologia, Departamento de Botânica, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - João Luís Callegari Lopes
- Núcleo de Pesquisas em Produtos Naturais e Sintéticos, Departamento de Ciências Biomoleculares, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil
| | - Ricardo Roberto da Silva
- Núcleo de Pesquisas em Produtos Naturais e Sintéticos, Departamento de Ciências Biomoleculares, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil
| | - Norberto Peporine Lopes
- Núcleo de Pesquisas em Produtos Naturais e Sintéticos, Departamento de Ciências Biomoleculares, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil
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14
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Plant Volatile Organic Compounds Evolution: Transcriptional Regulation, Epigenetics and Polyploidy. Int J Mol Sci 2020; 21:ijms21238956. [PMID: 33255749 PMCID: PMC7728353 DOI: 10.3390/ijms21238956] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 11/18/2020] [Accepted: 11/23/2020] [Indexed: 12/15/2022] Open
Abstract
Volatile organic compounds (VOCs) are emitted by plants as a consequence of their interaction with biotic and abiotic factors, and have a very important role in plant evolution. Floral VOCs are often involved in defense and pollinator attraction. These interactions often change rapidly over time, so a quick response to those changes is required. Epigenetic factors, such as DNA methylation and histone modification, which regulate both genes and transcription factors, might trigger adaptive responses to these evolutionary pressures as well as regulating the rhythmic emission of VOCs through circadian clock regulation. In addition, transgenerational epigenetic effects and whole genome polyploidy could modify the generation of VOCs’ profiles of offspring, contributing to long-term evolutionary shifts. In this article, we review the available knowledge about the mechanisms that may act as epigenetic regulators of the main VOC biosynthetic pathways, and their importance in plant evolution.
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15
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Xu C, Wei H, Movahedi A, Sun W, Ma X, Li D, Yin T, Zhuge Q. Evaluation, characterization, expression profiling, and functional analysis of DXS and DXR genes of Populus trichocarpa. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 142:94-105. [PMID: 31279136 DOI: 10.1016/j.plaphy.2019.05.034] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Revised: 05/31/2019] [Accepted: 05/31/2019] [Indexed: 05/27/2023]
Abstract
1-Deoxy-D-xylulose-5-phosphate synthasse (DXS) and 1-deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) are key enzymes in terpenoid biosynthesis. DXS catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate (DXP) from pyruvate and D-glyceraldehyde-3-phosphate. DXR catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate (MEP) from DXP. Previous studies of the DXS and DXR genes have focused on herbs, such as Arabidopsis thaliana, Salvia miltiorrhiza, and Amomum villosum, but few studies have been conducted on woody plants. For that reason, we chose Populus trichocarpa as a model woody plant for investigating the DXS and DXR genes. PtDXS exhibited the highest expression level in leaves and the lowest expression in roots. PtDXR showed maximum expression in young leaves, and the lowest expression in mature leaves. The expression profiles revealed by RT-PCR following different elicitor treatments such as abscisic acid, NaCl, PEG6000, H2O2, and cold stress showed that PtDXS and PtDXR were elicitor-responsive genes. Our results showed that the PtDXS gene exhibited diurnal changes, but PtDXR did not. Moreover, overexpression of PtDXR in transgenic poplars improved tolerance to abiotic and biotic stresses. Those results showed that the PtDXR encoded a functional protein, and widely participates in plant growth and development, stress physiological process.
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Affiliation(s)
- Chen Xu
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China; Nanjing Key Laboratory of Quality and Safety of Agricultural Products, Nanjing Xiaozhuang University, Nanjing, 211171, China
| | - Hui Wei
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China
| | - Ali Movahedi
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China
| | - Weibo Sun
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China
| | - Xiaoxing Ma
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China
| | - Dawei Li
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China
| | - Tongming Yin
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China
| | - Qiang Zhuge
- Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics & Biotechnology, Ministry of Education, Nanjing Forestry University. Nanjing, 210037, China.
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16
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Parveen S, Iqbal MA, Mutanda I, Rashid MHU, Inafuku M, Oku H. Plant hormone effects on isoprene emission from tropical tree in Ficus septica. PLANT, CELL & ENVIRONMENT 2019; 42:1715-1728. [PMID: 30610754 DOI: 10.1111/pce.13513] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 12/23/2018] [Accepted: 12/26/2018] [Indexed: 06/09/2023]
Abstract
Plant hormones and the circadian rhythm have been implicated in coordinated control of isoprene emission in plants. To gain insights into the signalling networks, foliar application of plant hormones was conducted in a native emitter, Ficus septica. Spraying of 50 μM jasmonic acid (JA) gradually decreased isoprene emission by 88% compared with initial levels within 5 days, and emission increased after relief from JA application. We further explored the molecular regulatory mechanism of isoprene emission by analysing photosynthetic rate, gene expression of 2-C-methyl-D-erythrytol 4-phosphate (MEP) pathway, hormone signalling and circadian rhythm processes, and metabolite pool sizes of MEP pathway. Results show that isoprene emission strongly correlated with isoprene synthase (IspS) gene expression and IspS protein levels over the period of JA treatment, indicating transcriptional and possible translational modulation of IspS by JA. Application of JA coordinately modulated genes in the auxin, cytokinin (CK), and circadian rhythm signal transduction pathways. Among the transcriptional factors analysed, MYC2 (JA) and LHY (circadian clock) negatively correlated with isoprene emission. Putative cis-elements predicted on IspS promoter (G-box for MYC2 and circadian for LHY) supports our proposal that isoprene emission is regulated by coordinated transcriptional modulation of IspS gene by phytohormone and circadian rhythm signalling.
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Affiliation(s)
- Shahanaz Parveen
- The United Graduate School of Agricultural Sciences, Kagoshima University, Kagoshima, Japan
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, Japan
- Faculty of Agriculture, Sher-e-Bangla Agricultural University, Dhaka, Bangladesh
| | - Md Asif Iqbal
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, Japan
- Graduate School of Agriculture, University of the Ryukyus, Okinawa, Japan
| | - Ishmael Mutanda
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, Japan
| | - Md Harun-Ur- Rashid
- Faculty of Agriculture, Sher-e-Bangla Agricultural University, Dhaka, Bangladesh
| | - Masashi Inafuku
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, Japan
| | - Hirosuke Oku
- Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, Japan
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17
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de Souza VF, Niinemets Ü, Rasulov B, Vickers CE, Duvoisin Júnior S, Araújo WL, Gonçalves JFDC. Alternative Carbon Sources for Isoprene Emission. TRENDS IN PLANT SCIENCE 2018; 23:1081-1101. [PMID: 30472998 PMCID: PMC6354897 DOI: 10.1016/j.tplants.2018.09.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Revised: 09/03/2018] [Accepted: 09/25/2018] [Indexed: 05/07/2023]
Abstract
Isoprene and other plastidial isoprenoids are produced primarily from recently assimilated photosynthates via the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. However, when environmental conditions limit photosynthesis, a fraction of carbon for MEP pathway can come from extrachloroplastic sources. The flow of extrachloroplastic carbon depends on the species and on leaf developmental and environmental conditions. The exchange of common phosphorylated intermediates between the MEP pathway and other metabolic pathways can occur via plastidic phosphate translocators. C1 and C2 carbon intermediates can contribute to chloroplastic metabolism, including photosynthesis and isoprenoid synthesis. Integration of these metabolic processes provide an example of metabolic flexibility, and results in the synthesis of primary metabolites for plant growth and secondary metabolites for plant defense, allowing effective use of environmental resources under multiple stresses.
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Affiliation(s)
- Vinícius Fernandes de Souza
- Laboratory of Plant Physiology and Biochemistry, National Institute for Amazonian Research (INPA), Manaus, AM 69011-970, Brazil; University of Amazonas State, Manaus, AM 69050-010, Brazil
| | - Ülo Niinemets
- Department of Crop Science and Plant Biology, Estonian University of Life Sciences, Tartu 51006, Estonia; Estonian Academy of Sciences, 10130 Tallinn, Estonia
| | - Bahtijor Rasulov
- Department of Crop Science and Plant Biology, Estonian University of Life Sciences, Tartu 51006, Estonia; Institute of Technology, University of Tartu, Tartu, Estonia
| | - Claudia E Vickers
- Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St Lucia, QLD 4072, Australia; Commonwealth Scientific and Industrial Research Organisation (CSIRO) Synthetic Biology Future Science Platform, EcoSciences Precinct, Brisbane, QLD 4001, Australia
| | | | - Wagner L Araújo
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil
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18
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Frede K, Schreiner M, Zrenner R, Graefe J, Baldermann S. Carotenoid biosynthesis of pak choi (Brassica rapa ssp. chinensis) sprouts grown under different light-emitting diodes during the diurnal course. Photochem Photobiol Sci 2018; 17:1289-1300. [PMID: 30065986 DOI: 10.1039/c8pp00136g] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Light-emitting diodes (LEDs) are considered the future of greenhouse lighting. This study investigates the carotenoid concentrations of pak choi sprouts after growth under blue, red and white LEDs at six different time points. Furthermore, the diurnal changes of RNA transcripts of key genes of the carotenoid biosynthesis pathway as well as of the carotenoid cleavage dioxygenase 4 (CCD4) gene and of the transcription factor genes elongated hypocotyl 5 (HY5) and circadian clock associated 1 (CCA1) were investigated. The carotenoid concentrations were steady throughout the day, but showed a small maximum in the afternoon. An average total carotenoid concentration of 536 ± 29 ng mg-1 DM produced under white LEDs was measured, which is comparable to previously described field-grown levels. The carotenoid concentrations were slightly lower under blue or red LEDs. Moreover, the diurnal RNA transcript rhythms of most of the carotenoid biosynthesis genes showed an increase during the light period, which can be correlated to the carotenoid maxima in the afternoon. Blue LEDs caused the highest transcriptional induction of biosynthetic genes as well as of CCD4, thereby indicating an increased flux through the pathway. In addition, the highest levels of HY5 transcripts and CCA1 transcripts were determined under blue LEDs.
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Affiliation(s)
- K Frede
- Leibniz Institute of Vegetable and Ornamental Crops, Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979 Großbeeren, Germany.
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Biochemical characterization of isoprene synthase from Ipomoea batatas. J Biosci Bioeng 2018; 127:138-144. [PMID: 30190176 DOI: 10.1016/j.jbiosc.2018.07.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2018] [Revised: 07/23/2018] [Accepted: 07/24/2018] [Indexed: 10/28/2022]
Abstract
The bio-production process of isoprene, an essential chemical used in industry, is strongly limited by isoprene synthase. In our previous work, relatively high isoprene production was observed with isoprene synthase from Ipomoea batatas (IspSib). In this work the biochemical properties of IspSib were analyzed and compared with those of isoprene synthase from Populus alba (IspSpa) and other species. Firstly, IspSib and IspSpa were expressed, purified, and identified by SDS-PAGE and western blot analysis. Secondly, pH and temperature dependence of IspSib were performed and an optimum pH of 8.6 and an optimum temperature of 42 °C were resulted. Mg2+ with optimum concentration of 56 mM was proved to be needed for enzyme activation. In addition, in vivo and in vitro study of the thermostabilities of IspSib and IspSpa were performed. The enzyme activity of IspSib and IspSpa dropped very rapidly after incubation at 30 °C; almost 80% enzyme activity of IspSib was lost after 20 min of incubation. Moreover, the Michaelis-Menten constant was measured. IspSib showed a lower Km, 0.2 mM, and a higher kcat, 0.37 s-1, as compared with IspSpa. The high catalytic efficiency, which was reflected by the high kcat/Km ratio, indicates that IspSib is a good candidate for the bio-isoprene production, while its thermal instability remains as a challenge. Enzyme engineering efforts, such as direction evolution or semi-rational evolution, are planned for further research.
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Regulation of the Rhythmic Emission of Plant Volatiles by the Circadian Clock. Int J Mol Sci 2017; 18:ijms18112408. [PMID: 29137171 PMCID: PMC5713376 DOI: 10.3390/ijms18112408] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Revised: 10/31/2017] [Accepted: 11/10/2017] [Indexed: 11/25/2022] Open
Abstract
Like other organisms, plants have endogenous biological clocks that enable them to organize their metabolic, physiological, and developmental processes. The representative biological clock is the circadian system that regulates daily (24-h) rhythms. Circadian-regulated changes in growth have been observed in numerous plants. Evidence from many recent studies indicates that the circadian clock regulates a multitude of factors that affect plant metabolites, especially emitted volatiles that have important ecological functions. Here, we review recent progress in research on plant volatiles showing rhythmic emission under the regulation of the circadian clock, and on how the circadian clock controls the rhythmic emission of plant volatiles. We also discuss the potential impact of other factors on the circadian rhythmic emission of plant volatiles.
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21
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Zheng R, Liu C, Wang Y, Luo J, Zeng X, Ding H, Xiao W, Gan J, Wang C. Expression of MEP Pathway Genes and Non-volatile Sequestration Are Associated with Circadian Rhythm of Dominant Terpenoids Emission in Osmanthus fragrans Lour. Flowers. FRONTIERS IN PLANT SCIENCE 2017; 8:1869. [PMID: 29163594 PMCID: PMC5670350 DOI: 10.3389/fpls.2017.01869] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Accepted: 10/13/2017] [Indexed: 05/30/2023]
Abstract
Osmanthus fragrans Lour. is one of the top 10 traditional ornamental flowers in China famous for its unique fragrance. Preliminary study proved that the terpenoids including ionone, linalool, and ocimene and their derivatives are the dominant aroma-active compounds that contribute greatly to the scent bouquet. Pollination observation implies the emission of aromatic terpenoids may follow a circadian rhythm. In this study, we investigated the variation of volatile terpenoids and its potential regulators. The results showed that both volatile and non-volatile terpenoids presented circadian oscillation with high emission or accumulation during the day and low emission or accumulation during the night. The volatile terpenoids always increased to reach their maximum values at 12:00 h, while free and glycosylated compounds continued increasing throughout the day. The depletion of non-volatile pool might provide the substrates for volatile emission at 0:00-6:00, suggesting the sequestration of non-volatile compounds acted like a buffer regulating emission of terpenoids. Further detection of MEP pathway genes demonstrated that their expressions increased significantly in parallel with the evident increase of both volatile and non-volatile terpenoids during the day, indicating that the gene expressions were also closely associated with terpenoid formation. Thus, the expression of MEP pathway genes and internal sequestration both played crucial roles in modulating circadian rhythm of terpenoid emission in O. fragrans.
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Affiliation(s)
- Riru Zheng
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Cai Liu
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Yanli Wang
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Jing Luo
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Hubei Key Laboratory of Economic Forest Germplasm Improvement and Resources Comprehensive Utilization, Hubei Collaborative Innovation Center for the Characteristic Resources Exploitation of Dabie Mountains, Huanggang Normal University, Huanggang, China
| | - Xiangling Zeng
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Haiqin Ding
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Wei Xiao
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Jianping Gan
- Hubei Key Laboratory of Economic Forest Germplasm Improvement and Resources Comprehensive Utilization, Hubei Collaborative Innovation Center for the Characteristic Resources Exploitation of Dabie Mountains, Huanggang Normal University, Huanggang, China
| | - Caiyun Wang
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
- Hubei Key Laboratory of Economic Forest Germplasm Improvement and Resources Comprehensive Utilization, Hubei Collaborative Innovation Center for the Characteristic Resources Exploitation of Dabie Mountains, Huanggang Normal University, Huanggang, China
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Poli M, Salvi S, Li M, Varotto C. Selection of reference genes suitable for normalization of qPCR data under abiotic stresses in bioenergy crop Arundo donax L. Sci Rep 2017; 7:10719. [PMID: 28878356 PMCID: PMC5587670 DOI: 10.1038/s41598-017-11019-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Accepted: 08/16/2017] [Indexed: 02/08/2023] Open
Abstract
Suitable reference gene selection in qRT-PCR is a key pre-requisite to produce reliable data in gene expression analyses. In this study, novel primers for six commonly used reference genes (AC1, TLF, Act2, TUB α, EF-1α and GAPDH) plus two new candidates (pDUF221 and RPN6) were designed and comparatively tested for expression stability under abiotic stresses (osmotic, heavy metal and heat shock) in shoot, root and their combination of Arundo donax L., a raising non-food energy crop. Expression stability rankings from the most to the least stable gene in each condition and in two tissues (young shoots and roots) were generated with geNorm, NormFinder and BestKeeper programs. All programs provided similar rankings and, strikingly, in most cases identified one of the new candidates, RPN6, as the most suitable reference gene. This novel set of reliable references allows to choose either the best combination of reference genes across multiple stress/organ conditions or to select condition-specific genes that can improve the quality of qRT-PCR analysis. This work provides a solid basis for the functional characterization of A. donax, by enabling accurate quantification of the transcriptional responsiveness under a series of common stress conditions of any gene of interest in this promising biomass/bioenergy species.
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Affiliation(s)
- Michele Poli
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, S. Michele all'Adige (TN), Italy.,Department of Agricultural Sciences, University of Bologna, Bologna, Italy
| | - Silvio Salvi
- Department of Agricultural Sciences, University of Bologna, Bologna, Italy
| | - Mingai Li
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, S. Michele all'Adige (TN), Italy.
| | - Claudio Varotto
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, S. Michele all'Adige (TN), Italy.
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23
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Giacomuzzi V, Cappellin L, Nones S, Khomenko I, Biasioli F, Knight AL, Angeli S. Diel rhythms in the volatile emission of apple and grape foliage. PHYTOCHEMISTRY 2017; 138:104-115. [PMID: 28291597 DOI: 10.1016/j.phytochem.2017.03.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2016] [Revised: 02/28/2017] [Accepted: 03/04/2017] [Indexed: 05/09/2023]
Abstract
This study investigated the diel emission of volatile organic compounds (VOCs) from intact apple (Malus x domestica Borkh., cv. Golden Delicious) and grape (Vitis vinifera L., cv. Pinot Noir) foliage. Volatiles were monitored continuously for 48 h by proton transfer reaction - time of flight - mass spectrometry (PTR-ToF-MS). In addition, volatiles were collected by closed-loop-stripping-analysis (CLSA) and characterized by gas chromatography-mass spectrometry (GC-MS) after 1 h and again 24 and 48 h later. Fourteen and ten volatiles were characterized by GC-MS in apple and grape, respectively. The majority of these were terpenes, followed by green leaf volatiles, and aromatic compounds. The PTR-ToF-MS identified 10 additional compounds and established their diel emission rhythms. The most abundant volatiles displaying a diel rhythm included methanol and dimethyl sulfide in both plants, acetone in grape, and mono-, homo- and sesquiterpenes in apple. The majority of volatiles were released from both plants during the photophase; whereas methanol, CO2, methyl-butenol and benzeneacetaldehyde were released at significantly higher levels during the scotophase. Acetaldehyde, ethanol, and some green leaf volatiles showed distinct emission bursts in both plants following the daily light switch-off. These new results obtained with a combined analytical approach broaden our understanding of the rhythms of constitutive volatile release from two important horticultural crops. In particular, diel emission of sulfur and nitrogen-containing volatiles are reported here for the first time in these two crops.
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Affiliation(s)
- Valentino Giacomuzzi
- Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università 5, 39100 Bolzano, Italy
| | - Luca Cappellin
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all'Adige, Italy; School of Engineering and Applied Sciences, Harvard University, 29 Oxford Street, 02138 Cambridge, Massachusetts, USA
| | - Stefano Nones
- Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università 5, 39100 Bolzano, Italy
| | - Iuliia Khomenko
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all'Adige, Italy
| | - Franco Biasioli
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all'Adige, Italy
| | - Alan L Knight
- USDA, Agricultural Research Service, 5230 Konnowac Pass Rd, 98951 Wapato, Washington, USA
| | - Sergio Angeli
- Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università 5, 39100 Bolzano, Italy.
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24
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Kemper K, Hirte M, Reinbold M, Fuchs M, Brück T. Opportunities and challenges for the sustainable production of structurally complex diterpenoids in recombinant microbial systems. Beilstein J Org Chem 2017; 13:845-854. [PMID: 28546842 PMCID: PMC5433224 DOI: 10.3762/bjoc.13.85] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Accepted: 04/11/2017] [Indexed: 01/24/2023] Open
Abstract
With over 50.000 identified compounds terpenes are the largest and most structurally diverse group of natural products. They are ubiquitous in bacteria, plants, animals and fungi, conducting several biological functions such as cell wall components or defense mechanisms. Industrial applications entail among others pharmaceuticals, food additives, vitamins, fragrances, fuels and fuel additives. Central building blocks of all terpenes are the isoprenoid compounds isopentenyl diphosphate and dimethylallyl diphosphate. Bacteria like Escherichia coli harbor a native metabolic pathway for these isoprenoids that is quite amenable for genetic engineering. Together with recombinant terpene biosynthesis modules, they are very suitable hosts for heterologous production of high value terpenes. Yet, in contrast to the number of extracted and characterized terpenes, little is known about the specific biosynthetic enzymes that are involved especially in the formation of highly functionalized compounds. Novel approaches discussed in this review include metabolic engineering as well as site-directed mutagenesis to expand the natural terpene landscape. Focusing mainly on the validation of successful integration of engineered biosynthetic pathways into optimized terpene producing Escherichia coli, this review shall give an insight in recent progresses regarding manipulation of mostly diterpene synthases.
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Affiliation(s)
- Katarina Kemper
- Professorship for Industrial Biocatalysis, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Max Hirte
- Professorship for Industrial Biocatalysis, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Markus Reinbold
- Professorship for Industrial Biocatalysis, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Monika Fuchs
- Professorship for Industrial Biocatalysis, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Thomas Brück
- Professorship for Industrial Biocatalysis, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany
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25
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Jadaun JS, Sangwan NS, Narnoliya LK, Singh N, Bansal S, Mishra B, Sangwan RS. Over-expression of DXS gene enhances terpenoidal secondary metabolite accumulation in rose-scented geranium and Withania somnifera: active involvement of plastid isoprenogenic pathway in their biosynthesis. PHYSIOLOGIA PLANTARUM 2017; 159:381-400. [PMID: 27580641 DOI: 10.1111/ppl.12507] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2016] [Revised: 04/18/2016] [Accepted: 08/05/2016] [Indexed: 05/08/2023]
Abstract
Rose-scented geranium (Pelargonium spp.) is one of the most important aromatic plants and is well known for its diverse perfumery uses. Its economic importance is due to presence of fragrance rich essential oil in its foliage. The essential oil is a mixture of various volatile phytochemicals which are mainly terpenes (isoprenoids) in nature. In this study, on the geranium foliage genes related to isoprenoid biosynthesis (DXS, DXR and HMGR) were isolated, cloned and confirmed by sequencing. Further, the first gene of 2-C-methyl-d-erythritol-4-phosphate (MEP) pathway, 1-deoxy-d-xylulose-5-phosphate synthase (GrDXS), was made full length by using rapid amplification of cDNA ends strategy. GrDXS contained a 2157 bp open reading frame that encoded a polypeptide of 792 amino acids having calculated molecular weight 77.5 kDa. This study is first report on heterologous expression and kinetic characterization of any gene from this economically important plant. Expression analysis of these genes was performed in different tissues as well as at different developmental stages of leaves. In response to external elicitors, such as methyl jasmonate, salicylic acid, light and wounding, all the three genes showed differential expression profiles. Further GrDXS was over expressed in the homologous (rose-scented geranium) as well as in heterologous (Withania somnifera) plant systems through genetic transformation approach. The over-expression of GrDXS led to enhanced secondary metabolites production (i.e. essential oil in rose-scented geranium and withanolides in W. somnifera). To the best of our knowledge, this is the first report showing the expression profile of the three genes related to isoprenoid biosynthesis pathways operated in rose-scented geranium as well as functional characterization study of any gene from rose-scented geranium through a genetic transformation system.
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Affiliation(s)
- Jyoti Singh Jadaun
- Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow 226015, India
| | - Neelam S Sangwan
- Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow 226015, India
| | - Lokesh K Narnoliya
- Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow 226015, India
| | - Neha Singh
- Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow 226015, India
| | - Shilpi Bansal
- Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow 226015, India
| | - Bhawana Mishra
- Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow 226015, India
| | - Rajender Singh Sangwan
- Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow 226015, India
- Center of Innovative and Applied Bioprocessing (A National Institute under Department of Biotechnology, Govt. of India), C-127, Phase-8, Industrial Area, S.A.S. Nagar, Mohali - 160071, Punjab, India
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26
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The Emission of the Floral Scent of Four Osmanthus fragrans Cultivars in Response to Different Temperatures. Molecules 2017; 22:molecules22030430. [PMID: 28282901 PMCID: PMC6155510 DOI: 10.3390/molecules22030430] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Revised: 03/05/2017] [Accepted: 03/06/2017] [Indexed: 12/05/2022] Open
Abstract
Floral scent is an important part of volatile organic compounds (VOCs) emitted from plants, and is influenced by many environmental and endogenous factors. To investigate the influence of temperature on the emission of the floral scent of Osmanthus fragrans, the number of chemical compounds and their relative release amounts from four cultivars of O. fragrans under different temperature treatments, were identified using the solid-phase microextraction (SPME) technique and gas chromatography-mass spectrometry (GC-MS) in this study. Results revealed that the numbers and release amounts of floral scent components were significantly influenced by different temperatures, and depend on different cultivars and different types of compounds. Overall, most cultivars had the largest number of chemical compounds in 19 °C and the numbers of chemical compounds decreased with the increase or decrease in the temperature. Alcohols and ketones were the two main kinds of compounds responding to temperature change. The response of a specific chemical compound to temperature change was different in four cultivars. Generally, linalool, α-ionone, β-ionone, and γ-decalactone accounted for the highest proportion in the nine main compounds, and changes of these four chemical compounds to different temperatures had obvious contributions to the floral scent of O. fragrans. The results obtained provide evidence that temperatures can greatly influence the emission of floral scent.
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27
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Mutanda I, Inafuku M, Saitoh S, Iwasaki H, Fukuta M, Watanabe K, Oku H. Temperature controls on the basal emission rate of isoprene in a tropical tree Ficus septica: exploring molecular regulatory mechanisms. PLANT, CELL & ENVIRONMENT 2016; 39:2260-2275. [PMID: 27425779 DOI: 10.1111/pce.12797] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2016] [Revised: 06/26/2016] [Accepted: 07/05/2016] [Indexed: 06/06/2023]
Abstract
Isoprene emission from plants is very sensitive to environmental temperature both at short-term and long-term scales. Our previous study demonstrated suppression of isoprene emission by cold temperatures in a high emitting tropical tree Ficus septica and revealed a strong correlation of emission to isoprene synthase (IspS) protein levels. When challenged with decreasing daily temperatures from 30 to 12 °C, F. septica completely stopped isoprene emission at 12 °C, only to recover on the second day after re-exposure to 30 °C. Here, we explored this regulation of isoprene emission in response to environmental temperature by a comprehensive analysis of transcriptome data, gene expressions and metabolite pools of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. MEP pathway genes and metabolites dynamics did not support substrate-level limitations as major control over observed basal emission, but transcriptome data, network inferences and putative regulatory elements on IspS promoter suggested transcriptional regulation of IspS gene through circadian rhythm and phytohormone signalling processes. Expression levels of 29 genes involved in these pathways were examined by quantitative real-time PCR. We propose that temperature controls over basal isoprene emission at a time-scale of hours to few days are regulated by phytohormone-mediated transcriptional modulation of IspS gene under synchronization by the circadian clock.
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Affiliation(s)
- Ishmael Mutanda
- United Graduate School of Agricultural Sciences, Kagoshima University, Korimoto 1-21-24, Kagoshima, 890-0065, Japan
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa, 903-0213, Japan
| | - Masashi Inafuku
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa, 903-0213, Japan
| | - Seikoh Saitoh
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa, 903-0213, Japan
| | - Hironori Iwasaki
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa, 903-0213, Japan
| | - Masakazu Fukuta
- Graduate School of Agriculture, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa, 903-0213, Japan
| | - Keiichi Watanabe
- Department of Applied Biological Sciences, Saga University, Saga, 840-8502, Japan
| | - Hirosuke Oku
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa, 903-0213, Japan.
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28
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Mutanda I, Saitoh S, Inafuku M, Aoyama H, Takamine T, Satou K, Akutsu M, Teruya K, Tamotsu H, Shimoji M, Sunagawa H, Oku H. Gene expression analysis of disabled and re-induced isoprene emission by the tropical tree Ficus septica before and after cold ambient temperature exposure. TREE PHYSIOLOGY 2016; 36:873-882. [PMID: 27126228 DOI: 10.1093/treephys/tpw032] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2016] [Accepted: 03/12/2016] [Indexed: 06/05/2023]
Abstract
Isoprene is the most abundant type of nonmethane, biogenic volatile organic compound in the atmosphere, and it is produced mainly by terrestrial plants. The tropical tree species Ficus septica Burm. F. (Rosales: Moraceae) has been shown to cease isoprene emissions when exposed to temperatures of 12 °C or lower and to re-induce isoprene synthesis upon subsequent exposure to temperatures of 30 °C or higher for 24 h. To elucidate the regulation of genes underlying the disabling and then induction of isoprene emission during acclimatization to ambient temperature, we conducted gene expression analyses of F. septica plants under changing temperature using quantitative real-time polymerase chain reaction and western blotting. Transcription levels were analyzed for 17 genes that are involved in metabolic pathways potentially associated with isoprene biosynthesis, including isoprene synthase (ispS). The protein levels of ispS were also measured. Changes in transcription and protein levels of the ispS gene, but not in the other assessed genes, showed identical temporal patterns to isoprene emission capacity under the changing temperature regime. The ispS protein levels strongly and positively correlated with isoprene emission capacity (R(2) = 0.92). These results suggest that transcriptional regulation of ispS gave rise to the temporal variation in isoprene emission capacity in response to changing temperature.
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Affiliation(s)
- Ishmael Mutanda
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan; United Graduate School of Agricultural Sciences, Kagoshima University, Korimoto 1-21-24, Kagoshima 890-0065, Japan
| | - Seikoh Saitoh
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan;
| | - Masashi Inafuku
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan
| | - Hiroaki Aoyama
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan; Faculty of Science, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan
| | - Tomonori Takamine
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan; Graduate School of Agriculture, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan
| | - Kazuhito Satou
- Okinawa Institute of Advanced Sciences, Suzaki 5-1, Uruma, Okinawa 904-2234, Japan
| | - Masako Akutsu
- Tokai University, Toroku 9-1-1, Higashi-ku, Kumamoto 862-8652, Japan
| | - Kuniko Teruya
- Okinawa Institute of Advanced Sciences, Suzaki 5-1, Uruma, Okinawa 904-2234, Japan
| | - Hinako Tamotsu
- Okinawa Institute of Advanced Sciences, Suzaki 5-1, Uruma, Okinawa 904-2234, Japan
| | - Makiko Shimoji
- Okinawa Institute of Advanced Sciences, Suzaki 5-1, Uruma, Okinawa 904-2234, Japan
| | - Haruki Sunagawa
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan; Okinawa Prefectural Agricultural Research Center, Makabe 820, Itoman, Okinawa 901-0336, Japan
| | - Hirosuke Oku
- Tropical Biosphere Research Center, University of the Ryukyus, Senbaru 1, Nishihara, Okinawa 903-0213, Japan
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29
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Harvey CM, Sharkey TD. Exogenous isoprene modulates gene expression in unstressed Arabidopsis thaliana plants. PLANT, CELL & ENVIRONMENT 2016; 39:1251-1263. [PMID: 26477606 DOI: 10.1111/pce.12660] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2015] [Revised: 09/30/2015] [Accepted: 10/07/2015] [Indexed: 06/05/2023]
Abstract
Isoprene is a well-studied volatile hemiterpene that protects plants from abiotic stress through mechanisms that are not fully understood. The antioxidant and membrane stabilizing potential of isoprene are the two most commonly invoked mechanisms. However, isoprene also affects phenylpropanoid metabolism, suggesting an additional role as a signalling molecule. In this study, microarray-based gene expression profiling reveals transcriptional reprogramming of Arabidopsis thaliana plants fumigated for 24 h with a physiologically relevant concentration of isoprene. Functional enrichment analysis of fumigated plants revealed enhanced heat- and light-stress-responsive processes in response to isoprene. Isoprene induced a network enriched in ERF and WRKY transcription factors, which may play a role in stress tolerance. The isoprene-induced up-regulation of phenylpropanoid biosynthetic genes was specifically confirmed using quantitative reverse transcription polymerase chain reaction. These results support a role for isoprene as a signalling molecule, in addition to its possible roles as an antioxidant and membrane thermoprotectant.
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Affiliation(s)
- Christopher M Harvey
- Department of Biochemistry and Molecular Biology, Michigan State University, 603 Wilson Rd., East Lansing, MI, 48824, USA
| | - Thomas D Sharkey
- Department of Biochemistry and Molecular Biology, Michigan State University, 603 Wilson Rd., East Lansing, MI, 48824, USA
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30
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Harris A, Owen SM, Sleep D, Pereira MDGDS. Constitutive changes in pigment concentrations: implications for estimating isoprene emissions using the photochemical reflectance index. PHYSIOLOGIA PLANTARUM 2016; 156:190-200. [PMID: 26249646 DOI: 10.1111/ppl.12361] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Revised: 05/26/2015] [Accepted: 05/29/2015] [Indexed: 06/04/2023]
Abstract
The photochemical reflectance index (PRI), through its relationship with light use efficiency (LUE) and xanthophyll cycle activity, has recently been shown to hold potential for tracking isoprene emissions from vegetation. However, both PRI and isoprene emissions can also be influenced by changes in carotenoid pigment concentrations. Xanthophyll cycle activity and changes in carotenoid concentrations operate over different timescales, but the importance of constitutive changes in pigment concentrations for accurately estimating isoprene emissions using PRI is unknown. To clarify the physiological mechanisms behind the PRI-isoprene relationship, the light environment of potted Salix viminalis (osier willow) trees was modified to induce acclimation in photosynthetic rates, phytopigments, isoprene emissions and PRI. Acclimation resulted in differences in pigment concentrations, isoprene emissions and PRI. Constitutive changes in carotenoid concentration were significantly correlated with both isoprene emissions and PRI, suggesting that the relationship between PRI and isoprene emissions is significantly influenced by constitutive pigment changes. Consequently knowledge regarding how isoprene emissions are affected by both longer term changes in total carotenoid concentrations and shorter term dynamic adjustments of LUE is required to facilitate interpretation of PRI for monitoring isoprene emissions.
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Affiliation(s)
- Angela Harris
- Geography, School of Education, Environment and Development, The University of Manchester, Manchester M13 9PL, UK
| | | | - Darren Sleep
- Centre for Ecology & Hydrology, Lancaster Environment Centre, Lancaster LA1 4YQ, UK
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31
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Schuman MC, Valim HA, Joo Y. Temporal Dynamics of Plant Volatiles: Mechanistic Bases and Functional Consequences. SIGNALING AND COMMUNICATION IN PLANTS 2016. [DOI: 10.1007/978-3-319-33498-1_1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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32
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Maja MM, Kasurinen A, Holopainen T, Kontunen-Soppela S, Oksanen E, Holopainen JK. Volatile organic compounds emitted from silver birch of different provenances across a latitudinal gradient in Finland. TREE PHYSIOLOGY 2015; 35:975-986. [PMID: 26093370 DOI: 10.1093/treephys/tpv052] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2014] [Accepted: 05/11/2015] [Indexed: 06/04/2023]
Abstract
Climate warming is having an impact on distribution, acclimation and defence capability of plants. We compared the emission rate and composition of volatile organic compounds (VOCs) from silver birch (Betula pendula (Roth)) provenances along a latitudinal gradient in a common garden experiment over the years 2012 and 2013. Micropropagated silver birch saplings from three provenances were acquired along a gradient of 7° latitude and planted at central (Joensuu 62°N) and northern (Kolari 67°N) sites. We collected VOCs emitted by shoots and assessed levels of herbivore damage of three genotypes of each provenance on three occasions at the central site and four occasions at the northern site. In 2012, trees of all provenances growing at the central site had higher total VOC emission rates than the same provenances growing at the northern site; in 2013 the reverse was true, thus indicating a variable effect of latitude. Trees of the southern provenance had lower VOC emission rates than trees of the central and northern provenances during both sampling years. However, northward or southward translocation itself had no significant effect on the total VOC emission rates, and no clear effect on insect herbivore damage. When VOC blend composition was studied, trees of all provenances usually emitted more green leaf volatiles at the northern site and more sesquiterpenes at the central site. The monoterpene composition of emissions from trees of the central provenance was distinct from that of the other provenances. In summary, provenance translocation did not have a clear effect in the short-term on VOC emissions and herbivory was not usually intense at the lower latitude. Our data did not support the hypothesis that trees growing at lower latitudes would experience more intense herbivory, and therefore allocate resources to chemical defence in the form of inducible VOC emissions.
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Affiliation(s)
- Mengistu M Maja
- Department of Environmental Science, University of Eastern Finland, PO Box 127, Kuopio, Finland
| | - Anne Kasurinen
- Department of Environmental Science, University of Eastern Finland, PO Box 127, Kuopio, Finland
| | - Toini Holopainen
- Department of Environmental Science, University of Eastern Finland, PO Box 127, Kuopio, Finland
| | | | - Elina Oksanen
- Department of Biology, University of Eastern Finland, PO Box 111, Joensuu, Finland
| | - Jarmo K Holopainen
- Department of Environmental Science, University of Eastern Finland, PO Box 127, Kuopio, Finland
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33
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Lindwall F, Faubert P, Rinnan R. Diel Variation of Biogenic Volatile Organic Compound Emissions--A field Study in the Sub, Low and High Arctic on the Effect of Temperature and Light. PLoS One 2015; 10:e0123610. [PMID: 25897519 PMCID: PMC4405581 DOI: 10.1371/journal.pone.0123610] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2014] [Accepted: 03/04/2015] [Indexed: 11/29/2022] Open
Abstract
Many hours of sunlight in the midnight sun period suggest that significant amounts of biogenic volatile organic compounds (BVOCs) may be released from arctic ecosystems during night-time. However, the emissions from these ecosystems are rarely studied and limited to point measurements during daytime. We measured BVOC emissions during 24-hour periods in the field using a push-pull chamber technique and collection of volatiles in adsorbent cartridges followed by analysis with gas chromatography-mass spectrometry. Five different arctic vegetation communities were examined: high arctic heaths dominated by Salix arctica and Cassiope tetragona, low arctic heaths dominated by Salix glauca and Betula nana and a subarctic peatland dominated by the moss Warnstorfia exannulata and the sedge Eriophorum russeolum. We also addressed how climate warming affects the 24-hour emission and how the daytime emissions respond to sudden darkness. The emissions from the high arctic sites were lowest and had a strong diel variation with almost no emissions during night-time. The low arctic sites as well as the subarctic site had a more stable release of BVOCs during the 24-hour period with night-time emissions in the same range as those during the day. These results warn against overlooking the night period when considering arctic emissions. During the day, the quantity of BVOCs and the number of different compounds emitted was higher under ambient light than in darkness. The monoterpenes α-fenchene, α-phellandrene, 3-carene and α-terpinene as well as isoprene were absent in dark measurements during the day. Warming by open top chambers increased the emission rates both in the high and low arctic sites, forewarning higher emissions in a future warmer climate in the Arctic.
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Affiliation(s)
- Frida Lindwall
- Terrestrial Ecology section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
- Center for permafrost, Department of Geoscience and Natural resource Management, University of Copenhagen, Copenhagen, Denmark
| | - Patrick Faubert
- Chaire en éco-conseil, Département des sciences fondamentales, Université du Québec à Chicoutimi, Chicoutimi, Canada
| | - Riikka Rinnan
- Terrestrial Ecology section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
- Center for permafrost, Department of Geoscience and Natural resource Management, University of Copenhagen, Copenhagen, Denmark
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Zhou F, Sun TH, Zhao L, Pan XW, Lu S. The bZIP transcription factor HY5 interacts with the promoter of the monoterpene synthase gene QH6 in modulating its rhythmic expression. FRONTIERS IN PLANT SCIENCE 2015; 6:304. [PMID: 25983739 PMCID: PMC4415419 DOI: 10.3389/fpls.2015.00304] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2015] [Accepted: 04/15/2015] [Indexed: 05/18/2023]
Abstract
The Artemisia annua L. β-pinene synthase QH6 was previously determined to be circadian-regulated at the transcriptional level, showing a rhythmic fluctuation of steady-state transcript abundances. Here we isolated both the genomic sequence and upstream promoter region of QH6. Different regulatory elements, such as G-box (TGACACGTGGCA, -421 bp from the translation initiation site) which might have effects on rhythmic gene expression, were found. Using the yeast one-hybrid and electrophoretic mobility shift assay (EMSA), we confirmed that the bZIP transcription factor HY5 binds to this motif of QH6. Studies with promoter truncations before and after this motif suggested that this G-box was important for the diurnal fluctuation of the transgenic β-glucuronidase gene (GUS) transcript abundance in Arabidopsis thaliana. GUS gene driven by the promoter region immediately after G-box showed an arrhythmic expression in both light/dark (LD) and constant dark (DD) conditions, whereas the control with G-box retained its fluctuation in both LD and DD. We further transformed A. thaliana with the luciferase gene (LUC) driven by an 1400 bp fragment upstream QH6 with its G-box intact or mutated, respectively. The luciferase activity assay showed that a peak in the early morning disappeared in the mutant. Gene expression analysis also demonstrated that the rhythmic expression of LUC was abolished in the hy5-1 mutant.
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Affiliation(s)
| | | | | | | | - Shan Lu
- *Correspondence: Shan Lu, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, 22 Hankou Road, Nanjing 210093, China
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Conchou L, Cabioch L, Rodriguez LJV, Kjellberg F. Daily rhythm of mutualistic pollinator activity and scent emission in Ficus septica: ecological differentiation between co-occurring pollinators and potential consequences for chemical communication and facilitation of host speciation. PLoS One 2014; 9:e103581. [PMID: 25105796 PMCID: PMC4126690 DOI: 10.1371/journal.pone.0103581] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Accepted: 07/04/2014] [Indexed: 11/18/2022] Open
Abstract
The mutualistic interaction between Ficus and their pollinating agaonid wasps constitutes an extreme example of plant-insect co-diversification. Most Ficus species are locally associated with a single specific agaonid wasp species. Specificity is ensured by each fig species emitting a distinctive attractive scent. However, cases of widespread coexistence of two agaonid wasp species on the same Ficus species are documented. Here we document the coexistence of two agaonid wasp species in Ficus septica: one yellow-colored and one black-colored. Our results suggest that their coexistence is facilitated by divergent ecological traits. The black species is longer-lived (a few more hours) and is hence active until later in the afternoon. Some traits of the yellow species must compensate for this advantage for their coexistence to be stable. In addition, we show that the composition of the scent emitted by receptive figs changes between sunrise and noon. The two species may therefore be exposed to somewhat different ranges of receptive fig scent composition and may consequently diverge in the way they perceive and/or respond to scents. Whether such situations may lead to host plant speciation is an open question.
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Affiliation(s)
- Lucie Conchou
- CEFE UMR 5175, CNRS - Université de Montpellier - Université Paul-Valéry Montpellier – EPHE, Montpellier, France
- * E-mail:
| | - Léa Cabioch
- CEFE UMR 5175, CNRS - Université de Montpellier - Université Paul-Valéry Montpellier – EPHE, Montpellier, France
| | - Lillian J. V. Rodriguez
- CEFE UMR 5175, CNRS - Université de Montpellier - Université Paul-Valéry Montpellier – EPHE, Montpellier, France
- Institute of Biology, University of the Philippines Diliman, Quezon City, Philippines
| | - Finn Kjellberg
- CEFE UMR 5175, CNRS - Université de Montpellier - Université Paul-Valéry Montpellier – EPHE, Montpellier, France
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Wright LP, Rohwer JM, Ghirardo A, Hammerbacher A, Ortiz-Alcaide M, Raguschke B, Schnitzler JP, Gershenzon J, Phillips MA. Deoxyxylulose 5-Phosphate Synthase Controls Flux through the Methylerythritol 4-Phosphate Pathway in Arabidopsis. PLANT PHYSIOLOGY 2014; 165:1488-1504. [PMID: 24987018 PMCID: PMC4119033 DOI: 10.1104/pp.114.245191] [Citation(s) in RCA: 117] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Accepted: 06/26/2014] [Indexed: 05/18/2023]
Abstract
The 2-C-methylerythritol 4-phosphate (MEP) pathway supplies precursors for plastidial isoprenoid biosynthesis including carotenoids, redox cofactor side chains, and biogenic volatile organic compounds. We examined the first enzyme of this pathway, 1-deoxyxylulose 5-phosphate synthase (DXS), using metabolic control analysis. Multiple Arabidopsis (Arabidopsis thaliana) lines presenting a range of DXS activities were dynamically labeled with 13CO2 in an illuminated, climate-controlled, gas exchange cuvette. Carbon was rapidly assimilated into MEP pathway intermediates, but not into the mevalonate pathway. A flux control coefficient of 0.82 was calculated for DXS by correlating absolute flux to enzyme activity under photosynthetic steady-state conditions, indicating that DXS is the major controlling enzyme of the MEP pathway. DXS manipulation also revealed a second pool of a downstream metabolite, 2-C-methylerythritol-2,4-cyclodiphosphate (MEcDP), metabolically isolated from the MEP pathway. DXS overexpression led to a 3- to 4-fold increase in MEcDP pool size but to a 2-fold drop in maximal labeling. The existence of this pool was supported by residual MEcDP levels detected in dark-adapted transgenic plants. Both pools of MEcDP are closely modulated by DXS activity, as shown by the fact that the concentration control coefficient of DXS was twice as high for MEcDP (0.74) as for 1-deoxyxylulose 5-phosphate (0.35) or dimethylallyl diphosphate (0.34). Despite the high flux control coefficient for DXS, its overexpression led to only modest increases in isoprenoid end products and in the photosynthetic rate. Diversion of flux via MEcDP may partly explain these findings and suggests new opportunities to engineer the MEP pathway.
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Affiliation(s)
- Louwrance P Wright
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Johann M Rohwer
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Andrea Ghirardo
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Almuth Hammerbacher
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Miriam Ortiz-Alcaide
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Bettina Raguschke
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Jörg-Peter Schnitzler
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
| | - Michael A Phillips
- Department of Biochemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., A.H., B.R., J.G.);Department of Biochemistry, Stellenbosch University, 7602 Stellenbosch, South Africa (J.M.R.);Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Zentrum, 85764 Neuherberg, Germany (A.G., J.-P.S.); andPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics (Consorci CSIC-IRTA-UAB-UB), 08193 Bellaterra, Barcelona, Spain (M.O., M.A.P.)
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Ghirardo A, Wright LP, Bi Z, Rosenkranz M, Pulido P, Rodríguez-Concepción M, Niinemets Ü, Brüggemann N, Gershenzon J, Schnitzler JP. Metabolic flux analysis of plastidic isoprenoid biosynthesis in poplar leaves emitting and nonemitting isoprene. PLANT PHYSIOLOGY 2014; 165:37-51. [PMID: 24590857 PMCID: PMC4012595 DOI: 10.1104/pp.114.236018] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2014] [Accepted: 03/03/2014] [Indexed: 05/20/2023]
Abstract
The plastidic 2-C-methyl-D-erythritol-4-phosphate (MEP) pathway is one of the most important pathways in plants and produces a large variety of essential isoprenoids. Its regulation, however, is still not well understood. Using the stable isotope 13C-labeling technique, we analyzed the carbon fluxes through the MEP pathway and into the major plastidic isoprenoid products in isoprene-emitting and transgenic isoprene-nonemitting (NE) gray poplar (Populus×canescens). We assessed the dependence on temperature, light intensity, and atmospheric [CO2]. Isoprene biosynthesis was by far (99%) the main carbon sink of MEP pathway intermediates in mature gray poplar leaves, and its production required severalfold higher carbon fluxes compared with NE leaves with almost zero isoprene emission. To compensate for the much lower demand for carbon, NE leaves drastically reduced the overall carbon flux within the MEP pathway. Feedback inhibition of 1-deoxy-D-xylulose-5-phosphate synthase activity by accumulated plastidic dimethylallyl diphosphate almost completely explained this reduction in carbon flux. Our data demonstrate that short-term biochemical feedback regulation of 1-deoxy-d-xylulose-5-phosphate synthase activity by plastidic dimethylallyl diphosphate is an important regulatory mechanism of the MEP pathway. Despite being relieved from the large carbon demand of isoprene biosynthesis, NE plants redirected only approximately 0.5% of this saved carbon toward essential nonvolatile isoprenoids, i.e. β-carotene and lutein, most probably to compensate for the absence of isoprene and its antioxidant properties.
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Affiliation(s)
- Andrea Ghirardo
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Louwrance Peter Wright
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Zhen Bi
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Maaria Rosenkranz
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Pablo Pulido
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Manuel Rodríguez-Concepción
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Ülo Niinemets
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Nicolas Brüggemann
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
| | - Jonathan Gershenzon
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (A.G., Z.B., M.R., J.-P.S.)
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (L.P.W., J.G.)
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain (P.P., M.R.-C.)
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51014 Tartu, Estonia (Ü.N.); and
- Institute of Bio- and Geosciences-Agrosphere (IBG-3), Forschungszentrum Jülich, 52425 Juelich, Germany (N.B.)
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Sun Z, Niinemets Ü, Hüve K, Rasulov B, Noe SM. Elevated atmospheric CO2 concentration leads to increased whole-plant isoprene emission in hybrid aspen (Populus tremula × Populus tremuloides). THE NEW PHYTOLOGIST 2013; 198:788-800. [PMID: 23442171 DOI: 10.1111/nph.12200] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2012] [Accepted: 01/27/2013] [Indexed: 06/01/2023]
Abstract
Effects of elevated atmospheric [CO2] on plant isoprene emissions are controversial. Relying on leaf-scale measurements, most models simulating isoprene emissions in future higher [CO2] atmospheres suggest reduced emission fluxes. However, combined effects of elevated [CO2] on leaf area growth, net assimilation and isoprene emission rates have rarely been studied on the canopy scale, but stimulation of leaf area growth may largely compensate for possible [CO2] inhibition reported at the leaf scale. This study tests the hypothesis that stimulated leaf area growth leads to increased canopy isoprene emission rates. We studied the dynamics of canopy growth, and net assimilation and isoprene emission rates in hybrid aspen (Populus tremula × Populus tremuloides) grown under 380 and 780 μmol mol(-1) [CO2]. A theoretical framework based on the Chapman-Richards function to model canopy growth and numerically compare the growth dynamics among ambient and elevated atmospheric [CO2]-grown plants was developed. Plants grown under elevated [CO2] had higher C : N ratio, and greater total leaf area, and canopy net assimilation and isoprene emission rates. During ontogeny, these key canopy characteristics developed faster and stabilized earlier under elevated [CO2]. However, on a leaf area basis, foliage physiological traits remained in a transient state over the whole experiment. These results demonstrate that canopy-scale dynamics importantly complements the leaf-scale processes, and that isoprene emissions may actually increase under higher [CO2] as a result of enhanced leaf area production.
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Affiliation(s)
- Zhihong Sun
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu, 51014, Estonia
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu, 51014, Estonia
| | - Katja Hüve
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu, 51014, Estonia
| | - Bahtijor Rasulov
- Institute of Molecular and Cell Biology, University of Tartu, Riia 23, Tartu, 510101, Estonia
| | - Steffen M Noe
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, Tartu, 51014, Estonia
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Pacifico F, Folberth GA, Jones CD, Harrison SP, Collins WJ. Sensitivity of biogenic isoprene emissions to past, present, and future environmental conditions and implications for atmospheric chemistry. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/2012jd018276] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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40
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Kooke R, Keurentjes JJB. Multi-dimensional regulation of metabolic networks shaping plant development and performance. JOURNAL OF EXPERIMENTAL BOTANY 2012; 63:3353-65. [PMID: 22140247 DOI: 10.1093/jxb/err373] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The metabolome is an integral part of a plant's life cycle and determines for a large part its external phenotype. It is the final, internal product of chemical interactions, obtained through developmental, genetic, and environmental inputs, and as such, it defines the state of a plant in terms of development and performance. Understanding its regulation will provide knowledge and new insights into the biochemical pathways and genetic interactions that shape the plant and its surroundings. In this review, we will focus on four dimensions that contribute to the huge diversity of metabolomes and we will illustrate how this diversity shapes the plant in terms of development and performance: (i) temporal regulation: the metabolome is extremely dynamic and temporal changes in the environment can have an immense impact on its composition; (ii) spatial regulation: metabolites can be very specific, in both quantitative and qualitative terms, to specialized organs, tissues, and cell types; (iii) environmental regulation: the metabolic profile of plants is highly dependent on environmental signals, such as light, temperature, and nutrients, and very susceptible to biotic and abiotic stresses; and (iv) genetic regulation: the biosynthesis, structure, and accumulation of metabolites have a genetic origin, and there is quantitative and qualitative variation for metabolomes within a species. We will address the contribution of these dimensions to the wide diversity of metabolomes and highlight how the multi-dimensional regulation of metabolism defines the plant's phenotype.
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Affiliation(s)
- R Kooke
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, Wageningen, The Netherlands
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Sun Z, Copolovici L, Niinemets Ü. Can the capacity for isoprene emission acclimate to environmental modifications during autumn senescence in temperate deciduous tree species Populus tremula? JOURNAL OF PLANT RESEARCH 2012; 125:263-274. [PMID: 21584787 DOI: 10.1007/s10265-011-0429-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2011] [Accepted: 04/20/2011] [Indexed: 05/30/2023]
Abstract
Changes in isoprene emission (Φ(isoprene)), and foliage photosynthetic (A) rates, isoprene precursor dimethylallyldiphosphate (DMADP), and nitrogen and carbon contents were studied from late summer to intensive leaf fall in Populus tremula to gain insight into the emission controls by temperature and endogenous, senescence-induced, modifications. Methanol emissions, characterizing degradation of cell wall pectins, were also measured. A rapid reduction in Φ(isoprene) and A of 60-70% of the initial value was observed in response to a rapid reduction of ambient temperature by ca. 15°C (cold stress). Later phases of senescence were associated with further reductions in Φ(isoprene) and A, with simultaneous major decrease in nitrogen content. However, during episodes of temperature increase, A and in particular, Φ(isoprene) partly recovered. Variation in Φ(isoprene) during senescence was correlated with average temperature of preceding days, with the highest degree of explained variance observed with average temperature of 6 days. Throughout the study, methanol emissions were small, but a large burst of methanol emission was associated with leaf yellowing and abscission. Overall, these data demonstrate that the capacity for isoprene emission can adjust to environmental conditions in senescing leaves as well, but the responsiveness is low compared with mid-season and is also affected by stress.
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Affiliation(s)
- Zhihong Sun
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, 51014 Tartu, Estonia
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Vranová E, Coman D, Gruissem W. Structure and dynamics of the isoprenoid pathway network. MOLECULAR PLANT 2012; 5:318-33. [PMID: 22442388 DOI: 10.1093/mp/sss015] [Citation(s) in RCA: 173] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Isoprenoids are functionally and structurally the most diverse group of plant metabolites reported to date. They can function as primary metabolites, participating in essential plant cellular processes, and as secondary metabolites, of which many have substantial commercial, pharmacological, and agricultural value. Isoprenoid end products participate in plants in a wide range of physiological processes acting in them both synergistically, such as chlorophyll and carotenoids during photosynthesis, or antagonistically, such as gibberellic acid and abscisic acid during seed germination. It is therefore expected that fluxes via isoprenoid metabolic network are tightly controlled both temporally and spatially, and that this control occurs at different levels of regulation and in an orchestrated manner over the entire isoprenoid metabolic network. In this review, we summarize our current knowledge of the topology of the plant isoprenoid pathway network and its regulation at the gene expression level following diverse stimuli. We conclude by discussing agronomical and biotechnological applications emerging from the plant isoprenoid metabolism and provide an outlook on future directions in the systems analysis of the plant isoprenoid pathway network.
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Affiliation(s)
- Eva Vranová
- Department of Biology, Plant Biotechnology, ETH Zurich, Universitätstrasse 2, 8092 Zurich, Switzerland
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Hemmerlin A, Harwood JL, Bach TJ. A raison d'être for two distinct pathways in the early steps of plant isoprenoid biosynthesis? Prog Lipid Res 2011; 51:95-148. [PMID: 22197147 DOI: 10.1016/j.plipres.2011.12.001] [Citation(s) in RCA: 208] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2011] [Revised: 11/28/2011] [Accepted: 12/05/2011] [Indexed: 12/12/2022]
Abstract
When compared to other organisms, plants are atypical with respect to isoprenoid biosynthesis: they utilize two distinct and separately compartmentalized pathways to build up isoprene units. The co-existence of these pathways in the cytosol and in plastids might permit the synthesis of many vital compounds, being essential for a sessile organism. While substrate exchange across membranes has been shown for a variety of plant species, lack of complementation of strong phenotypes, resulting from inactivation of either the cytosolic pathway (growth and development defects) or the plastidial pathway (pigment bleaching), seems to be surprising at first sight. Hundreds of isoprenoids have been analyzed to determine their biosynthetic origins. It can be concluded that in angiosperms, under standard growth conditions, C₂₀-phytyl moieties, C₃₀-triterpenes and C₄₀-carotenoids are made nearly exclusively within compartmentalized pathways, while mixed origins are widespread for other types of isoprenoid-derived molecules. It seems likely that this coexistence is essential for the interaction of plants with their environment. A major purpose of this review is to summarize such observations, especially within an ecological and functional context and with some emphasis on regulation. This latter aspect still requires more work and present conclusions are preliminary, although some general features seem to exist.
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Affiliation(s)
- Andréa Hemmerlin
- Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, IBMP-CNRS-UPR2357, Université de Strasbourg, 28 Rue Goethe, F-67083 Strasbourg Cedex, France.
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Vickers CE, Possell M, Laothawornkitkul J, Ryan AC, Hewitt CN, Mullineaux PM. Isoprene synthesis in plants: lessons from a transgenic tobacco model. PLANT, CELL & ENVIRONMENT 2011; 34:1043-1053. [PMID: 21388420 DOI: 10.1111/j.1365-3040.2011.02303.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Isoprene is a highly reactive gas, and is emitted in such large quantities from the biosphere that it substantially affects the oxidizing potential of the atmosphere. Relatively little is known about the control of isoprene emission at the molecular level. Using transgenic tobacco lines harbouring a poplar isoprene synthase gene, we examined control of isoprene emission. Isoprene synthase required chloroplastic localization for catalytic activity, and isoprene was produced via the methyl erythritol (MEP) pathway from recently assimilated carbon. Emission patterns in transgenic tobacco plants were remarkably similar to naturally emitting plants under a wide variety of conditions. Emissions correlated with photosynthetic rates in developing and mature leaves, and with the amount of isoprene synthase protein in mature leaves. Isoprene synthase protein levels did not change under short-term increase in heat/light, despite an increase in emissions under these conditions. A robust circadian pattern could be observed in emissions from long-day plants. The data support the idea that substrate supply and changes in enzyme kinetics (rather than changes in isoprene synthase levels or post-translational regulation of activity) are the primary controls on isoprene emission in mature transgenic tobacco leaves.
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Affiliation(s)
- Claudia E Vickers
- Department of Biological Sciences, Essex University, Colchester, Essex C04 3SQLancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, England, UK
| | - Malcolm Possell
- Department of Biological Sciences, Essex University, Colchester, Essex C04 3SQLancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, England, UK
| | - Jullada Laothawornkitkul
- Department of Biological Sciences, Essex University, Colchester, Essex C04 3SQLancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, England, UK
| | - Annette C Ryan
- Department of Biological Sciences, Essex University, Colchester, Essex C04 3SQLancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, England, UK
| | - C Nicholas Hewitt
- Department of Biological Sciences, Essex University, Colchester, Essex C04 3SQLancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, England, UK
| | - Philip M Mullineaux
- Department of Biological Sciences, Essex University, Colchester, Essex C04 3SQLancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, England, UK
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Rasulov B, Hüve K, Laisk A, Niinemets Ü. Induction of a longer term component of isoprene release in darkened aspen leaves: origin and regulation under different environmental conditions. PLANT PHYSIOLOGY 2011; 156:816-31. [PMID: 21502186 PMCID: PMC3177278 DOI: 10.1104/pp.111.176222] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2011] [Accepted: 04/12/2011] [Indexed: 05/19/2023]
Abstract
After darkening, isoprene emission continues for 20 to 30 min following biphasic kinetics. The initial dark release of isoprene (postillumination emission), for 200 to 300 s, occurs mainly at the expense of its immediate substrate, dimethylallyldiphosphate (DMADP), but the origin and controls of the secondary burst of isoprene release (dark-induced emission) between approximately 300 and 1,500 s, are not entirely understood. We used a fast-response gas-exchange system to characterize the controls of dark-induced isoprene emission by light, temperature, and CO(2) and oxygen concentrations preceding leaf darkening and the effects of short light pulses and changing gas concentrations during dark-induced isoprene release in hybrid aspen (Populus tremula × Populus tremuloides). The effect of the 2-C-methyl-D-erythritol-4-phosphate pathway inhibitor fosmidomycin was also investigated. The integral of postillumination isoprene release was considered to constitute the DMADP pool size, while the integral of dark-induced emission was defined as the "dark" pool. Overall, the steady-state emission rate in light and the maximum dark-induced emission rate responded similarly to variations in preceding environmental drivers and atmospheric composition, increasing with increasing light, having maxima at approximately 40 °C and close to the CO(2) compensation point, and were suppressed by lack of oxygen. The DMADP and dark pool sizes were also similar through their environmental dependencies, except for high temperatures, where the dark pool significantly exceeded the DMADP pool. Isoprene release could be enhanced by short lightflecks early during dark-induced isoprene release, but not at later stages. Fosmidomycin strongly suppressed both the isoprene emission rates in light and in the dark, but the dark pool was only moderately affected. These results demonstrate a strong correspondence between the steady-state isoprene emission in light and the dark-induced emission and suggest that the dark pool reflects the total pool size of 2-C-methyl-d-erythritol-4-phosphate pathway metabolites upstream of DMADP. These metabolites are converted to isoprene as soon as ATP and NADPH become available, likely by dark activation of chloroplastic glycolysis and chlororespiration.
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Côté CL, Boileau F, Roy V, Ouellet M, Levasseur C, Morency MJ, Cooke JEK, Séguin A, MacKay JJ. Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees. BMC PLANT BIOLOGY 2010; 10:273. [PMID: 21143995 PMCID: PMC3017839 DOI: 10.1186/1471-2229-10-273] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2010] [Accepted: 12/11/2010] [Indexed: 05/03/2023]
Abstract
BACKGROUND Class III Homeodomain Leucine Zipper (HD-Zip III) proteins have been implicated in the regulation of cambium identity, as well as primary and secondary vascular differentiation and patterning in herbaceous plants. They have been proposed to regulate wood formation but relatively little evidence is available to validate such a role. We characterised and compared HD-Zip III gene family in an angiosperm tree, Populus spp. (poplar), and the gymnosperm Picea glauca (white spruce), representing two highly evolutionarily divergent groups. RESULTS Full-length cDNA sequences were isolated from poplar and white spruce. Phylogenetic reconstruction indicated that some of the gymnosperm sequences were derived from lineages that diverged earlier than angiosperm sequences, and seem to have been lost in angiosperm lineages. Transcript accumulation profiles were assessed by RT-qPCR on tissue panels from both species and in poplar trees in response to an inhibitor of polar auxin transport. The overall transcript profiles HD-Zip III complexes in white spruce and poplar exhibited substantial differences, reflecting their evolutionary history. Furthermore, two poplar sequences homologous to HD-Zip III genes involved in xylem development in Arabidopsis and Zinnia were over-expressed in poplar plants. PtaHB1 over-expression produced noticeable effects on petiole and primary shoot fibre development, suggesting that PtaHB1 is involved in primary xylem development. We also obtained evidence indicating that expression of PtaHB1 affected the transcriptome by altering the accumulation of 48 distinct transcripts, many of which are predicted to be involved in growth and cell wall synthesis. Most of them were down-regulated, as was the case for several of the poplar HD-Zip III sequences. No visible physiological effect of over-expression was observed on PtaHB7 transgenic trees, suggesting that PtaHB1 and PtaHB7 likely have distinct roles in tree development, which is in agreement with the functions that have been assigned to close homologs in herbaceous plants. CONCLUSIONS This study provides an overview of HD-zip III genes related to woody plant development and identifies sequences putatively involved in secondary vascular growth in angiosperms and in gymnosperms. These gene sequences are candidate regulators of wood formation and could be a source of molecular markers for tree breeding related to wood properties.
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Affiliation(s)
- Caroline L Côté
- Département des Sciences du Bois et de la Forêt, Université Laval, 2405 rue de la Terrasse, Québec, QC G1V0A6, Canada
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Rasulov B, Hüve K, Bichele I, Laisk A, Niinemets Ü. Temperature response of isoprene emission in vivo reflects a combined effect of substrate limitations and isoprene synthase activity: a kinetic analysis. PLANT PHYSIOLOGY 2010; 154:1558-70. [PMID: 20837700 PMCID: PMC2971629 DOI: 10.1104/pp.110.162081] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2010] [Accepted: 09/12/2010] [Indexed: 05/20/2023]
Abstract
The responses of isoprene emission rate to temperature are characterized by complex time-dependent behaviors that are currently not entirely understood. To gain insight into the temperature dependencies of isoprene emission, we studied steady-state and transient responses of isoprene emission from hybrid aspen (Populus tremula × Populus tremuloides) leaves using a fast-response gas-exchange system coupled to a proton-transfer reaction mass spectrometer. A method based on postillumination isoprene release after rapid temperature transients was developed to determine the rate constant of isoprene synthase (IspS), the pool size of its substrate dimethylallyldiphosphate (DMADP), and to separate the component processes of the temperature dependence of isoprene emission. Temperature transients indicated that over the temperature range 25°C to 45°C, IspS was thermally stable and operated in the linear range of its substrate DMADP concentration. The in vivo rate constant of IspS obeyed the Arrhenius law, with an activation energy of 42.8 kJ mol(-1). In contrast, steady-state isoprene emission had a significantly lower temperature optimum than IspS and higher activation energy. The reversible temperature-dependent decrease in the rate of isoprene emission between 35°C and 44°C was caused by decreases in DMADP concentration, possibly reflecting reduced pools of energetic metabolites generated in photosynthesis, particularly of ATP. Strong control of isoprene temperature responses by the DMADP pool implies that transient temperature responses under fluctuating conditions in the field are driven by initial DMADP pool size as well as temperature-dependent modifications in DMADP pool size during temperature transients. These results have important implications for the development of process-based models of isoprene emission.
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48
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Affiliation(s)
- Robert S Blake
- Department of Chemistry, University of Leicester, University Road, Leicester LE1 7RH, United Kingdom
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49
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Behnke K, Kaiser A, Zimmer I, Brüggemann N, Janz D, Polle A, Hampp R, Hänsch R, Popko J, Schmitt-Kopplin P, Ehlting B, Rennenberg H, Barta C, Loreto F, Schnitzler JP. RNAi-mediated suppression of isoprene emission in poplar transiently impacts phenolic metabolism under high temperature and high light intensities: a transcriptomic and metabolomic analysis. PLANT MOLECULAR BIOLOGY 2010; 74:61-75. [PMID: 20526857 PMCID: PMC3128716 DOI: 10.1007/s11103-010-9654-z] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2009] [Accepted: 05/21/2010] [Indexed: 05/04/2023]
Abstract
In plants, isoprene plays a dual role: (a) as thermo-protective agent proposed to prevent degradation of enzymes/membrane structures involved in photosynthesis, and (b) as reactive molecule reducing abiotic oxidative stress. The present work addresses the question whether suppression of isoprene emission interferes with genome wide transcription rates and metabolite fluxes in grey poplar (Populus x canescens) throughout the growing season. Gene expression and metabolite profiles of isoprene emitting wild type plants and RNAi-mediated non-isoprene emitting poplars were compared by using poplar Affymetrix microarrays and non-targeted FT-ICR-MS (Fourier transform ion cyclotron resonance mass spectrometry). We observed a transcriptional down-regulation of genes encoding enzymes of phenylpropanoid regulatory and biosynthetic pathways, as well as distinct metabolic down-regulation of condensed tannins and anthocyanins, in non-isoprene emitting genotypes during July, when high temperature and light intensities possibly caused transient drought stress, as indicated by stomatal closure. Under these conditions leaves of non-isoprene emitting plants accumulated hydrogen peroxide (H(2)O(2)), a signaling molecule in stress response and negative regulator of anthocyanin biosynthesis. The absence of isoprene emission under high temperature and light stress resulted transiently in a new chemo(pheno)type with suppressed production of phenolic compounds. This may compromise inducible defenses and may render non-isoprene emitting poplars more susceptible to environmental stress.
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Affiliation(s)
- Katja Behnke
- Institute for Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstr. 19, 82467 Garmisch-Partenkirchen, Germany
| | - Andreas Kaiser
- Institute for Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstr. 19, 82467 Garmisch-Partenkirchen, Germany
| | - Ina Zimmer
- Institute for Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstr. 19, 82467 Garmisch-Partenkirchen, Germany
| | - Nicolas Brüggemann
- Institute for Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstr. 19, 82467 Garmisch-Partenkirchen, Germany
| | - Dennis Janz
- Forest Botany and Tree Physiology, Büsgen-Institute, Georg-August-University Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, Büsgen-Institute, Georg-August-University Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
| | - Rüdiger Hampp
- Physiological Ecology of Plants, Botanical Institute, Eberhard-Karls-University Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany
| | - Robert Hänsch
- Institute for Plant Biology, Technical University of Braunschweig, Humboldtstrasse 1, 38206 Braunschweig, Germany
| | - Jennifer Popko
- Institute for Plant Biology, Technical University of Braunschweig, Humboldtstrasse 1, 38206 Braunschweig, Germany
| | - Philippe Schmitt-Kopplin
- Institute for Ecological Chemistry, Helmholtz Center Munich, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
| | - Barbara Ehlting
- Institute for Forest Botany and Tree Physiology, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 053/054, 79110 Freiburg, Germany
- Department of Biology, University of Victoria, 3800 Finnerty Rd, Victoria, BC V8P 5C2 Canada
| | - Heinz Rennenberg
- Institute for Forest Botany and Tree Physiology, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 053/054, 79110 Freiburg, Germany
| | - Csengele Barta
- Istituto di Biologia Agroambientale e Forestale (IBAF)—Consiglio Nazionale delle Ricerche (CNR), Via Salaria Km. 29,300, 00015, Monterotondo, Roma, Italy
| | - Francesco Loreto
- Istituto per la Protezione delle Piante (IPP), Consiglio Nazionale delle Ricerche (CNR), Area della Ricerca del CNR di Firenze, Via Madonna del Piano 10, 50019 Sesto Fiorentino Firenze, Italy
| | - Jörg-Peter Schnitzler
- Institute for Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstr. 19, 82467 Garmisch-Partenkirchen, Germany
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Vickers CE, Possell M, Nicholas Hewitt C, Mullineaux PM. Genetic structure and regulation of isoprene synthase in Poplar (Populus spp.). PLANT MOLECULAR BIOLOGY 2010; 73:547-558. [PMID: 20467886 DOI: 10.1007/s11103-010-9642-3] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2010] [Accepted: 04/26/2010] [Indexed: 05/29/2023]
Abstract
Isoprene is a volatile 5-carbon hydrocarbon derived from the chloroplastic methylerythritol 2-C-methyl-D: -erythritol 4-phosphate isoprenoid pathway. In plants, isoprene emission is controlled by the enzyme isoprene synthase; however, there is still relatively little known about the genetics and regulation of this enzyme. Isoprene synthase gene structure was analysed in three poplar species. It was found that genes encoding stromal isoprene synthase exist as a small gene family, the members of which encode virtually identical proteins and are differentially regulated. Accumulation of isoprene synthase protein is developmentally regulated, but does not differ between sun and shade leaves and does not increase when heat stress is applied. Our data suggest that, in mature leaves, isoprene emission rates are primarily determined by substrate (dimethylallyl diphosphate, DMADP) availability. In immature leaves, where isoprene synthase levels are variable, emission levels are also influenced by the amount of isoprene synthase protein. No thylakoid isoforms could be identified in Populus alba or in Salix babylonica. Together, these data show that control of isoprene emission at the genetic level is far more complicated than previously assumed.
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Affiliation(s)
- Claudia E Vickers
- Department of Biological Sciences, Essex University, Colchester C043SQ, UK.
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