Feedback regulation of microscopes by image processing

High-Speed and Low-Latency 3D Fluorescence Imaging for Robotic Microscope

In this study, we propose a high-speed and low-latency 3D fluorescence imaging method for robotic microscopes. The prototype system consists of a focus-tunable lens called a TAG lens, which operates at several hundred kHz, an image intensifier (I.I.) that enhances faint light such as fluorescence, and a high-speed vision system that can transfer acquired images to the host PC in 500 Hz. The proposed method can acquire images at arbitrary focal lengths at frame rates on the order of 1 kHz by synchronizing the focal-length fluctuation of the TAG lens and the exposure timing of the I.I., whose duration is a few hundred nanoseconds. The low-latency we aim for in this paper is on the order of a few milliseconds. A prototype system was developed to validate the proposed method. High-speed 3D tracking of the Brownian motion of a fluorescent bead of 0.5 μm diameter was demonstrated to verify the feedback performance of the proposed low-latency 3D fluorescence imaging method.

Imaging ER-to-Golgi transport: towards a systems view

Proteins synthesised at the endoplasmic reticulum (ER) have to undergo a number of consecutive and coordinated steps to reach the Golgi complex. To understand the dynamic complexity of ER-to-Golgi transport at the structural and molecular level, light microscopy approaches are fundamental tools that allow in vivo observations of protein dynamics and interactions of fluorescent proteins in living cells. Imaging protein and organelle dynamics close to the ultra-structural level became possible by combining light microscopy with electron microscopy analyses or super-resolution light microscopy methods. Besides, increasing evidence suggests that the early secretory pathway is tightly connected to other cellular processes, such as signal transduction, and quantitative information at the systems level is fundamental to achieve a comprehensive molecular understanding of these connections. High-throughput microscopy in fixed and living cells in combination with systematic perturbation of gene expression by, e.g. RNA interference, will open new avenues to gain such an understanding of the early secretory pathway at the systems level. In this Commentary, we first outline examples that revealed the dynamic organisation of ER-to-Golgi transport in living cells. Next, we discuss the use of advanced imaging methods in studying ER-to-Golgi transport and, finally, delineate the efforts in understanding ER-to-Golgi transport at the systems level.

Adaptive fluorescence microscopy by online feedback image analysis

Obtaining sufficient statistics in quantitative fluorescence microscopy is often hampered by the tedious and time-consuming task of manually locating comparable specimen and repeatedly launching the same acquisition protocol. Recent advances in combining fluorescence microscopy with online image analysis tackle this problem by fully integrating the task of identifying and locating the specimen of interest in an automated acquisition workflow. Here, we describe the general requirements and specific microscope control and image analysis software solutions for implementing such automated online feedback microscopy. We demonstrate the power of the method by two selected applications addressing high-throughput 3D imaging of sparsely parasite-infected tissue culture cells and automated fluorescence recovery after photobleaching experiments to quantify the turnover of vesicular coat proteins at ER exit sites.