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Lehnertz K. Ordinal methods for a characterization of evolving functional brain networks. CHAOS (WOODBURY, N.Y.) 2023; 33:022101. [PMID: 36859225 DOI: 10.1063/5.0136181] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 01/06/2023] [Indexed: 06/18/2023]
Abstract
Ordinal time series analysis is based on the idea to map time series to ordinal patterns, i.e., order relations between the values of a time series and not the values themselves, as introduced in 2002 by C. Bandt and B. Pompe. Despite a resulting loss of information, this approach captures meaningful information about the temporal structure of the underlying system dynamics as well as about properties of interactions between coupled systems. This-together with its conceptual simplicity and robustness against measurement noise-makes ordinal time series analysis well suited to improve characterization of the still poorly understood spatiotemporal dynamics of the human brain. This minireview briefly summarizes the state-of-the-art of uni- and bivariate ordinal time-series-analysis techniques together with applications in the neurosciences. It will highlight current limitations to stimulate further developments, which would be necessary to advance characterization of evolving functional brain networks.
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Affiliation(s)
- Klaus Lehnertz
- Department of Epileptology, University of Bonn Medical Centre, Venusberg Campus 1, 53127 Bonn, Germany; Helmholtz Institute for Radiation and Nuclear Physics, University of Bonn, Nussallee 14-16, 53115 Bonn, Germany; and Interdisciplinary Center for Complex Systems, University of Bonn, Brühler Straße 7, 53175 Bonn, Germany
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Johnston R, Snyder AC, Schibler RS, Smith MA. EEG Signals Index a Global Signature of Arousal Embedded in Neuronal Population Recordings. eNeuro 2022; 9:ENEURO.0012-22.2022. [PMID: 35606150 PMCID: PMC9186107 DOI: 10.1523/eneuro.0012-22.2022] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Revised: 05/04/2022] [Accepted: 05/05/2022] [Indexed: 01/01/2023] Open
Abstract
Electroencephalography (EEG) has long been used to index brain states, from early studies describing activity in the presence and absence of visual stimulation to modern work employing complex perceptual tasks. These studies have shed light on brain-wide signals but often lack explanatory power at the single neuron level. Similarly, single neuron recordings can suffer from an inability to measure brain-wide signals accessible using EEG. Here, we combined these techniques while monkeys performed a change detection task and discovered a novel link between spontaneous EEG activity and a neural signal embedded in the spiking responses of neuronal populations. This "slow drift" was associated with fluctuations in the subjects' arousal levels over time: decreases in prestimulus α power were accompanied by increases in pupil size and decreases in microsaccade rate. These results show that brain-wide EEG signals can be used to index modes of activity present in single neuron recordings, that in turn reflect global changes in brain state that influence perception and behavior.
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Affiliation(s)
- Richard Johnston
- Department of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, PA 15213
- Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213
- Center for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, PA 15213
| | - Adam C Snyder
- Department of Brain and Cognitive Sciences, University of Rochester, Rochester, PA 14627
- Department of Neuroscience, University of Rochester, Rochester, NY 14642
- Center for Visual Science, University of Rochester, Rochester, NY 14627
| | | | - Matthew A Smith
- Department of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, PA 15213
- Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213
- Center for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, PA 15213
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Choi KE, Anh VTQ, Oh JH, Yun C, Kim SW. Normative Data of Axial Length, Retinal Thickness Measurements, Visual Evoked Potentials, and Full-Field Electroretinography in Female, Wild-Type Minipigs. Transl Vis Sci Technol 2021; 10:3. [PMID: 34605876 PMCID: PMC8496425 DOI: 10.1167/tvst.10.12.3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Purpose The purpose of this study was to present normative data of optical coherence tomography (OCT), electrophysiological, and ocular biometry parameters and their correlation in minipigs. Methods Eighty-eight eyes of 44 minipigs underwent full-field electroretinogram (ERG) recording and ocular biometry. However, 10 eyes of 6 minipigs were excluded because of poor OCT image quality. The thickness of the retinal sublayers was measured on a vertical line at 5 locations with a 1 mm interval from the disc margin to the dorsal periphery and at 10 locations on the visual streak. Visual evoked potentials (VEPs) were measured in 15 eyes of 8 minipigs. Results All minipigs were female with a mean age and axial length of 13.83 ± 10.56 months and 20.33 ± 0.88 mm, respectively. The implicit time of the a-wave and b-wave in scotopic 3.0 ERGs was longer than that in photopic 3.0 ERG. The implicit time of the n2-wave and p2-wave in VEP was 25.67 ± 7.41 ms and 52.96 ± 10.38 ms, respectively. The total retinal layer (TRL) and nerve fiber layer (NFL) became thinner near the periphery. The inner retinal sublayers near the visual streak were thicker than those at other locations. Central TRL and NFL thickness on visual streak was 223.06 ± 23.19 µm and 74.03 ± 13.93 µm, respectively. The temporal TRL and NFL on the visual streak were thicker than those on the nasal side. Conclusions The normative electrophysiological and OCT parameters used in our study can be used as reference data in further pig studies. Translational Relevance This study presents normative data of minipigs, which are adequate animal models for preclinical studies.
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Affiliation(s)
- Kwang-Eon Choi
- Department of Ophthalmology, Korea University College of Medicine, Seoul, Korea
| | - Vu Thi Que Anh
- Department of Ophthalmology, Hanoi Medical University, Hanoi, Vietnam
| | - Jong-Hyun Oh
- Department of Ophthalmology, Dongguk University Ilsan Hospital, Goyang, Korea
| | - Cheolmin Yun
- Department of Ophthalmology, Korea University College of Medicine, Seoul, Korea
| | - Seong-Woo Kim
- Department of Ophthalmology, Korea University College of Medicine, Seoul, Korea
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Characteristic changes in EEG spectral powers of patients with opioid-use disorder as compared with those with methamphetamine- and alcohol-use disorders. PLoS One 2021; 16:e0248794. [PMID: 34506492 PMCID: PMC8432824 DOI: 10.1371/journal.pone.0248794] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Accepted: 08/26/2021] [Indexed: 11/30/2022] Open
Abstract
Electroencephalography (EEG) likely reflects activity of cortical neurocircuits, making it an insightful estimation for mental health in patients with substance use disorder (SUD). EEG signals are recorded as sinusoidal waves, containing spectral amplitudes across several frequency bands with high spatio-temporal resolution. Prior work on EEG signal analysis has been made mainly at individual electrodes. These signals can be evaluated from advanced aspects, including sub-regional and hemispheric analyses. Due to limitation of computational techniques, few studies in earlier work could conduct data analyses from these aspects. Therefore, EEG in patients with SUD is not fully understood. In the present retrospective study, spectral powers from a data house containing opioid (OUD), methamphetamine/stimulants (MUD), and alcohol use disorder (AUD) were extracted, and then converted into five distinct topographic data (i.e., electrode-based, cortical subregion-based, left-right hemispheric, anterior-posterior based, and total cortex-based analyses). We found that data conversion and reorganization in the topographic way had an impact on EEG spectral powers in patients with OUD significantly different from those with MUD or AUD. Differential changes were observed from multiple perspectives, including individual electrodes, subregions, hemispheres, anterior-posterior cortices, and across the cortex as a whole. Understanding the differential changes in EEG signals may be useful for future work with machine learning and artificial intelligence (AI), not only for diagnostic but also for prognostic purposes in patients with SUD.
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Prakash SS, Das A, Kanth ST, Mayo JP, Ray S. Decoding of Attentional State Using High-Frequency Local Field Potential Is As Accurate As Using Spikes. Cereb Cortex 2021; 31:4314-4328. [PMID: 33866366 DOI: 10.1093/cercor/bhab088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 02/25/2021] [Accepted: 03/18/2021] [Indexed: 11/14/2022] Open
Abstract
Local field potentials (LFPs) in visual cortex are reliably modulated when the subject's focus of attention is cued into versus out of the receptive field of the recorded sites, similar to modulation of spikes. However, human psychophysics studies have used an additional attention condition, neutral cueing, for decades. The effect of neutral cueing on spikes was examined recently and found to be intermediate between cued and uncued conditions. However, whether LFPs are also precise enough to represent graded states of attention is unknown. We found in rhesus monkeys that LFPs during neutral cueing were also intermediate between cued and uncued conditions. For a single electrode, attention was more discriminable using high frequency (>30 Hz) LFP power than spikes, which is expected because LFP represents a population signal and therefore is expected to be less noisy than spikes. However, previous studies have shown that when multiple electrodes are used, spikes can outperform LFPs. Surprisingly, in our study, spikes did not outperform LFPs when discriminability was computed using multiple electrodes, even though the LFP activity was highly correlated across electrodes compared with spikes. These results constrain the spatial scale over which attention operates and highlight the usefulness of LFPs in studying attention.
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Affiliation(s)
- Surya S Prakash
- Centre for Neuroscience, Indian Institute of Science, Bangalore 560012, India
| | - Aritra Das
- Centre for Neuroscience, Indian Institute of Science, Bangalore 560012, India
| | - Sidrat Tasawoor Kanth
- Centre for Neuroscience, Indian Institute of Science, Bangalore 560012, India.,IISc Mathematics Initiative, Indian Institute of Science, Bangalore 560012, India
| | - J Patrick Mayo
- Department of Ophthalmology, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Supratim Ray
- Centre for Neuroscience, Indian Institute of Science, Bangalore 560012, India.,IISc Mathematics Initiative, Indian Institute of Science, Bangalore 560012, India
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Fahimi Hnazaee M, Wittevrongel B, Khachatryan E, Libert A, Carrette E, Dauwe I, Meurs A, Boon P, Van Roost D, Van Hulle MM. Localization of deep brain activity with scalp and subdural EEG. Neuroimage 2020; 223:117344. [PMID: 32898677 DOI: 10.1016/j.neuroimage.2020.117344] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Revised: 07/27/2020] [Accepted: 08/31/2020] [Indexed: 01/11/2023] Open
Abstract
To what extent electrocorticography (ECoG) and electroencephalography (scalp EEG) differ in their capability to locate sources of deep brain activity is far from evident. Compared to EEG, the spatial resolution and signal-to-noise ratio of ECoG is superior but its spatial coverage is more restricted, as is arguably the volume of tissue activity effectively measured from. Moreover, scalp EEG studies are providing evidence of locating activity from deep sources such as the hippocampus using high-density setups during quiet wakefulness. To address this question, we recorded a multimodal dataset from 4 patients with refractory epilepsy during quiet wakefulness. This data comprises simultaneous scalp, subdural and depth EEG electrode recordings. The latter was located in the hippocampus or insula and provided us with our "ground truth" for source localization of deep activity. We applied independent component analysis (ICA) for the purpose of separating the independent sources in theta, alpha and beta frequency band activity. In all patients subdural- and scalp EEG components were observed which had a significant zero-lag correlation with one or more contacts of the depth electrodes. Subsequent dipole modeling of the correlating components revealed dipole locations that were significantly closer to the depth electrodes compared to the dipole location of non-correlating components. These findings support the idea that components found in both recording modalities originate from neural activity in close proximity to the depth electrodes. Sources localized with subdural electrodes were ~70% closer to the depth electrode than sources localized with EEG with an absolute improvement of around ~2cm. In our opinion, this is not a considerable improvement in source localization accuracy given that, for clinical purposes, ECoG electrodes were implanted in close proximity to the depth electrodes. Furthermore, the ECoG grid attenuates the scalp EEG, due to the electrically isolating silastic sheets in which the ECoG electrodes are embedded. Our results on dipole modeling show that the deep source localization accuracy of scalp EEG is comparable to that of ECoG. SIGNIFICANCE STATEMENT: Deep and subcortical regions play an important role in brain function. However, as joint recordings at multiple spatial scales to study brain function in humans are still scarce, it is still unresolved to what extent ECoG and EEG differ in their capability to locate sources of deep brain activity. To the best of our knowledge, this is the first study presenting a dataset of simultaneously recorded EEG, ECoG and depth electrodes in the hippocampus or insula, with a focus on non-epileptiform activity (quiet wakefulness). Furthermore, we are the first study to provide experimental findings on the comparison of source localization of deep cortical structures between invasive and non-invasive brain activity measured from the cortical surface.
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Affiliation(s)
| | - Benjamin Wittevrongel
- Laboratory for Neuro- and Psychophysiology, Department of Neurosciences, KU Leuven, Belgium
| | - Elvira Khachatryan
- Laboratory for Neuro- and Psychophysiology, Department of Neurosciences, KU Leuven, Belgium
| | - Arno Libert
- Laboratory for Neuro- and Psychophysiology, Department of Neurosciences, KU Leuven, Belgium
| | - Evelien Carrette
- Faculty of Medicine and Health Sciences, Ghent University Hospital, Ghent, Belgium
| | - Ine Dauwe
- Faculty of Medicine and Health Sciences, Ghent University Hospital, Ghent, Belgium
| | - Alfred Meurs
- Faculty of Medicine and Health Sciences, Ghent University Hospital, Ghent, Belgium
| | - Paul Boon
- Faculty of Medicine and Health Sciences, Ghent University Hospital, Ghent, Belgium
| | - Dirk Van Roost
- Faculty of Medicine and Health Sciences, Ghent University Hospital, Ghent, Belgium
| | - Marc M Van Hulle
- Laboratory for Neuro- and Psychophysiology, Department of Neurosciences, KU Leuven, Belgium
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Sandhaeger F, von Nicolai C, Miller EK, Siegel M. Monkey EEG links neuronal color and motion information across species and scales. eLife 2019; 8:e45645. [PMID: 31287792 PMCID: PMC6615858 DOI: 10.7554/elife.45645] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 06/15/2019] [Indexed: 11/26/2022] Open
Abstract
It remains challenging to relate EEG and MEG to underlying circuit processes and comparable experiments on both spatial scales are rare. To close this gap between invasive and non-invasive electrophysiology we developed and recorded human-comparable EEG in macaque monkeys during visual stimulation with colored dynamic random dot patterns. Furthermore, we performed simultaneous microelectrode recordings from 6 areas of macaque cortex and human MEG. Motion direction and color information were accessible in all signals. Tuning of the non-invasive signals was similar to V4 and IT, but not to dorsal and frontal areas. Thus, MEG and EEG were dominated by early visual and ventral stream sources. Source level analysis revealed corresponding information and latency gradients across cortex. We show how information-based methods and monkey EEG can identify analogous properties of visual processing in signals spanning spatial scales from single units to MEG - a valuable framework for relating human and animal studies.
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Affiliation(s)
- Florian Sandhaeger
- Centre for Integrative NeuroscienceUniversity of TübingenTübingenGermany
- Hertie Institute for Clinical Brain ResearchUniversity of TübingenTübingenGermany
- MEG CenterUniversity of TübingenTübingenGermany
- IMPRS for Cognitive and Systems NeuroscienceUniversity of TübingenTübingenGermany
| | - Constantin von Nicolai
- Centre for Integrative NeuroscienceUniversity of TübingenTübingenGermany
- Hertie Institute for Clinical Brain ResearchUniversity of TübingenTübingenGermany
- MEG CenterUniversity of TübingenTübingenGermany
| | - Earl K Miller
- The Picower Institute for Learning and Memory and Department of Brain and Cognitive SciencesMassachusetts Institute of TechnologyCambridgeUnited States
| | - Markus Siegel
- Centre for Integrative NeuroscienceUniversity of TübingenTübingenGermany
- Hertie Institute for Clinical Brain ResearchUniversity of TübingenTübingenGermany
- MEG CenterUniversity of TübingenTübingenGermany
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Distinct Sources of Variability Affect Eye Movement Preparation. J Neurosci 2019; 39:4511-4526. [PMID: 30914447 PMCID: PMC6554625 DOI: 10.1523/jneurosci.2329-18.2019] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Revised: 02/28/2019] [Accepted: 03/22/2019] [Indexed: 01/01/2023] Open
Abstract
The sequence of events leading to an eye movement to a target begins the moment visual information has reached the brain, well in advance of the eye movement itself. The process by which visual information is encoded and used to generate a motor plan has been the focus of substantial interest partly because of the rapid and reproducible nature of saccadic eye movements, and the key role that they play in primate behavior. Signals related to eye movements are present in much of the primate brain, yet most neurophysiological studies of the transition from vision to eye movements have measured the activity of one neuron at a time. Less is known about how the coordinated action of populations of neurons contribute to the initiation of eye movements. One cortical area of particular interest in this process is the frontal eye fields, a region of prefrontal cortex that has descending projections to oculomotor control centers. We recorded from populations of frontal eye field neurons in macaque monkeys engaged in a memory-guided saccade task. We found a variety of neurons with visually evoked responses, saccade-aligned responses, and mixtures of both. We took advantage of the simultaneous nature of the recordings to measure variability in individual neurons and pairs of neurons from trial-to-trial, as well as the moment-to-moment population activity structure. We found that these measures were related to saccadic reaction times, suggesting that the population-level organization of frontal eye field activity is important for the transition from perception to movement.SIGNIFICANCE STATEMENT The transition from perception to action involves coordination among neurons across the brain. In the case of eye movements, visual and motor signals coexist in individual neurons as well as in neighboring neurons. We used a task designed to compartmentalize the visual and motor aspects of this transition and studied populations of neurons in the frontal eye fields, a key cortical area containing neurons that are implicated in the transition from vision to eye movements. We found that the time required for subjects to produce an eye movement could be predicted from the statistics of the neuronal response of populations of frontal eye field neurons, suggesting that these neurons coordinate their activity to optimize the transition from perception to action.
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Lai M, Demuru M, Hillebrand A, Fraschini M. A comparison between scalp- and source-reconstructed EEG networks. Sci Rep 2018; 8:12269. [PMID: 30115955 PMCID: PMC6095906 DOI: 10.1038/s41598-018-30869-w] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2018] [Accepted: 08/07/2018] [Indexed: 12/14/2022] Open
Abstract
EEG can be used to characterise functional networks using a variety of connectivity (FC) metrics. Unlike EEG source reconstruction, scalp analysis does not allow to make inferences about interacting regions, yet this latter approach has not been abandoned. Although the two approaches use different assumptions, conclusions drawn regarding the topology of the underlying networks should, ideally, not depend on the approach. The aim of the present work was to find an answer to the following questions: does scalp analysis provide a correct estimate of the network topology? how big are the distortions when using various pipelines in different experimental conditions? EEG recordings were analysed with amplitude- and phase-based metrics, founding a strong correlation for the global connectivity between scalp- and source-level. In contrast, network topology was only weakly correlated. The strongest correlations were obtained for MST leaf fraction, but only for FC metrics that limit the effects of volume conduction/signal leakage. These findings suggest that these effects alter the estimated EEG network organization, limiting the interpretation of results of scalp analysis. Finally, this study also suggests that the use of metrics that address the problem of zero lag correlations may give more reliable estimates of the underlying network topology.
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Affiliation(s)
- Margherita Lai
- Department of Electrical and Electronic Engineering, University of Cagliari, Piazza D'armi, Cagliari, I-09123, Italy
| | - Matteo Demuru
- Department of Clinical Neurophysiology and MEG Center, VU University Medical Centre, Amsterdam, The Netherlands
| | - Arjan Hillebrand
- Department of Clinical Neurophysiology and MEG Center, VU University Medical Centre, Amsterdam, The Netherlands
| | - Matteo Fraschini
- Department of Electrical and Electronic Engineering, University of Cagliari, Piazza D'armi, Cagliari, I-09123, Italy.
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