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Burns BM, Gazzola C, Holroyd RG, Crisp J, McGowan MR. Male Reproductive Traits and Their Relationship to Reproductive Traits in Their Female Progeny: A Systematic Review. Reprod Domest Anim 2011; 46:534-53. [DOI: 10.1111/j.1439-0531.2011.01748.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Thomsen H, Reinsch N, Xu N, Looft C, Grupe S, Kühn C, Brockmann GA, Schwerin M, Leyhe-Horn B, Hiendleder S, Erhardt G, Medjugorac I, Russ I, Förster M, Brenig B, Reinhardt F, Reents R, Blümel J, Averdunk G, Kalm E. Mapping of the bovine blood group systems J, N', R', and Z show evidence for oligo-genetic inheritance. Anim Genet 2002; 33:107-17. [PMID: 12047223 DOI: 10.1046/j.1365-2052.2002.00836.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Genes determining the bovine erythrocyte antigens were mapped by linkage analysis. In total 9591 genotypes of 20 grandsire families with 1074 sires from a grand-daughter design were elucidated for the genes determining the erythrocyte antigens EAA, EAB, EAC, EAF, EAJ, EAL, EAM, EAN', EAR', EAS, EAT', and EAZ according to standard paternity testing procedures in the blood typing laboratories. Linkage analyses were performed with 248 microsatellite markers, eight SSCP markers and four polymorphic proteins and enzymes covering the 29 autosomes and the pseudoautosomal region of the sex chromosomes. The number of informative meioses for the blood group systems ranged from 76 to 947. Blood group systems EAM and EAT' were non-informative. Most of the erythrocyte antigen loci showed significant linkage to a single chromosome and were mapped unequivocally. The genes determining erythrocyte antigen EAA, EAB, EAC, EAL, and EAS were mapped to chromosomes 15, 12, 18, 3, and 21, respectively. Lod-score values ranged from 11.43 to 107.83. Moreover, the EAF system could be mapped to chromosome 17. However, the EAN' system previously known as part of the EAF system could be mapped to chromosome 5. In addition, the blood group systems EAJ, the new EAN', EAR', and EAZ, showed significant linkage to microsatellite markers on various chromosomes and also to other blood groups. The appearance of a single blood group system might be therefore either dependent on the existence of other blood group systems or because of an interaction between different loci on various chromosomes as is known in humans and in pigs.
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Affiliation(s)
- H Thomsen
- Institut für Tierzucht und Tierhaltung der Christian-Albrechts-Universität, Kiel, Germany.
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Kappes SM, Hines HC, Penedo MC, Keele JW. Linkage assignment of the last unmapped cattle erythrocyte antigen system, EAF. Anim Genet 1999; 30:396. [PMID: 10582299 DOI: 10.1046/j.1365-2052.1999.00526-16.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Beever JE, Lewin HA, Barendse W, Andersson L, Armitage SM, Beattie CW, Burns BM, Davis SK, Kappes SM, Kirkpatrick BW, Ma RZ, McGraw RA, Stone RT, Taylor JF. Report of the first workshop on the genetic map of bovine chromosome 23. Anim Genet 1996; 27:69-75. [PMID: 8856895 DOI: 10.1111/j.1365-2052.1996.tb00470.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
A report of the first workshop on the genetic map of bovine chromosome 23 (BTA23) is given. Five laboratories contributed data from 29 loci, including a total 11586 informative genotypes. The combined pedigrees represented 1930 potentially informative meioses. Eighteen of the 29 loci were common to two or more data sets and were used to construct a framework linkage map of BTA23. Twelve of the 18 could be ordered on the linkage map with a likelihood ratio of greater than 1000:1. Thus, a low resolution consensus map was constructed with a high level of support for order. The sex-averaged, female and male maps span 54.5, 52.7 and 55.8 cM, respectively. Sex-specific differences in recombination frequency were identified for eight pairs of framework loci. Average genetic distance between framework loci on the sex-averaged map is 5.0 cM.
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Affiliation(s)
- J E Beever
- University of Illinois, Department of Animal Science, Urbana, IL 61801, USA
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Smith TP, Rohrer GA, Alexander LJ, Troyer DL, Kirby-Dobbels KR, Janzen MA, Cornwell DL, Louis CF, Schook LB, Beattie CW. Directed integration of the physical and genetic linkage maps of swine chromosome 7 reveals that the SLA spans the centromere. Genome Res 1995; 5:259-71. [PMID: 8593613 DOI: 10.1101/gr.5.3.259] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The first integrated physical and genetic linkage map encompassing the entire swine chromosome 7 (SSC7) reveals that the porcine MHC (SLA) spans the centromere. A SLA class II antigen gene lies on the q arm, whereas class I and III genes lie on the p arm, suggesting that the presence of a centromere within the SLA does not preclude a functional complex. The SLA appears smaller than other mammalian MHC, as the genetic distance across two class I, three class II, and three class III SLA gene markers is only 1.1 cM. There are significant variations in recombination rates as a function of position along the chromosome, and the SLA lies in the region with the lowest rate. Furthermore, the directed integration approach used in this study was more efficient than previous efforts that emphasized the screening of large insert libraries for random microsatellites.
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Affiliation(s)
- T P Smith
- U.S. Department of Agriculture (USDA), Roman L. Hruska U.S. Meat Animal Research Center (MARC), Clay Center, Nebraska 68933, USA.
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van Eijk MJ, Beever JE, Da Y, Stewart JA, Nicholaides GE, Green CA, Lewin HA. Genetic mapping of BoLA-A, CYP21, DRB3, DYA, and PRL on BTA23. Mamm Genome 1995; 6:151-2. [PMID: 7767004 DOI: 10.1007/bf00303266] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- M J van Eijk
- Department of Animal Sciences, University of Illinois at Urbana-Champaign, USA
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Shalhevet D, Da Y, Beever JE, van Eijk MJ, Ma R, Lewin HA, Gaskins HR. Genetic mapping of the LMP2 proteasome subunit gene to the BoLA class IIb region. Immunogenetics 1995; 41:44-6. [PMID: 7806274 DOI: 10.1007/bf00188432] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- D Shalhevet
- Department of Animal Sciences, University of Illinois at Urbana-Champaign 61801
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Gwakisa P, Mikko S, Andersson L. Close genetic linkage between DRBP1 and CYP21 in the MHC of cattle. Mamm Genome 1994; 5:731-4. [PMID: 7873886 DOI: 10.1007/bf00426083] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- P Gwakisa
- Swedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, Uppsala
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Lewin HA, Beever JE, Da Y, Hines HC, Faulkner DB. The bovine B and C blood group systems are not likely to be the orthologues of human RH: an interesting twist in the comparative map. Anim Genet 1994; 25 Suppl 1:13-8. [PMID: 7943979 DOI: 10.1111/j.1365-2052.1994.tb00398.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
We tested the hypothesis that either the bovine B or C blood group system is the orthologue of human RH. A comparative linkage mapping strategy was applied, using blood typing and restriction fragment length polymorphism (RFLP) analysis of four loci linked to RH on HSA1; PGD, FGR, ALPL and FUCA1. Four sires with a total of 255 half-sib offspring were used for the linkage analysis. Strong support for linkage between ALPL, FUCA1 and FGR was obtained for all sire families (lod scores > 11 for all pairwise comparisons). This new linkage group was assigned to bovine synteny group U17 based on previous somatic cell mapping of the FGR locus. The most favoured order is ALPL-FUCA1-FGR (2.18:1), with ALPL and FGR 5.4 CM and 6.3 CM, respectively, from FUCA1. The B and C blood group systems and PGD were genetically independent of each other and all other markers, indicating that neither B nor C is likely to be the bovine orthologue of human RH. However, given available comparative mapping data, there is some chance that the bovine orthologue of RH is on bovine synteny group U6. Although gene order appears to be conserved with humans, the differences in recombination rates between these three loci in cattle, humans and mice strongly suggest that it is not possible to use human map distances to predict map distances in cattle, making it imperative that bovine gene mappers continue to emphasize adding type I markers to the bovine linkage map.
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Affiliation(s)
- H A Lewin
- Department of Animal Sciences, University of Illinois, Urbana 61801
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Kappes SM, Bishop MD, Keele JW, Penedo MC, Hines HC, Grosz MD, Hawkins GA, Stone RT, Sunden SL, Beattie CW. Linkage of bovine erythrocyte antigen loci B, C, L, S, Z, R' and T' and the serum protein loci post-transferrin 2 (PTF 2), vitamin D binding protein (GC) and albumin (ALB) to DNA microsatellite markers. Anim Genet 1994; 25:133-40. [PMID: 7943946 DOI: 10.1111/j.1365-2052.1994.tb00101.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Seven bovine erythrocyte antigen loci and three serum protein loci were tentatively assigned to chromosomes or synteny groups by linkage analysis to previously assigned microsatellite DNA markers. The erythrocyte antigen locus EAB was mapped to synteny group U27; EAC to chromosome 18, synteny group U9; EAL to chromosome 3, synteny group U6; EAS to chromosome 21, synteny group U4; EAZ to chromosome 10, synteny group U5; EAR' to chromosome 16, synteny group U1; and EAT' to chromosome 19, synteny group U21. The vitamin D binding protein (GC) and albumin (ALB) loci were assigned to chromosome 6, synteny group U15 and post-transferrin 2 (PTF 2) to chromosome 19, synteny group U21.
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Affiliation(s)
- S M Kappes
- USDA, ARS, Roman L. Hruska US Meat Animal Research Center, Clay Center, NE 68933-0166
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Abstract
The bovine genome map has developed rapidly in recent years. The synteny and chromosomal maps are sufficiently developed to identify chromosomal conservation with other mammals, which is especially useful for the extrapolation of data to cattle from the better developed maps of mouse and human. The rapid development of microsatellite and other hypervariable markers in several laboratories around the world and the availability of a common set of reference families for linkage analysis will produce a 20-cM map in 2 yr. Immediate needs for development are 1) markers to anchor physical maps to linkage maps, 2) resource families segregating economic trait loci, and 3) chromosome-specific libraries to develop densely saturated linkage maps over genomic regions shown to contain economic trait loci.
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Affiliation(s)
- J E Womack
- Department of Veterinary Pathobiology, Texas A&M University, College Station 77843
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van Eijk MJ, Russ I, Lewin HA. Order of bovine DRB3, DYA, and PRL determined by sperm typing. Mamm Genome 1993; 4:113-8. [PMID: 8431635 DOI: 10.1007/bf00290436] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
The order and recombination fractions (theta) between the bovine major histocompatibility complex DRB3, DYA, and prolactin (PRL) genes were determined by typing of 254 sperm from a triply heterozygous bull. A recently developed method, primer extension preamplification (PEP), was used to amplify the bovine sperm genome prior to amplification of specific loci by the polymerase chain reaction (PCR). At least 28 copies of the DRB3, PRL, or DYA gene were obtained from 50 cycles of PEP. For sperm typing, alleles of each locus were discriminated by restriction endonuclease cleavage of PCR products and polyacrylamide gel electrophoresis of the restriction fragments. The most likely gene order is PRL-DRB3-DYA, with theta = 0.025 (+/- 0.012) and theta = 0.150 (+/- 0.024), respectively. The odds are 128:1 in favor of this order in comparison with the second most likely order DRB3-PRL-DYA. Our results demonstrate the power of sperm typing in concert with PEP for multilocus gene mapping.
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Affiliation(s)
- M J van Eijk
- Department of Animal Sciences, University of Illinois, Urbana 61801
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Affiliation(s)
- R Fries
- Department of Animal Science, Swiss Federal Institute of Technology, Zurich
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Hines HC, Larsen B. Evidence against linkage between two pairs of bovine blood group loci: B-Z and F-S. Anim Genet 1990; 21:431-2. [PMID: 2090015 DOI: 10.1111/j.1365-2052.1990.tb01989.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- H C Hines
- Department of Dairy Science, Ohio State University, Columbus 43210
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Grosclaude F, François D, Wimitzky M. Evidence for absence of linkage between the B and Z as well as between the F and S systems of cattle blood groups. Anim Genet 1990; 21:427-9. [PMID: 2090014 DOI: 10.1111/j.1365-2052.1990.tb01988.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- F Grosclaude
- Laboratoire de Génétique biochimique, INRA Jouy-en-Josas, France
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