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Häkkinen H, Hodgson D, Early R. Global terrestrial invasions: Where naturalised birds, mammals, and plants might spread next and what affects this process. PLoS Biol 2023; 21:e3002361. [PMID: 37963110 PMCID: PMC10645288 DOI: 10.1371/journal.pbio.3002361] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Accepted: 10/04/2023] [Indexed: 11/16/2023] Open
Abstract
More species live outside their native range than at any point in human history. Yet, there is little understanding of the geographic regions that will be threatened if these species continue to spread, nor of whether they will spread. We predict the world's terrestrial regions to which 833 naturalised plants, birds, and mammals are most imminently likely to spread, and investigate what factors have hastened or slowed their spread to date. There is huge potential for further spread of naturalised birds in North America, mammals in Eastern Europe, and plants in North America, Eastern Europe, and Australia. Introduction history, dispersal, and the spatial distribution of suitable areas are more important predictors of species spread than traits corresponding to habitat usage or biotic interactions. Natural dispersal has driven spread in birds more than in plants. Whether these taxa continue to spread more widely depends partially on connectivity of suitable environments. Plants show the clearest invasion lag, and the putative importance of human transportation indicates opportunities to slow their spread. Despite strong predictive effects, questions remain, particularly why so many birds in North America do not occupy climatically suitable areas close to their existing ranges.
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Affiliation(s)
- Henry Häkkinen
- Centre for Ecology and Conservation, Faculty of Environment, Science and Economy, University of Exeter, Penryn, United Kingdom
| | - Dave Hodgson
- Centre for Ecology and Conservation, Faculty of Environment, Science and Economy, University of Exeter, Penryn, United Kingdom
| | - Regan Early
- Centre for Ecology and Conservation, Faculty of Environment, Science and Economy, University of Exeter, Penryn, United Kingdom
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Martin AE, Lockhart JK, Fahrig L. Are weak dispersers more vulnerable than strong dispersers to land use intensification? Proc Biol Sci 2023; 290:20220909. [PMID: 36629096 PMCID: PMC9832560 DOI: 10.1098/rspb.2022.0909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
Ecologists often state that weak dispersers are particularly at risk from land use intensification, and that they therefore should be prioritized for conservation. We reviewed the empirical evidence, to evaluate whether this idea should be used as a general rule in conservation. While 89% of authors predicted that weak dispersers are more vulnerable to land use intensification (80 out of 90 papers), only 56% of reported tests (235 out of 422) were consistent with this prediction. Thirty per cent of tests (128 out of 422) were consistent with the opposite prediction, that strong dispersers are more vulnerable to intensification, and 60% of articles (45 out of 75) had at least one test where strong dispersers were most vulnerable. The likelihood of finding that weak dispersers are more vulnerable to intensification than strong dispersers varied with latitude, taxonomic group and type of land use intensification. Notably, the odds of finding that weak dispersers are more vulnerable to intensification than strong dispersers was higher if the study was nearer to the equator. Taken together, our results show that the prediction that weak dispersers are more vulnerable than strong dispersers to intensification is not sufficiently supported to justify using weak dispersal as a general indicator of species risk in human-modified landscapes.
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Affiliation(s)
- Amanda E. Martin
- Environment and Climate Change Canada, National Wildlife Research Centre and Department of Biology, Carleton University, Ottawa, Ontario, Canada K1S 5B6
| | - Jessica K. Lockhart
- Geomatics and Landscape Ecology Laboratory, Carleton University, Ottawa, Ontario, Canada K1S 5B6
| | - Lenore Fahrig
- Geomatics and Landscape Ecology Laboratory, Carleton University, Ottawa, Ontario, Canada K1S 5B6
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3
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Suárez‐Castro AF, Maron M, Mitchell MGE, Rhodes JR. Disentangling direct and indirect effects of landscape structure on urban bird richness and functional diversity. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2022; 32:e2713. [PMID: 36196040 PMCID: PMC10077913 DOI: 10.1002/eap.2713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 04/17/2022] [Accepted: 05/31/2022] [Indexed: 06/16/2023]
Abstract
As fragmented landscapes become increasingly common around the world, managing the spatial arrangement of landscape elements (i.e., landscape configuration) may help to promote the conservation of biodiversity. However, the relative effects of landscape configuration on different dimensions of biodiversity across species assemblages are largely unknown. Thus, a key challenge consists in understanding when it is necessary to focus on landscape configuration, in addition to landscape composition, to achieve multifunctional landscapes. We tested the effects of landscape composition (the percentage of tree cover and built infrastructure) and landscape configuration (degree of fragmentation) on landscape-level species richness and different metrics of functional diversity of urban birds. We collected data on different bird guilds (nectarivores/frugivores, insectivores) from Brisbane, Australia. Using structural equation models, we found that landscape structure (landscape composition and configuration) affected functional diversity via two main pathways: (1) through effects of landscape composition, mediated by landscape configuration (indirect effects), and (2) through direct ("independent") effects of landscape composition and configuration, filtering species with extreme trait values. Our results show that landscape-level species richness declined with the extent of built infrastructure, but patterns of trait diversity did not necessarily correlate with this variable. Landscape configuration had a stronger mediating effect on some metrics of the functional diversity of insectivores than on the functional diversity of frugivores/nectarivores. In addition, fragmentation increased the effects of built infrastructure for some traits (body size and dispersal capacity), but not for others (habitat plasticity and foraging behavior). These results suggest that differential approaches to managing landscape structure are needed depending on whether the focus is on protecting functional diversity or species richness and what the target guild is. Managing landscape fragmentation in areas with high levels of built infrastructure is important if the objective is to protect insectivore species with uncommon traits, even if it is not possible to preserve high levels of species richness. However, if the target is to enhance both functional diversity and species richness of multiple guilds, the focus should be on improving composition through the reduction of negative effects of built infrastructure, rather than promoting specific landscape configurations in growing cities.
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Affiliation(s)
- Andrés Felipe Suárez‐Castro
- Centre for Biodiversity and Conservation ScienceThe University of QueenslandBrisbaneAustralia
- Australian Rivers InstituteUniversity of GriffithNathanAustralia
| | - Martine Maron
- Centre for Biodiversity and Conservation ScienceThe University of QueenslandBrisbaneAustralia
- School of Earth and Environmental SciencesThe University of QueenslandBrisbaneAustralia
| | - Matthew G. E. Mitchell
- Institute for Resources, Environment and SustainabilityUniversity of British ColumbiaVancouverBritish ColumbiaCanada
| | - Jonathan R. Rhodes
- Centre for Biodiversity and Conservation ScienceThe University of QueenslandBrisbaneAustralia
- School of Earth and Environmental SciencesThe University of QueenslandBrisbaneAustralia
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Watson F, Becker MS, Smit D, Droge E, Mukula T, Martens S, Mwaba S, Christianson D, Creel S, Brennan A, M'soka J, Gaylard A, Simukonda C, Nyirenda M, Mayani B. Predation strongly limits demography of a keystone migratory herbivore in a recovering transfrontier ecosystem. Ecol Evol 2022; 12:e9414. [PMID: 36262265 PMCID: PMC9575999 DOI: 10.1002/ece3.9414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 08/19/2022] [Accepted: 08/23/2022] [Indexed: 11/20/2022] Open
Abstract
Large herbivore migrations are imperiled globally; however the factors limiting a population across its migratory range are typically poorly understood. Zambia's Greater Liuwa Ecosystem (GLE) contains one of the largest remaining blue wildebeest (Connochaetes taurinus taurinus) migrations, yet the population structure, vital rates, and limiting factors are virtually unknown. We conducted a long-term demographic study of GLE wildebeest from 2012 to 2019 of 107 collared adult females and their calves, 7352 herd observations, 12 aerial population surveys, and concurrent carnivore studies. We applied methods of vital rate estimation and survival analysis within a Bayesian estimation framework. From herd composition observations, we estimated rates of fecundity, first-year survival, and recruitment as 68%, 56%, and 38% respectively, with pronounced interannual variation. Similar rates were estimated from calf-detections with collared cows. Adult survival rates declined steadily from 91% at age 2 years to 61% at age 10 years thereafter dropping more sharply to 2% at age 16 years. Predation, particularly by spotted hyena, was the predominant cause of death for all wildebeest ages and focused on older animals. Starvation only accounted for 0.8% of all unbiased known natural causes of death. Mortality risk differed substantially between wet and dry season ranges, reflecting strong spatio-temporal differences in habitat and predator densities. There was substantial evidence that mortality risk to adults was 27% higher in the wet season, and strong evidence that it was 45% higher in the migratory range where predator density was highest. The estimated vital rates were internally consistent, predicting a stable population trajectory consistent with aerial estimates. From essentially zero knowledge of GLE wildebeest dynamics, this work provides vital rates, age structure, limiting factors, and a plausible mechanism for the migratory tendency, and a robust model-based foundation to evaluate the effects of potential restrictions in migratory range, climate change, predator-prey dynamics, and poaching.
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Affiliation(s)
- Fred Watson
- California State University Monterey BaySeasideCaliforniaUSA
- Zambian Carnivore ProgrammeMfuweZambia
| | - Matthew S. Becker
- Zambian Carnivore ProgrammeMfuweZambia
- Conservation Biology and Ecology Program, Department of EcologyMontana State UniversityBozemanMontanaUSA
| | - Daan Smit
- Zambian Carnivore ProgrammeMfuweZambia
| | - Egil Droge
- Zambian Carnivore ProgrammeMfuweZambia
- Wildlife Conservation Research Unit, The Recanati‐Kaplan Centre, Department of ZoologyUniversity of OxfordOxfordUK
| | - Teddy Mukula
- Zambian Carnivore ProgrammeMfuweZambia
- African Parks Zambia, Liuwa Plain National ParkKalaboZambia
- Worldwide Fund for NatureLusakaZambia
| | | | - Shadrach Mwaba
- Zambian Carnivore ProgrammeMfuweZambia
- Worldwide Fund for NatureLusakaZambia
| | - David Christianson
- Zambian Carnivore ProgrammeMfuweZambia
- Department of Ecosystem Science and ManagementUniversity of WyomingLaramieWyomingUSA
| | - Scott Creel
- Zambian Carnivore ProgrammeMfuweZambia
- Conservation Biology and Ecology Program, Department of EcologyMontana State UniversityBozemanMontanaUSA
- Institutionen för Vilt, Fisk och Miljö, Sveriges LantbruksuniversitetUmeåSweden
| | | | - Jassiel M'soka
- Zambian Carnivore ProgrammeMfuweZambia
- U.S. Agency for International DevelopmentLusakaZambia
| | - Angela Gaylard
- African Parks Zambia, Liuwa Plain National ParkKalaboZambia
| | - Chuma Simukonda
- Zambia Department of National Parks and WildlifeChilangaZambia
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5
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Claramunt S, Hong M, Bravo A. The effect of flight efficiency on gap‐crossing ability in Amazonian forest birds. Biotropica 2022. [DOI: 10.1111/btp.13109] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Santiago Claramunt
- Department of Natural History Royal Ontario Museum Toronto Ontario Canada
- Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario Canada
| | - Milly Hong
- Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario Canada
| | - Adriana Bravo
- Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario Canada
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6
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Mulvaney JM, Matthee CA, Cherry MI. Species-landscape interactions drive divergent population trajectories in four forest-dependent Afromontane forest songbird species within a biodiversity hotspot in South Africa. Evol Appl 2021; 14:2680-2697. [PMID: 34815747 PMCID: PMC8591328 DOI: 10.1111/eva.13306] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 07/19/2021] [Accepted: 09/26/2021] [Indexed: 11/27/2022] Open
Abstract
Species confined to naturally fragmented habitats may exhibit intrinsic population complexity which may challenge interpretations of species response to anthropogenic landscape transformation. In South Africa, where native forests are naturally fragmented, forest-dependent birds have undergone range declines since 1992, most notably among insectivores. These insectivores appear sensitive to the quality of natural matrix habitats, and it is unknown whether transformation of the landscape matrix has disrupted gene flow in these species. We undertook a landscape genetics study of four forest-dependent insectivorous songbirds across southeast South Africa. Microsatellite data were used to conduct a priori optimization of landscape resistance surfaces (land cover, rivers and dams, and elevation) using cost-distances along least-cost pathway (LCP), and resistance distances (IBR). We detected pronounced declines in effective population sizes over the past two centuries for the endemic forest specialist Cossypha dichroa and Batis capensis, alongside recent gene flow disruption in B. capensis, C. dichroa and Pogonocichla stellata. Landscape resistance modelling showed both native forest and dense thicket configuration facilitates gene flow in P. stellata, B. capensis and C. dichroa. Facultative dispersal of P. stellata through dense thicket likely aided resilience against historic landscape transformation, whereas combined forest-thicket degradation adversely affected the forest generalist B. capensis. By contrast, Phylloscopus ruficapilla appears least reliant upon landscape features to maintain gene flow and was least impacted by anthropogenic landscape transformation. Collectively, gene flow in all four species is improved at lower elevations, along river valleys, and riparian corridors- where native forest and dense thicket better persist. Consistent outperformance of LCP over IBR land-cover models for P. stellata, B. capensis and C. dichroa demonstrates the benefits of wildlife corridors for South African forest-dependent bird conservation, to ameliorate the extinction debts from past and present anthropogenic forest exploitation.
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Affiliation(s)
- Jake M. Mulvaney
- Department of Botany and ZoologyStellenbosch UniversityMatielandSouth Africa
| | - Conrad A. Matthee
- Department of Botany and ZoologyStellenbosch UniversityMatielandSouth Africa
| | - Michael I. Cherry
- Department of Botany and ZoologyStellenbosch UniversityMatielandSouth Africa
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7
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Miller CV, Pittman M. The diet of early birds based on modern and fossil evidence and a new framework for its reconstruction. Biol Rev Camb Philos Soc 2021; 96:2058-2112. [PMID: 34240530 PMCID: PMC8519158 DOI: 10.1111/brv.12743] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 05/07/2021] [Accepted: 05/10/2021] [Indexed: 12/14/2022]
Abstract
Birds are some of the most diverse organisms on Earth, with species inhabiting a wide variety of niches across every major biome. As such, birds are vital to our understanding of modern ecosystems. Unfortunately, our understanding of the evolutionary history of modern ecosystems is hampered by knowledge gaps in the origin of modern bird diversity and ecosystem ecology. A crucial part of addressing these shortcomings is improving our understanding of the earliest birds, the non-avian avialans (i.e. non-crown birds), particularly of their diet. The diet of non-avian avialans has been a matter of debate, in large part because of the ambiguous qualitative approaches that have been used to reconstruct it. Here we review methods for determining diet in modern and fossil avians (i.e. crown birds) as well as non-avian theropods, and comment on their usefulness when applied to non-avian avialans. We use this to propose a set of comparable, quantitative approaches to ascertain fossil bird diet and on this basis provide a consensus of what we currently know about fossil bird diet. While no single approach can precisely predict diet in birds, each can exclude some diets and narrow the dietary possibilities. We recommend combining (i) dental microwear, (ii) landmark-based muscular reconstruction, (iii) stable isotope geochemistry, (iv) body mass estimations, (v) traditional and/or geometric morphometric analysis, (vi) lever modelling, and (vii) finite element analysis to reconstruct fossil bird diet accurately. Our review provides specific methodologies to implement each approach and discusses complications future researchers should keep in mind. We note that current forms of assessment of dental mesowear, skull traditional morphometrics, geometric morphometrics, and certain stable isotope systems have yet to be proven effective at discerning fossil bird diet. On this basis we report the current state of knowledge of non-avian avialan diet which remains very incomplete. The ancestral dietary condition in non-avian avialans remains unclear due to scarce data and contradictory evidence in Archaeopteryx. Among early non-avian pygostylians, Confuciusornis has finite element analysis and mechanical advantage evidence pointing to herbivory, whilst Sapeornis only has mechanical advantage evidence indicating granivory, agreeing with fossilised ingested material known for this taxon. The enantiornithine ornithothoracine Shenqiornis has mechanical advantage and pedal morphometric evidence pointing to carnivory. In the hongshanornithid ornithuromorph Hongshanornis only mechanical advantage evidence indicates granivory, but this agrees with evidence of gastrolith ingestion in this taxon. Mechanical advantage and ingested fish support carnivory in the songlingornithid ornithuromorph Yanornis. Due to the sparsity of robust dietary assignments, no clear trends in non-avian avialan dietary evolution have yet emerged. Dietary diversity seems to increase through time, but this is a preservational bias associated with a predominance of data from the Early Cretaceous Jehol Lagerstätte. With this new framework and our synthesis of the current knowledge of non-avian avialan diet, we expect dietary knowledge and evolutionary trends to become much clearer in the coming years, especially as fossils from other locations and climates are found. This will allow for a deeper and more robust understanding of the role birds played in Mesozoic ecosystems and how this developed into their pivotal role in modern ecosystems.
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Affiliation(s)
- Case Vincent Miller
- Vertebrate Palaeontology Laboratory, Research Division for Earth and Planetary ScienceThe University of Hong KongPokfulamHong Kong SARChina
| | - Michael Pittman
- Vertebrate Palaeontology Laboratory, Research Division for Earth and Planetary ScienceThe University of Hong KongPokfulamHong Kong SARChina
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8
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Claramunt S. Flight efficiency explains differences in natal dispersal distances in birds. Ecology 2021; 102:e03442. [PMID: 34143422 PMCID: PMC8459243 DOI: 10.1002/ecy.3442] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Accepted: 03/16/2021] [Indexed: 11/07/2022]
Abstract
The factors responsible for variation in dispersal distances across species remain poorly understood. Previous comparative studies found differing results and equivocal support for theoretical predictions. Here I re-examine factors that influence natal dispersal distances in British birds while taking into account the cost of transport as estimated from proxies of long-distance flight efficiency. First, I show that flight efficiency, as estimated by the hand-wing index, the aspect ratio, or the lift-to-drag ratio, is a strong predictor of dispersal distances among resident species. Most migratory species showed a similar pattern, but a group of species with relatively low aerodynamic efficiency showed longer-than-expected dispersal distances, making the overall trend independent of flight efficiency. Ecological, behavioral, and life history factors had a small or nil influence on dispersal distances, with most of their influence likely mediated by adaptations for the use of space reflected in flight efficiency. This suggests that dispersal distances in birds are not determined by adaptive strategies for dispersal per se, but are predominantly influenced by the energetic cost of movement.
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Affiliation(s)
- Santiago Claramunt
- Department of Natural HistoryRoyal Ontario Museum100 Queen’s ParkTorontoOntarioM5S 2C6Canada
- Department of Ecology and Evolutionary BiologyUniversity of Toronto25 Willcocks StreetTorontoOntarioM5S 3B2Canada
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9
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Belder DJ, Pierson JC, Rudder AC, Lindenmayer DB. Ongoing declines of woodland birds: Are restoration plantings making a difference? ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2021; 31:e2268. [PMID: 33237571 DOI: 10.1002/eap.2268] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 06/04/2020] [Accepted: 08/16/2020] [Indexed: 06/11/2023]
Abstract
Woodland birds are a species assemblage of conservation concern, and their persistence in fragmented agricultural landscapes is dependent on both the preservation of existing woodland remnants and the implementation of restoration plantings. However, little is known about the habitat-use and persistence of birds in fragmented agricultural landscapes. We present a detailed, population-oriented study of woodland birds in temperate eucalypt woodland restoration plantings and remnant woodland patches in the South-west Slopes bioregion of New South Wales, Australia. First, we undertook a 3-yr mark-recapture project to assess annual survival and site fidelity in restoration plantings and woodland remnants. We supplemented our recapture efforts with resightings of color-banded individuals. Second, we tracked individual birds of two species, Superb Fairywren (Malurus cyaneus) and Willie Wagtail (Rhipidura leucophrys), and documented snapshots of their home ranges and movement patterns during the breeding season. Annual survival in the woodland bird assemblage was lower than expected (51%). Home ranges of the Superb Fairywren were positively correlated with patch size, and were constrained by patch edges in linear sites. Superb Fairywrens and Willie Wagtails were more likely to travel longer distances between substrates while foraging in linear sites. Willie Wagtails engaged in significant gap-crossing (up to 400 m) between adjacent habitat patches. Our findings indicate that (1) patch isolation and certain patch configurations place resident birds at an energetic disadvantage, and (2) in our study area, woodland bird populations are continuing to decline. We recommend landscape-scale habitat restoration programs aim to address ongoing population declines. Studies such as ours conducted over longer time periods would provide a deeper understanding of habitat use and population processes of woodland birds in fragmented agricultural landscapes.
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Affiliation(s)
- Donna J Belder
- Fenner School of Environment and Society, The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
- National Environmental Science Program Threatened Species Recovery Hub, The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
- Australian Wildlife Conservancy, PO Box 8070, Subiaco East, Western Australia, 6008, Australia
| | - Jennifer C Pierson
- Fenner School of Environment and Society, The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
- ACT Parks and Conservation Service, Environment, Planning and Sustainable Development Directorate, ACT Government, Canberra, Australian Capital Territory, 2602, Australia
| | - Ashwin C Rudder
- Australian Wildlife Conservancy, PO Box 8070, Subiaco East, Western Australia, 6008, Australia
| | - David B Lindenmayer
- Fenner School of Environment and Society, The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
- National Environmental Science Program Threatened Species Recovery Hub, The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
- Sustainable Farms, The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
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Yackulic CB, Dodrill M, Dzul M, Sanderlin JS, Reid JA. A need for speed in Bayesian population models: a practical guide to marginalizing and recovering discrete latent states. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2020; 30:e02112. [PMID: 32112492 DOI: 10.1002/eap.2112] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 01/24/2020] [Indexed: 06/10/2023]
Abstract
Bayesian population models can be exceedingly slow due, in part, to the choice to simulate discrete latent states. Here, we discuss an alternative approach to discrete latent states, marginalization, that forms the basis of maximum likelihood population models and is much faster. Our manuscript has two goals: (1) to introduce readers unfamiliar with marginalization to the concept and provide worked examples and (2) to address topics associated with marginalization that have not been previously synthesized and are relevant to both Bayesian and maximum likelihood models. We begin by explaining marginalization using a Cormack-Jolly-Seber model. Next, we apply marginalization to multistate capture-recapture, community occupancy, and integrated population models and briefly discuss random effects, priors, and pseudo-R2 . Then, we focus on recovery of discrete latent states, defining different types of conditional probabilities and showing how quantities such as population abundance or species richness can be estimated in marginalized code. Last, we show that occupancy and site-abundance models with auto-covariates can be fit with marginalized code with minimal impact on parameter estimates. Marginalized code was anywhere from five to >1,000 times faster than discrete code and differences in inferences were minimal. Discrete latent states and fully conditional approaches provide the best estimates of conditional probabilities for a given site or individual. However, estimates for parameters and derived quantities such as species richness and abundance are minimally affected by marginalization. In the case of abundance, marginalized code is both quicker and has lower bias than an N-augmentation approach. Understanding how marginalization works shrinks the divide between Bayesian and maximum likelihood approaches to population models. Some models that have only been presented in a Bayesian framework can easily be fit in maximum likelihood. On the other hand, factors such as informative priors, random effects, or pseudo-R2 values may motivate a Bayesian approach in some applications. An understanding of marginalization allows users to minimize the speed that is sacrificed when switching from a maximum likelihood approach. Widespread application of marginalization in Bayesian population models will facilitate more thorough simulation studies, comparisons of alternative model structures, and faster learning.
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Affiliation(s)
- Charles B Yackulic
- Southwest Biological Science Center, U.S. Geological Survey, 2255 North Gemini Drive, Flagstaff, Arizona, 86001, USA
| | - Michael Dodrill
- Southwest Biological Science Center, U.S. Geological Survey, 2255 North Gemini Drive, Flagstaff, Arizona, 86001, USA
| | - Maria Dzul
- Southwest Biological Science Center, U.S. Geological Survey, 2255 North Gemini Drive, Flagstaff, Arizona, 86001, USA
| | - Jamie S Sanderlin
- USDA Forest Service, Rocky Mountain Research Station, Flagstaff, Arizona, 86001, USA
| | - Janice A Reid
- USDA Forest Service, Pacific Northwest Research Station, Roseburg Field Station, Roseburg, Oregon, 97331, USA
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Affiliation(s)
- Mevin B. Hooten
- Colorado Cooperative Fish and Wildlife Research Unit, U.S. Geological Survey, Fort Collins, CO
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, CO
- Department of Statistics, Colorado State University, Fort Collins, CO
| | - Devin S. Johnson
- Marine Mammal Laboratory, Alaska Fisheries Science Center, NOAA Fisheries, Seattle, WA
| | - Brian M. Brost
- Marine Mammal Laboratory, Alaska Fisheries Science Center, NOAA Fisheries, Seattle, WA
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12
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Fattebert J, Perrig M, Naef-Daenzer B, Grüebler MU. Experimentally disentangling intrinsic and extrinsic drivers of natal dispersal in a nocturnal raptor. Proc Biol Sci 2019; 286:20191537. [PMID: 31480971 DOI: 10.1098/rspb.2019.1537] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Equivocal knowledge of the phase-specific drivers of natal dispersal remains a major deficit in understanding causes and consequences of dispersal and thus, spatial dynamics within and between populations. We performed a field experiment combining partial cross-fostering of nestlings and nestling food supplementation in little owls (Athene noctua). This approach disentangled the effect of nestling origin from the effect of the rearing environment on dispersal behaviour, while simultaneously investigating the effect of food availability in the rearing environment. We radio-tracked fledglings to quantify the timing of pre-emigration forays and emigration, foray and transfer duration, and the dispersal distances. Dispersal characteristics of the pre-emigration phase were affected by the rearing environment rather than by the origin of nestlings. In food-poor habitats, supplemented individuals emigrated later than unsupplemented individuals. By contrast, transfer duration and distance were influenced by the birds' origin rather than by their rearing environment. We found no correlation between timing of emigration and transfer duration or distance. We conclude that food supply to the nestlings and other characteristics of the rearing environment modulate the timing of emigration, while innate traits associated with the nestling origin affect the transfer phases after emigration. The dispersal behaviours of juveniles prior and after emigration, therefore, were related to different determinants, and are suggested to form different life-history traits.
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Affiliation(s)
- Julien Fattebert
- Swiss Ornithological Institute, CH-6204 Sempach, Switzerland.,Centre for Functional Biodiversity, School of Life Sciences, University of KwaZulu-Natal, Durban 4000, South Africa
| | - Marco Perrig
- Swiss Ornithological Institute, CH-6204 Sempach, Switzerland
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13
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Yalcin S, Leroux SJ. An empirical test of the relative and combined effects of land-cover and climate change on local colonization and extinction. GLOBAL CHANGE BIOLOGY 2018; 24:3849-3861. [PMID: 29656456 DOI: 10.1111/gcb.14169] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2017] [Revised: 03/25/2018] [Accepted: 04/01/2018] [Indexed: 06/08/2023]
Abstract
Land-cover and climate change are two main drivers of changes in species ranges. Yet, the majority of studies investigating the impacts of global change on biodiversity focus on one global change driver and usually use simulations to project biodiversity responses to future conditions. We conduct an empirical test of the relative and combined effects of land-cover and climate change on species occurrence changes. Specifically, we examine whether observed local colonization and extinctions of North American birds between 1981-1985 and 2001-2005 are correlated with land-cover and climate change and whether bird life history and ecological traits explain interspecific variation in observed occurrence changes. We fit logistic regression models to test the impact of physical land-cover change, changes in net primary productivity, winter precipitation, mean summer temperature, and mean winter temperature on the probability of Ontario breeding bird local colonization and extinction. Models with climate change, land-cover change, and the combination of these two drivers were the top ranked models of local colonization for 30%, 27%, and 29% of species, respectively. Conversely, models with climate change, land-cover change, and the combination of these two drivers were the top ranked models of local extinction for 61%, 7%, and 9% of species, respectively. The quantitative impacts of land-cover and climate change variables also vary among bird species. We then fit linear regression models to test whether the variation in regional colonization and extinction rate could be explained by mean body mass, migratory strategy, and habitat preference of birds. Overall, species traits were weakly correlated with heterogeneity in species occurrence changes. We provide empirical evidence showing that land-cover change, climate change, and the combination of multiple global change drivers can differentially explain observed species local colonization and extinction.
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Affiliation(s)
- Semra Yalcin
- Department of Biology, Faculty of Science, Memorial University of Newfoundland, St. John's, NL, Canada
| | - Shawn James Leroux
- Department of Biology, Faculty of Science, Memorial University of Newfoundland, St. John's, NL, Canada
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Martin AE, Fahrig L. Habitat specialist birds disperse farther and are more migratory than habitat generalist birds. Ecology 2018; 99:2058-2066. [PMID: 29920659 DOI: 10.1002/ecy.2428] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Revised: 12/05/2017] [Accepted: 05/23/2018] [Indexed: 11/07/2022]
Abstract
Some theories predict habitat specialists should be less dispersive and migratory than generalists, while other theories predict the opposite. We evaluated the cross-species relationship between the degree of habitat specialization and dispersal and migration status in 101 bird species breeding in North America and the United Kingdom, using empirical estimates of the degree of habitat specialization from breeding bird surveys and mean dispersal distance estimates from large-scale mark-recapture studies. We found that habitat specialists dispersed farther than habitat generalists, and full migrants had more specialized habitat than partial migrants or resident species. To our knowledge this is the first large-scale, multi-species study to demonstrate a positive relationship between the degree of habitat specialization and dispersal, and it is opposite to the pattern found for invertebrates. This finding is particularly interesting because it suggests that trade-offs between the degree of habitat specialization and dispersal ability are not conserved across taxonomic groups. This cautions against extrapolation of trait co-occurrence from one species group to another. In particular, it suggests that efforts aimed at conserving the most habitat-specialist temperate-breeding birds will not lead to conservation of the most dispersal-limited species.
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Affiliation(s)
- Amanda E Martin
- Geomatics and Landscape Ecology Laboratory (GLEL), Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, K1S 5B6, Canada
| | - Lenore Fahrig
- Geomatics and Landscape Ecology Laboratory (GLEL), Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, K1S 5B6, Canada
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Fraser H, Rumpff L, Yen JDL, Robinson D, Wintle BA. Integrated models to support multiobjective ecological restoration decisions. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2017; 31:1418-1427. [PMID: 28339135 DOI: 10.1111/cobi.12939] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Many objectives motivate ecological restoration, including improving vegetation condition, increasing the range and abundance of threatened species, and improving species richness and diversity. Although models have been used to examine the outcomes of ecological restoration, few researchers have attempted to develop models to account for multiple, potentially competing objectives. We developed a combined state-and-transition, species-distribution model to predict the effects of restoration actions on vegetation condition and extent, bird diversity, and the distribution of several bird species in southeastern Australian woodlands. The actions reflected several management objectives. We then validated the models against an independent data set and investigated how the best management decision might change when objectives were valued differently. We also used model results to identify effective restoration options for vegetation and bird species under a constrained budget. In the examples we evaluated, no one action (improving vegetation condition and extent, increasing bird diversity, or increasing the probability of occurrence for threatened species) provided the best outcome across all objectives. In agricultural lands, the optimal management actions for promoting the occurrence of the Brown Treecreeper (Climacteris picumnus), an iconic threatened species, resulted in little improvement in the extent of the vegetation and a high probability of decreased vegetation condition. This result highlights that the best management action in any situation depends on how much the different objectives are valued. In our example scenario, no management or weed control were most likely to be the best management options to satisfy multiple restoration objectives. Our approach to exploring trade-offs in management outcomes through integrated modeling and structured decision-support approaches has wide application for situations in which trade-offs exist between competing conservation objectives.
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Affiliation(s)
- Hannah Fraser
- School of BioSciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Libby Rumpff
- School of BioSciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Jian D L Yen
- School of BioSciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Doug Robinson
- Trust for Nature, 5/379 Collins Street, Melbourne Victoria, 3000, Australia
| | - Brendan A Wintle
- School of BioSciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
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Martin AE, Fahrig L. Reconciling contradictory relationships between mobility and extinction risk in human‐altered landscapes. Funct Ecol 2016. [DOI: 10.1111/1365-2435.12632] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Amanda E. Martin
- Geomatics and Landscape Ecology Laboratory Ottawa‐Carleton Institute of Biology Carleton University 1125 Colonel By Drive Ottawa ON K1S 5B6 Canada
| | - Lenore Fahrig
- Geomatics and Landscape Ecology Laboratory Ottawa‐Carleton Institute of Biology Carleton University 1125 Colonel By Drive Ottawa ON K1S 5B6 Canada
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Fraser H, Garrard GE, Rumpff L, Hauser CE, McCarthy MA. Consequences of inconsistently classifying woodland birds. Front Ecol Evol 2015. [DOI: 10.3389/fevo.2015.00083] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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18
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Vardakis M, Goos P, Adriaensen F, Matthysen E. Discrete choice modelling of natal dispersal: ‘Choosing’ where to breed from a finite set of available areas. Methods Ecol Evol 2015. [DOI: 10.1111/2041-210x.12404] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michalis Vardakis
- Evolutionary Ecology Group Universiteit Antwerpen Groenenborgerlaan 171 B‐2020 Antwerpen Belgium
| | - Peter Goos
- Department Engineering Management Universiteit Antwerpen Antwerpen Belgium
- Faculty of Bioscience Engineering Katholieke Universiteit Leuven Flanders Belgium
| | - Frank Adriaensen
- Evolutionary Ecology Group Universiteit Antwerpen Groenenborgerlaan 171 B‐2020 Antwerpen Belgium
| | - Erik Matthysen
- Evolutionary Ecology Group Universiteit Antwerpen Groenenborgerlaan 171 B‐2020 Antwerpen Belgium
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Tracking natal dispersal in a coastal population of a migratory songbird using feather stable isotope (δ2H, δ34S) tracers. PLoS One 2014; 9:e94437. [PMID: 24740314 PMCID: PMC3989223 DOI: 10.1371/journal.pone.0094437] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2013] [Accepted: 03/17/2014] [Indexed: 11/19/2022] Open
Abstract
Adult birds tend to show high fidelity to their breeding territory or disperse over relatively short distances. Gene flow among avian populations is thus expected to occur primarily through natal dispersal. Although natal dispersal is a critical demographic process reflecting the area over which population dynamics take place, low recapture rates of birds breeding for the first time have limited our ability to reliably estimate dispersal rates and distances. Stable isotope approaches can elucidate origins of unmarked birds and so we generated year- and age-specific δ2H and δ34S feather isoscapes (ca. 180 000 km2) of coastal-breeding Ovenbirds (Seiurus aurocapilla) and used bivariate probability density functions to assign the likely natal areas of 35 males recruited as first-year breeders into a population located in northwestern New Brunswick, Canada. Most individuals (80-94% depending on the magnitude of an age correction factor used; i.e. 28-33 out of 35) were classified as residents (i.e. fledged within our study area) and estimated minimum dispersal distances of immigrants were between 40 and 240 km. Even when considering maximum dispersal distances, the likely origin of most first-year breeders was<200 km from our study area. Our method identified recruitment into our population from large geographic areas with relatively few samples whereas previous mark-recapture based methods have required orders of magnitude more individuals to describe dispersal at such geographic scales. Natal dispersal movements revealed here suggest the spatial scale over which many population processes are taking place and we suggest that conservation plans aiming to maintain populations of Ovenbirds and ecologically-similar species should consider management units within 100 or at most 200 km of target breeding populations.
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Tamme R, Götzenberger L, Zobel M, Bullock JM, Hooftman DAP, Kaasik A, Pärtel M. Predicting species' maximum dispersal distances from simple plant traits. Ecology 2014; 95:505-13. [PMID: 24669743 DOI: 10.1890/13-1000.1] [Citation(s) in RCA: 164] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Many studies have shown plant species' dispersal distances to be strongly related to life-history traits, but how well different traits can predict dispersal distances is not yet known. We used cross-validation techniques and a global data set (576 plant species) to measure the predictive power of simple plant traits to estimate species' maximum dispersal distances. Including dispersal syndrome (wind, animal, ant, ballistic, and no special syndrome), growth form (tree, shrub, herb), seed mass, seed release height, and terminal velocity in different combinations as explanatory variables we constructed models to explain variation in measured maximum dispersal distances and evaluated their power to predict maximum dispersal distances. Predictions are more accurate, but also limited to a particular set of species, if data on more specific traits, such as terminal velocity, are available. The best model (R2 = 0.60) included dispersal syndrome, growth form, and terminal velocity as fixed effects. Reasonable predictions of maximum dispersal distance (R2 = 0.53) are also possible when using only the simplest and most commonly measured traits; dispersal syndrome and growth form together with species taxonomy data. We provide a function (dispeRsal) to be run in the software package R. This enables researchers to estimate maximum dispersal distances with confidence intervals for plant species using measured traits as predictors. Easily obtainable trait data, such as dispersal syndrome (inferred from seed morphology) and growth form, enable predictions to be made for a large number of species.
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Scandolara C, Lardelli R, Sgarbi G, Caprioli M, Ambrosini R, Rubolini D, Saino N. Context-, phenotype-, and kin-dependent natal dispersal of barn swallows (Hirundo rustica). Behav Ecol 2013. [DOI: 10.1093/beheco/art103] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Schmidt JH, Rattenbury KL. Reducing effort while improving inference: Estimating Dall's sheep abundance and composition in small areas. J Wildl Manage 2013. [DOI: 10.1002/jwmg.557] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Joshua H. Schmidt
- U.S. National Park Service; Central Alaska Network; 4175 Geist Road Fairbanks AK 99709 USA
| | - Kumi L. Rattenbury
- U.S. National Park Service; Arctic Network; 4175 Geist Road Fairbanks AK 99709 USA
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Nimmo DG, Kelly LT, Spence-Bailey LM, Watson SJ, Taylor RS, Clarke MF, Bennett AF. Fire mosaics and reptile conservation in a fire-prone region. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2013; 27:345-353. [PMID: 23163245 DOI: 10.1111/j.1523-1739.2012.01958.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2012] [Accepted: 07/06/2012] [Indexed: 06/01/2023]
Abstract
Fire influences the distribution of fauna in terrestrial biomes throughout the world. Use of fire to achieve a mosaic of vegetation in different stages of succession after burning (i.e., patch-mosaic burning) is a dominant conservation practice in many regions. Despite this, knowledge of how the spatial attributes of vegetation mosaics created by fire affect fauna is extremely scarce, and it is unclear what kind of mosaic land managers should aim to achieve. We selected 28 landscapes (each 12.6 km(2) ) that varied in the spatial extent and diversity of vegetation succession after fire in a 104,000 km(2) area in the semiarid region of southeastern Australia. We surveyed for reptiles at 280 sites nested within the 28 landscapes. The landscape-level occurrence of 9 of the 22 species modeled was associated with the spatial extent of vegetation age classes created by fire. Biogeographic context and the extent of a vegetation type influenced 7 and 4 species, respectively. No species were associated with the diversity of vegetation ages within a landscape. Negative relations between reptile occurrence and both extent of recently burned vegetation (≤10 years postfire, n = 6) and long unburned vegetation (>35 years postfire, n = 4) suggested that a coarse-grained mosaic of areas (e.g. >1000 ha) of midsuccessional vegetation (11-35 years postfire) may support the fire-sensitive reptile species we modeled. This age class coincides with a peak in spinifex cover, a keystone structure for reptiles in semiarid and arid Australia. Maintaining over the long term a coarse-grained mosaic of large areas of midsuccessional vegetation in mallee ecosystems will need to be balanced against the short-term negative effects of large fires on many reptile species and a documented preference by species from other taxonomic groups, particularly birds, for older vegetation.
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Affiliation(s)
- D G Nimmo
- Landscape Ecology Research Group, School of Life and Environmental Sciences, Deakin University, Burwood, Victoria, 3125, Australia
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Effects of management intervention on post-disturbance community composition: an experimental analysis using bayesian hierarchical models. PLoS One 2013; 8:e59900. [PMID: 23533659 PMCID: PMC3606292 DOI: 10.1371/journal.pone.0059900] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2012] [Accepted: 02/19/2013] [Indexed: 11/25/2022] Open
Abstract
As human demand for ecosystem products increases, management intervention may become more frequent after environmental disturbances. Evaluations of ecological responses to cumulative effects of management interventions and natural disturbances provide critical decision-support tools for managers who strive to balance environmental conservation and economic development. We conducted an experiment to evaluate the effects of salvage logging on avian community composition in lodgepole pine (Pinus contorta) forests affected by beetle outbreaks in Oregon, USA, 1996–1998. Treatments consisted of the removal of lodgepole pine snags only, and live trees were not harvested. We used a Bayesian hierarchical model to quantify occupancy dynamics for 27 breeding species, while accounting for variation in the detection process. We examined how magnitude and precision of treatment effects varied when incorporating prior information from a separate intervention study that occurred in a similar ecological system. Regardless of which prior we evaluated, we found no evidence that the harvest treatment had a negative impact on species richness, with an estimated average of 0.2–2.2 more species in harvested stands than unharvested stands. Estimated average similarity between control and treatment stands ranged from 0.82–0.87 (1 indicating complete similarity between a pair of stands) and suggested that treatment stands did not contain novel assemblies of species responding to the harvesting prescription. Estimated treatment effects were positive for twenty-four (90%) of the species, although the credible intervals contained 0 in all cases. These results suggest that, unlike most post-fire salvage logging prescriptions, selective harvesting after beetle outbreaks may meet multiple management objectives, including the maintenance of avian community richness comparable to what is found in unharvested stands. Our results provide managers with prescription alternatives to respond to severe beetle outbreaks that continue to occur across extensive portions of the dry forests of western North America.
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Morris WK, Vesk PA, McCarthy MA. Profiting from pilot studies: Analysing mortality using Bayesian models with informative priors. Basic Appl Ecol 2013. [DOI: 10.1016/j.baae.2012.11.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Whitmee S, Orme CDL. Predicting dispersal distance in mammals: a trait-based approach. J Anim Ecol 2012; 82:211-21. [PMID: 22924343 DOI: 10.1111/j.1365-2656.2012.02030.x] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2011] [Accepted: 07/16/2012] [Indexed: 11/26/2022]
Abstract
Dispersal is one of the principal mechanisms influencing ecological and evolutionary processes but quantitative empirical data are unfortunately scarce. As dispersal is likely to influence population responses to climate change, whether by adaptation or by migration, there is an urgent need to obtain estimates of dispersal distance. Cross-species correlative approaches identifying predictors of dispersal distance can provide much-needed insights into this data-scarce area. Here, we describe the compilation of a new data set of natal dispersal distances and use it to test life-history predictors of dispersal distance in mammals and examine the strength of the phylogenetic signal in dispersal distance. We find that both maximum and median dispersal distances have strong phylogenetic signals. No single model performs best in describing either maximum or median dispersal distances when phylogeny is taken into account but many models show high explanatory power, suggesting that dispersal distance per generation can be estimated for mammals with comparatively little data availability. Home range area, geographic range size and body mass are identified as the most important terms across models. Cross-validation of models supports the ability of these variables to predict dispersal distances, suggesting that models may be extended to species where dispersal distance is unknown.
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Affiliation(s)
- Sarah Whitmee
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire, SL5 7PY, UK.
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Amos JN, Bennett AF, Mac Nally R, Newell G, Pavlova A, Radford JQ, Thomson JR, White M, Sunnucks P. Predicting landscape-genetic consequences of habitat loss, fragmentation and mobility for multiple species of woodland birds. PLoS One 2012; 7:e30888. [PMID: 22363508 PMCID: PMC3281894 DOI: 10.1371/journal.pone.0030888] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2011] [Accepted: 12/22/2011] [Indexed: 11/18/2022] Open
Abstract
Inference concerning the impact of habitat fragmentation on dispersal and gene flow is a key theme in landscape genetics. Recently, the ability of established approaches to identify reliably the differential effects of landscape structure (e.g. land-cover composition, remnant vegetation configuration and extent) on the mobility of organisms has been questioned. More explicit methods of predicting and testing for such effects must move beyond post hoc explanations for single landscapes and species. Here, we document a process for making a priori predictions, using existing spatial and ecological data and expert opinion, of the effects of landscape structure on genetic structure of multiple species across replicated landscape blocks. We compare the results of two common methods for estimating the influence of landscape structure on effective distance: least-cost path analysis and isolation-by-resistance. We present a series of alternative models of genetic connectivity in the study area, represented by different landscape resistance surfaces for calculating effective distance, and identify appropriate null models. The process is applied to ten species of sympatric woodland-dependant birds. For each species, we rank a priori the expectation of fit of genetic response to the models according to the expected response of birds to loss of structural connectivity and landscape-scale tree-cover. These rankings (our hypotheses) are presented for testing with empirical genetic data in a subsequent contribution. We propose that this replicated landscape, multi-species approach offers a robust method for identifying the likely effects of landscape fragmentation on dispersal.
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Affiliation(s)
- J Nevil Amos
- School of Biological Sciences and Australian Centre for Biodiversity, Monash University, Melbourne, Victoria, Australia.
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