Cranial size and shape variation in mainland and island populations of the quokka

Haematology and blood chemistry in free-ranging quokkas (Setonix brachyurus): Reference intervals and assessing the effects of site, sampling time, and infectious agents

Quokkas (Setonix brachyurus) are small macropodid marsupials from Western Australia, which are identified as of conservation concern. Studies on their blood analytes exist but involve small sample sizes and are associated with very little information concerning the health of the animals. Blood was collected from free-ranging quokkas from Rottnest Island (n = 113) and mainland (n = 37) Western Australia, between September 2010 and December 2011, to establish haematology and blood chemistry reference intervals. Differences in haematology and blood chemistry between sites (Rottnest Island v mainland) were significant for haematology (HMT, p = 0.003), blood chemistry (BLC, p = 0.001) and peripheral blood cell morphology (PBCM, p = 0.001). Except for alkaline phosphatase, all blood chemistry analytes were higher in mainland animals. There were also differences with time of year in HMT (p = 0.001), BLC (p = 0.001) and PBCM (p = 0.001) for Rottnest Island quokkas. A small sample of captive animals (n = 8) were opportunistically sampled for plasma concentrations of vitamin E and were found to be deficient compared with wild-caught animals. Fifty-eight of the 150 quokkas were also tested for the presence of Salmonella, microfilariae, Macropodid herpesvirus-6, Theileria spp., Babesia spp., trypanosomes, Cryptococcus spp. and other saprophytic fungi. All eight infectious agents were detected in this study. Infectious agents were detected in 24 of these 58 quokkas (41%), with more than one infectious agent detected for all 24 individuals. Salmonella were detected concurrently with microfilariae in 8 of these 24 quokkas, and this mixed infection was associated with lower values across all haematological analytes, with Salmonella having the greater involvement in the decreased haematological values (p < 0.05). There was no evidence for an effect of sex on HMT, BLC and PBCM. Our data provide important haematological and blood chemistry reference intervals for free-ranging quokkas. We applied novel methods of analyses to HMT and BLC that can be used more broadly, aiding identification of potential disease in wildlife.

Morphological variation in two sigmodontine rodents along the mainland and the Fuegian archipelago in Chilean southern Patagonia

Background

Analysis of morphological variation in archipelagos has been essential to understand the evolution of terrestrial vertebrates. In particular, these natural scenarios allow to assess morphological changes experienced by insular fauna compared to their mainland counterparts. In mammals, morphological changes of insular forms have been observed in size and shape of body and cranial traits. The southern Patagonia of Chile represents a unique scenario to analyze morphological variation in two of the most widely distributed small rodents along western southern South America: Abrothrix olivacea and Oligoryzomys longicaudatus.

Methods

We applied linear and three-dimensional geometric morphometric tools to analyze the variation in cranial morphology of A. olivacea (N = 80) and O. longicaudatus (N = 49). Sampled localities were distributed in the mainland and islands of the Fuegian archipelago in Chilean Patagonia. Standard multivariate methods, as Principal Components Analysis, and Logistic Regression models were carried out to evaluate differences in size and shape of crania.

Results

We detected higher levels of morphological variation in the crania of A. olivacea if compared to O. longicaudatus. The variation was associated to cranial size instead of shape.

We observed significant differences between insular and mainland individuals in A. olivacea, being the cranium size of this species significantly bigger on islands. Indeed, specimens of A. olivacea from “Isla Wellington”, exhibited the higher increment in cranium size compared to any other mainland and insular site sampled for this species. In contrast, insular and mainland forms of O. longicaudatus did not show significant differences in cranial morphology.

Conclusions

We suggest that the patterns of morphological variation observed in these two small rodents along Patagonia, could be explained in terms of the historical biogeography of the region, and the different ecological features of the studied species.

Habitats modified for tourism affect the movement patterns of an endemic marsupial, the Rottnest Island quokka (Setonix brachyurus)

The quokka (Setonix brachyurus), an iconic marsupial endemic to Western Australia, is listed as vulnerable. It is found at its greatest abundance on Rottnest Island, where little is known about its home range and movement patterns. We estimated the home ranges of 22 male and 23 female quokkas within each season in four habitat types on Rottnest Island: coastal dune, grass/heath, woodland and settlement areas developed for tourism. We also tested for factors affecting home range and space use. The mean seasonal home-range size of quokkas was 1.91 ± 0.23 ha, and there was no effect of sex or weight, habitat type or wet or dry periods on the size of the home ranges. Home-range overlap during both night and day was significantly lower in the settlement (25.9%), compared with costal dunes (78.5%), woodlands (70.3%) and grass/heath (66.6%). This was due to feeding and resting sites being spatially separated, with quokkas resting outside of the settled areas during the day and travelling back to these areas to feed at night. This research demonstrates how tourism development can impact on the behaviour and movement patterns of local species and will inform future management of the quokka on Rottnest Island.

Do island populations differ in size and shape compared to mainland counterparts?

Adaptation and evolution of terrestrial vertebrates inhabiting islands have been the topic of many studies, particularly those seeking to identify trends or patterns in body size in mammals, albeit not necessarily in shape, in relation to mainland populations. The spiny pocket mouse, Chaetodipus spinatus, is distributed in the Baja California peninsula and its surrounding islands. Insular populations became isolated ~12,000 due to changes in sea level; these populations’ matrilinear (mitochondrial) DNA shows minor interpopulation variation. We tested the hypothesis that adaptation and evolution in these island populations involve variation in both skull size and skull shape (using geometric morphometrics) relative to mainland populations, rather than only in size as previously assumed. A total of 363 specimens from 15 insular and peninsular populations were used in analysis of the skull length and geometric morphometric analyses. Our findings revealed significant differences related to skull size among population. The skull shape analyses showed two significantly different morphotypes: one for all island specimens and one for all mainland samples. Our analyses support the hypothesis that insular populations may not only vary in size relative to mainland populations, but may also show variations in shape, regardless of differing conditions across islands.

Individual variation of the masticatory system dominates 3D skull shape in the herbivory-adapted marsupial wombats

Background

Within-species skull shape variation of marsupial mammals is widely considered low and strongly size-dependent (allometric), possibly due to developmental constraints arising from the altricial birth of marsupials. However, species whose skulls are impacted by strong muscular stresses – particularly those produced through mastication of tough food items – may not display such intrinsic patterns very clearly because of the known plastic response of bone to muscle activity of the individual. In such cases, allometry may not dominate within-species shape variation, even if it is a driver of evolutionary shape divergence; ordination of shape in a geometric morphometric context through principal component analysis (PCA) should reveal main variation in areas under masticatory stress (incisor region/zygomatic arches/mandibular ramus); but this main variation should emerge from high individual variability and thus have low eigenvalues.

Results

We assessed the evidence for high individual variation through 3D geometric morphometric shape analysis of crania and mandibles of three species of grazing-specialized wombats, whose diet of tough grasses puts considerable strain on their masticatory system. As expected, we found little allometry and low Principal Component 1 (PC1) eigenvalues within crania and mandibles of all three species. Also as expected, the main variation was in the muzzle, zygomatic arches, and masticatory muscle attachments of the mandibular ramus. We then implemented a new test to ask if the landmark variation reflected on PC1 was reflected in individuals with opposite PC1 scores and with opposite shapes in Procrustes space. This showed that correspondence between individual and ordinated shape variation was limited, indicating high levels of individual variability in the masticatory apparatus.

Discussion

Our results are inconsistent with hypotheses that skull shape variation within marsupial species reflects a constraint pattern. Rather, they support suggestions that individual plasticity can be an important determinant of within-species shape variation in marsupials (and possibly other mammals) with high masticatory stresses, making it difficult to understand the degree to which intrinsic constraints act on shape variation at the within-species level. We conclude that studies that link micro- and macroevolutionary patterns of shape variation might benefit from a focus on species with low-impact mastication, such as carnivorous or frugivorous species.

Persistence of remnant patches and genetic loss at the distribution periphery in island and mainland populations of the quokka

Understanding the spatial structure of populations is important in developing effective management options for threatened species, and for managing habitat connectivity for metapopulation function, and for demographic and genetic heterogeneity. We used genetic information to investigate the structure of populations of the quokka, Setonix brachyurus, in south-west Western Australia. We hypothesised that movement between known populations would be relatively rare and result in significant genetic structuring. Genetic analyses from 412 adult individuals at 14 nuclear markers (microsatellite) from 33 sampling locations identified structure, diversity and spatial separation of quokkas across their mainland distribution and on two islands. We identified nine inferred (K = 9) populations of quokka that would be otherwise difficult to define with standard ecological techniques. The highest genetic diversity was evident in a large central population of quokka in the southern forest area and genetic diversity was lower at the peripheries of the distribution. The Rottnest Island population contained 70% of the genetic diversity of the mainland populations but the genetic diversity of animals on Bald Island was markedly lower. Populations of quokka in the northern jarrah forest were the only ones to show evidence of recent or long-term population bottlenecking. Of particular interest was the recently identified population at the Muddy Lakes area (the only remaining locality on the Swan Coastal Plain), which was identified as being genetically associated with the southern forest population. Overall, spatial and population cluster analysis showed small insular populations in the northern jarrah forest area, but in the southern forests there appears to be a large panmictic population.

Delimitation of a continuous morphological character with unknown prior membership: application of a finite mixture model to classify scapular setae of Abacarus panticis

Unambiguous classification is a prerequisite for the study of polymorphism, but accurate delimitation of continuous morphological characters can be challenging. Finite mixture modeling is a rigorous and flexible approach for delimiting continuous variables with unknown prior membership, but its application to morphological studies remains limited. In this study, the lengths of scapular setae of the eriophyoid mite Abacarus panticis Keifer collected from 18 sites in Taiwan were used as an example to evaluate the eligibility of finite mixture models. We then tested the hypothesis that longer scapular setae can facilitate dispersal. Lastly, we investigate morphological variation in various seta morphs by geometric morphometric techniques. Finite mixture models can satisfactorily classify scapular setae of A. panticis into long and short seta morphs. Abacarus panticis of the long morph only occurred in five sites whereas the short seta morph existed in all study sites. Geometric morphometric analyses revealed a more elongated coxal area in individuals of long morph than in those of short morph. Because the short morph is more widespread in geographical distribution than the long morph, longer scapular setae seem unlikely a specialized adaptation for dispersal. Further studies should capitalize on the finite mixture model in the delimitation of continuous morphological characters.