|
1
|
Liu Y, Kanrar S, Elder J, Ream A, Huang L, Gehring A, Uhlich G, Clabots C, Johnson JR. Whole-genome sequencing and characterization of Escherichia coli human isolate DP033. Microbiol Resour Announc 2024; 13:e0079223. [PMID: 38099682 DOI: 10.1128/mra.00792-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Accepted: 11/19/2023] [Indexed: 01/18/2024] Open
Abstract
The whole-genome sequence of Escherichia coli strain DP033 is reported here. DP033 was isolated from a human rectal specimen in Tilburg, the Netherlands. In silico analysis showed that DP033 possessed 36 virulence-related genes and is a presumptive extraintestinal pathogenic E. coli and uropathogenic E. coli strain.
Collapse
Affiliation(s)
- Yanhong Liu
- Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center , Wyndmoor, Pennsylvania, USA
| | - Siddhartha Kanrar
- Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center , Wyndmoor, Pennsylvania, USA
| | - Jacob Elder
- Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center , Wyndmoor, Pennsylvania, USA
| | - Amy Ream
- Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center , Wyndmoor, Pennsylvania, USA
| | - Lihan Huang
- Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center , Wyndmoor, Pennsylvania, USA
| | - Andrew Gehring
- Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center , Wyndmoor, Pennsylvania, USA
| | - Gaylen Uhlich
- Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center , Wyndmoor, Pennsylvania, USA
| | - Connie Clabots
- Minneapolis VA Health Care System , Minneapolis, Minnesota, USA
| | - James R Johnson
- Minneapolis VA Health Care System , Minneapolis, Minnesota, USA
- Division of Infectious Diseases and International Medicine, Department of Medicine, University of Minnesota , Minneapolis, Minnesota, USA
| |
Collapse
|
|
2
|
Xu A, Scullen O, Sheen S, Liu Y, Johnson JR, Sommers CH. Inactivation of extraintestinal pathogenic E. coli suspended in ground chicken meat by high pressure processing and identification of virulence factors which may affect resistance to high pressure. Food Control 2020. [DOI: 10.1016/j.foodcont.2019.107070] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
|
3
|
Xu A, Scullen OJ, Sheen S, Johnson JR, Sommers CH. Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation. Food Microbiol 2019; 84:103264. [DOI: 10.1016/j.fm.2019.103264] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Revised: 06/24/2019] [Accepted: 07/05/2019] [Indexed: 01/12/2023]
|
|
4
|
Thermal inactivation of extraintestinal pathogenic Escherichia coli suspended in ground chicken meat. Food Control 2019. [DOI: 10.1016/j.foodcont.2019.05.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
|