1
|
Bisen M, Kharga K, Mehta S, Jabi N, Kumar L. Bacteriophages in nature: recent advances in research tools and diverse environmental and biotechnological applications. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:22199-22242. [PMID: 38411907 DOI: 10.1007/s11356-024-32535-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 02/15/2024] [Indexed: 02/28/2024]
Abstract
Bacteriophages infect and replicate within bacteria and play a key role in the environment, particularly in microbial ecosystems and bacterial population dynamics. The increasing recognition of their significance stems from their wide array of environmental and biotechnological uses, which encompass the mounting issue of antimicrobial resistance (AMR). Beyond their therapeutic potential in combating antibiotic-resistant infections, bacteriophages also find vast applications such as water quality monitoring, bioremediation, and nutrient cycling within environmental sciences. Researchers are actively involved in isolating and characterizing bacteriophages from different natural sources to explore their applications. Gaining insights into key aspects such as the life cycle of bacteriophages, their host range, immune interactions, and physical stability is vital to enhance their application potential. The establishment of diverse phage libraries has become indispensable to facilitate their wide-ranging uses. Consequently, numerous protocols, ranging from traditional to cutting-edge techniques, have been developed for the isolation, detection, purification, and characterization of bacteriophages from diverse environmental sources. This review offers an exploration of tools, delves into the methods of isolation, characterization, and the extensive environmental applications of bacteriophages, particularly in areas like water quality assessment, the food sector, therapeutic interventions, and the phage therapy in various infections and diseases.
Collapse
Affiliation(s)
- Monish Bisen
- School of Biotechnology, Faculty of Applied Sciences and Biotechnology, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Kusum Kharga
- School of Biotechnology, Faculty of Applied Sciences and Biotechnology, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Sakshi Mehta
- School of Biotechnology, Faculty of Applied Sciences and Biotechnology, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Nashra Jabi
- School of Biotechnology, Faculty of Applied Sciences and Biotechnology, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Lokender Kumar
- School of Biotechnology, Faculty of Applied Sciences and Biotechnology, Shoolini University, Solan, Himachal Pradesh, 173229, India.
- Cancer Biology Laboratory, Raj Khosla Centre for Cancer Research, Shoolini University, Himachal Pradesh, Solan, 173229, India.
| |
Collapse
|
2
|
Ulker M, Siddiqui FA, Gerton TJ, Anastasi RE, Conroy DJ, Edwards EG, Laizure IE, Reynolds JD, Duggan K, Johnson KC, MacLea KS. Closed Genome Sequence of Yavru, a Novel Arthrobacter globiformis Phage. Microbiol Resour Announc 2021; 10:e0098621. [PMID: 34761957 PMCID: PMC8582311 DOI: 10.1128/mra.00986-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 10/28/2021] [Indexed: 11/25/2022] Open
Abstract
We characterized the complete genome sequence of actinobacteriophage Yavru (Siphoviridae), a cluster FE bacteriophage infecting Arthrobacter globiformis NRRL B-2979; it was 89.5% identical to cluster FE phage Whytu, with a capsid width of 50 nm and a tail length of 90 nm. The genome was 15,193 bp in length, with 23 predicted protein-coding genes.
Collapse
Affiliation(s)
- Meliha Ulker
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Fardeen A. Siddiqui
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Thomas J. Gerton
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Rachel E. Anastasi
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Dylan J. Conroy
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Ethan G. Edwards
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Isabelle E. Laizure
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Joshua D. Reynolds
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
| | - Kelsie Duggan
- Graduate Program in Biotechnology: Industrial and Biomedical Sciences, University of New Hampshire, Manchester, New Hampshire, USA
| | - Kristen C. Johnson
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
- Graduate Program in Biotechnology: Industrial and Biomedical Sciences, University of New Hampshire, Manchester, New Hampshire, USA
- Biology Program, University of New Hampshire, Manchester, New Hampshire, USA
- Department of Life Sciences, University of New Hampshire, Manchester, New Hampshire, USA
| | - Kyle S. MacLea
- Biotechnology Program, University of New Hampshire, Manchester, New Hampshire, USA
- Graduate Program in Biotechnology: Industrial and Biomedical Sciences, University of New Hampshire, Manchester, New Hampshire, USA
- Biology Program, University of New Hampshire, Manchester, New Hampshire, USA
- Department of Life Sciences, University of New Hampshire, Manchester, New Hampshire, USA
| |
Collapse
|