1
|
Datki Z, Darula Z, Vedelek V, Hunyadi-Gulyas E, Dingmann BJ, Vedelek B, Kalman J, Urban P, Gyenesei A, Galik-Olah Z, Galik B, Sinka R. Biofilm formation initiating rotifer-specific biopolymer and its predicted components. Int J Biol Macromol 2023; 253:127157. [PMID: 37778576 DOI: 10.1016/j.ijbiomac.2023.127157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 09/11/2023] [Accepted: 09/28/2023] [Indexed: 10/03/2023]
Abstract
The rotifer-specific biopolymer, namely Rotimer, is a recently discovered group of the biomolecule family. Rotimer has an active role in the biofilm formation initiated by rotifers (e.g., Euchlanis dilatata or Adineta vaga) or in the female-male sexual interaction of monogononts. To understand the Ca2+- and polarity-dependent formation of this multifunctional viscoelastic material, it is essential to explore its molecular composition. The investigation of the rotifer-enhanced biofilm and Rotimer-inductor conglomerate (RIC) formation yielded several protein candidates to predict the Rotimer-specific main components. The exudate of E. dilatata males was primarily applied from different biopolimer-containing samples (biofilm or RIC). The advantage of males over females lies in their degenerated digestive system and simple anatomy. Thus, their exudate is less contaminated with food and endosymbiont elements. The sequenced and annotated genome and transcriptome of this species opened the way for identifying Rotimer proteins by mass spectrometry. The predicted rotifer-biopolymer forming components are SCO-spondins and 14-3-3 protein. The characteristics of Rotimer are similar to Reissner's fiber, which is found in the central nervous system of vertebrates and is mainly formed from SCO-spondins. This molecular information serves as a starting point for its interdisciplinary investigation and application in biotechnology, biomedicine, or neurodegeneration-related drug development.
Collapse
Affiliation(s)
- Zsolt Datki
- Micro-In Vivo Biomolecule Research Laboratory, Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation of the University of Szeged. Dugonics ter 13. H-6720, Szeged, Hungary.
| | - Zsuzsanna Darula
- Single Cell Omics Advanced Core Facility, Hungarian Centre of Excellence for Molecular Medicine, Szeged, Hungary; Proteomics Research Group, Core Facilities, Biological Research Centre, ELKH, Szeged, Hungary
| | - Viktor Vedelek
- Department of Genetics, Faculty of Science and Informatics, University of Szeged, Kozep fasor 52, H-6726, Hungary
| | - Eva Hunyadi-Gulyas
- Proteomics Research Group, Core Facilities, Biological Research Centre, ELKH, Szeged, Hungary
| | - Brian J Dingmann
- Department of Math Science and Technology, University of Minnesota Crookston, 2900 University Avenue, Crookston, MN 56716, United States of America
| | - Balazs Vedelek
- Department of Genetics, Faculty of Science and Informatics, University of Szeged, Kozep fasor 52, H-6726, Hungary
| | - Janos Kalman
- Department of Psychiatry, Albert Szent-Gyorgyi Medical School, University of Szeged, Koranyi Fasor 8-10, H-6725 Szeged, Hungary
| | - Peter Urban
- Szentagothai Research Center, Genomic and Bioinformatic Core Facility, Pecs, Hungary
| | - Attila Gyenesei
- Szentagothai Research Center, Genomic and Bioinformatic Core Facility, Pecs, Hungary
| | - Zita Galik-Olah
- Micro-In Vivo Biomolecule Research Laboratory, Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation of the University of Szeged. Dugonics ter 13. H-6720, Szeged, Hungary
| | - Bence Galik
- Szentagothai Research Center, Genomic and Bioinformatic Core Facility, Pecs, Hungary
| | - Rita Sinka
- Department of Genetics, Faculty of Science and Informatics, University of Szeged, Kozep fasor 52, H-6726, Hungary
| |
Collapse
|
2
|
Datki Z, Acs E, Balazs E, Sovany T, Csoka I, Zsuga K, Kalman J, Galik-Olah Z. Exogenic production of bioactive filamentous biopolymer by monogonant rotifers. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 208:111666. [PMID: 33396176 DOI: 10.1016/j.ecoenv.2020.111666] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 10/31/2020] [Accepted: 11/12/2020] [Indexed: 06/12/2023]
Abstract
The chemical ecology of rotifers has been little studied. A yet unknown property is presented within some monogonant rotifers, namely the ability to produce an exogenic filamentous biopolymer, named 'Rotimer'. This rotifer-specific viscoelastic fiber was observed in six different freshwater monogonants (Euchlanis dilatata, Lecane bulla, Lepadella patella, Itura aurita, Colurella adriatica and Trichocerca iernis) in exception of four species. Induction of Rotimer secretion can only be achieved by mechanically irritating rotifer ciliate with administering different types (yeast cell skeleton, denatured BSA, epoxy, Carmine or urea crystals and micro-cellulose) and sizes (approx. from 2.5 to 50 µm diameter) of inert particles, as inductors or visualization by adhering particles. The thickness of this Rotimer is 33 ± 3 nm, detected by scanning electron microscope. This material has two structural formations (fiber or gluelike) in nano dimension. The existence of the novel adherent natural product becomes visible by forming a 'Rotimer-Inductor Conglomerate' (RIC) web structure within a few minutes. The RIC-producing capacity of animals, depends on viability, is significantly modified according to physiological- (depletion), drug- (toxin or stimulator) and environmental (temperature, salt content and pH) effects. The E. dilatata-produced RIC is affected by protein disruptors but is resistant to several chemical influences and its Rotimer component has an overwhelming cell (algae, yeast and human neuroblastoma) motility inhibitory effect, associated with low toxicity. This biopolymer-secretion-capacity is protective of rotifers against human-type beta-amyloid aggregates.
Collapse
Affiliation(s)
- Zsolt Datki
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Vasas Szent Peter u. 1-3, H-6724 Szeged, Hungary.
| | - Eva Acs
- Danube Research Institute, MTA Centre for Ecological Research, Karolina ut 29-31, H-1113 Budapest, Hungary; National University of Public Service, Faculty of Water Sciences, 6500 Baja, Bajcsy-Zsilinszky utca 12-14., Hungary
| | - Evelin Balazs
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Vasas Szent Peter u. 1-3, H-6724 Szeged, Hungary
| | - Tamas Sovany
- Institute of Pharmaceutical Technology and Regulatory Affairs, Faculty of Pharmacology, University of Szeged, Eotvos u. 6, H-6720 Szeged, Hungary
| | - Ildiko Csoka
- Institute of Pharmaceutical Technology and Regulatory Affairs, Faculty of Pharmacology, University of Szeged, Eotvos u. 6, H-6720 Szeged, Hungary
| | | | - Janos Kalman
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Vasas Szent Peter u. 1-3, H-6724 Szeged, Hungary
| | - Zita Galik-Olah
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Vasas Szent Peter u. 1-3, H-6724 Szeged, Hungary
| |
Collapse
|
3
|
Neurodegeneration-related beta-amyloid as autocatabolism-attenuator in a micro-in vivo system. IBRO Rep 2020; 9:319-323. [PMID: 33336107 PMCID: PMC7733039 DOI: 10.1016/j.ibror.2020.10.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 10/02/2020] [Indexed: 11/24/2022] Open
Abstract
Bdelloids are adaptive models for studying aggregate-metabolism interactions. Starvation causes reversible organ shrinkage in bdelloids. The organ shrinkage is in connection with autocatabolic processes. Beta-amyloid attenuates the starvation-induced germovitellaria shrinkage. Human-type amyloid-aggregates are metabolism-regulators in two bdelloid species.
Investigation of human neurodegeneration-related aggregates of beta-amyloid 1–42 (Aβ42) on bdelloid rotifers is a novel interdisciplinary approach in life sciences. We reapplied an organ size-based in vivo monitoring system, exploring the autocatabolism-related alterations evoked by Aβ42, in a glucose-supplemented starvation model. The experientially easy-to-follow size reduction of the bilateral reproductive organ (germovitellaria) in fasted rotifers was rescued by Aβ42, serving as a nutrient source- and peptide sequence-specific attenuator of the organ shrinkage phase and enhancer of the regenerative one including egg reproduction. Recovery of the germovitellaria was significant in comparison with the greatly shrunken form. In contrast to the well-known neurotoxic Aβ42 (except the bdelloids) with specific regulatory roles, the artificially designed scrambled version (random order of amino acids) was inefficient in autocatabolism attenuation, behaving as negative control. This native Aβ42-related modulation of the ‘functionally reversible organ shrinkage’ can be a potential experiential and supramolecular marker of autocatabolism in vivo.
Collapse
Key Words
- AO, acridine orange
- AVOs, acidic vesicular organelles
- Acridine orange (PubChem CID: 62344)
- Autocatabolism
- Aβ, beta-amyloid
- Bdelloid rotifer
- Beta-amyloid
- BisANS (PubChem CID: 16213473)
- BisANS, 4,4′-dianilino-1,1′-binaphthyl-5,5′-disulfonic acid dipotassium salt
- ConA, Concanamycin A
- Concanamycin A (PubChem CID: 6438151)
- D0, Day 0
- D20, Day 20
- D25, Day 25
- FROS, functionally reversible organ shrinkage
- FROSi, FROS index
- Invertebrate
- Metabolism
- NFI%, percentage of normalized fluorescence intensity
- NaOH (PubChem CID: 14798)
- Neutral red (PubChem CID: 11105)
- Organ shrinkage
- PI, propidium-iodide
- Propidium-iodide (PubChem CID: 104981)
- S-Aβ42, scrambled isoform of Aβ
- SEM, standard error of the mean
Collapse
|
4
|
Kynurenic Acid and Its Analogs Are Beneficial Physiologic Attenuators in Bdelloid Rotifers. Molecules 2019; 24:molecules24112171. [PMID: 31185582 PMCID: PMC6600480 DOI: 10.3390/molecules24112171] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Revised: 06/03/2019] [Accepted: 06/06/2019] [Indexed: 12/22/2022] Open
Abstract
The in vivo investigation of kynurenic acid (KYNA) and its analogs is one of the recent exciting topics in pharmacology. In the current study we assessed the biological effects of these molecules on bdelloid rotifers (Philodina acuticornis and Adineta vaga) by monitoring changes in their survival and phenotypical characteristics. In addition to longitudinal (slowly changing) markers (survival, number of rotifers alive and body size index), some dynamic (quickly responding) ones (cellular reduction capacity and mastax contraction frequency) were measured as well. KYNA and its analogs increased longevity, reproduction and growth, whereas reduction capacity and energy-dependent muscular activity decreased conversely. We found that spermidine, a calorie restriction mimetic, exerted similar changes in the applied micro-invertebrates. This characterized systemic profile evoked by the above-mentioned compounds was named beneficial physiologic attenuation. In reference experiments, using a stimulator (cyclic adenosine monophosphate) and a toxin (sodium azide), all parameters changed in the same direction (positively or negatively, respectively), as expected. The currently described adaptive phenomenon in bdelloid rotifers may provide holistic perspectives in translational research.
Collapse
|
5
|
Datki Z, Olah Z, Macsai L, Pakaski M, Galik B, Mihaly G, Kalman J. Application of BisANS fluorescent dye for developing a novel protein assay. PLoS One 2019; 14:e0215863. [PMID: 31002721 PMCID: PMC6474611 DOI: 10.1371/journal.pone.0215863] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Accepted: 04/09/2019] [Indexed: 11/23/2022] Open
Abstract
In many biology- and chemistry-related research fields and experiments the quantification of the peptide and/or protein concentration in samples are essential. Every research environment has unique requirements, e.g. metal ions, incubation times, photostability, pH, protease inhibitors, chelators, detergents, etc. A new protein assay may be adequate in different experiments beyond or instead of the well-known standard protocols (e.g. Qubit, Bradford or bicinchoninic acid) in related conceptions. Based on our previous studies, we developed a novel protein assay applying the 4,4′-Dianilino-1,1′-binaphthyl-5,5′-disulfonic acid dipotassium salt (BisANS) fluorescent dye. This molecule has several advantageous properties related to protein detection: good solubility in water, high photostability at adequate pH, quick interaction kinetics (within seconds) with proteins and no exclusionary sensitivity to the chelator, detergent and inhibitor ingredients. The protocol described in this work is highly sensitive in a large spectrum to detect protein (100-fold diluted samples) concentrations (from 0.28 up to more than 100 μg/mL). The BisANS protein assay is valid and applicable for quantification of the amount of protein in different biological and/or chemical samples.
Collapse
Affiliation(s)
- Zsolt Datki
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Szeged, Hungary
- * E-mail: ,
| | - Zita Olah
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Szeged, Hungary
| | - Lilla Macsai
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Szeged, Hungary
| | - Magdolna Pakaski
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Szeged, Hungary
| | - Bence Galik
- Department of Clinical Molecular Biology, Medical University of Bialystok, Bialystok, Poland
| | - Gabor Mihaly
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Szeged, Hungary
| | - Janos Kalman
- Department of Psychiatry, Faculty of Medicine, University of Szeged, Szeged, Hungary
| |
Collapse
|
6
|
Biological Activities of Four Adaptogenic Plant Extracts and Their Active Substances on a Rotifer Model. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2018; 2018:3690683. [PMID: 30405739 PMCID: PMC6204184 DOI: 10.1155/2018/3690683] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 09/30/2018] [Indexed: 11/24/2022]
Abstract
Rotifers have been widely used as well-characterized models of aging, since their multiorgan character makes them suitable as in vivo toxicological and lifespan models. Here we report the assessment of four adaptogenic plants and their extracts for the first time in this model. The effects on rotifer viability of extracts and characteristic active markers of Panax ginseng, Withania somnifera, Leuzea carthamoides, and Rhodiola rosea were tested in vivo. The crude extracts were nontoxic to Philodina acuticornis bdelloid rotifers; however, the pure substances of the plants influenced negatively the viability. Ginsenoside Rb1 and secondary metabolites of Withania somnifera exerted deleterious effect on the animals. The aglycone tyrosol and cinnamyl alcohol (from Rhodiola rosea) were more toxic than their glycosides salidroside and rosavin. Although the 20-OH-ecdysone and ajugasterone C (from Leuzea carthamoides) are chemically very similar, the latter was less toxic.
Collapse
|